8AP4 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8AP4_003 | 1/Z/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_6JXM_003 HL_22280.1 | |
| HL_8AP4_004 | 1/a/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_8AP4_005 | 1/a/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_8AP4_006 | 1/a/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_8AP4_007 | 1/a/137:142 | No text annotation Not in a motif group | geometric HL_6QN3_003 HL_03562.2 | |
| HL_8AP4_008 | 1/a/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_8AP4_009 | 1/a/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_8AP4_010 | 1/a/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_8AP4_011 | 1/a/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_8AP4_012 | 1/a/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_4WF9_010 HL_89380.2 | |
| HL_8AP4_013 | 1/a/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_8AP4_014 | 1/a/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_8AP4_015 | 1/a/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_8AP4_016 | 1/a/410:417 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
| HL_8AP4_017 | 1/a/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_8AP4_018 | 1/a/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_8AP4_019 | 1/a/544:549 | No text annotation Not in a motif group | geometric HL_5TBW_044 HL_09829.1 | |
| HL_8AP4_020 | 1/a/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_89380.2 | |
| HL_8AP4_021 | 1/a/611:617 | No text annotation Not in a motif group | geometric HL_3DIL_003 HL_42097.1 | |
| HL_8AP4_022 | 1/a/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_8AP4_023 | 1/a/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_77805.2 | |
| HL_8AP4_024 | 1/a/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_8AP4_025 | 1/a/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
| HL_8AP4_026 | 1/a/779:785 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.1 | |
| HL_8AP4_027 | 1/a/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_8AP4_028 | 1/a/885:891 | No text annotation Not in a motif group | geometric HL_3IGI_004 HL_30784.2 | |
| HL_8AP4_029 | 1/a/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
| HL_8AP4_030 | 1/a/978:985 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_8AP4_032 | 1/a/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_8AP4_033 | 1/a/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_8AP4_034 | 1/a/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_8AP4_035 | 1/a/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_8AP4_036 | 1/a/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_8AP4_037 | 1/a/1451:1459 | No text annotation Not in a motif group | geometric HL_5J7L_169 HL_53837.1 | |
| HL_8AP4_038 | 1/a/1492:1498 | No text annotation Not in a motif group | homologous HL_7A0S_037 HL_46680.1 | |
| HL_8AP4_039 | 1/a/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_03562.2 | |
| HL_8AP4_040 | 1/a/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_8AP4_041 | 1/a/1612:1619 | No text annotation Not in a motif group | ||
| HL_8AP4_042 | 1/a/1629:1637 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_8AP4_043 | 1/a/1691:1696 | No text annotation Not in a motif group | homologous HL_7A0S_042 HL_03562.2 | |
| HL_8AP4_044 | 1/a/1727:1733 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
| HL_8AP4_045 | 1/a/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_8AP4_046 | 1/a/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.5 | |
| HL_8AP4_047 | 1/a/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_8AP4_048 | 1/a/1868:1873 | GNRA Not in a motif group | geometric HL_5UZ6_001 HL_42097.1 | |
| HL_8AP4_050 | 1/a/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_8AP4_051 | 1/a/2027:2036 | No text annotation Not in a motif group | ||
| HL_8AP4_052 | 1/a/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_8AP4_053 | 1/a/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_8AP4_054 | 1/a/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_8AP4_055 | 1/a/2303:2313 | No text annotation Not in a motif group | homologous HL_5J7L_188 HL_11805.3 | |
| HL_8AP4_056 | 1/a/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_8AP4_057 | 1/a/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_8AP4_058 | 1/a/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_8AP4_059 | 1/a/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_8AP4_060 | 1/a/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_8AP4_061 | 1/a/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_8AP4_062 | 1/a/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_8AP4_063 | 1/a/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_8AP4_064 | 1/a/2658:2663 | GNRA Not in a motif group | geometric HL_1U9S_004 HL_42097.1 | |
| HL_8AP4_065 | 1/a/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_8AP4_066 | 1/a/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_8AP4_067 | 1/a/2796:2799 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_8AP4_068 | 1/a/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_8AP4_069 | 1/a/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_8AP4_070 | 1/b/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_8AP4_071 | 1/b/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8AP4_001 | No text annotation | ||
| HL_8AP4_002 | No text annotation | ||
| HL_8AP4_031 | No text annotation | ||
| HL_8AP4_049 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8AP4_001 | 1/a/24:30, 1/a/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_4WF9_001 IL_66414.6 | |
| IL_8AP4_002 | 1/a/36:37, 1/a/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_8AP4_003 | 1/a/43:44, 1/a/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_8AP4_004 | 1/a/81:85, 1/a/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_8AP4_005 | 1/a/183:184, 1/a/212:214 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_76488.2 | |
| IL_8AP4_006 | 1/a/188:194, 1/a/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_250 IL_04346.7 | |
| IL_8AP4_007 | 1/a/239:245, 1/a/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_8AP4_008 | 1/a/269:271, 1/a/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_8AP4_009 | 1/a/274:281, 1/a/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_8AP4_010 | 1/a/293:295, 1/a/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_8AP4_011 | 1/a/481:484, 1/a/496:509 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.6 | |
| IL_8AP4_012 | 1/a/536:539, 1/a/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_8AP4_013 | 1/a/564:566, 1/a/575:577 | No text annotation Not in a motif group | homologous IL_5J7L_257 IL_95997.1 | |
| IL_8AP4_014 | 1/a/606:610, 1/a/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_8AP4_015 | 1/a/672:674, 1/a/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_8AP4_016 | 1/a/674:678, 1/a/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_5J7L_260 IL_17470.6 | |
| IL_8AP4_017 | 1/a/697:698, 1/a/763:765 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.2 | |
| IL_8AP4_018 | 1/a/702:703, 1/a/728:730 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_8AP4_019 | 1/a/703:707, 1/a/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_8AP4_020 | 1/a/738:740, 1/a/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_8AP4_021 | 1/a/775:777, 1/a/787:791 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_8AP4_022 | 1/a/844:847, 1/a/933:934 | Other IL Not in a motif group | homologous IL_5J7L_267 IL_92001.1 | |
| IL_8AP4_023 | 1/a/847:848, 1/a/930:933 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
| IL_8AP4_024 | 1/a/850:851, 1/a/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_8AP4_025 | 1/a/856:862, 1/a/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_8AP4_026 | 1/a/862:863, 1/a/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.2 | |
| IL_8AP4_027 | 1/a/864:868, 1/a/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_8AP4_028 | 1/a/870:872, 1/a/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_8AP4_029 | 1/a/875:879, 1/a/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_8AP4_030 | 1/a/880:882, 1/a/894:897 | No text annotation Not in a motif group | ||
| IL_8AP4_031 | 1/a/994:996, 1/a/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_8AP4_032 | 1/a/998:1002, 1/a/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
| IL_8AP4_033 | 1/a/1004:1011, 1/a/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_8AP4_034 | 1/a/1011:1013, 1/a/1149:1150 | Single bulged U Not in a motif group | geometric IL_4WF9_038 IL_83039.13 | |
| IL_8AP4_035 | 1/a/1018:1024, 1/a/1140:1144 | No text annotation Not in a motif group | geometric IL_5J7L_280 IL_57188.3 | |
| IL_8AP4_036 | 1/a/1024:1030, 1/a/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_8AP4_037 | 1/a/1031:1034, 1/a/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_8AP4_038 | 1/a/1038:1041, 1/a/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_8AP4_039 | 1/a/1196:1198, 1/a/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_8AP4_040 | 1/a/1202:1206, 1/a/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_8AP4_041 | 1/a/1208:1215, 1/a/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_8AP4_042 | 1/a/1262:1269, 1/a/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_8AP4_043 | 1/a/1310:1313, 1/a/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_290 IL_50694.2 | |
| IL_8AP4_044 | 1/a/1319:1323, 1/a/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_8AP4_045 | 1/a/1351:1355, 1/a/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_8AP4_046 | 1/a/1357:1361, 1/a/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_8AP4_047 | 1/a/1415:1416, 1/a/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_8AP4_048 | 1/a/1417:1421, 1/a/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_8AP4_049 | 1/a/1432:1435, 1/a/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_8AP4_050 | 1/a/1437:1440, 1/a/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
| IL_8AP4_051 | 1/a/1450:1451, 1/a/1459:1461 | Single bulged U Not in a motif group | homologous IL_5J7L_298 IL_83039.13 | |
| IL_8AP4_052 | 1/a/1468:1471, 1/a/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_8AP4_053 | 1/a/1474:1478, 1/a/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_8AP4_054 | 1/a/1481:1482, 1/a/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.4 | |
| IL_8AP4_055 | 1/a/1489:1491, 1/a/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_8AP4_056 | 1/a/1526:1529, 1/a/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_8AP4_057 | 1/a/1651:1656, 1/a/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_8AP4_058 | 1/a/1663:1665, 1/a/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_8AP4_059 | 1/a/1666:1669, 1/a/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_8AP4_060 | 1/a/1669:1674, 1/a/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
| IL_8AP4_061 | 1/a/1686:1691, 1/a/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_65969.2 | |
| IL_8AP4_062 | 1/a/1712:1718, 1/a/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_8AP4_063 | 1/a/1720:1724, 1/a/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
| IL_8AP4_064 | 1/a/1770:1771, 1/a/1980:1982 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
| IL_8AP4_065 | 1/a/1798:1804, 1/a/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7A0S_065 IL_17069.3 | |
| IL_8AP4_066 | 1/a/1837:1840, 1/a/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_8AP4_067 | 1/a/1841:1842, 1/a/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_8AP4_068 | 1/a/1846:1849, 1/a/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_8AP4_069 | 1/a/1864:1867, 1/a/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_8AP4_070 | 1/a/1933:1934, 1/a/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_8AP4_071 | 1/a/1934:1945, 1/a/1961:1964 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_8AP4_072 | 1/a/2050:2052, 1/a/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_8AP4_073 | 1/a/2054:2056, 1/a/2612:2615 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_8AP4_074 | 1/a/2064:2066, 1/a/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_8AP4_075 | 1/a/2067:2070, 1/a/2441:2443 | No text annotation Not in a motif group | homologous IL_5J7L_323 NA | |
| IL_8AP4_076 | 1/a/2070:2071, 1/a/2438:2441 | Minor groove platform Not in a motif group | geometric IL_5TBW_094 IL_42622.2 | |
| IL_8AP4_077 | 1/a/2081:2083, 1/a/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_8AP4_078 | 1/a/2085:2087, 1/a/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_8AP4_079 | 1/a/2202:2204, 1/a/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_8AP4_080 | 1/a/2297:2299, 1/a/2317:2321 | No text annotation Not in a motif group | homologous IL_5J7L_332 IL_56105.1 | |
| IL_8AP4_081 | 1/a/2350:2353, 1/a/2364:2367 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_8AP4_082 | 1/a/2401:2403, 1/a/2414:2415 | Single bulged U Not in a motif group | geometric IL_5LYS_008 IL_83039.13 | |
| IL_8AP4_083 | 1/a/2453:2455, 1/a/2496:2500 | No text annotation Not in a motif group | homologous IL_5J7L_335 NA | |
| IL_8AP4_084 | 1/a/2456:2459, 1/a/2493:2495 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_8AP4_085 | 1/a/2459:2461, 1/a/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_337 IL_92788.2 | |
| IL_8AP4_086 | 1/a/2466:2470, 1/a/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_8AP4_087 | 1/a/2507:2509, 1/a/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_8AP4_088 | 1/a/2510:2512, 1/a/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_340 IL_90933.2 | |
| IL_8AP4_089 | 1/a/2512:2513, 1/a/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_8AP4_090 | 1/a/2522:2523, 1/a/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_8AP4_091 | 1/a/2588:2591, 1/a/2603:2606 | No text annotation Not in a motif group | homologous IL_5J7L_343 NA | |
| IL_8AP4_092 | 1/a/2591:2592, 1/a/2601:2603 | Single bulged A Not in a motif group | geometric IL_1U9S_001 IL_37497.2 | |
| IL_8AP4_093 | 1/a/2636:2640, 1/a/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
| IL_8AP4_094 | 1/a/2652:2658, 1/a/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7A0S_094 IL_16458.1 | |
| IL_8AP4_095 | 1/a/2680:2684, 1/a/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_8AP4_096 | 1/a/2687:2691, 1/a/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_8AP4_097 | 1/a/2695:2696, 1/a/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_8AP4_098 | 1/a/2737:2742, 1/a/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_8AP4_099 | 1/a/2795:2796, 1/a/2799:2801 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
| IL_8AP4_100 | 1/a/2806:2811, 1/a/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_8AP4_101 | 1/a/2838:2839, 1/a/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_8AP4_102 | 1/a/2843:2846, 1/a/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_8AP4_103 | 1/a/2847:2852, 1/a/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 | |
| IL_8AP4_104 | 1/b/17:18, 1/b/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_8AP4_105 | 1/b/23:28, 1/b/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_8AP4_106 | 1/b/30:31, 1/b/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_8AP4_107 | 1/b/34:38, 1/b/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_5J7L_358 IL_58103.6 | |
| IL_8AP4_108 | 1/b/71:79, 1/b/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8AP4_001 | 1/a/30:31, 1/a/474:481, 1/a/509:510 | No text annotation Not in a motif group | ||
| J3_8AP4_002 | 1/a/56:57, 1/a/70:76, 1/a/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_8AP4_003 | 1/a/683:689, 1/a/773:775, 1/a/791:794 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_8AP4_004 | 1/a/698:700, 1/a/732:736, 1/a/760:763 | No text annotation Not in a motif group | ||
| J3_8AP4_005 | 1/a/1298:1303, 1/a/1625:1627, 1/a/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_8AP4_006 | 1/a/1306:1309, 1/a/1605:1611, 1/a/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_8AP4_007 | 1/a/1344:1349, 1/a/1382:1385, 1/a/1402:1403 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_8AP4_008 | 1/a/2091:2093, 1/a/2196:2200, 1/a/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_8AP4_009 | 1/a/2295:2297, 1/a/2321:2323, 1/a/2332:2337 | No text annotation Not in a motif group | ||
| J3_8AP4_010 | 1/a/2517:2520, 1/a/2545:2547, 1/a/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_8AP4_011 | 1/a/2789:2791, 1/a/2805:2806, 1/a/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_8AP4_012 | 1/a/2812:2815, 1/a/2831:2836, 1/a/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_8AP4_013 | 1/b/10:16, 1/b/68:70, 1/b/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA |
Problematic loops
No problematic loops
Coloring options: