Internal Loop Motif Atlas Release 3.13

#	Motif	Core Nts	Instances
1	IL_89407.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW pair (190) Isolated cWH basepair (11) Isolated non-canonical cWW with bulges (7) Intercalated tWH (3) Self complementary (2) Isolated non-canonical cWW contact (2) Decoding loop related (1) Single bulged G, near cWW (1) Other IL (1) Multiple bulged bases, near cWW (1) Isolated cWS basepair (1)	6	267
2	IL_80007.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged A (85) Major groove intercalation (6) Multiple bulged bases (6) Stack outside cWW (3) Major groove platform (1)	4	107
3	IL_83039.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged U (61) Major groove intercalation (3) Multiple bulged bases (2) Bulged stacked bases (2)	4	69
4	IL_85877.2 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (53) Non canonical cWW and near pair (2)	8	56
5	IL_11156.5 View exemplar Basepair signature: cWW-R-cWW History status: Exact match Single stack bend (17) Decoding loop related (13) Stack and bulge (2) Single stack bend with SAM intercalation (2) Intercalated cWW (1) Not an internal loop (1)	5	46
6	IL_80663.4 View exemplar Basepair signature: cWW-tHS-cSH-cWW History status: Exact match Major groove platform (27) Major groove platform; stack outside cWW (9)	5	45
7	IL_06437.3 View exemplar Basepair signature: cWW-tSH-cWW History status: Exact match Minor groove platform (38) Single bulged A (2) Minor groove platform related (1) Minor groove platform, major groove intercalation (1)	5	42
8	IL_12786.3 View exemplar Basepair signature: cWW-cWH-cWW History status: Exact match Isolated cWH basepair (31) Self complementary (1) cWH basepair with bulged bases (1) Decoding loop with one bulged A (1) Other IL (1) Isolated non-canonical cWW pair (1)	6	36
9	IL_13730.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (22) Major groove intercalation (10)	4	35
10	IL_29549.3 View exemplar Basepair signature: cWW-tSS-L-tSH-tHS-tHS-cWW History status: Exact match Kink-turn (29) Kink-turn with non-sequential stacking (4)	12	33
11	IL_61258.3 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged C (30) Single bulged A (1)	4	32
12	IL_56467.3 View exemplar Basepair signature: cWW-tSH-tHS-tHS-cWW History status: Exact match Triple sheared (20) Double sheared with non-canonical cWW (7) AAA cross-strand stack (4) Other IL (1)	10	32
13	IL_59137.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged G (29) SSU/LSU pseudoknot (2) Major groove intercalation (1)	4	32
14	IL_09705.3 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: Exact match Double sheared (23) Other IL (2) Double sheared; A in syn (1) tSH-tHW (1)	8	27
15	IL_75892.2 View exemplar Basepair signature: cWW-tWH-cSH-L-cWS-cWW History status: Exact match C-loop (19) C-loop with bulged stacked A's (1)	7	20
16	IL_53523.3 View exemplar Basepair signature: cWW-tWH-L-tHS-cWW History status: Exact match UAA/GAN (14) UAA/GAN variation (3) UAA/GAN related (1)	9	18
17	IL_00168.3 View exemplar Basepair signature: cWW-cSW-cWW History status: Exact match Major groove minor groove platform; mini C-loop (12) Major groove intercalation (2) Minor groove platform, major groove intercalation (1)	6	17
18	IL_70995.2 View exemplar Basepair signature: cWW-tSH-L-cWW History status: Exact match Major groove platform; stack outside cWW (11)	6	15
19	IL_39521.2 View exemplar Basepair signature: cWW-tSH-tHW-tHS-cWW History status: Exact match tSH-tWH-tHS (14) 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)	10	15
20	IL_04346.3 View exemplar Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 8x7 Sarcin-Ricin; G-bulge (14)	15	14
21	IL_81326.1 View exemplar Basepair signature: cWW-L-cWW-cWW History status: Exact match Decoding loop related (2)	7	14
22	IL_87630.2 View exemplar Basepair signature: cWW-tSH-cSH-cWW History status: Exact match Major groove platform with extra pair (10) Other IL (1)	7	14
23	IL_95485.3 View exemplar Basepair signature: cWW-cSH-cWW-cWW History status: Exact match Major groove platform with extra cWW (8) Isolated basepair with bulged bases (1) Major groove minor groove platform with extra cWW (1)	7	13
24	IL_50676.2 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (5) Pseudoknot (3) Other IL (1)	8	13
25	IL_35110.3 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 7x6 Sarcin-Ricin; G-bulge (8) Sarcin-Ricin target in LSU H95; G-bulge (5)	13	13
26	IL_67621.2 View exemplar Basepair signature: cWW-cWS-cWW History status: Exact match Isolated cWS basepair (8) Isolated near cWW basepair (2)	6	13
27	IL_38958.3 View exemplar Basepair signature: cWW-tHS-cWW History status: Exact match Isolated tHS basepair with bulges (12)	6	12
28	IL_60676.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Not an internal loop (2) Minor groove platform (2) Single stack bend (2) Minor groove platform, major groove intercalation (1) Major groove intercalation (1)	5	12
29	IL_49607.4 View exemplar Basepair signature: cWW-tSH-tHW-cWW History status: Exact match tSH-tHW (7) Other IL (1)	8	11
30	IL_84473.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW pair (7) Stack and bulge (1)	6	11
31	IL_09818.3 View exemplar Basepair signature: cWW-tHS-cWW History status: Exact match Major groove platform with intercalation (5) Minor groove platform (2) Other IL (1)	5	10
32	IL_81328.3 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Major groove intercalation (6) Stack outside cWW (2) Single stack bend (1)	5	9
33	IL_35167.2 View exemplar Basepair signature: cWW-R-tWH-L-tHS-cWW History status: Exact match UAA/GAN (2) UAA/GAN with extra stack (1) tSH-tHS-tHW (1)	10	9
34	IL_94431.2 View exemplar Basepair signature: cWW-cSH-cWS-cWW History status: Exact match Minor groove platform (9)	6	9
35	IL_19389.1 View exemplar Basepair signature: cWW-L-cSH-cWW History status: Exact match Major groove platform with intercalated tWH (5) Left turn (2)	6	8
36	IL_97601.3 View exemplar Basepair signature: cWW-cSH-tHW-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (6) 8-nt loop receptor (2)	8	8
37	IL_81389.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-cWW History status: Exact match UAA/GAN related (5) UAA/GAN variation (3)	9	8
38	IL_40979.3 View exemplar Basepair signature: cWW-cWW-tWW-cWW History status: Exact match tWW and non-canonical cWW (6) Tandem non-canonical cWW pairs (1) tWW and near cWH (1)	8	8
39	IL_36612.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged U (4) Bulged stacked bases (2)	4	7
40	IL_22946.1 View exemplar Basepair signature: cWW-cHH-cWW History status: Exact match Major groove platform (4) Major groove intercalation (1)	5	7
41	IL_66584.3 View exemplar Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW History status: Exact match tSH-tSH-tHH-tHS (3) Quadruple sheared (2)	12	7
42	IL_15861.3 View exemplar Basepair signature: cWW-L-L-L-tSW-cSH-cWW History status: Exact match SSU/LSU pseudoknot (7)	10	7
43	IL_90991.3 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (4)	4	6
44	IL_58103.3 View exemplar Basepair signature: cWW-cSH-L-cWS-tSW-R-R-cWW History status: Exact match Symmetric double minor groove platform (5)	10	6
45	IL_66414.3 View exemplar Basepair signature: cWW-cWW-tSH-tHS-tHS-L-R-cWW History status: Exact match Triple sheared with non-canonical cWW (4)	14	6
46	IL_94518.2 View exemplar Basepair signature: cWW-cWW-L-R-cWW-L-R-cWW History status: Exact match Other IL (1) Tandem non-canonical cWW pairs with near WC pairs (1) Double sheared; A in syn; two near cWW pairs (1)	12	6
47	IL_56455.1 View exemplar Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW History status: Exact match Bacterial 5S Loop E (6)	18	6
48	IL_14148.3 View exemplar Basepair signature: cWW-cWW-tSH-cWW History status: Exact match Minor groove platform with extra cWW (5)	7	6
49	IL_17470.3 View exemplar Basepair signature: cWW-R-tHW-tHW-tWW-cWW History status: Exact match tHW-tHW cross-strand stack (6)	11	6
50	IL_51265.1 View exemplar Basepair signature: cWW-tSS-L-tSH-tHS-cWW History status: Exact match Kink-turn from U4 (5) Kink-turn from T-box riboswitch (1)	10	6
51	IL_85402.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: Exact match Minor groove platform related (2) UAA/GAN related (1) Multiple bulged bases with non-canonical cWW (1)	9	6
52	IL_94181.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Intercalated cWS (2) Other IL (1) Single base bend (1) 90 degree turn (1) Single stack bend (1)	5	6
53	IL_90691.1 View exemplar Basepair signature: cWW-cSH-R-cWW-cWW History status: Exact match 8-nt loop receptor (2) Other IL (1) Major groove minor groove platform with extra cWW (1)	8	6
54	IL_60992.3 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW History status: Exact match	16	5
55	IL_55953.1 View exemplar Basepair signature: cWW-tSH-R-tHS-L-bif-cWW History status: Exact match	12	5
56	IL_49767.2 View exemplar Basepair signature: cWW-cWW-tWH-L-tHS-cWW History status: Exact match UAA/GAN with extra cWW (3)	11	5
57	IL_77853.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged A (2) Major groove intercalation (1)	4	5
58	IL_17069.1 View exemplar Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW History status: Exact match Kink-turn related (3)	13	5
59	IL_29978.2 View exemplar Basepair signature: cWW-L-L-L-tHS-cWW History status: Exact match	9	5
60	IL_23544.1 View exemplar Basepair signature: cWW-L-R-R-cWW History status: Exact match	7	5
61	IL_83162.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHH-cWW History status: Exact match tHS double platform (3)	11	5
62	IL_47154.2 View exemplar Basepair signature: cWW-cSW-tHS-cWW History status: Exact match	8	5
63	IL_28279.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match Stack and bulge (1)	6	5
64	IL_54997.1 View exemplar Basepair signature: cWW-tWW-cWW History status: Exact match Isolated tWW turn (4)	6	5
65	IL_57188.1 View exemplar Basepair signature: cWW-tWW-cSH-L-tWW-cSH-cWW History status: Exact match Kink-turn related (3)	11	5
66	IL_96042.1 View exemplar Basepair signature: cWW-cWW-cSH-R-cWW History status: Exact match Major groove minor groove platform with extra cWW (4)	8	5
67	IL_08296.1 View exemplar Basepair signature: cWW-tSH-R-R-cWW History status: Exact match UAA/GAN related, with intercalation (2)	8	4
68	IL_45944.2 View exemplar Basepair signature: cWW-L-L-tWH-L-L-L-cWW History status: Exact match	11	4
69	IL_68506.1 View exemplar Basepair signature: cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW History status: Exact match	17	4
70	IL_08376.1 View exemplar Basepair signature: cWW-tWH-tSW-L-cWS-cWW History status: Exact match C-loop (4)	7	4
71	IL_34626.2 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match Isolated non-canonical cWW pair (1)	7	4
72	IL_83121.1 View exemplar Basepair signature: cWW-cSS-R-cWW History status: Exact match 180 degree turn (1)	5	4
73	IL_34915.2 View exemplar Basepair signature: cWW-R-tWH-cSH-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (4)	9	4
74	IL_97697.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L History status: Exact match Reverse turn (4)	11	4
75	IL_66745.1 View exemplar Basepair signature: cWW-L-R-tHS-cWW-cWW History status: Exact match	10	4
76	IL_50949.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW pair (3) Isolated non-canonical cWW with bulges (1)	6	4
77	IL_90538.2 View exemplar Basepair signature: cWW-tSS-L-tSH-tSS-tHS-L-R-L-cWW History status: Exact match Kink-turn (4)	13	4
78	IL_19954.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-cWW-cWW History status: Exact match	12	4
79	IL_67474.2 View exemplar Basepair signature: cWW-R-R-cWW History status: Exact match 180 degree turn (2)	6	4
80	IL_60695.1 View exemplar Basepair signature: cWW-L-R-R-R-cWW History status: Exact match	8	4
81	IL_07527.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: Exact match Multiple bulged bases with near cWW (1)	9	4
82	IL_74051.1 View exemplar Basepair signature: cWW-tSS-tSH-L-tHS-cWW-L History status: Exact match Kink-turn (3)	11	3
83	IL_82426.2 View exemplar Basepair signature: cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW History status: Exact match Part of G-quadruplex (2)	14	3
84	IL_02349.2 View exemplar Basepair signature: cWW-tSH-tWH-cSH-tWH-tHS-cWW History status: Exact match 8x6 Sarcin-Ricin with bulged A; G-bulge (3)	13	3
85	IL_52451.3 View exemplar Basepair signature: cWW-cHW-cWW-cWW History status: Exact match	8	3
86	IL_91482.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Bulged stacked bases (1) Major groove intercalation (1)	4	3
87	IL_68780.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-R-cWW History status: Exact match Kink-turn (3)	12	3
88	IL_90106.3 View exemplar Basepair signature: cWW-tHH-tHS-cWW History status: Exact match	8	3
89	IL_26769.1 View exemplar Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW History status: Exact match tSH-tWH-tHS-cWW (3)	12	3
90	IL_08966.2 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match Isolated non-canonical cWW contact (2)	6	3
91	IL_27393.3 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: Exact match	10	3
92	IL_58960.1 View exemplar Basepair signature: cWW-L-cWW-L-tWW-L-R-L History status: Exact match	11	3
93	IL_17222.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	4	3
94	IL_38634.2 View exemplar Basepair signature: cWW-cWH-tWS-cWW History status: Exact match cWH basepair and non-canonical AC (3)	8	3
95	IL_09732.2 View exemplar Basepair signature: cWW-cWW-R-cWW History status: Exact match	7	3
96	IL_66693.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW-cWW History status: Exact match Triple non-canonical cWW pairs (1)	10	3
97	IL_23663.2 View exemplar Basepair signature: cWW-cSH-cWW-cWW History status: Exact match Isolated non-canonical cWW pair (1)	7	3
98	IL_87284.1 View exemplar Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW History status: Exact match tSH-tHW-tWH-tHS (3)	12	3
99	IL_75283.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW History status: Exact match Kink-turn related (1)	18	3
100	IL_79393.3 View exemplar Basepair signature: cWW-L-R-R-R-R-R-L-cWW History status: Exact match	11	3
101	IL_90600.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: Exact match	8	3
102	IL_54678.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	4	3
103	IL_75461.1 View exemplar Basepair signature: cWW-tSS-cSS-L-R-cWW History status: Exact match 180 degree turn (3)	7	3
104	IL_93830.2 View exemplar Basepair signature: cWW-cWW-bif-R-cSH-tWH-tHS-cWW History status: Exact match 7x7 Sarcin-Ricin with intercalated A; G-bulge (3)	14	3
105	IL_57018.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged G (1) Bulged stacked bases (1) Single bulged A (1)	4	3
106	IL_16109.2 View exemplar Basepair signature: cWW-R-cSH-tWH-tHS-cWW History status: Exact match 5x5 Sarcin-Ricin with intercalated A; G-bulge (2) AAA cross-strand stack (1)	10	3
107	IL_24606.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW History status: Exact match 8x6 Sarcin-Ricin with inserted Y; G-bulge (3)	14	3
108	IL_35904.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW History status: Exact match Kink-turn (3)	12	3
109	IL_48280.1 View exemplar Basepair signature: cWW-tSH-R-cWW History status: Exact match	7	3
110	IL_24905.3 View exemplar Basepair signature: cWW-cSW-R-cWW History status: Exact match	7	3
111	IL_71960.1 View exemplar Basepair signature: cWW-cSH-cWW History status: Exact match Single bulged A (1) Minor groove platform (1)	5	3
112	IL_64900.1 View exemplar Basepair signature: cWW-cWW-tSS-tSH-L-tHS-R-cWW-L History status: Exact match Kink-turn (3)	14	3
113	IL_68057.1 View exemplar Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW History status: Exact match Kink-turn (3)	12	3
114	IL_80138.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: Exact match Isolated basepair with bulged bases (1)	8	3
115	IL_01789.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match Intercalated tWH (1)	6	3
116	IL_34470.1 View exemplar Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2)	17	2
117	IL_16456.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-tSS-R-cWW History status: Exact match Kink-turn (2)	11	2
118	IL_26351.1 View exemplar Basepair signature: cWW-cWW-tSH-tWH-tHW-tHS-cWW-cWW History status: Exact match tSH-tWH-tHS with extra cWW pairs (1)	14	2
119	IL_19244.1 View exemplar Basepair signature: cWW-L-L-L-cWW History status: Exact match	7	2
120	IL_36973.3 View exemplar Basepair signature: cWW-tSH-L-R-R-R-L-L-cWW-cWW History status: Exact match	14	2
121	IL_53318.1 View exemplar Basepair signature: cWW-cWW-tWH-tSH-tHS-cWW History status: Exact match Triple sheared related (1)	10	2
122	IL_92224.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged U (1)	4	2
123	IL_86428.1 View exemplar Basepair signature: cWW-tHW-cWW-L-cSH-R-tHS-cWW-cWW History status: Exact match Triple sheared related (1)	12	2
124	IL_58760.1 View exemplar Basepair signature: cWW-tSH-R-tHH-tHS-cWW History status: Exact match	11	2
125	IL_77870.1 View exemplar Basepair signature: cWW-L-R-L-tHS-L-cWW-L-cWW History status: Exact match	13	2
126	IL_27825.1 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match Tandem non-canonical cWW pairs (1)	6	2
127	IL_42032.1 View exemplar Basepair signature: cWW-cSH-cWW-tWH-L-cWW-L-L History status: Exact match	11	2
128	IL_92440.1 View exemplar Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW History status: Exact match tWH-tWH-tHW-tHW (2)	14	2
129	IL_19557.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	5	2
130	IL_86578.1 View exemplar Basepair signature: cWW-R-cWW History status: Exact match Isolated non-canonical cWW pair (1)	5	2
131	IL_95511.1 View exemplar Basepair signature: cWW-R-R-R-tSW-L-L-cWW History status: Exact match	11	2
132	IL_80884.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-L-L History status: Exact match	10	2
133	IL_90423.1 View exemplar Basepair signature: cWW-cWW-tHH-cWW History status: Exact match	8	2
134	IL_27900.1 View exemplar Basepair signature: cWW-tSH-cWW History status: Exact match Multiple bulged bases (1) Minor groove platform (1)	5	2
135	IL_54461.1 View exemplar Basepair signature: cWW-R-tHS-cWW History status: Exact match	7	2
136	IL_75238.1 View exemplar Basepair signature: cWW-cWW-cSW-cSH-cWW History status: Exact match	9	2
137	IL_19724.1 View exemplar Basepair signature: cWW-cSH-R-R-cWW History status: Exact match	7	2
138	IL_78994.1 View exemplar Basepair signature: cWW-cSW-cWW-cWW History status: Exact match	8	2
139	IL_95688.1 View exemplar Basepair signature: cWW-L-cSS-cSS-L-R-cWW History status: Exact match	11	2
140	IL_28060.3 View exemplar Basepair signature: cWW-tHH-L-cWS-R-cWW History status: Exact match Major groove minor groove platform with tHH (2)	8	2
141	IL_39279.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (2)	8	2
142	IL_70285.1 View exemplar Basepair signature: cWW-L-R-cWW-L-L-tSW-L-cWW History status: Exact match	13	2
143	IL_05062.4 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: Exact match Triple sheared related (2)	11	2
144	IL_28202.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: Exact match	8	2
145	IL_44904.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged A (1)	4	2
146	IL_90612.1 View exemplar Basepair signature: cWW-tWH-tWH-tWH-L-R-R-L-tWW-cWW History status: Exact match	14	2
147	IL_18369.2 View exemplar Basepair signature: cWW-cSH-tHS-cWW History status: Exact match	8	2
148	IL_45034.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: Exact match	10	2
149	IL_67703.1 View exemplar Basepair signature: cWW-tWW-L-tWH-R-R-R-R-cSH-R-R-L-tHH-tHS-cWW History status: Exact match	22	2
150	IL_88269.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-tWW-cWW History status: Exact match 6x5 Sarcin-Ricin; G-bulge (2)	11	2
151	IL_51590.1 View exemplar Basepair signature: cWW-cSH-tWH-cSH-cWW-cWW History status: Exact match C-loop with extra cWW pair (1) Other IL (1)	9	2
152	IL_81522.1 View exemplar Basepair signature: cWW-cWS-L-cWW History status: Exact match Major groove minor groove platform with intercalation; mini C-loop (2)	6	2
153	IL_99373.1 View exemplar Basepair signature: cWW-bif-L-cWW History status: Exact match	7	2
154	IL_36143.2 View exemplar Basepair signature: cWW-R-cWW History status: Exact match	5	2
155	IL_18894.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: Exact match Quadruple sheared (2)	12	2
156	IL_34378.1 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match	6	2
157	IL_57850.1 View exemplar Basepair signature: cWW-tHH-cWW History status: Exact match Isolated non-canonical cWW pair (1)	6	2
158	IL_25657.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW History status: Exact match Pseudoknot (1)	13	2
159	IL_41177.1 View exemplar Basepair signature: cWW-cWW-cSH-cSH-tHS-cWW History status: Exact match 8-nt loop receptor (1)	8	1
160	IL_52138.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: Exact match	8	1
161	IL_99902.1 View exemplar Basepair signature: cWW-L-R-R-R-R-R-cWW History status: Exact match	10	1
162	IL_19048.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cSH-L-R-cWW-cWW History status: Exact match	14	1
163	IL_29509.1 View exemplar Basepair signature: cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW History status: Exact match 8x7 Sarcin-Ricin; G-bulge (1)	15	1
164	IL_65055.1 View exemplar Basepair signature: cWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	23	1
165	IL_76103.1 View exemplar Basepair signature: cWW-R-cWW History status: Exact match Stack outside cWW (1)	5	1
166	IL_94501.1 View exemplar Basepair signature: cWW-cWW-cWW-tHW-cWH-cSH-cWH-cSH-tHS-cWW History status: Exact match	15	1
167	IL_13013.1 View exemplar Basepair signature: cWW-tWW-L-tWH-R-R-R-cSH-R-R-L-tHH-tHS-cWW History status: Exact match	21	1
168	IL_22745.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	5	1
169	IL_80355.1 View exemplar Basepair signature: cWW-tWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	23	1
170	IL_89731.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R-cWW History status: Exact match	10	1
171	IL_96942.1 View exemplar Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW History status: Exact match	14	1
172	IL_41414.1 View exemplar Basepair signature: cWW-L-R-L-cWW-tWH-cWW-L-L-L-R-L-R-cSH-L-L History status: Exact match	21	1
173	IL_61242.1 View exemplar Basepair signature: cWW-cWW-L-R-L-R-cWW History status: Exact match	10	1
174	IL_74184.1 View exemplar Basepair signature: cWW-L-tHS-L-cWW-L-L-L History status: Exact match	11	1
175	IL_82988.1 View exemplar Basepair signature: cWW-cWW-L-L-tHS-cWW History status: Exact match	10	1
176	IL_45988.1 View exemplar Basepair signature: cWW-R-tWH-tHS-cWW History status: Exact match	9	1
177	IL_56105.1 View exemplar Basepair signature: cWW-tSH-tSH-cWW-L History status: Exact match	8	1
178	IL_76900.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW History status: Exact match Kink-turn (1)	12	1
179	IL_85931.1 View exemplar Basepair signature: cWW-cSW-tSH-tHH-tSS-tSS-R-R-cWW History status: Exact match Kink-turn (1)	13	1
180	IL_13394.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R History status: Exact match	21	1
181	IL_22821.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L History status: Exact match Pseudoknot (1)	17	1
182	IL_34590.1 View exemplar Basepair signature: cWW-L-R-R-R-R-L-L-tHH-cSH-tWH-tHS-cWW History status: Exact match 9x9 Sarcin-Ricin with pseudoknotted region; G-bulge (1)	18	1
183	IL_58390.1 View exemplar Basepair signature: cWW-bif-tSW-L-L-L-cWW-cSW-R-cWW History status: Exact match Minor groove platform related (1)	14	1
184	IL_80446.1 View exemplar Basepair signature: cWW-L-R-R-L-tSH-tHW-cWW History status: Exact match Other IL (1)	11	1
185	IL_97253.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L-R-L History status: Exact match		1
186	IL_03420.1 View exemplar Basepair signature: cWW-R-cSH-tWH-tSH-tHS-cWW History status: Exact match tSH-tHS-tHW (1)	13	1
187	IL_16702.1 View exemplar Basepair signature: cWW-tSH-tWH-tHW-cWH-tSS-tHW-tHH-cWW History status: Exact match	15	1
188	IL_41593.1 View exemplar Basepair signature: cWW-cHW-tHW-tHW-tHW-bif-cWW History status: Exact match	14	1
189	IL_74271.1 View exemplar Basepair signature: cWW-L-L-L-tWH-L-L-L-cWW History status: Exact match	12	1
190	IL_19296.1 View exemplar Basepair signature: cWW-cSS-L-tHW-tSS-L-L-L-L-L-L-cWW History status: Exact match	14	1
191	IL_29821.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-cWW History status: Exact match UAA/GAN with extra stack (1)	10	1
192	IL_46112.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L History status: Exact match	9	1
193	IL_56283.1 View exemplar Basepair signature: cWW-L-L-L-L-L-cWW History status: Exact match	9	1
194	IL_66497.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-bif-cWW History status: Exact match	12	1
195	IL_94878.1 View exemplar Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW History status: Exact match	26	1
196	IL_49850.1 View exemplar Basepair signature: cWW-L-R-L-L-L-cWW-cSW-R-cWW History status: Exact match Minor groove platform related (1)	13	1
197	IL_68913.1 View exemplar Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW History status: Exact match	14	1
198	IL_80617.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match Isolated non-canonical cWW contact (1)	6	1
199	IL_90157.1 View exemplar Basepair signature: cWW-L-L-L-L-tHH-cWS-cWW History status: Exact match	12	1
200	IL_97439.1 View exemplar Basepair signature: cWW-R-cWW History status: Exact match	5	1
201	IL_38271.1 View exemplar Basepair signature: cWW-L-R-cSW-cWW History status: Exact match Self complementary (1)	8	1
202	IL_41687.1 View exemplar Basepair signature: cWW-L-R-cSW-cSH-cWW History status: Exact match	8	1
203	IL_61275.1 View exemplar Basepair signature: cWW-L-R-tHW-cWW History status: Exact match	8	1
204	IL_74719.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: Exact match Double sheared (1)	8	1
205	IL_92343.1 View exemplar Basepair signature: cWW-L-R-R-R-L-L-cWW History status: Exact match	10	1
206	IL_46401.1 View exemplar Basepair signature: cWW-L-L-L-L-tHH-cWW History status: Exact match	10	1
207	IL_86571.1 View exemplar Basepair signature: cWW-cSW-tHS-cWW-cWW-cWW History status: Exact match	11	1
208	IL_34780.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW History status: Exact match Kink-turn (1)	16	1
209	IL_69091.1 View exemplar Basepair signature: cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L History status: Exact match	16	1
210	IL_90348.1 View exemplar Basepair signature: cWW-cSW-L-cWW-L History status: Exact match		1
211	IL_04356.1 View exemplar Basepair signature: cWW-tWH-tWH-L-R-L-tWW-cWW History status: Exact match	13	1
212	IL_53529.1 View exemplar Basepair signature: cWW-L-cWH-R-R-cWW History status: Exact match	8	1
213	IL_61812.1 View exemplar Basepair signature: cWW-cWW-tSH-tHW-cSH-tHH-tHS-cWW-cWW History status: Exact match 9x8 Sarcin-Ricin; G-bulge (1)	17	1
214	IL_74736.1 View exemplar Basepair signature: cWW-tSH-L-R-R-L-cWW History status: Exact match	9	1
215	IL_31504.1 View exemplar Basepair signature: cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L History status: Exact match	18	1
216	IL_46461.1 View exemplar Basepair signature: cWW-L-tHH-L-tHS-L-cWW-L-L-L-L-R-L-R-tSW-R-R-L-R-L-R-L-R History status: Exact match	28	1
217	IL_78120.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-bif-cWW History status: Exact match	12	1
218	IL_14397.1 View exemplar Basepair signature: cWW-tWH-tHH-tHS-cWW History status: Exact match	10	1
219	IL_50789.1 View exemplar Basepair signature: cWW-L-L-L-cWW History status: Exact match	7	1
220	IL_69457.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW History status: Exact match	13	1
221	IL_04667.1 View exemplar Basepair signature: cWW-tWH-cSW-L-R-R-L-tHS-cWW History status: Exact match Kink-turn related (1)	13	1
222	IL_42092.1 View exemplar Basepair signature: cWW-tSH-L-L-L-cWW History status: Exact match Isolated basepair with bulged bases (1)	9	1
223	IL_61852.1 View exemplar Basepair signature: cWW-cWW-tSH-tWH-tHS-tSS-tSS-R-cWW History status: Exact match Kink-turn (1)	14	1
224	IL_84315.1 View exemplar Basepair signature: cWW-tHS-cWS-R-tSW-R-R-cWW History status: Exact match	10	1
225	IL_93094.1 View exemplar Basepair signature: cWW-L-tHH-L-tHS-L-cWW History status: Exact match Reverse kink-turn (1)	11	1
226	IL_31890.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L History status: Exact match		1
227	IL_46732.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: Exact match	8	1
228	IL_56501.1 View exemplar Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW History status: Exact match 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)	13	1
229	IL_15795.1 View exemplar Basepair signature: cWW-cSH-R-cWW History status: Exact match Minor groove platform (1)	6	1
230	IL_23735.1 View exemplar Basepair signature: cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW History status: Exact match	26	1
231	IL_35058.1 View exemplar Basepair signature: cWW-tSW-L-cWS-tSW-R-R-cWW History status: Exact match Symmetric double minor groove platform (1)	9	1
232	IL_59724.1 View exemplar Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW History status: Exact match 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge (1)	15	1
233	IL_69979.1 View exemplar Basepair signature: cWW-L-R-R-R-R-L-L-L-cWW History status: Exact match	12	1
234	IL_98353.1 View exemplar Basepair signature: cWW-cWS-L-L-cWW History status: Exact match	8	1
235	IL_04736.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW History status: Exact match	12	1
236	IL_17765.1 View exemplar Basepair signature: cWW-tWH-cHW-L-tSS-cSS-cWW-R-L History status: Exact match	14	1
237	IL_44325.1 View exemplar Basepair signature: cWW-cWH-cWW-L History status: Exact match	6	1
238	IL_54670.1 View exemplar Basepair signature: cWW-tSH-L-R-tHH-tHS-cWW History status: Exact match tSH-tSH-tHH-tHS (1)	12	1
239	IL_62654.1 View exemplar Basepair signature: cWW-tSH-tHH-tHS-cWW History status: Exact match tSH-tHH-tHS (1)	10	1
240	IL_84409.1 View exemplar Basepair signature: cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L History status: Exact match	23	1
241	IL_93585.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-tWH-L-cSH-L History status: Exact match Kink-turn related (1)	11	1
242	IL_09986.1 View exemplar Basepair signature: cWW-L-R-L-tHW-L-L-cWW History status: Exact match	11	1
243	IL_32181.1 View exemplar Basepair signature: cWW-cWW-cWW-L-cSW-L-R-R-R-cWW History status: Exact match	15	1
244	IL_47108.1 View exemplar Basepair signature: cWW-L-R-L-tHH-L-cWW History status: Exact match	9	1
245	IL_56693.1 View exemplar Basepair signature: cWW-R-R-tWH-L-R-cWW History status: Exact match UAA/GAN related (1)	10	1
246	IL_95811.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-L-R-L History status: Exact match Vitamin B12 Aptamer (1)	11	1
247	IL_23934.1 View exemplar Basepair signature: cWW-R-tWH-tHS-cWW History status: Exact match tSH-tHW (1)	9	1
248	IL_60049.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: Exact match	7	1
249	IL_98711.1 View exemplar Basepair signature: cWW-tSH-tHW-tWW-cWW History status: Exact match tSH-tHW-tWW (1)	10	1
250	IL_17971.1 View exemplar Basepair signature: cWW-tWW-L-tWW-L-cWW History status: Exact match	10	1
251	IL_39287.1 View exemplar Basepair signature: cWW-L-R-L-tSH-tSS-L-tHS-cWW-L-L History status: Exact match Kink-turn related (1)	15	1
252	IL_63750.1 View exemplar Basepair signature: cWW-tSS-cSS-tWW-L-tSH-R-R-cWW History status: Exact match	11	1
253	IL_20245.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L History status: Exact match	18	1
254	IL_33557.1 View exemplar Basepair signature: cWW-tHH-R-L-R-L-L-R-L-R-cWW History status: Exact match Kink-turn related (1)	14	1
255	IL_56867.1 View exemplar Basepair signature: cWW-L-R-R-L-L-cSS-L-cWW-cWW History status: Exact match	13	1
256	IL_79682.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	1
257	IL_87677.1 View exemplar Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW History status: Exact match tWH-tWH-tHW-tHW (1)	12	1
258	IL_95942.1 View exemplar Basepair signature: cWW-L-R-L-L-L-L-L-cWW History status: Exact match	11	1
259	IL_00587.1 View exemplar Basepair signature: cWW-tSH-L-R-L-L-cWW History status: Exact match	10	1
260	IL_15978.1 View exemplar Basepair signature: cWW-tSH-L-cWS-cWW-L History status: Exact match	11	1
261	IL_24106.1 View exemplar Basepair signature: cWW-tSH-tWH-tWH-R-R-R-R-R-R-R-cWW History status: Exact match	17	1
262	IL_51366.1 View exemplar Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW History status: Exact match	20	1
263	IL_60171.1 View exemplar Basepair signature: cWW-L-tWH-R-R-R-cWW History status: Exact match Major groove platform; stack outside cWW (1)	9	1
264	IL_70801.1 View exemplar Basepair signature: cWW-cWW-L-R-tWW-L-R-L-cWW History status: Exact match	13	1
265	IL_98876.1 View exemplar Basepair signature: cWW-cWW-L-R-R-tHW-bif-cWW History status: Exact match	13	1
266	IL_06300.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW History status: Exact match	9	1
267	IL_39507.1 View exemplar Basepair signature: cWW-L-R-L-L-L-cWW History status: Exact match	9	1
268	IL_54896.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R History status: Exact match	12	1
269	IL_64040.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged U (1)	4	1
270	IL_75722.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW pair (1)	6	1
271	IL_11882.1 View exemplar Basepair signature: cWW-L-R-tWH-tWH-L-R-L-cWW History status: Exact match		1
272	IL_20463.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R History status: Exact match 7x11 Sarcin-Ricin with pseudoknotted region; G-bulge (1)	18	1
273	IL_34013.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	1
274	IL_47743.1 View exemplar Basepair signature: cWW-cSW-tWH-cSH-L-cWS-cWW History status: Exact match	9	1
275	IL_79734.1 View exemplar Basepair signature: cWW-R-R-R-R-cWW History status: Exact match	8	1
276	IL_95993.1 View exemplar Basepair signature: cWW-R-tSS-tWW-tWW-cWW History status: Exact match Kink-turn related (1)	11	1
277	IL_01335.1 View exemplar Basepair signature: cWW-cHW-L-L-L-L-L-L-L-L-cWW History status: Exact match	14	1
278	IL_18459.1 View exemplar Basepair signature: cWW-cWW-R-cWW History status: Exact match	7	1
279	IL_28512.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	13	1
280	IL_45257.1 View exemplar Basepair signature: cWW-tSH-cWH-tWH-tSS-tHW-tHH-cWW History status: Exact match	14	1
281	IL_64842.1 View exemplar Basepair signature: cWW-L-tWH-L-cWW-L-cSH History status: Exact match	10	1
282	IL_75840.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	1
283	IL_85630.1 View exemplar Basepair signature: cWW-tSH-L-R-L-R-L-cWW-L-cWW-L History status: Exact match	15	1
284	IL_94351.1 View exemplar Basepair signature: cWW-L-R-L-R-L-tHS-cWW History status: Exact match	11	1
285	IL_12750.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW History status: Exact match	15	1
286	IL_21121.1 View exemplar Basepair signature: cWW-tSW-cWS-cSH-tSW-tWH-R-R-cWW-cWW History status: Exact match		1
287	IL_34223.1 View exemplar Basepair signature: cWW-tWH-cSH-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (1)	8	1
288	IL_67834.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-tWW-R-R-R-R-R-R-R-R-R-R-R-R-cWW History status: Exact match	24	1
289	IL_89055.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-cWW-L-L History status: Exact match	16	1
290	IL_01502.1 View exemplar Basepair signature: cWW-L-R-R-L-L-L-L-cWW-cWW History status: Exact match	13	1
291	IL_16160.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match Isolated non-canonical cWW pair (1)	6	1
292	IL_51877.1 View exemplar Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW History status: Exact match	13	1
293	IL_82194.1 View exemplar Basepair signature: cWW-L-R-R-R-cWW History status: Exact match	8	1
294	IL_90922.1 View exemplar Basepair signature: cWW-tSH-tWH-tHS-tSS-tSS-R-cWW History status: Exact match Kink-turn (1)	12	1
295	IL_99645.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged G (1)	4	1
296	IL_28999.1 View exemplar Basepair signature: cWW-R-R-R-tSW-L-cWW History status: Exact match	10	1
297	IL_45481.1 View exemplar Basepair signature: cWW-L-R-cHW-L-L-tSW-L-cWW History status: Exact match	13	1
298	IL_55896.1 View exemplar Basepair signature: cWW-tSH-tHS-tWS-cWW History status: Exact match Triple sheared (1)	10	1
299	IL_85661.1 View exemplar Basepair signature: cWW-R-bif-tHW-tHS-cWW History status: Exact match	10	1
300	IL_22436.1 View exemplar Basepair signature: cWW-L-tWH-tHW-cWW-cWW History status: Exact match Kink-turn related (1)		1
301	IL_49109.1 View exemplar Basepair signature: cWW-tSH-tSH-tHW-tHH-tHS-cWW-cWW History status: Exact match tSH-tHW-tHH-tHS (1)	16	1
302	IL_96335.1 View exemplar Basepair signature: cWW-cSH-L-tSH-cWW-R-R-cWW History status: Exact match	11	1
303	IL_16348.1 View exemplar Basepair signature: cWW-cSH-R-R-cWW-cWW History status: Exact match	9	1
304	IL_36582.1 View exemplar Basepair signature: cWW-L-R-L-tHH-L-tWH-tHS-cWW History status: Exact match 8x6 Sarcin-Ricin with inserted A; G-bulge (1)	14	1

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Exact match 304;

Internal Loop Motif Atlas Release 3.13 Download CSV JSON annotations

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