Internal Loop Motif Atlas Release 3.13

#	Motif	Num Nts	Instances
1	IL_89407.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW with bulges (15) Isolated cWH basepair (11) UU cWW (10) CA cWW (5) Isolated near basepair (4) CC cWW (4) Intercalated tWH (3) Self complementary (3) AA cWW (2) Multiple bulged bases, near cWW (1) Isolated cWS basepair (1) Single bulged G, near cWW (1) UC cWW (1) UU cWW water inserted (1) Decoding loop related (1) UG cWW (1) CA cWW with bulged A (1)	6	267
2	IL_80007.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged A (85) Multiple bulged bases (6) Basepair outside cWW (3) Major groove intercalation (2) Major groove platform outside cWW (2) Major groove outside cWW, minor groove, intercalation pocket (1) Major groove platform (1) Stack outside cWW (1)	4	107
3	IL_83039.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged U (64) Multiple bulged bases (4)	4	69
4	IL_85877.2 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (53) Non canonical cWW and near pair (2)	8	56
5	IL_11156.5 View exemplar Basepair signature: cWW-R-cWW History status: Exact match Single stack bend (19) Decoding loop related (13) Stack and bulge (2) Not an internal loop (1) Intercalated cWW (1)	5	46
6	IL_80663.4 View exemplar Basepair signature: cWW-tHS-cSH-cWW History status: Exact match Major groove platform (27) Major groove platform; stack outside cWW (9)	5	45
7	IL_06437.3 View exemplar Basepair signature: cWW-tSH-cWW History status: Exact match Minor groove platform (40) Major groove outside cWW, minor groove, intercalation pocket (1) Single bulged A (1)	5	42
8	IL_12786.3 View exemplar Basepair signature: cWW-cWH-cWW History status: Exact match Isolated cWH basepair (31) Other IL (1) Decoding loop with one bulged A (1) Self complementary (1) cWH basepair with bulged bases (1)	6	36
9	IL_13730.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (26) Major groove outside cWW, minor groove, intercalation pocket (6)	4	35
10	IL_29549.3 View exemplar Basepair signature: cWW-tSS-L-tSH-tHS-tHS-cWW History status: Exact match Kink-turn (29) Kink-turn with non-sequential stacking (4)	12	33
11	IL_61258.3 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged C (30) Single bulged A (1)	4	32
12	IL_56467.3 View exemplar Basepair signature: cWW-tSH-tHS-tHS-cWW History status: Exact match Triple sheared (27) AAA cross-strand stack (4) Other IL (1)	10	32
13	IL_59137.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged G (30) SSU/LSU pseudoknot (1)	4	32
14	IL_09705.3 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: Exact match Double sheared (23) Other IL (2) tSH-tHW (1) tWS-tSW (1)	8	27
15	IL_75892.2 View exemplar Basepair signature: cWW-tWH-cSH-L-cWS-cWW History status: Exact match C-loop (20)	7	20
16	IL_53523.3 View exemplar Basepair signature: cWW-tWH-L-tHS-cWW History status: Exact match UAA/GAN (17) UAA/GAN related (1)	9	18
17	IL_00168.3 View exemplar Basepair signature: cWW-cSW-cWW History status: Exact match Major groove minor groove platform; mini C-loop (12) Major groove outside cWW, minor groove, intercalation pocket (3)	6	17
18	IL_39521.2 View exemplar Basepair signature: cWW-tSH-tHW-tHS-cWW History status: Exact match tSH-tHW-tHS (14) 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)	10	15
19	IL_70995.2 View exemplar Basepair signature: cWW-tSH-L-cWW History status: Exact match Major groove platform; stack outside cWW (11)	6	15
20	IL_81326.1 View exemplar Basepair signature: cWW-L-cWW-cWW History status: Exact match Decoding loop related (2)	7	14
21	IL_87630.2 View exemplar Basepair signature: cWW-tSH-cSH-cWW History status: Exact match Major groove platform with extra pair (10) Other IL (1)	7	14
22	IL_04346.3 View exemplar Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 8x7 Sarcin-Ricin; G-bulge (14)	15	14
23	IL_35110.3 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 7x6 Sarcin-Ricin; G-bulge (8) Sarcin-Ricin target in LSU H95; G-bulge (5)	13	13
24	IL_67621.2 View exemplar Basepair signature: cWW-cWS-cWW History status: Exact match Isolated cWS basepair (8) Isolated near basepair (2)	6	13
25	IL_95485.3 View exemplar Basepair signature: cWW-cSH-cWW-cWW History status: Exact match Major groove platform with extra cWW (8) Isolated basepair with bulged bases (1)	7	13
26	IL_50676.2 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (5) Pseudoknot (3) Other IL (1)	8	13
27	IL_60676.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single stack bend (2) Major groove outside cWW, minor groove, intercalation pocket (2) Minor groove platform (2) Not an internal loop (2)	5	12
28	IL_38958.3 View exemplar Basepair signature: cWW-tHS-cWW History status: Exact match Isolated tHS basepair with bulges (12)	6	12
29	IL_84473.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match	6	11
30	IL_49607.4 View exemplar Basepair signature: cWW-tSH-tHW-cWW History status: Exact match tSH-tHW (7) Other IL (1)	8	11
31	IL_09818.3 View exemplar Basepair signature: cWW-tHS-cWW History status: Exact match Minor groove platform with intercalation (5) Minor groove platform (2) Other IL (1)	5	10
32	IL_81328.3 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Basepair outside cWW, intercalation pocket (5) Major groove outside cWW, intercalation pocket (1) Single stack bend (1) Stack outside cWW (1) Intercalation pocket (1)	5	9
33	IL_35167.2 View exemplar Basepair signature: cWW-R-tWH-L-tHS-cWW History status: Exact match UAA/GAN (2) tSH-tHS-tHW (1) UAA/GAN with extra pair (1)	10	9
34	IL_94431.2 View exemplar Basepair signature: cWW-cSH-cWS-cWW History status: Exact match Minor groove platform (9)	6	9
35	IL_81389.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-cWW History status: Exact match UAA/GAN related (5) UAA/GAN variation (3)	9	8
36	IL_40979.3 View exemplar Basepair signature: cWW-cWW-tWW-cWW History status: Exact match tWW and non-canonical cWW (6) tWW and near cWH (1) Tandem non-canonical cWW pairs (1)	8	8
37	IL_19389.1 View exemplar Basepair signature: cWW-L-cSH-cWW History status: Exact match Major groove platform with intercalated tWH (5) Left turn (2)	6	8
38	IL_97601.3 View exemplar Basepair signature: cWW-cSH-tHW-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (6) 8-nt loop receptor (2)	8	8
39	IL_15861.3 View exemplar Basepair signature: cWW-L-L-L-tSW-cSH-cWW History status: Exact match SSU/LSU pseudoknot (6)	10	7
40	IL_36612.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged U (4)	4	7
41	IL_22946.1 View exemplar Basepair signature: cWW-cHH-cWW History status: Exact match Major groove platform (3) Major groove intercalation (2)	5	7
42	IL_66584.3 View exemplar Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW History status: Exact match tSH-tSH-tHH-tHS (3) Quadruple sheared (2)	12	7
43	IL_51265.1 View exemplar Basepair signature: cWW-tSS-L-tSH-tHS-cWW History status: Exact match Kink-turn from U4 (5) Kink-turn from T-box riboswitch (1)	10	6
44	IL_85402.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: Exact match Minor groove platform related (2) Multiple bulged bases with non-canonical cWW (1) UAA/GAN variation (1)	9	6
45	IL_94181.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Other IL (2) Intercalated cWS (2) Single stack bend with bulge (1) Single base bend (1)	5	6
46	IL_90691.1 View exemplar Basepair signature: cWW-cSH-R-cWW-cWW History status: Exact match 8-nt loop receptor (2) Major groove minor groove platform with extra cWW (1) Other IL (1)	8	6
47	IL_90991.3 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (4)	4	6
48	IL_58103.3 View exemplar Basepair signature: cWW-cSH-L-cWS-tSW-R-R-cWW History status: Exact match Symmetric double minor groove platform (5)	10	6
49	IL_66414.3 View exemplar Basepair signature: cWW-cWW-tSH-tHS-tHS-L-R-cWW History status: Exact match Triple sheared with non-canonical cWW (4)	14	6
50	IL_94518.2 View exemplar Basepair signature: cWW-cWW-L-R-cWW-L-R-cWW History status: Exact match Tandem non-canonical cWW pairs with near WC pairs (1) Other IL (1)	12	6
51	IL_14148.3 View exemplar Basepair signature: cWW-cWW-tSH-cWW History status: Exact match Minor groove platform with extra cWW (5)	7	6
52	IL_56455.1 View exemplar Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW History status: Exact match Bacterial 5S Loop E (6)	18	6
53	IL_17470.3 View exemplar Basepair signature: cWW-R-tHW-tHW-tWW-cWW History status: Exact match tHW-tHW cross-strand stack (5)	11	6
54	IL_47154.2 View exemplar Basepair signature: cWW-cSW-tHS-cWW History status: Exact match	8	5
55	IL_28279.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	5
56	IL_54997.1 View exemplar Basepair signature: cWW-tWW-cWW History status: Exact match Isolated tWW turn (4)	6	5
57	IL_57188.1 View exemplar Basepair signature: cWW-tWW-cSH-L-tWW-cSH-cWW History status: Exact match	11	5
58	IL_96042.1 View exemplar Basepair signature: cWW-cWW-cSH-R-cWW History status: Exact match Major groove minor groove platform with extra cWW (4)	8	5
59	IL_60992.3 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW History status: Exact match	16	5
60	IL_55953.1 View exemplar Basepair signature: cWW-tSH-R-tHS-L-bif-cWW History status: Exact match	12	5
61	IL_49767.2 View exemplar Basepair signature: cWW-cWW-tWH-L-tHS-cWW History status: Exact match UAA/GAN with extra cWW (3)	11	5
62	IL_77853.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged A (2) Major groove intercalation (1)	4	5
63	IL_17069.1 View exemplar Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW History status: Exact match Kink-turn related (3)	13	5
64	IL_29978.2 View exemplar Basepair signature: cWW-L-L-L-tHS-cWW History status: Exact match	9	5
65	IL_23544.1 View exemplar Basepair signature: cWW-L-R-R-cWW History status: Exact match	7	5
66	IL_83162.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHH-cWW History status: Exact match	11	5
67	IL_50949.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW with bulges (4)	6	4
68	IL_90538.2 View exemplar Basepair signature: cWW-tSS-L-tSH-tSS-tHS-L-R-L-cWW History status: Exact match Kink-turn (4)	13	4
69	IL_19954.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-cWW-cWW History status: Exact match	12	4
70	IL_67474.2 View exemplar Basepair signature: cWW-R-R-cWW History status: Exact match	6	4
71	IL_07527.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: Exact match Multiple bulged bases with near cWW (1)	9	4
72	IL_60695.1 View exemplar Basepair signature: cWW-L-R-R-R-cWW History status: Exact match	8	4
73	IL_08296.1 View exemplar Basepair signature: cWW-tSH-R-R-cWW History status: Exact match	8	4
74	IL_45944.2 View exemplar Basepair signature: cWW-L-L-tWH-L-L-L-cWW History status: Exact match	11	4
75	IL_68506.1 View exemplar Basepair signature: cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW History status: Exact match	0	4
76	IL_08376.1 View exemplar Basepair signature: cWW-tWH-tSW-L-cWS-cWW History status: Exact match C-loop (4)	7	4
77	IL_34626.2 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	4
78	IL_83121.1 View exemplar Basepair signature: cWW-cSS-R-cWW History status: Exact match 180 degree turn (1)	5	4
79	IL_34915.2 View exemplar Basepair signature: cWW-R-tWH-cSH-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (4)	9	4
80	IL_97697.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L History status: Exact match Reverse turn (4)	0	4
81	IL_66745.1 View exemplar Basepair signature: cWW-L-R-tHS-cWW-cWW History status: Exact match	10	4
82	IL_75283.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW History status: Exact match	18	3
83	IL_79393.3 View exemplar Basepair signature: cWW-L-R-R-R-R-R-L-cWW History status: Exact match	11	3
84	IL_90600.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: Exact match	8	3
85	IL_54678.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	4	3
86	IL_75461.1 View exemplar Basepair signature: cWW-tSS-cSS-L-R-cWW History status: Exact match	7	3
87	IL_93830.2 View exemplar Basepair signature: cWW-cWW-bif-R-cSH-tWH-tHS-cWW History status: Exact match 7x7 Sarcin-Ricin with intercalated A; G-bulge (3)	14	3
88	IL_16109.2 View exemplar Basepair signature: cWW-R-cSH-tWH-tHS-cWW History status: Exact match 5x5 Sarcin-Ricin with intercalated A; G-bulge (2) AAA cross-strand stack (1)	10	3
89	IL_24606.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW History status: Exact match 8x6 Sarcin-Ricin with inserted Y; G-bulge (3)	14	3
90	IL_35904.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW History status: Exact match Kink-turn (3)	12	3
91	IL_57018.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged A (1) Single bulged G (1)	4	3
92	IL_24905.3 View exemplar Basepair signature: cWW-cSW-R-cWW History status: Exact match	7	3
93	IL_48280.1 View exemplar Basepair signature: cWW-tSH-R-cWW History status: Exact match	7	3
94	IL_71960.1 View exemplar Basepair signature: cWW-cSH-cWW History status: Exact match Minor groove platform (1) Single bulged A (1)	5	3
95	IL_64900.1 View exemplar Basepair signature: cWW-cWW-tSS-tSH-L-tHS-R-cWW-L History status: Exact match Kink-turn (3)	0	3
96	IL_01789.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match Intercalated tWH (1)	6	3
97	IL_68057.1 View exemplar Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW History status: Exact match Kink-turn (3)	12	3
98	IL_80138.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: Exact match Isolated basepair with bulged bases (1)	8	3
99	IL_74051.1 View exemplar Basepair signature: cWW-tSS-tSH-L-tHS-cWW-L History status: Exact match Kink-turn (1)	0	3
100	IL_82426.2 View exemplar Basepair signature: cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW History status: Exact match	14	3
101	IL_02349.2 View exemplar Basepair signature: cWW-tSH-tWH-cSH-tWH-tHS-cWW History status: Exact match 8x6 Sarcin-Ricin with bulged A; G-bulge (3)	13	3
102	IL_52451.3 View exemplar Basepair signature: cWW-cHW-cWW-cWW History status: Exact match	8	3
103	IL_91482.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (1)	4	3
104	IL_26769.1 View exemplar Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW History status: Exact match tSH-tHW-tHS-cWW (3)	12	3
105	IL_68780.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-R-cWW History status: Exact match Kink-turn (3)	12	3
106	IL_90106.3 View exemplar Basepair signature: cWW-tHH-tHS-cWW History status: Exact match	8	3
107	IL_08966.2 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	3
108	IL_27393.3 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: Exact match	10	3
109	IL_17222.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	4	3
110	IL_38634.2 View exemplar Basepair signature: cWW-cWH-tWS-cWW History status: Exact match cWH basepair and non-canonical AC (3)	8	3
111	IL_58960.1 View exemplar Basepair signature: cWW-L-cWW-L-tWW-L-R-L History status: Exact match	0	3
112	IL_09732.2 View exemplar Basepair signature: cWW-cWW-R-cWW History status: Exact match	7	3
113	IL_23663.2 View exemplar Basepair signature: cWW-cSH-cWW-cWW History status: Exact match Isolated non-canonical cWW with bulges (1)	7	3
114	IL_66693.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW-cWW History status: Exact match	10	3
115	IL_87284.1 View exemplar Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW History status: Exact match tSH-tHW-tWH-tHS (3)	0	3
116	IL_28060.3 View exemplar Basepair signature: cWW-tHH-L-cWS-R-cWW History status: Exact match Major groove minor groove platform with tHH (2)	8	2
117	IL_39279.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (2)	8	2
118	IL_05062.4 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: Exact match Triple sheared related (2)	11	2
119	IL_28202.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: Exact match	8	2
120	IL_70285.1 View exemplar Basepair signature: cWW-L-R-cWW-L-L-tSW-L-cWW History status: Exact match	13	2
121	IL_44904.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged A (1)	4	2
122	IL_18369.2 View exemplar Basepair signature: cWW-cSH-tHS-cWW History status: Exact match	8	2
123	IL_90612.1 View exemplar Basepair signature: cWW-tWH-tWH-tWH-L-R-R-L-tWW-cWW History status: Exact match	14	2
124	IL_45034.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: Exact match	10	2
125	IL_67703.1 View exemplar Basepair signature: cWW-tWW-L-tWH-R-R-R-R-cSH-R-R-L-tHH-tHS-cWW History status: Exact match	22	2
126	IL_88269.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-tWW-cWW History status: Exact match 6x5 Sarcin-Ricin; G-bulge (2)	11	2
127	IL_51590.1 View exemplar Basepair signature: cWW-cSH-tWH-cSH-cWW-cWW History status: Exact match Other IL (1) C-loop with extra cWW pair (1)	9	2
128	IL_81522.1 View exemplar Basepair signature: cWW-cWS-L-cWW History status: Exact match Major groove minor groove platform with intercalation; mini C-loop (2)	0	2
129	IL_99373.1 View exemplar Basepair signature: cWW-bif-L-cWW History status: Exact match	7	2
130	IL_36143.2 View exemplar Basepair signature: cWW-R-cWW History status: Exact match	5	2
131	IL_18894.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: Exact match Quadruple sheared (2)	12	2
132	IL_34378.1 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match	6	2
133	IL_25657.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	13	2
134	IL_57850.1 View exemplar Basepair signature: cWW-tHH-cWW History status: Exact match Isolated near basepair (1)	6	2
135	IL_34470.1 View exemplar Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2)	17	2
136	IL_16456.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-tSS-R-cWW History status: Exact match Kink-turn (2)	11	2
137	IL_26351.1 View exemplar Basepair signature: cWW-cWW-tSH-tWH-tHW-tHS-cWW-cWW History status: Exact match tSH-tHW-tHS with extra cWW pairs (1)	14	2
138	IL_19244.1 View exemplar Basepair signature: cWW-L-L-L-cWW History status: Exact match	7	2
139	IL_36973.3 View exemplar Basepair signature: cWW-tSH-L-R-R-R-L-L-cWW-cWW History status: Exact match	14	2
140	IL_53318.1 View exemplar Basepair signature: cWW-cWW-tWH-tSH-tHS-cWW History status: Exact match	10	2
141	IL_92224.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged U (1)	4	2
142	IL_86428.1 View exemplar Basepair signature: cWW-tHW-cWW-L-cSH-R-tHS-cWW-cWW History status: Exact match	12	2
143	IL_58760.1 View exemplar Basepair signature: cWW-tSH-R-tHH-tHS-cWW History status: Exact match	11	2
144	IL_77870.1 View exemplar Basepair signature: cWW-L-R-L-tHS-L-cWW-L-cWW History status: Exact match	13	2
145	IL_27825.1 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match Tandem non-canonical cWW pairs (1)	6	2
146	IL_19557.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	5	2
147	IL_42032.1 View exemplar Basepair signature: cWW-cSH-cWW-tWH-L-cWW-L-L History status: Exact match	11	2
148	IL_92440.1 View exemplar Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW History status: Exact match tWH-tWH-tHW-tHW (2)	14	2
149	IL_86578.1 View exemplar Basepair signature: cWW-R-cWW History status: Exact match CC cWW (1)	5	2
150	IL_95511.1 View exemplar Basepair signature: cWW-R-R-R-tSW-L-L-cWW History status: Exact match	11	2
151	IL_27900.1 View exemplar Basepair signature: cWW-tSH-cWW History status: Exact match Minor groove platform (1) Multiple bulged bases (1)	5	2
152	IL_80884.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-L-L History status: Exact match	0	2
153	IL_90423.1 View exemplar Basepair signature: cWW-cWW-tHH-cWW History status: Exact match	8	2
154	IL_19724.1 View exemplar Basepair signature: cWW-cSH-R-R-cWW History status: Exact match	7	2
155	IL_54461.1 View exemplar Basepair signature: cWW-R-tHS-cWW History status: Exact match	7	2
156	IL_75238.1 View exemplar Basepair signature: cWW-cWW-cSW-cSH-cWW History status: Exact match	9	2
157	IL_78994.1 View exemplar Basepair signature: cWW-cSW-cWW-cWW History status: Exact match	8	2
158	IL_95688.1 View exemplar Basepair signature: cWW-L-cSS-cSS-L-R-cWW History status: Exact match	11	2
159	IL_04736.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW History status: Exact match	0	1
160	IL_17765.1 View exemplar Basepair signature: cWW-tWH-cHW-L-tSS-cSS-cWW-R-L History status: Exact match	0	1
161	IL_59724.1 View exemplar Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW History status: Exact match 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge (1)	0	1
162	IL_69979.1 View exemplar Basepair signature: cWW-L-R-R-R-R-L-L-L-cWW History status: Exact match	12	1
163	IL_98353.1 View exemplar Basepair signature: cWW-cWS-L-L-cWW History status: Exact match	8	1
164	IL_09986.1 View exemplar Basepair signature: cWW-L-R-L-tHW-L-L-cWW History status: Exact match	11	1
165	IL_32181.1 View exemplar Basepair signature: cWW-cWW-cWW-L-cSW-L-R-R-R-cWW History status: Exact match	15	1
166	IL_44325.1 View exemplar Basepair signature: cWW-cWH-cWW-L History status: Exact match	0	1
167	IL_54670.1 View exemplar Basepair signature: cWW-tSH-L-R-tHH-tHS-cWW History status: Exact match	12	1
168	IL_62654.1 View exemplar Basepair signature: cWW-tSH-tHH-tHS-cWW History status: Exact match tSH-tHH-tHS (1)	0	1
169	IL_84409.1 View exemplar Basepair signature: cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L History status: Exact match	0	1
170	IL_93585.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-tWH-L-cSH-L History status: Exact match	0	1
171	IL_23934.1 View exemplar Basepair signature: cWW-R-tWH-tHS-cWW History status: Exact match tSH-tHW (1)	9	1
172	IL_47108.1 View exemplar Basepair signature: cWW-L-R-L-tHH-L-cWW History status: Exact match	0	1
173	IL_56693.1 View exemplar Basepair signature: cWW-R-R-tWH-L-R-cWW History status: Exact match	10	1
174	IL_95811.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-L-R-L History status: Exact match Vitamin B12 Aptamer (1)	0	1
175	IL_17971.1 View exemplar Basepair signature: cWW-tWW-L-tWW-L-cWW History status: Exact match	10	1
176	IL_39287.1 View exemplar Basepair signature: cWW-L-R-L-tSH-tSS-L-tHS-cWW-L-L History status: Exact match	0	1
177	IL_60049.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: Exact match	7	1
178	IL_98711.1 View exemplar Basepair signature: cWW-tSH-tHW-tWW-cWW History status: Exact match tSH-tHW-tWW (1)	10	1
179	IL_20245.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L History status: Exact match	25	1
180	IL_33557.1 View exemplar Basepair signature: cWW-tHH-R-L-R-L-L-R-L-R-cWW History status: Exact match	0	1
181	IL_63750.1 View exemplar Basepair signature: cWW-tSS-cSS-tWW-L-tSH-R-R-cWW History status: Exact match	11	1
182	IL_00587.1 View exemplar Basepair signature: cWW-tSH-L-R-L-L-cWW History status: Exact match	10	1
183	IL_15978.1 View exemplar Basepair signature: cWW-tSH-L-cWS-cWW-L History status: Exact match	11	1
184	IL_24106.1 View exemplar Basepair signature: cWW-tSH-tWH-tWH-R-R-R-R-R-R-R-cWW History status: Exact match	17	1
185	IL_56867.1 View exemplar Basepair signature: cWW-L-R-R-L-L-cSS-L-cWW-cWW History status: Exact match	13	1
186	IL_79682.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	1
187	IL_87677.1 View exemplar Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW History status: Exact match tWH-tWH-tHW-tHW (1)	12	1
188	IL_95942.1 View exemplar Basepair signature: cWW-L-R-L-L-L-L-L-cWW History status: Exact match	11	1
189	IL_06300.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW History status: Exact match	0	1
190	IL_39507.1 View exemplar Basepair signature: cWW-L-R-L-L-L-cWW History status: Exact match	9	1
191	IL_51366.1 View exemplar Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW History status: Exact match	20	1
192	IL_60171.1 View exemplar Basepair signature: cWW-L-tWH-R-R-R-cWW History status: Exact match Major groove platform; stack outside cWW (1)	9	1
193	IL_70801.1 View exemplar Basepair signature: cWW-cWW-L-R-tWW-L-R-L-cWW History status: Exact match	13	1
194	IL_98876.1 View exemplar Basepair signature: cWW-cWW-L-R-R-tHW-bif-cWW History status: Exact match	13	1
195	IL_11882.1 View exemplar Basepair signature: cWW-L-R-tWH-tWH-L-R-L-cWW History status: Exact match	0	1
196	IL_20463.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R History status: Exact match 7x11 Sarcin-Ricin with pseudoknotted region; G-bulge (1)	0	1
197	IL_34013.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	1
198	IL_54896.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R History status: Exact match	0	1
199	IL_64040.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged U (1)	4	1
200	IL_75722.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match	6	1
201	IL_01335.1 View exemplar Basepair signature: cWW-cHW-L-L-L-L-L-L-L-L-cWW History status: Exact match	14	1
202	IL_47743.1 View exemplar Basepair signature: cWW-cSW-tWH-cSH-L-cWS-cWW History status: Exact match	9	1
203	IL_79734.1 View exemplar Basepair signature: cWW-R-R-R-R-cWW History status: Exact match	8	1
204	IL_95993.1 View exemplar Basepair signature: cWW-R-tSS-tWW-tWW-cWW History status: Exact match Kink-turn related (1)	11	1
205	IL_18459.1 View exemplar Basepair signature: cWW-cWW-R-cWW History status: Exact match	7	1
206	IL_28512.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	13	1
207	IL_12750.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW History status: Exact match	0	1
208	IL_21121.1 View exemplar Basepair signature: cWW-tSW-cWS-cSH-tSW-tWH-R-R-cWW-cWW History status: Exact match	0	1
209	IL_34223.1 View exemplar Basepair signature: cWW-tWH-cSH-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (1)	8	1
210	IL_45257.1 View exemplar Basepair signature: cWW-tSH-cWH-tWH-tSS-tHW-tHH-cWW History status: Exact match	14	1
211	IL_64842.1 View exemplar Basepair signature: cWW-L-tWH-L-cWW-L-cSH History status: Exact match	0	1
212	IL_75840.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	1
213	IL_85630.1 View exemplar Basepair signature: cWW-tSH-L-R-L-R-L-cWW-L-cWW-L History status: Exact match	0	1
214	IL_94351.1 View exemplar Basepair signature: cWW-L-R-L-R-L-tHS-cWW History status: Exact match	0	1
215	IL_01502.1 View exemplar Basepair signature: cWW-L-R-R-L-L-L-L-cWW-cWW History status: Exact match	13	1
216	IL_16160.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	1
217	IL_67834.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-tWW-R-R-R-R-R-R-R-R-R-R-R-R-cWW History status: Exact match	24	1
218	IL_89055.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-cWW-L-L History status: Exact match	0	1
219	IL_28999.1 View exemplar Basepair signature: cWW-R-R-R-tSW-L-cWW History status: Exact match	10	1
220	IL_51877.1 View exemplar Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW History status: Exact match	13	1
221	IL_82194.1 View exemplar Basepair signature: cWW-L-R-R-R-cWW History status: Exact match	8	1
222	IL_90922.1 View exemplar Basepair signature: cWW-tSH-tWH-tHS-tSS-tSS-R-cWW History status: Exact match Kink-turn (1)	12	1
223	IL_99645.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged G (1)	4	1
224	IL_22436.1 View exemplar Basepair signature: cWW-L-tWH-tHW-cWW-cWW History status: Exact match Kink-turn related (1)	0	1
225	IL_45481.1 View exemplar Basepair signature: cWW-L-R-cHW-L-L-tSW-L-cWW History status: Exact match	13	1
226	IL_55896.1 View exemplar Basepair signature: cWW-tSH-tHS-tWS-cWW History status: Exact match tSH-tHS-tWS (1)	10	1
227	IL_85661.1 View exemplar Basepair signature: cWW-R-bif-tHW-tHS-cWW History status: Exact match	10	1
228	IL_16348.1 View exemplar Basepair signature: cWW-cSH-R-R-cWW-cWW History status: Exact match	9	1
229	IL_36582.1 View exemplar Basepair signature: cWW-L-R-L-tHH-L-tWH-tHS-cWW History status: Exact match 8x6 Sarcin-Ricin with inserted A; G-bulge (1)	14	1
230	IL_49109.1 View exemplar Basepair signature: cWW-tSH-tSH-tHW-tHH-tHS-cWW-cWW History status: Exact match tSH-tHW-tHH-tHS (1)	16	1
231	IL_96335.1 View exemplar Basepair signature: cWW-cSH-L-tSH-cWW-R-R-cWW History status: Exact match	11	1
232	IL_19048.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cSH-L-R-cWW-cWW History status: Exact match	0	1
233	IL_29509.1 View exemplar Basepair signature: cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW History status: Exact match	15	1
234	IL_41177.1 View exemplar Basepair signature: cWW-cWW-cSH-cSH-tHS-cWW History status: Exact match 8-nt loop receptor (1)	8	1
235	IL_52138.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: Exact match	8	1
236	IL_99902.1 View exemplar Basepair signature: cWW-L-R-R-R-R-R-cWW History status: Exact match	10	1
237	IL_13013.1 View exemplar Basepair signature: cWW-tWW-L-tWH-R-R-R-cSH-R-R-L-tHH-tHS-cWW History status: Exact match	21	1
238	IL_22745.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	5	1
239	IL_65055.1 View exemplar Basepair signature: cWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	23	1
240	IL_76103.1 View exemplar Basepair signature: cWW-R-cWW History status: Exact match Stack outside cWW (1)	5	1
241	IL_94501.1 View exemplar Basepair signature: cWW-cWW-cWW-tHW-cWH-cSH-cWH-cSH-tHS-cWW History status: Exact match	15	1
242	IL_80355.1 View exemplar Basepair signature: cWW-tWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	23	1
243	IL_89731.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R-cWW History status: Exact match	10	1
244	IL_96942.1 View exemplar Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW History status: Exact match	14	1
245	IL_41414.1 View exemplar Basepair signature: cWW-L-R-L-cWW-tWH-cWW-L-L-L-R-L-R-cSH-L-L History status: Exact match	0	1
246	IL_61242.1 View exemplar Basepair signature: cWW-cWW-L-R-L-R-cWW History status: Exact match	0	1
247	IL_74184.1 View exemplar Basepair signature: cWW-L-tHS-L-cWW-L-L-L History status: Exact match	0	1
248	IL_82988.1 View exemplar Basepair signature: cWW-cWW-L-L-tHS-cWW History status: Exact match	10	1
249	IL_13394.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R History status: Exact match	0	1
250	IL_22821.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L History status: Exact match Pseudoknot (1)	0	1
251	IL_34590.1 View exemplar Basepair signature: cWW-L-R-R-R-R-L-L-tHH-cSH-tWH-tHS-cWW History status: Exact match 9x9 Sarcin-Ricin with pseudoknotted region; G-bulge (1)	18	1
252	IL_45988.1 View exemplar Basepair signature: cWW-R-tWH-tHS-cWW History status: Exact match	9	1
253	IL_56105.1 View exemplar Basepair signature: cWW-tSH-tSH-cWW-L History status: Exact match	8	1
254	IL_76900.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW History status: Exact match Kink-turn (1)	12	1
255	IL_85931.1 View exemplar Basepair signature: cWW-cSW-tSH-tHH-tSS-tSS-R-R-cWW History status: Exact match	13	1
256	IL_03420.1 View exemplar Basepair signature: cWW-R-cSH-tWH-tSH-tHS-cWW History status: Exact match	13	1
257	IL_16702.1 View exemplar Basepair signature: cWW-tSH-tWH-tHW-cWH-tSS-tHW-tHH-cWW History status: Exact match	15	1
258	IL_58390.1 View exemplar Basepair signature: cWW-bif-tSW-L-L-L-cWW-cSW-R-cWW History status: Exact match	14	1
259	IL_80446.1 View exemplar Basepair signature: cWW-L-R-R-L-tSH-tHW-cWW History status: Exact match Other IL (1)	11	1
260	IL_97253.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L-R-L History status: Exact match	0	1
261	IL_19296.1 View exemplar Basepair signature: cWW-cSS-L-tHW-tSS-L-L-L-L-L-L-cWW History status: Exact match	14	1
262	IL_29821.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-cWW History status: Exact match	10	1
263	IL_41593.1 View exemplar Basepair signature: cWW-cHW-tHW-tHW-tHW-bif-cWW History status: Exact match	14	1
264	IL_74271.1 View exemplar Basepair signature: cWW-L-L-L-tWH-L-L-L-cWW History status: Exact match	12	1
265	IL_46112.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L History status: Exact match	0	1
266	IL_56283.1 View exemplar Basepair signature: cWW-L-L-L-L-L-cWW History status: Exact match	9	1
267	IL_66497.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-bif-cWW History status: Exact match	12	1
268	IL_94878.1 View exemplar Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW History status: Exact match	26	1
269	IL_38271.1 View exemplar Basepair signature: cWW-L-R-cSW-cWW History status: Exact match Self complementary (1)	8	1
270	IL_49850.1 View exemplar Basepair signature: cWW-L-R-L-L-L-cWW-cSW-R-cWW History status: Exact match	13	1
271	IL_68913.1 View exemplar Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW History status: Exact match	14	1
272	IL_80617.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	1
273	IL_90157.1 View exemplar Basepair signature: cWW-L-L-L-L-tHH-cWS-cWW History status: Exact match	12	1
274	IL_97439.1 View exemplar Basepair signature: cWW-R-cWW History status: Exact match	5	1
275	IL_41687.1 View exemplar Basepair signature: cWW-L-R-cSW-cSH-cWW History status: Exact match	8	1
276	IL_61275.1 View exemplar Basepair signature: cWW-L-R-tHW-cWW History status: Exact match	8	1
277	IL_74719.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: Exact match Double sheared (1)	8	1
278	IL_92343.1 View exemplar Basepair signature: cWW-L-R-R-R-L-L-cWW History status: Exact match	10	1
279	IL_34780.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW History status: Exact match Kink-turn (1)	0	1
280	IL_46401.1 View exemplar Basepair signature: cWW-L-L-L-L-tHH-cWW History status: Exact match	10	1
281	IL_86571.1 View exemplar Basepair signature: cWW-cSW-tHS-cWW-cWW-cWW History status: Exact match	11	1
282	IL_04356.1 View exemplar Basepair signature: cWW-tWH-tWH-L-R-L-tWW-cWW History status: Exact match	13	1
283	IL_69091.1 View exemplar Basepair signature: cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L History status: Exact match	0	1
284	IL_90348.1 View exemplar Basepair signature: cWW-cSW-L-cWW-L History status: Exact match	7	1
285	IL_31504.1 View exemplar Basepair signature: cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L History status: Exact match	0	1
286	IL_53529.1 View exemplar Basepair signature: cWW-L-cWH-R-R-cWW History status: Exact match	8	1
287	IL_61812.1 View exemplar Basepair signature: cWW-cWW-tSH-tHW-cSH-tHH-tHS-cWW-cWW History status: Exact match 9x8 Sarcin-Ricin; G-bulge (1)	17	1
288	IL_74736.1 View exemplar Basepair signature: cWW-tSH-L-R-R-L-cWW History status: Exact match	9	1
289	IL_14397.1 View exemplar Basepair signature: cWW-tWH-tHH-tHS-cWW History status: Exact match	10	1
290	IL_46461.1 View exemplar Basepair signature: cWW-L-tHH-L-tHS-L-cWW-L-L-L-L-R-L-R-tSW-R-R-L-R-L-R-L-R History status: Exact match	0	1
291	IL_78120.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-bif-cWW History status: Exact match	12	1
292	IL_04667.1 View exemplar Basepair signature: cWW-tWH-cSW-L-R-R-L-tHS-cWW History status: Exact match	13	1
293	IL_50789.1 View exemplar Basepair signature: cWW-L-L-L-cWW History status: Exact match	7	1
294	IL_69457.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW History status: Exact match	13	1
295	IL_31890.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L History status: Exact match	0	1
296	IL_42092.1 View exemplar Basepair signature: cWW-tSH-L-L-L-cWW History status: Exact match Isolated basepair with bulged bases (1)	9	1
297	IL_61852.1 View exemplar Basepair signature: cWW-cWW-tSH-tWH-tHS-tSS-tSS-R-cWW History status: Exact match Kink-turn (1)	14	1
298	IL_84315.1 View exemplar Basepair signature: cWW-tHS-cWS-R-tSW-R-R-cWW History status: Exact match	10	1
299	IL_93094.1 View exemplar Basepair signature: cWW-L-tHH-L-tHS-L-cWW History status: Exact match Reverse kink-turn (1)	0	1
300	IL_15795.1 View exemplar Basepair signature: cWW-cSH-R-cWW History status: Exact match Minor groove platform (1)	6	1
301	IL_23735.1 View exemplar Basepair signature: cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW History status: Exact match	26	1
302	IL_35058.1 View exemplar Basepair signature: cWW-tSW-L-cWS-tSW-R-R-cWW History status: Exact match Symmetric double minor groove platform (1)	9	1
303	IL_46732.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: Exact match	8	1
304	IL_56501.1 View exemplar Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW History status: Exact match 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)	13	1

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Nucleotide numbers

Exact match 304;

Internal Loop Motif Atlas Release 3.13 Download Csv Json

Internal Loop Motif Atlas Release 3.13

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