4V6S | Motifs

105 Hairpin loops
172 Internal loops
24 Junction loops

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	HL_4V6S_001	1/AA/38:44	NA	NA
2	HL_4V6S_002	1/AA/85:91	NA	NA
3	HL_4V6S_003	1/AB/59:68	homologous HL_7RQB_001	NA HL_29414.1*
4	HL_4V6S_004	1/AB/86:96	NA	NA
5	HL_4V6S_005	1/AB/123:128	homologous HL_7RQB_003	NA HL_62869.3*
6	HL_4V6S_006	1/AB/137:142	geometric HL_6CK5_001	NA HL_79299.11*
7	HL_4V6S_007	1/AB/157:169	NA	NA
8	HL_4V6S_008	1/AB/194:201	geometric HL_7RQB_006	NA HL_23481.5*
9	HL_4V6S_009	1/AB/225:230	homologous HL_7RQB_007	NA HL_06569.2*
10	HL_4V6S_010	1/AB/246:252	homologous HL_7RQB_008	NA HL_67216.5*
11	HL_4V6S_011	1/AB/305:312	homologous HL_7RQB_010	NA HL_68493.6*
12	HL_4V6S_012	1/AB/319:323	homologous HL_7RQB_011	NA HL_98557.5*
13	HL_4V6S_013	1/AB/327:335	homologous HL_7RQB_012	NA HL_08002.6*
14	HL_4V6S_014	1/AB/381:393	NA	NA
15	HL_4V6S_015	1/AB/410:417	homologous HL_7RQB_014	NA HL_32512.8*
16	HL_4V6S_016	1/AB/462:467	homologous HL_7RQB_015	NA HL_43074.18*
17	HL_4V6S_017	1/AB/487:493	homologous HL_7RQB_016	NA HL_43074.18*
18	HL_4V6S_018	1/AB/543:550	NA	NA
19	HL_4V6S_019	1/AB/564:577	NA	NA
20	HL_4V6S_020	1/AB/611:617	NA	NA
21	HL_4V6S_021	1/AB/629:634	homologous HL_7RQB_020	NA HL_43074.18*
22	HL_4V6S_022	1/AB/640:648	NA	NA
23	HL_4V6S_023	1/AB/712:719	NA	NA
24	HL_4V6S_024	1/AB/743:754	NA	NA
25	HL_4V6S_025	1/AB/779:785	Other HL geometric HL_1P6V_001	NA HL_79299.11*
26	HL_4V6S_026	1/AB/826:831	geometric HL_7A0S_024	NA HL_15942.5*
27	HL_4V6S_027	1/AB/885:891	geometric HL_4V88_194	NA HL_18785.1*
28	HL_4V6S_028	1/AB/954:963	geometric HL_3RG5_006	NA HL_83315.1*
29	HL_4V6S_029	1/AB/978:985	NA	NA
30	HL_4V6S_030	1/AB/1064:1074	NA	NA
31	HL_4V6S_031	1/AB/1092:1099	geometric HL_361D_002	NA HL_18218.2*
32	HL_4V6S_032	1/AB/1172:1177	NA	NA
33	HL_4V6S_033	1/AB/1222:1227	homologous HL_7RQB_032	NA HL_43074.18*
34	HL_4V6S_034	1/AB/1281:1289	homologous HL_7RQB_033	NA HL_33239.17*
35	HL_4V6S_035	1/AB/1324:1330	geometric HL_7A0S_033	NA HL_86880.5*
36	HL_4V6S_036	1/AB/1363:1368	homologous HL_7RQB_035	NA HL_43074.18*
37	HL_4V6S_037	1/AB/1389:1398	homologous HL_7RQB_036	NA HL_78457.4*
38	HL_4V6S_038	1/AB/1450:1461	NA	NA
39	HL_4V6S_039	1/AB/1492:1498	homologous HL_7RQB_038	NA HL_86880.5*
40	HL_4V6S_040	1/AB/1533:1538	UNCG geometric HL_5D5L_003	NA HL_79299.11*
41	HL_4V6S_041	1/AB/1612:1619	NA	NA
42	HL_4V6S_042	1/AB/1630:1636	geometric HL_5U3G_001	NA HL_40469.1*
43	HL_4V6S_043	1/AB/1691:1696	UNCG geometric HL_1KUQ_001	NA HL_79299.11*
44	HL_4V6S_044	1/AB/1728:1731	geometric HL_7RQB_009	NA HL_69353.7*
45	HL_4V6S_045	1/AB/1752:1756	homologous HL_7RQB_044	NA HL_79272.3*
46	HL_4V6S_046	1/AB/1777:1787	homologous HL_7RQB_045	NA HL_43613.4*
47	HL_4V6S_047	1/AB/1806:1811	homologous HL_7RQB_046	NA HL_43074.18*
48	HL_4V6S_048	1/AB/1868:1873	geometric HL_5U3G_001	NA HL_40469.1*
49	HL_4V6S_049	1/AB/1910:1920	geometric HL_4V88_198	NA HL_30541.1*
50	HL_4V6S_050	1/AB/1949:1957	homologous HL_7RQB_049	NA HL_53760.4*
51	HL_4V6S_051	1/AB/2027:2036	NA	NA
52	HL_4V6S_052	1/AB/2142:2149	NA	NA
53	HL_4V6S_053	1/AB/2209:2215	geometric HL_5J7L_185	NA HL_16845.5*
54	HL_4V6S_054	1/AB/2246:2258	NA	NA
55	HL_4V6S_055	1/AB/2264:2276	NA	NA
56	HL_4V6S_056	1/AB/2303:2313	NA	NA
57	HL_4V6S_057	1/AB/2324:2331	NA	NA
58	HL_4V6S_058	1/AB/2356:2361	Other HL geometric HL_4C7O_001	NA HL_43074.18*
59	HL_4V6S_059	1/AB/2374:2379	homologous HL_7RQB_058	NA HL_43074.18*
60	HL_4V6S_060	1/AB/2404:2413	NA	NA
61	HL_4V6S_061	1/AB/2471:2479	homologous HL_7RQB_060	NA HL_36421.5*
62	HL_4V6S_062	1/AB/2528:2535	homologous HL_7RQB_061	NA HL_92681.5*
63	HL_4V6S_063	1/AB/2551:2557	geometric HL_361D_002	NA HL_18218.2*
64	HL_4V6S_064	1/AB/2594:2599	homologous HL_7RQB_063	NA HL_43074.18*
65	HL_4V6S_065	1/AB/2658:2663	homologous HL_7RQB_064	NA HL_43074.18*
66	HL_4V6S_066	1/AB/2701:2706	Ribsomal LSU H95 geometric HL_7A0S_064	NA HL_67719.1*
67	HL_4V6S_067	1/AB/2745:2759	homologous HL_7RQB_066	NA HL_56677.5*
68	HL_4V6S_068	1/AB/2796:2800	NA	NA
69	HL_4V6S_069	1/AB/2819:2827	homologous HL_7RQB_068	NA HL_05018.6*
70	HL_4V6S_070	1/AB/2856:2861	geometric HL_5U3G_001	NA HL_40469.1*
71	HL_4V6S_071	1/BA/12:22	NA	NA
72	HL_4V6S_073	1/BA/158:163	NA	NA
73	HL_4V6S_074	1/BA/186:191	NA	NA
74	HL_4V6S_076	1/BA/259:267	NA	NA
75	HL_4V6S_077	1/BA/296:301	NA	NA
76	HL_4V6S_078	1/BA/320:333	NA	NA
77	HL_4V6S_079	1/BA/342:347	NA	NA
78	HL_4V6S_080	1/BA/379:384	NA	NA
79	HL_4V6S_081	1/BA/419:424	NA	NA
80	HL_4V6S_083	1/BA/521:528	NA	NA
81	HL_4V6S_084	1/BA/617:623	NA	NA
82	HL_4V6S_085	1/BA/689:698	NA	NA
83	HL_4V6S_086	1/BA/726:731	NA	NA
84	HL_4V6S_087	1/BA/786:796	NA	NA
85	HL_4V6S_089	1/BA/862:867	NA	NA
86	HL_4V6S_090	1/BA/897:902	NA	NA
87	HL_4V6S_091	1/BA/963:972	NA	NA
88	HL_4V6S_092	1/BA/1012:1017	NA	NA
89	HL_4V6S_093	1/BA/1028:1033	NA	NA
90	HL_4V6S_094	1/BA/1076:1081	NA	NA
91	HL_4V6S_095	1/BA/1089:1096	NA	NA
92	HL_4V6S_096	1/BA/1134:1140	NA	NA
93	HL_4V6S_098	1/BA/1265:1270	NA	NA
94	HL_4V6S_099	1/BA/1314:1323	NA	NA
95	HL_4V6S_100	1/BA/1356:1366	NA	NA
96	HL_4V6S_101	1/BA/1449:1454	NA	NA
97	HL_4V6S_102	1/BA/1515:1520	NA	NA
98	HL_4V6S_103	1/BC/13:23	NA	NA
99	HL_4V6S_104	1/BC/31:41	NA	NA
100	HL_4V6S_105	1/BC/54:62	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_4V6S_072	missing nts	NA
2	HL_4V6S_075	missing nts	NA
3	HL_4V6S_082	missing nts	NA
4	HL_4V6S_088	missing nts	NA
5	HL_4V6S_097	missing nts	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	IL_4V6S_001	1/AA/17:18, 1/AA/65:67	NA	NA
2	IL_4V6S_002	1/AA/23:28, 1/AA/56:60	NA	NA
3	IL_4V6S_003	1/AA/30:31, 1/AA/51:54	NA	NA
4	IL_4V6S_004	1/AA/34:38, 1/AA/44:48	NA	NA
5	IL_4V6S_005	1/AA/71:79, 1/AA/97:105	NA	NA
6	IL_4V6S_006	1/AB/24:30, 1/AB/510:516	NA	NA
7	IL_4V6S_007	1/AB/36:37, 1/AB/442:444	Single bulged A homologous IL_7RQB_002	NA IL_80007.16*
8	IL_4V6S_008	1/AB/43:44, 1/AB/434:436	Minor groove platform homologous IL_7RQB_003	NA IL_06437.11*
9	IL_4V6S_009	1/AB/80:85, 1/AB/97:106	NA	NA
10	IL_4V6S_010	1/AB/183:184, 1/AB/212:214	Single stack bend homologous IL_7RQB_005	NA IL_04038.4*
11	IL_4V6S_011	1/AB/188:194, 1/AB/201:208	8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_006	NA IL_04346.5*
12	IL_4V6S_012	1/AB/239:245, 1/AB/253:258	7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007	NA IL_35110.5*
13	IL_4V6S_013	1/AB/269:271, 1/AB/366:370	NA	NA
14	IL_4V6S_014	1/AB/274:281, 1/AB/359:363	NA	NA
15	IL_4V6S_015	1/AB/293:295, 1/AB/343:347	homologous IL_7RQB_013	NA IL_69440.1*
16	IL_4V6S_016	1/AB/481:484, 1/AB/496:509	homologous IL_7RQB_014	NA IL_60992.5*
17	IL_4V6S_017	1/AB/536:539, 1/AB/554:557	Double sheared geometric IL_4LFB_060	NA IL_09705.7*
18	IL_4V6S_018	1/AB/606:610, 1/AB/618:622	AAA cross-strand stack homologous IL_7RQB_016	NA IL_56467.6*
19	IL_4V6S_019	1/AB/672:674, 1/AB/806:808	homologous IL_7RQB_017	NA IL_01312.13*
20	IL_4V6S_020	1/AB/674:678, 1/AB/799:806	geometric IL_7RQB_018	NA IL_17470.5*
21	IL_4V6S_021	1/AB/697:698, 1/AB/763:765	Single bulged A geometric IL_4V9F_025	NA IL_80007.16*
22	IL_4V6S_022	1/AB/702:707, 1/AB/724:730	geometric IL_4V88_421	NA IL_86428.1*
23	IL_4V6S_023	1/AB/738:740, 1/AB/757:758	Major groove platform geometric IL_5J7L_264	NA IL_80663.10*
24	IL_4V6S_024	1/AB/775:777, 1/AB/787:791	Multiple bulged bases geometric IL_7RQB_023	NA IL_90991.5*
25	IL_4V6S_025	1/AB/843:845, 1/AB/934:935	Single base bend geometric IL_5IBB_340	NA IL_83121.7*
26	IL_4V6S_026	1/AB/845:848, 1/AB/930:934	NA	NA
27	IL_4V6S_027	1/AB/849:851, 1/AB/926:929	geometric IL_4P3T_002	NA IL_87332.1*
28	IL_4V6S_028	1/AB/856:862, 1/AB/915:921	7x7 Sarcin-Ricin with intercalated A; G-bulge geometric IL_5J7L_270	NA IL_93830.2*
29	IL_4V6S_029	1/AB/862:863, 1/AB/913:915	Minor groove platform geometric IL_4V9F_034	NA IL_06437.11*
30	IL_4V6S_030	1/AB/864:868, 1/AB/909:912	C-loop homologous IL_7RQB_029	NA IL_63596.4*
31	IL_4V6S_031	1/AB/870:872, 1/AB/905:907	Isolated cWS basepair homologous IL_7RQB_030	NA IL_67621.5*
32	IL_4V6S_032	1/AB/875:880, 1/AB/897:902	NA	NA
33	IL_4V6S_033	1/AB/880:881, 1/AB/895:897	NA	NA
34	IL_4V6S_034	1/AB/881:884, 1/AB/892:895	NA	NA
35	IL_4V6S_035	1/AB/992:996, 1/AB/1159:1162	Tandem non-canonical cWW pairs geometric IL_1D4R_001	NA IL_85877.10*
36	IL_4V6S_036	1/AB/998:1002, 1/AB/1153:1157	UAA/GAN geometric IL_5J7L_277	NA IL_53523.5*
37	IL_4V6S_037	1/AB/1002:1011, 1/AB/1150:1153	NA	NA
38	IL_4V6S_038	1/AB/1011:1013, 1/AB/1149:1150	Single bulged U geometric IL_4WF9_038	NA IL_83039.11*
39	IL_4V6S_039	1/AB/1018:1024, 1/AB/1140:1144	geometric IL_4WF9_039	NA IL_57188.3*
40	IL_4V6S_040	1/AB/1024:1030, 1/AB/1124:1140	geometric IL_5J7L_281	NA IL_22615.1*
41	IL_4V6S_041	1/AB/1031:1034, 1/AB/1121:1123	Isolated non-canonical cWW with bulges homologous IL_7RQB_041	NA IL_55456.1*
42	IL_4V6S_042	1/AB/1038:1041, 1/AB/1114:1117	Tandem non-canonical cWW pairs geometric IL_5LQO_002	NA IL_85877.10*
43	IL_4V6S_043	1/AB/1043:1051, 1/AB/1108:1112	NA	NA
44	IL_4V6S_044	1/AB/1059:1062, 1/AB/1076:1079	NA	NA
45	IL_4V6S_045	1/AB/1087:1090, 1/AB/1101:1102	Major groove platform geometric IL_7A0S_085	NA IL_80663.10*
46	IL_4V6S_046	1/AB/1196:1199, 1/AB/1246:1250	Tandem non-canonical cWW pairs geometric IL_3WBM_002	NA IL_85877.10*
47	IL_4V6S_047	1/AB/1202:1207, 1/AB/1239:1243	NA	NA
48	IL_4V6S_048	1/AB/1208:1215, 1/AB/1234:1238	Kink-turn homologous IL_7RQB_047	NA IL_29549.9*
49	IL_4V6S_049	1/AB/1262:1269, 1/AB/2011:2017	NA	NA
50	IL_4V6S_050	1/AB/1310:1313, 1/AB/1603:1604	Major groove platform; stack outside cWW homologous IL_7RQB_050	NA IL_70995.6*
51	IL_4V6S_051	1/AB/1319:1324, 1/AB/1330:1333	NA	NA
52	IL_4V6S_052	1/AB/1357:1361, 1/AB/1370:1374	tSH-tHW-tHS homologous IL_7RQB_053	NA IL_39521.5*
53	IL_4V6S_053	1/AB/1414:1416, 1/AB/1582:1588	NA	NA
54	IL_4V6S_054	1/AB/1417:1421, 1/AB/1577:1581	UAA/GAN homologous IL_7RQB_055	NA IL_53523.5*
55	IL_4V6S_055	1/AB/1432:1435, 1/AB/1557:1561	Non canonical cWW and near pair geometric IL_6CF2_001	NA IL_85877.10*
56	IL_4V6S_056	1/AB/1437:1440, 1/AB/1551:1555	NA	NA
57	IL_4V6S_057	1/AB/1468:1471, 1/AB/1520:1524	geometric IL_5J7L_299	NA IL_68574.2*
58	IL_4V6S_058	1/AB/1474:1478, 1/AB/1513:1517	tSH-tHW-tHS geometric IL_5J7L_300	NA IL_39521.5*
59	IL_4V6S_059	1/AB/1480:1482, 1/AB/1507:1511	NA	NA
60	IL_4V6S_060	1/AB/1489:1491, 1/AB/1499:1500	NA	NA
61	IL_4V6S_061	1/AB/1526:1529, 1/AB/1542:1546	UAA/GAN variation geometric IL_5J7L_303	NA IL_81389.2*
62	IL_4V6S_062	1/AB/1651:1656, 1/AB/2004:2006	homologous IL_7RQB_064	NA IL_12566.2*
63	IL_4V6S_063	1/AB/1663:1665, 1/AB/1995:1997	Isolated tWW turn homologous IL_7RQB_065	NA IL_54997.5*
64	IL_4V6S_064	1/AB/1666:1669, 1/AB/1993:1994	Major groove platform; stack outside cWW homologous IL_7RQB_066	NA IL_80663.10*
65	IL_4V6S_065	1/AB/1669:1674, 1/AB/1990:1993	Intercalated tWH geometric IL_7RQB_067	NA IL_01312.13*
66	IL_4V6S_066	1/AB/1686:1691, 1/AB/1696:1702	tSH-tSH-tHH-tHS homologous IL_7RQB_068	NA IL_66584.5*
67	IL_4V6S_067	1/AB/1712:1718, 1/AB/1742:1746	6x5 Sarcin-Ricin; G-bulge geometric IL_5J7L_309	NA IL_88269.2*
68	IL_4V6S_068	1/AB/1720:1726, 1/AB/1734:1740	NA	NA
69	IL_4V6S_069	1/AB/1727:1728, 1/AB/1731:1733	Single bulged C geometric IL_7A0S_055	NA IL_61258.10*
70	IL_4V6S_070	1/AB/1770:1771, 1/AB/1980:1982	Single bulged A homologous IL_7RQB_069	NA IL_80007.16*
71	IL_4V6S_071	1/AB/1798:1804, 1/AB/1813:1821	Kink-turn related homologous IL_7RQB_070	NA IL_17069.3*
72	IL_4V6S_072	1/AB/1837:1840, 1/AB/1902:1903	NA	NA
73	IL_4V6S_073	1/AB/1841:1842, 1/AB/1898:1901	Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_072	NA IL_13730.12*
74	IL_4V6S_074	1/AB/1861:1863, 1/AB/1879:1881	geometric IL_3ICQ_003	NA IL_01312.13*
75	IL_4V6S_075	1/AB/1864:1867, 1/AB/1874:1878	UAA/GAN related geometric IL_2R8S_002	NA IL_81389.2*
76	IL_4V6S_076	1/AB/1933:1934, 1/AB/1964:1967	Multiple bulged bases geometric IL_6IV9_001	NA IL_13730.12*
77	IL_4V6S_077	1/AB/1934:1945, 1/AB/1961:1964	NA	NA
78	IL_4V6S_078	1/AB/2050:2052, 1/AB/2617:2618	Major groove platform geometric IL_5J7L_028	NA IL_80663.10*
79	IL_4V6S_079	1/AB/2052:2056, 1/AB/2612:2617	NA	NA
80	IL_4V6S_080	1/AB/2064:2066, 1/AB/2444:2446	geometric IL_3LA5_001	NA IL_01312.13*
81	IL_4V6S_081	1/AB/2067:2071, 1/AB/2438:2443	NA	NA
82	IL_4V6S_082	1/AB/2081:2083, 1/AB/2236:2239	Isolated tHS basepair with bulges homologous IL_7RQB_082	NA IL_38958.6*
83	IL_4V6S_083	1/AB/2084:2087, 1/AB/2232:2235	Tandem non-canonical cWW pairs geometric IL_5TBW_041	NA IL_85877.10*
84	IL_4V6S_084	1/AB/2103:2105, 1/AB/2184:2186	geometric IL_1Y27_001	NA IL_01312.13*
85	IL_4V6S_085	1/AB/2106:2110, 1/AB/2179:2183	NA	NA
86	IL_4V6S_086	1/AB/2110:2120, 1/AB/2177:2179	NA	NA
87	IL_4V6S_087	1/AB/2120:2123, 1/AB/2175:2177	Other IL geometric IL_5TBW_064	NA IL_87630.5*
88	IL_4V6S_088	1/AB/2202:2204, 1/AB/2220:2221	NA	NA
89	IL_4V6S_089	1/AB/2350:2353, 1/AB/2364:2367	Double sheared homologous IL_7RQB_089	NA IL_09705.7*
90	IL_4V6S_090	1/AB/2401:2403, 1/AB/2414:2415	NA	NA
91	IL_4V6S_091	1/AB/2456:2461, 1/AB/2489:2495	NA	NA
92	IL_4V6S_092	1/AB/2466:2470, 1/AB/2480:2484	Triple sheared homologous IL_7RQB_095	NA IL_56467.6*
93	IL_4V6S_093	1/AB/2506:2509, 1/AB/2579:2583	NA	NA
94	IL_4V6S_094	1/AB/2510:2512, 1/AB/2574:2578	Isolated non-canonical cWW with bulges geometric IL_7RQB_097	NA IL_01312.13*
95	IL_4V6S_095	1/AB/2512:2513, 1/AB/2571:2574	Multiple bulged bases homologous IL_7RQB_098	NA IL_13730.12*
96	IL_4V6S_096	1/AB/2588:2590, 1/AB/2604:2606	homologous IL_7RQB_100	NA
97	IL_4V6S_097	1/AB/2591:2593, 1/AB/2600:2603	geometric IL_4V8Q_188	NA IL_01312.13*
98	IL_4V6S_098	1/AB/2636:2640, 1/AB/2774:2782	tSH-tHS-tHW homologous IL_7RQB_102	NA IL_34907.2*
99	IL_4V6S_099	1/AB/2652:2658, 1/AB/2663:2668	NA	NA
100	IL_4V6S_100	1/AB/2680:2684, 1/AB/2725:2727	C-loop homologous IL_7RQB_104	NA IL_63596.4*
101	IL_4V6S_101	1/AB/2687:2691, 1/AB/2718:2722	homologous IL_7RQB_105	NA IL_08296.3*
102	IL_4V6S_102	1/AB/2695:2696, 1/AB/2711:2714	Multiple bulged bases homologous IL_7RQB_106	NA IL_77034.1*
103	IL_4V6S_103	1/AB/2737:2742, 1/AB/2762:2767	UAA/GAN with extra cWW homologous IL_7RQB_107	NA IL_49767.4*
104	IL_4V6S_104	1/AB/2806:2811, 1/AB/2889:2892	NA	NA
105	IL_4V6S_105	1/AB/2838:2839, 1/AB/2878:2880	Single bulged C homologous IL_7RQB_108	NA IL_61258.10*
106	IL_4V6S_106	1/AB/2843:2846, 1/AB/2870:2874	homologous IL_7RQB_109	NA IL_58764.1*
107	IL_4V6S_107	1/AB/2847:2852, 1/AB/2865:2869	homologous IL_7RQB_110	NA IL_83162.3*
108	IL_4V6S_108	1/BA/28:33, 1/BA/551:555	NA	NA
109	IL_4V6S_109	1/BA/43:45, 1/BA/396:399	NA	NA
110	IL_4V6S_110	1/BA/47:52, 1/BA/359:361	NA	NA
111	IL_4V6S_111	1/BA/54:56, 1/BA/356:357	NA	NA
112	IL_4V6S_112	1/BA/63:66, 1/BA/103:104	NA	NA
113	IL_4V6S_113	1/BA/67:69, 1/BA/99:102	NA	NA
114	IL_4V6S_115	1/BA/75:77, 1/BA/92:95	NA	NA
115	IL_4V6S_116	1/BA/128:131, 1/BA/231:233	NA	NA
116	IL_4V6S_117	1/BA/132:136, 1/BA/227:230	NA	NA
117	IL_4V6S_118	1/BA/144:146, 1/BA/176:178	NA	NA
118	IL_4V6S_119	1/BA/147:153, 1/BA/168:175	NA	NA
119	IL_4V6S_121	1/BA/242:247, 1/BA/277:284	NA	NA
120	IL_4V6S_122	1/BA/248:254, 1/BA/272:276	NA	NA
121	IL_4V6S_123	1/BA/292:293, 1/BA/304:308	NA	NA
122	IL_4V6S_124	1/BA/367:369, 1/BA/392:393	NA	NA
123	IL_4V6S_125	1/BA/371:376, 1/BA/387:390	NA	NA
124	IL_4V6S_126	1/BA/408:416, 1/BA/427:434	NA	NA
125	IL_4V6S_128	1/BA/446:450, 1/BA/483:488	NA	NA
126	IL_4V6S_129	1/BA/450:455, 1/BA/477:483	NA	NA
127	IL_4V6S_130	1/BA/456:460, 1/BA/471:476	NA	NA
128	IL_4V6S_131	1/BA/460:462, 1/BA/470:471	NA	NA
129	IL_4V6S_132	1/BA/504:511, 1/BA/540:541	NA	NA
130	IL_4V6S_133	1/BA/515:521, 1/BA/528:536	NA	NA
131	IL_4V6S_134	1/BA/569:575, 1/BA/880:881	NA	NA
132	IL_4V6S_135	1/BA/580:584, 1/BA/757:761	NA	NA
133	IL_4V6S_136	1/BA/594:596, 1/BA/644:645	NA	NA
134	IL_4V6S_137	1/BA/597:598, 1/BA/640:643	NA	NA
135	IL_4V6S_138	1/BA/604:612, 1/BA/628:634	NA	NA
136	IL_4V6S_139	1/BA/654:655, 1/BA/751:754	NA	NA
137	IL_4V6S_140	1/BA/659:660, 1/BA/745:747	NA	NA
138	IL_4V6S_141	1/BA/662:666, 1/BA/740:743	NA	NA
139	IL_4V6S_142	1/BA/673:678, 1/BA/712:717	NA	NA
140	IL_4V6S_143	1/BA/684:688, 1/BA/699:706	NA	NA
141	IL_4V6S_145	1/BA/774:778, 1/BA/804:805	NA	NA
142	IL_4V6S_146	1/BA/779:783, 1/BA/799:803	NA	NA
143	IL_4V6S_147	1/BA/887:894, 1/BA/905:910	NA	NA
144	IL_4V6S_148	1/BA/922:924, 1/BA/1392:1395	NA	NA
145	IL_4V6S_149	1/BA/925:927, 1/BA/1390:1391	NA	NA
146	IL_4V6S_150	1/BA/933:935, 1/BA/1380:1384	NA	NA
147	IL_4V6S_151	1/BA/953:955, 1/BA/1225:1228	NA	NA
148	IL_4V6S_152	1/BA/993:997, 1/BA/1044:1045	NA	NA
149	IL_4V6S_153	1/BA/998:999, 1/BA/1041:1043	NA	NA
150	IL_4V6S_154	1/BA/1048:1056, 1/BA/1204:1209	NA	NA
151	IL_4V6S_155	1/BA/1057:1058, 1/BA/1199:1203	NA	NA
152	IL_4V6S_156	1/BA/1060:1061, 1/BA/1195:1197	NA	NA
153	IL_4V6S_157	1/BA/1061:1063, 1/BA/1193:1195	NA	NA
154	IL_4V6S_158	1/BA/1124:1128, 1/BA/1144:1149	NA	NA
155	IL_4V6S_159	1/BA/1129:1132, 1/BA/1142:1143	NA	NA
156	IL_4V6S_160	1/BA/1158:1161, 1/BA/1175:1181	NA	NA
157	IL_4V6S_161	1/BA/1247:1253, 1/BA/1284:1290	NA	NA
158	IL_4V6S_162	1/BA/1255:1258, 1/BA/1277:1282	NA	NA
159	IL_4V6S_163	1/BA/1259:1263, 1/BA/1272:1276	NA	NA
160	IL_4V6S_164	1/BA/1303:1308, 1/BA/1329:1334	NA	NA
161	IL_4V6S_165	1/BA/1399:1401, 1/BA/1501:1504	NA	NA
162	IL_4V6S_166	1/BA/1401:1404, 1/BA/1497:1501	NA	NA
163	IL_4V6S_167	1/BA/1405:1409, 1/BA/1491:1496	NA	NA
164	IL_4V6S_168	1/BA/1412:1416, 1/BA/1484:1488	NA	NA
165	IL_4V6S_169	1/BA/1416:1420, 1/BA/1480:1484	NA	NA
166	IL_4V6S_170	1/BA/1430:1435, 1/BA/1466:1470	NA	NA
167	IL_4V6S_171	1/BA/1438:1443, 1/BA/1459:1463	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_4V6S_114	missing nts	NA
2	IL_4V6S_120	missing nts	NA
3	IL_4V6S_127	missing nts	NA
4	IL_4V6S_144	complementary	NA
5	IL_4V6S_172	missing nts	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	J3_4V6S_001	1/AA/10:16, 1/AA/68:70, 1/AA/106:110	NA	NA
2	J3_4V6S_002	1/AB/30:31, 1/AB/474:481, 1/AB/509:510	NA	NA
3	J3_4V6S_003	1/AB/55:58, 1/AB/69:76, 1/AB/110:115	NA	NA
4	J3_4V6S_004	1/AB/683:689, 1/AB/773:775, 1/AB/791:794	homologous J3_7RQB_004	NA
5	J3_4V6S_005	1/AB/698:700, 1/AB/732:736, 1/AB/760:763	homologous J3_7RQB_005	NA
6	J3_4V6S_006	1/AB/1055:1059, 1/AB/1079:1087, 1/AB/1102:1104	NA	NA
7	J3_4V6S_007	1/AB/1298:1303, 1/AB/1625:1627, 1/AB/1639:1642	homologous J3_7RQB_007	NA
8	J3_4V6S_008	1/AB/1306:1309, 1/AB/1605:1611, 1/AB/1620:1622	homologous J3_7RQB_008	NA
9	J3_4V6S_009	1/AB/2091:2093, 1/AB/2196:2200, 1/AB/2223:2228	homologous J3_7RQB_010	NA
10	J3_4V6S_010	1/AB/2295:2299, 1/AB/2317:2323, 1/AB/2332:2337	NA	NA
11	J3_4V6S_011	1/AB/2789:2791, 1/AB/2805:2806, 1/AB/2892:2894	NA	NA
12	J3_4V6S_012	1/AB/2812:2815, 1/AB/2831:2836, 1/AB/2882:2888	NA	NA
13	J3_4V6S_013	1/BA/45:47, 1/BA/361:367, 1/BA/393:396	NA	NA
14	J3_4V6S_014	1/BA/586:588, 1/BA/651:654, 1/BA/754:755	NA	NA
15	J3_4V6S_015	1/BA/672:673, 1/BA/717:725, 1/BA/732:734	NA	NA
16	J3_4V6S_016	1/BA/826:829, 1/BA/857:861, 1/BA/868:874	NA	NA
17	J3_4V6S_017	1/BA/941:946, 1/BA/1235:1237, 1/BA/1337:1342	NA	NA
18	J3_4V6S_018	1/BA/955:962, 1/BA/973:985, 1/BA/1220:1225	NA	NA
19	J3_4V6S_019	1/BA/990:993, 1/BA/1045:1047, 1/BA/1210:1215	NA	NA
20	J3_4V6S_020	1/BA/1003:1006, 1/BA/1023:1027, 1/BA/1034:1037	NA	NA
21	J3_4V6S_021	1/BA/1063:1068, 1/BA/1107:1114, 1/BA/1186:1193	NA	NA
22	J3_4V6S_022	1/BA/1073:1074, 1/BA/1083:1087, 1/BA/1098:1102	NA	NA
23	J3_4V6S_023	1/BA/1116:1119, 1/BA/1154:1158, 1/BA/1181:1184	NA	NA
24	J3_4V6S_024	1/BA/1237:1242, 1/BA/1295:1303, 1/BA/1334:1337	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

4V6S Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops