4V6S Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V6S_001 | 1/AA/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_011 HL_75407.1 | |
| HL_4V6S_002 | 1/AA/85:91 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_75407.1 | |
| HL_4V6S_003 | 1/AB/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_4V6S_004 | 1/AB/86:96 | No text annotation Not in a motif group | ||
| HL_4V6S_005 | 1/AB/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_4V6S_006 | 1/AB/137:142 | No text annotation Not in a motif group | geometric HL_6CK5_001 HL_03562.2 | |
| HL_4V6S_007 | 1/AB/157:169 | No text annotation Not in a motif group | ||
| HL_4V6S_008 | 1/AB/194:201 | No text annotation Not in a motif group | geometric HL_7RQB_006 HL_06192.2 | |
| HL_4V6S_009 | 1/AB/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_4V6S_010 | 1/AB/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_4V6S_011 | 1/AB/305:312 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_4V6S_012 | 1/AB/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_4V6S_013 | 1/AB/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.9 | |
| HL_4V6S_014 | 1/AB/381:393 | No text annotation Not in a motif group | ||
| HL_4V6S_015 | 1/AB/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4V6S_016 | 1/AB/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.2 | |
| HL_4V6S_017 | 1/AB/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.2 | |
| HL_4V6S_018 | 1/AB/543:550 | No text annotation Not in a motif group | ||
| HL_4V6S_019 | 1/AB/564:577 | No text annotation Not in a motif group | ||
| HL_4V6S_020 | 1/AB/611:617 | No text annotation Not in a motif group | ||
| HL_4V6S_021 | 1/AB/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.2 | |
| HL_4V6S_022 | 1/AB/640:648 | No text annotation Not in a motif group | ||
| HL_4V6S_023 | 1/AB/712:719 | No text annotation Not in a motif group | ||
| HL_4V6S_024 | 1/AB/743:754 | No text annotation Not in a motif group | ||
| HL_4V6S_025 | 1/AB/779:785 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_4V6S_026 | 1/AB/826:831 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_64365.1 | |
| HL_4V6S_027 | 1/AB/885:891 | No text annotation Not in a motif group | geometric HL_4V88_194 HL_50142.2 | |
| HL_4V6S_028 | 1/AB/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
| HL_4V6S_029 | 1/AB/978:985 | No text annotation Not in a motif group | ||
| HL_4V6S_030 | 1/AB/1064:1074 | No text annotation Not in a motif group | homologous HL_6PRV_001 HL_07145.1 | |
| HL_4V6S_031 | 1/AB/1092:1099 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_4V6S_032 | 1/AB/1172:1177 | No text annotation Not in a motif group | ||
| HL_4V6S_033 | 1/AB/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_4V6S_034 | 1/AB/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_4V6S_035 | 1/AB/1324:1330 | No text annotation Not in a motif group | geometric HL_7A0S_033 HL_46680.1 | |
| HL_4V6S_036 | 1/AB/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_4V6S_037 | 1/AB/1389:1398 | No text annotation Not in a motif group | homologous HL_7A0S_035 HL_70682.1 | |
| HL_4V6S_038 | 1/AB/1450:1461 | No text annotation Not in a motif group | ||
| HL_4V6S_039 | 1/AB/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_4V6S_040 | 1/AB/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_03562.2 | |
| HL_4V6S_041 | 1/AB/1612:1619 | No text annotation Not in a motif group | ||
| HL_4V6S_042 | 1/AB/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.2 | |
| HL_4V6S_043 | 1/AB/1691:1696 | UNCG Not in a motif group | geometric HL_1KUQ_001 HL_03562.2 | |
| HL_4V6S_044 | 1/AB/1728:1731 | No text annotation Not in a motif group | geometric HL_7RQB_009 HL_89098.1 | |
| HL_4V6S_045 | 1/AB/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_4V6S_046 | 1/AB/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_4V6S_047 | 1/AB/1806:1811 | No text annotation Not in a motif group | homologous HL_4WF9_044 NA | |
| HL_4V6S_048 | 1/AB/1868:1873 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_4V6S_049 | 1/AB/1910:1920 | No text annotation Not in a motif group | homologous HL_5J7L_181 NA | |
| HL_4V6S_050 | 1/AB/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_4V6S_051 | 1/AB/2027:2036 | No text annotation Not in a motif group | ||
| HL_4V6S_052 | 1/AB/2142:2149 | No text annotation Not in a motif group | ||
| HL_4V6S_053 | 1/AB/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_4V6S_054 | 1/AB/2246:2258 | No text annotation Not in a motif group | ||
| HL_4V6S_055 | 1/AB/2264:2276 | No text annotation Not in a motif group | ||
| HL_4V6S_056 | 1/AB/2303:2313 | No text annotation Not in a motif group | ||
| HL_4V6S_057 | 1/AB/2324:2331 | No text annotation Not in a motif group | ||
| HL_4V6S_058 | 1/AB/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_4V6S_059 | 1/AB/2374:2379 | No text annotation Not in a motif group | homologous HL_7A0S_057 HL_42097.2 | |
| HL_4V6S_060 | 1/AB/2404:2413 | No text annotation Not in a motif group | ||
| HL_4V6S_061 | 1/AB/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
| HL_4V6S_062 | 1/AB/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_91104.1 | |
| HL_4V6S_063 | 1/AB/2551:2557 | No text annotation Not in a motif group | homologous HL_7A0S_061 HL_43656.2 | |
| HL_4V6S_064 | 1/AB/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.2 | |
| HL_4V6S_065 | 1/AB/2658:2663 | GNRA Not in a motif group | homologous HL_4WF9_060 HL_42097.2 | |
| HL_4V6S_066 | 1/AB/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_7A0S_064 HL_46680.1 | |
| HL_4V6S_067 | 1/AB/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_4V6S_068 | 1/AB/2796:2800 | No text annotation Not in a motif group | ||
| HL_4V6S_069 | 1/AB/2819:2827 | No text annotation Not in a motif group | homologous HL_7A0S_067 HL_27930.1 | |
| HL_4V6S_070 | 1/AB/2856:2861 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_4V6S_071 | 1/BA/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_4V6S_073 | 1/BA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.2 | |
| HL_4V6S_074 | 1/BA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.2 | |
| HL_4V6S_076 | 1/BA/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_4V6S_077 | 1/BA/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.2 | |
| HL_4V6S_078 | 1/BA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V6S_079 | 1/BA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_4V6S_080 | 1/BA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.2 | |
| HL_4V6S_081 | 1/BA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_4V6S_083 | 1/BA/521:528 | No text annotation Not in a motif group | homologous HL_5J7L_013 NA | |
| HL_4V6S_084 | 1/BA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_4V6S_085 | 1/BA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_4V6S_086 | 1/BA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_4V6S_087 | 1/BA/786:796 | No text annotation Not in a motif group | ||
| HL_4V6S_089 | 1/BA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.2 | |
| HL_4V6S_090 | 1/BA/897:902 | GNRA Not in a motif group | homologous HL_6CZR_091 HL_42097.2 | |
| HL_4V6S_091 | 1/BA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V6S_092 | 1/BA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.2 | |
| HL_4V6S_093 | 1/BA/1028:1033 | UNCG Not in a motif group | geometric HL_1I6U_001 HL_03562.2 | |
| HL_4V6S_094 | 1/BA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.2 | |
| HL_4V6S_095 | 1/BA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4V6S_096 | 1/BA/1134:1140 | No text annotation Not in a motif group | homologous HL_5J7L_025 HL_03562.2 | |
| HL_4V6S_098 | 1/BA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.2 | |
| HL_4V6S_099 | 1/BA/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_4V6S_100 | 1/BA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_4V6S_101 | 1/BA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_4V6S_102 | 1/BA/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_4V6S_103 | 1/BC/13:23 | No text annotation Not in a motif group | homologous HL_4YYE_001 NA | |
| HL_4V6S_104 | 1/BC/31:41 | No text annotation Not in a motif group | homologous HL_2BTE_002 NA | |
| HL_4V6S_105 | 1/BC/54:62 | No text annotation Not in a motif group | homologous HL_1B23_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6S_072 | No text annotation | ||
| HL_4V6S_075 | No text annotation | ||
| HL_4V6S_082 | No text annotation | ||
| HL_4V6S_088 | No text annotation | ||
| HL_4V6S_097 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V6S_001 | 1/AA/17:18, 1/AA/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.3 | |
| IL_4V6S_002 | 1/AA/23:28, 1/AA/56:60 | No text annotation Not in a motif group | homologous IL_7A0S_103 IL_18472.2 | |
| IL_4V6S_003 | 1/AA/30:31, 1/AA/51:54 | Minor groove platform Not in a motif group | geometric IL_3MXH_005 IL_15052.1 | |
| IL_4V6S_004 | 1/AA/34:38, 1/AA/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_4V6S_005 | 1/AA/71:79, 1/AA/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_4V6S_006 | 1/AB/24:30, 1/AB/510:516 | No text annotation Not in a motif group | ||
| IL_4V6S_007 | 1/AB/36:37, 1/AB/442:444 | Single bulged A Not in a motif group | homologous IL_4WF9_002 IL_37497.3 | |
| IL_4V6S_008 | 1/AB/43:44, 1/AB/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_4V6S_009 | 1/AB/80:85, 1/AB/97:106 | No text annotation Not in a motif group | ||
| IL_4V6S_010 | 1/AB/183:184, 1/AB/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_4V6S_011 | 1/AB/188:194, 1/AB/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_250 IL_04346.7 | |
| IL_4V6S_012 | 1/AB/239:245, 1/AB/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_4V6S_013 | 1/AB/269:271, 1/AB/366:370 | No text annotation Not in a motif group | ||
| IL_4V6S_014 | 1/AB/274:281, 1/AB/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4V6S_015 | 1/AB/293:295, 1/AB/343:347 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.1 | |
| IL_4V6S_016 | 1/AB/481:484, 1/AB/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_4V6S_017 | 1/AB/536:539, 1/AB/554:557 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_4V6S_018 | 1/AB/606:610, 1/AB/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_4V6S_019 | 1/AB/672:674, 1/AB/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_4V6S_020 | 1/AB/674:678, 1/AB/799:806 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.6 | |
| IL_4V6S_021 | 1/AB/697:698, 1/AB/763:765 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.3 | |
| IL_4V6S_022 | 1/AB/702:707, 1/AB/724:730 | No text annotation Not in a motif group | geometric IL_4V88_421 IL_86929.2 | |
| IL_4V6S_023 | 1/AB/738:740, 1/AB/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.2 | |
| IL_4V6S_024 | 1/AB/775:777, 1/AB/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_4V6S_025 | 1/AB/843:845, 1/AB/934:935 | Single base bend Not in a motif group | geometric IL_5IBB_340 IL_92001.1 | |
| IL_4V6S_026 | 1/AB/845:848, 1/AB/930:934 | No text annotation Not in a motif group | ||
| IL_4V6S_027 | 1/AB/849:851, 1/AB/926:929 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_4V6S_028 | 1/AB/856:862, 1/AB/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_4V6S_029 | 1/AB/862:863, 1/AB/913:915 | Minor groove platform Not in a motif group | geometric IL_4V9F_034 IL_42622.2 | |
| IL_4V6S_030 | 1/AB/864:868, 1/AB/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_4V6S_031 | 1/AB/870:872, 1/AB/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_4V6S_032 | 1/AB/875:880, 1/AB/897:902 | No text annotation Not in a motif group | ||
| IL_4V6S_033 | 1/AB/880:881, 1/AB/895:897 | No text annotation Not in a motif group | ||
| IL_4V6S_034 | 1/AB/881:884, 1/AB/892:895 | No text annotation Not in a motif group | ||
| IL_4V6S_035 | 1/AB/992:996, 1/AB/1159:1162 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.3 | |
| IL_4V6S_036 | 1/AB/998:1002, 1/AB/1153:1157 | UAA/GAN Not in a motif group | geometric IL_5J7L_277 IL_89002.2 | |
| IL_4V6S_037 | 1/AB/1002:1011, 1/AB/1150:1153 | No text annotation Not in a motif group | ||
| IL_4V6S_038 | 1/AB/1011:1013, 1/AB/1149:1150 | Single bulged U Not in a motif group | geometric IL_4WF9_038 IL_83039.14 | |
| IL_4V6S_039 | 1/AB/1018:1024, 1/AB/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_4V6S_040 | 1/AB/1024:1030, 1/AB/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_4V6S_041 | 1/AB/1031:1034, 1/AB/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_041 IL_82068.2 | |
| IL_4V6S_042 | 1/AB/1038:1041, 1/AB/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.3 | |
| IL_4V6S_043 | 1/AB/1043:1051, 1/AB/1108:1112 | No text annotation Not in a motif group | ||
| IL_4V6S_044 | 1/AB/1059:1062, 1/AB/1076:1079 | No text annotation Not in a motif group | ||
| IL_4V6S_045 | 1/AB/1087:1090, 1/AB/1101:1102 | Major groove platform Not in a motif group | geometric IL_7A0S_085 IL_27635.2 | |
| IL_4V6S_046 | 1/AB/1196:1199, 1/AB/1246:1250 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.3 | |
| IL_4V6S_047 | 1/AB/1202:1207, 1/AB/1239:1243 | No text annotation Not in a motif group | ||
| IL_4V6S_048 | 1/AB/1208:1215, 1/AB/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_4V6S_049 | 1/AB/1262:1269, 1/AB/2011:2017 | No text annotation Not in a motif group | ||
| IL_4V6S_050 | 1/AB/1310:1313, 1/AB/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_290 IL_50694.2 | |
| IL_4V6S_051 | 1/AB/1319:1324, 1/AB/1330:1333 | No text annotation Not in a motif group | ||
| IL_4V6S_052 | 1/AB/1357:1361, 1/AB/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_4V6S_053 | 1/AB/1414:1416, 1/AB/1582:1588 | No text annotation Not in a motif group | ||
| IL_4V6S_054 | 1/AB/1417:1421, 1/AB/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_4V6S_055 | 1/AB/1432:1435, 1/AB/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_4V6S_056 | 1/AB/1437:1440, 1/AB/1551:1555 | No text annotation Not in a motif group | ||
| IL_4V6S_057 | 1/AB/1468:1471, 1/AB/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_4V6S_058 | 1/AB/1474:1478, 1/AB/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_4V6S_059 | 1/AB/1480:1482, 1/AB/1507:1511 | No text annotation Not in a motif group | ||
| IL_4V6S_060 | 1/AB/1489:1491, 1/AB/1499:1500 | No text annotation Not in a motif group | ||
| IL_4V6S_061 | 1/AB/1526:1529, 1/AB/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_4V6S_062 | 1/AB/1651:1656, 1/AB/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4V6S_063 | 1/AB/1663:1665, 1/AB/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_4V6S_064 | 1/AB/1666:1669, 1/AB/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_4V6S_065 | 1/AB/1669:1674, 1/AB/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_4V6S_066 | 1/AB/1686:1691, 1/AB/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7A0S_063 IL_65969.2 | |
| IL_4V6S_067 | 1/AB/1712:1718, 1/AB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_4V6S_068 | 1/AB/1720:1726, 1/AB/1734:1740 | No text annotation Not in a motif group | ||
| IL_4V6S_069 | 1/AB/1727:1728, 1/AB/1731:1733 | Single bulged C Not in a motif group | homologous IL_5J7L_311 IL_61258.12 | |
| IL_4V6S_070 | 1/AB/1770:1771, 1/AB/1980:1982 | Single bulged A Not in a motif group | homologous IL_7A0S_064 IL_37497.3 | |
| IL_4V6S_071 | 1/AB/1798:1804, 1/AB/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_4V6S_072 | 1/AB/1837:1840, 1/AB/1902:1903 | No text annotation Not in a motif group | homologous IL_4WF9_070 NA | |
| IL_4V6S_073 | 1/AB/1841:1842, 1/AB/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4WF9_071 IL_69996.1 | |
| IL_4V6S_074 | 1/AB/1861:1863, 1/AB/1879:1881 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_51629.2 | |
| IL_4V6S_075 | 1/AB/1864:1867, 1/AB/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_4V6S_076 | 1/AB/1933:1934, 1/AB/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_6IV9_001 IL_16396.2 | |
| IL_4V6S_077 | 1/AB/1934:1945, 1/AB/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_4V6S_078 | 1/AB/2050:2052, 1/AB/2617:2618 | Major groove platform Not in a motif group | geometric IL_5J7L_028 IL_27635.2 | |
| IL_4V6S_079 | 1/AB/2052:2056, 1/AB/2612:2617 | No text annotation Not in a motif group | ||
| IL_4V6S_080 | 1/AB/2064:2066, 1/AB/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_4V6S_081 | 1/AB/2067:2071, 1/AB/2438:2443 | No text annotation Not in a motif group | ||
| IL_4V6S_082 | 1/AB/2081:2083, 1/AB/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_4V6S_083 | 1/AB/2084:2087, 1/AB/2232:2235 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.3 | |
| IL_4V6S_084 | 1/AB/2103:2105, 1/AB/2184:2186 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_4V6S_085 | 1/AB/2106:2110, 1/AB/2179:2183 | No text annotation Not in a motif group | ||
| IL_4V6S_086 | 1/AB/2110:2120, 1/AB/2177:2179 | No text annotation Not in a motif group | ||
| IL_4V6S_087 | 1/AB/2120:2123, 1/AB/2175:2177 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_84698.1 | |
| IL_4V6S_088 | 1/AB/2202:2204, 1/AB/2220:2221 | No text annotation Not in a motif group | ||
| IL_4V6S_089 | 1/AB/2350:2353, 1/AB/2364:2367 | Double sheared Not in a motif group | homologous IL_4WF9_087 IL_09705.9 | |
| IL_4V6S_090 | 1/AB/2401:2403, 1/AB/2414:2415 | No text annotation Not in a motif group | ||
| IL_4V6S_091 | 1/AB/2456:2461, 1/AB/2489:2495 | No text annotation Not in a motif group | ||
| IL_4V6S_092 | 1/AB/2466:2470, 1/AB/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_4V6S_093 | 1/AB/2506:2509, 1/AB/2579:2583 | No text annotation Not in a motif group | ||
| IL_4V6S_094 | 1/AB/2510:2512, 1/AB/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_4V6S_095 | 1/AB/2512:2513, 1/AB/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_4V6S_096 | 1/AB/2588:2590, 1/AB/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_4V6S_097 | 1/AB/2591:2593, 1/AB/2600:2603 | No text annotation Not in a motif group | homologous IL_7A0S_092 IL_82842.2 | |
| IL_4V6S_098 | 1/AB/2636:2640, 1/AB/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_4V6S_099 | 1/AB/2652:2658, 1/AB/2663:2668 | No text annotation Not in a motif group | ||
| IL_4V6S_100 | 1/AB/2680:2684, 1/AB/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_4V6S_101 | 1/AB/2687:2691, 1/AB/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_4V6S_102 | 1/AB/2695:2696, 1/AB/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_4V6S_103 | 1/AB/2737:2742, 1/AB/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_4V6S_104 | 1/AB/2806:2811, 1/AB/2889:2892 | No text annotation Not in a motif group | ||
| IL_4V6S_105 | 1/AB/2838:2839, 1/AB/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_4V6S_106 | 1/AB/2843:2846, 1/AB/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_4V6S_107 | 1/AB/2847:2852, 1/AB/2865:2869 | No text annotation Not in a motif group | homologous IL_7A0S_101 IL_83162.5 | |
| IL_4V6S_108 | 1/BA/28:33, 1/BA/551:555 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_4V6S_109 | 1/BA/43:45, 1/BA/396:399 | No text annotation Not in a motif group | geometric IL_4KYY_002 IL_51629.2 | |
| IL_4V6S_110 | 1/BA/47:52, 1/BA/359:361 | No text annotation Not in a motif group | ||
| IL_4V6S_111 | 1/BA/54:56, 1/BA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_4V6S_112 | 1/BA/63:66, 1/BA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_4V6S_113 | 1/BA/67:69, 1/BA/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_4V6S_115 | 1/BA/75:77, 1/BA/92:95 | Single bulged G, near cWW Not in a motif group | homologous IL_5J7L_008 IL_82068.2 | |
| IL_4V6S_116 | 1/BA/128:131, 1/BA/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_82068.2 | |
| IL_4V6S_117 | 1/BA/132:136, 1/BA/227:230 | No text annotation Not in a motif group | ||
| IL_4V6S_118 | 1/BA/144:146, 1/BA/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_4V6S_119 | 1/BA/147:153, 1/BA/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_4V6S_121 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_4V6S_122 | 1/BA/248:254, 1/BA/272:276 | No text annotation Not in a motif group | ||
| IL_4V6S_123 | 1/BA/292:293, 1/BA/304:308 | No text annotation Not in a motif group | ||
| IL_4V6S_124 | 1/BA/367:369, 1/BA/392:393 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.14 | |
| IL_4V6S_125 | 1/BA/371:376, 1/BA/387:390 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
| IL_4V6S_126 | 1/BA/408:416, 1/BA/427:434 | No text annotation Not in a motif group | ||
| IL_4V6S_128 | 1/BA/446:450, 1/BA/483:488 | No text annotation Not in a motif group | ||
| IL_4V6S_129 | 1/BA/450:455, 1/BA/477:483 | No text annotation Not in a motif group | ||
| IL_4V6S_130 | 1/BA/456:460, 1/BA/471:476 | No text annotation Not in a motif group | ||
| IL_4V6S_131 | 1/BA/460:462, 1/BA/470:471 | Single stack bend Not in a motif group | geometric IL_7KGA_006 IL_76488.2 | |
| IL_4V6S_132 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_4V6S_133 | 1/BA/515:521, 1/BA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4V6S_134 | 1/BA/569:575, 1/BA/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
| IL_4V6S_135 | 1/BA/580:584, 1/BA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_4V6S_136 | 1/BA/594:596, 1/BA/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.2 | |
| IL_4V6S_137 | 1/BA/597:598, 1/BA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_4V6S_138 | 1/BA/604:612, 1/BA/628:634 | No text annotation Not in a motif group | ||
| IL_4V6S_139 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_4V6S_140 | 1/BA/659:660, 1/BA/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_4V6S_141 | 1/BA/662:666, 1/BA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_4V6S_142 | 1/BA/673:678, 1/BA/712:717 | No text annotation Not in a motif group | ||
| IL_4V6S_143 | 1/BA/684:688, 1/BA/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_4V6S_145 | 1/BA/774:778, 1/BA/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_4V6S_146 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_4V6S_147 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4V6S_148 | 1/BA/922:924, 1/BA/1392:1395 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 | |
| IL_4V6S_149 | 1/BA/925:927, 1/BA/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.3 | |
| IL_4V6S_150 | 1/BA/933:935, 1/BA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_4V6S_151 | 1/BA/953:955, 1/BA/1225:1228 | No text annotation Not in a motif group | geometric IL_7A0S_092 IL_82842.2 | |
| IL_4V6S_152 | 1/BA/993:997, 1/BA/1044:1045 | Minor groove platform Not in a motif group | homologous IL_5J7L_043 IL_47078.1 | |
| IL_4V6S_153 | 1/BA/998:999, 1/BA/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
| IL_4V6S_154 | 1/BA/1048:1056, 1/BA/1204:1209 | No text annotation Not in a motif group | ||
| IL_4V6S_155 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_4V6S_156 | 1/BA/1060:1061, 1/BA/1195:1197 | Single bulged A Not in a motif group | homologous IL_5J7L_049 IL_37497.3 | |
| IL_4V6S_157 | 1/BA/1061:1063, 1/BA/1193:1195 | No text annotation Not in a motif group | geometric IL_6CZR_171 IL_95997.1 | |
| IL_4V6S_158 | 1/BA/1124:1128, 1/BA/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_4V6S_159 | 1/BA/1129:1132, 1/BA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_4V6S_160 | 1/BA/1158:1161, 1/BA/1175:1181 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
| IL_4V6S_161 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_4V6S_162 | 1/BA/1255:1258, 1/BA/1277:1282 | No text annotation Not in a motif group | ||
| IL_4V6S_163 | 1/BA/1259:1263, 1/BA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_4V6S_164 | 1/BA/1303:1308, 1/BA/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_4V6S_165 | 1/BA/1399:1401, 1/BA/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_4V6S_166 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation Not in a motif group | homologous IL_5J7L_059 NA | |
| IL_4V6S_167 | 1/BA/1405:1409, 1/BA/1491:1496 | No text annotation Not in a motif group | homologous IL_5J7L_060 NA | |
| IL_4V6S_168 | 1/BA/1412:1416, 1/BA/1484:1488 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_4V6S_169 | 1/BA/1416:1420, 1/BA/1480:1484 | No text annotation Not in a motif group | ||
| IL_4V6S_170 | 1/BA/1430:1435, 1/BA/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_4V6S_171 | 1/BA/1438:1443, 1/BA/1459:1463 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6S_114 | Minor groove platform | ||
| IL_4V6S_120 | No text annotation | ||
| IL_4V6S_127 | No text annotation | ||
| IL_4V6S_144 | No text annotation | ||
| IL_4V6S_172 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V6S_001 | 1/AA/10:16, 1/AA/68:70, 1/AA/106:110 | No text annotation Not in a motif group | homologous J3_7A0S_014 NA | |
| J3_4V6S_002 | 1/AB/30:31, 1/AB/474:481, 1/AB/509:510 | No text annotation Not in a motif group | ||
| J3_4V6S_003 | 1/AB/55:58, 1/AB/69:76, 1/AB/110:115 | No text annotation Not in a motif group | ||
| J3_4V6S_004 | 1/AB/683:689, 1/AB/773:775, 1/AB/791:794 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_4V6S_005 | 1/AB/698:700, 1/AB/732:736, 1/AB/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_4V6S_006 | 1/AB/1055:1059, 1/AB/1079:1087, 1/AB/1102:1104 | No text annotation Not in a motif group | ||
| J3_4V6S_007 | 1/AB/1298:1303, 1/AB/1625:1627, 1/AB/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_4V6S_008 | 1/AB/1306:1309, 1/AB/1605:1611, 1/AB/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_4V6S_009 | 1/AB/2091:2093, 1/AB/2196:2200, 1/AB/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_4V6S_010 | 1/AB/2295:2299, 1/AB/2317:2323, 1/AB/2332:2337 | No text annotation Not in a motif group | ||
| J3_4V6S_011 | 1/AB/2789:2791, 1/AB/2805:2806, 1/AB/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_4V6S_012 | 1/AB/2812:2815, 1/AB/2831:2836, 1/AB/2882:2888 | No text annotation Not in a motif group | ||
| J3_4V6S_013 | 1/BA/45:47, 1/BA/361:367, 1/BA/393:396 | No text annotation Not in a motif group | ||
| J3_4V6S_014 | 1/BA/586:588, 1/BA/651:654, 1/BA/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_4V6S_015 | 1/BA/672:673, 1/BA/717:725, 1/BA/732:734 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
| J3_4V6S_016 | 1/BA/826:829, 1/BA/857:861, 1/BA/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_4V6S_017 | 1/BA/941:946, 1/BA/1235:1237, 1/BA/1337:1342 | No text annotation Not in a motif group | ||
| J3_4V6S_018 | 1/BA/955:962, 1/BA/973:985, 1/BA/1220:1225 | No text annotation Not in a motif group | ||
| J3_4V6S_019 | 1/BA/990:993, 1/BA/1045:1047, 1/BA/1210:1215 | No text annotation Not in a motif group | ||
| J3_4V6S_020 | 1/BA/1003:1006, 1/BA/1023:1027, 1/BA/1034:1037 | No text annotation Not in a motif group | ||
| J3_4V6S_021 | 1/BA/1063:1068, 1/BA/1107:1114, 1/BA/1186:1193 | No text annotation Not in a motif group | ||
| J3_4V6S_022 | 1/BA/1073:1074, 1/BA/1083:1087, 1/BA/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_4V6S_023 | 1/BA/1116:1119, 1/BA/1154:1158, 1/BA/1181:1184 | No text annotation Not in a motif group | ||
| J3_4V6S_024 | 1/BA/1237:1242, 1/BA/1295:1303, 1/BA/1334:1337 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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