Internal Loop Motif Atlas Release 3.16

#	Motif	Num Nts	Instances
1	IL_89407.3 View exemplar Basepair signature: cWW-cWW-cWW History status: Updated, 1 parent Isolated non-canonical cWW with bulges (15) Isolated cWH basepair (11) UU cWW (8) CA cWW (5) Isolated near basepair (4) CC cWW (4) Self complementary (3) Intercalated tWH (3) AA cWW (2) Decoding loop related (1) UU cWW water inserted (1) UG cWW (1) CA cWW with bulged A (1) UC cWW (1) Single bulged G, near cWW (1) Multiple bulged bases, near cWW (1) Isolated cWS basepair (1)	6	276
2	IL_80007.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged A (85) Multiple bulged bases (6) Basepair outside cWW (3) Major groove platform outside cWW (2) Major groove intercalation (2) Stack outside cWW (1) Major groove platform (1) Major groove outside cWW, minor groove, intercalation pocket (1)	4	107
3	IL_83039.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged U (64) Multiple bulged bases (4)	4	69
4	IL_85877.3 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Updated, 1 parent Tandem non-canonical cWW pairs (54) Non canonical cWW and near pair (2)	8	57
5	IL_80663.4 View exemplar Basepair signature: cWW-tHS-cSH-cWW History status: Exact match Major groove platform (27) Major groove platform; stack outside cWW (9)	5	45
6	IL_04038.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single stack bend (20) Decoding loop related (11) Stack and bulge (2) Intercalated cWW (1) Not an internal loop (1)	5	44
7	IL_06437.4 View exemplar Basepair signature: cWW-tSH-cWW History status: Updated, 1 parent Minor groove platform (41) Single bulged A (1) Major groove outside cWW, minor groove, intercalation pocket (1)	5	43
8	IL_12786.3 View exemplar Basepair signature: cWW-cWH-cWW History status: Exact match Isolated cWH basepair (31) Self complementary (1) cWH basepair with bulged bases (1) Decoding loop with one bulged A (1) Other IL (1)	6	36
9	IL_13730.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (26) Major groove outside cWW, minor groove, intercalation pocket (6)	4	35
10	IL_29549.3 View exemplar Basepair signature: cWW-tSS-L-tSH-tHS-tHS-cWW History status: Exact match Kink-turn (29) Kink-turn with non-sequential stacking (4)	12	33
11	IL_61258.3 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged C (30) Single bulged A (1)	4	32
12	IL_59137.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged G (30) SSU/LSU pseudoknot (1)	4	32
13	IL_56467.3 View exemplar Basepair signature: cWW-tSH-tHS-tHS-cWW History status: Exact match Triple sheared (27) AAA cross-strand stack (4) Other IL (1)	10	32
14	IL_09705.3 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: Exact match Double sheared (23) Other IL (2) tWS-tSW (1) tSH-tHW (1)	8	27
15	IL_75892.2 View exemplar Basepair signature: cWW-tWH-cSH-L-cWS-cWW History status: Exact match C-loop (20)	7	20
16	IL_53523.3 View exemplar Basepair signature: cWW-tWH-L-tHS-cWW History status: Exact match UAA/GAN (17) UAA/GAN related (1)	9	18
17	IL_00168.3 View exemplar Basepair signature: cWW-cSW-cWW History status: Exact match Major groove minor groove platform; mini C-loop (12) Major groove outside cWW, minor groove, intercalation pocket (3)	6	17
18	IL_70995.2 View exemplar Basepair signature: cWW-tSH-L-cWW History status: Exact match Major groove platform; stack outside cWW (11)	6	15
19	IL_39521.2 View exemplar Basepair signature: cWW-tSH-tHW-tHS-cWW History status: Exact match tSH-tHW-tHS (14) 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)	10	15
20	IL_87630.2 View exemplar Basepair signature: cWW-tSH-cSH-cWW History status: Exact match Major groove platform with extra pair (10) Other IL (1)	7	14
21	IL_81326.1 View exemplar Basepair signature: cWW-L-cWW-cWW History status: Exact match Decoding loop related (2)	7	14
22	IL_04346.3 View exemplar Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 8x7 Sarcin-Ricin; G-bulge (14)	15	14
23	IL_50676.2 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (5) Pseudoknot (3) Other IL (1)	8	13
24	IL_35110.3 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 7x6 Sarcin-Ricin; G-bulge (8) Sarcin-Ricin target in LSU H95; G-bulge (5)	13	13
25	IL_67621.2 View exemplar Basepair signature: cWW-cWS-cWW History status: Exact match Isolated cWS basepair (8) Isolated near basepair (2)	6	13
26	IL_95485.3 View exemplar Basepair signature: cWW-cSH-cWW-cWW History status: Exact match Major groove platform with extra cWW (8) Isolated basepair with bulged bases (1)	7	13
27	IL_38958.3 View exemplar Basepair signature: cWW-tHS-cWW History status: Exact match Isolated tHS basepair with bulges (12)	6	12
28	IL_84473.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match	6	11
29	IL_94431.3 View exemplar Basepair signature: cWW-cSH-cWS-cWW History status: Exact match Minor groove platform (10)	6	11
30	IL_03932.1 View exemplar Basepair signature: cWW-tHS-cWW History status: Exact match Minor groove platform with intercalation (4) Single stack bend (2) Minor groove platform (2) Other IL (1)	5	11
31	IL_49607.4 View exemplar Basepair signature: cWW-tSH-tHW-cWW History status: Exact match tSH-tHW (7) Other IL (1)	8	11
32	IL_35167.2 View exemplar Basepair signature: cWW-R-tWH-L-tHS-cWW History status: Exact match UAA/GAN (2) UAA/GAN with extra pair (1) tSH-tHS-tHW (1)	10	9
33	IL_15421.1 View exemplar Basepair signature: cWW-cWW-cSH-cSH-cWW History status: Exact match 8-nt loop receptor (5) Other IL (1) Major groove minor groove platform with extra cWW (1)	8	8
34	IL_19389.1 View exemplar Basepair signature: cWW-L-cSH-cWW History status: Exact match Major groove platform with intercalated tWH (5) Left turn (2)	6	8
35	IL_81328.4 View exemplar Basepair signature: cWW-R-cWW History status: Exact match Basepair outside cWW, intercalation pocket (5) Stack outside cWW (2) Major groove outside cWW, intercalation pocket (1)	5	8
36	IL_81389.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-cWW History status: Exact match UAA/GAN related (5) UAA/GAN variation (3)	9	8
37	IL_60676.2 View exemplar Basepair signature: cWW-R-cWW History status: Exact match Not an internal loop (2) Major groove outside cWW, minor groove, intercalation pocket (2) Minor groove platform (1)	5	8
38	IL_40979.3 View exemplar Basepair signature: cWW-cWW-tWW-cWW History status: Exact match tWW and non-canonical cWW (6) Tandem non-canonical cWW pairs (1) tWW and near cWH (1)	8	8
39	IL_36612.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged U (4)	4	7
40	IL_22946.1 View exemplar Basepair signature: cWW-cHH-cWW History status: Exact match Major groove platform (3) Major groove intercalation (2)	5	7
41	IL_66584.3 View exemplar Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW History status: Exact match tSH-tSH-tHH-tHS (3) Quadruple sheared (2)	12	7
42	IL_15861.3 View exemplar Basepair signature: cWW-L-L-L-tSW-cSH-cWW History status: Exact match SSU/LSU pseudoknot (6)	10	7
43	IL_97601.4 View exemplar Basepair signature: cWW-tWH-cSH-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (7)	8	7
44	IL_66414.3 View exemplar Basepair signature: cWW-cWW-tSH-tHS-tHS-L-R-cWW History status: Exact match Triple sheared with non-canonical cWW (4)	14	6
45	IL_94181.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Other IL (2) Intercalated cWS (2) Single base bend (1) Single stack bend with bulge (1)	5	6
46	IL_56455.1 View exemplar Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW History status: Exact match Bacterial 5S Loop E (6)	18	6
47	IL_17470.3 View exemplar Basepair signature: cWW-R-tHW-tHW-tWW-cWW History status: Exact match tHW-tHW cross-strand stack (5)	11	6
48	IL_51265.1 View exemplar Basepair signature: cWW-tSS-L-tSH-tHS-cWW History status: Exact match Kink-turn from U4 (5) Kink-turn from T-box riboswitch (1)	10	6
49	IL_90991.3 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (4)	4	6
50	IL_94518.2 View exemplar Basepair signature: cWW-cWW-L-R-cWW-L-R-cWW History status: Exact match Other IL (1) Tandem non-canonical cWW pairs with near WC pairs (1)	12	6
51	IL_47154.3 View exemplar Basepair signature: cWW-cSW-L-R-cWW History status: Exact match	8	6
52	IL_58103.3 View exemplar Basepair signature: cWW-cSH-L-cWS-tSW-R-R-cWW History status: Exact match Symmetric double minor groove platform (5)	10	6
53	IL_14148.3 View exemplar Basepair signature: cWW-cWW-tSH-cWW History status: Exact match Minor groove platform with extra cWW (5)	7	6
54	IL_49767.2 View exemplar Basepair signature: cWW-cWW-tWH-L-tHS-cWW History status: Exact match UAA/GAN with extra cWW (3)	11	5
55	IL_83162.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHH-cWW History status: Exact match	11	5
56	IL_77853.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged A (2) Intercalation pocket (1) Major groove intercalation (1)	4	5
57	IL_17069.1 View exemplar Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW History status: Exact match Kink-turn related (3)	13	5
58	IL_96042.1 View exemplar Basepair signature: cWW-cWW-cSH-R-cWW History status: Exact match Major groove minor groove platform with extra cWW (4)	8	5
59	IL_29978.2 View exemplar Basepair signature: cWW-L-L-L-tHS-cWW History status: Exact match	9	5
60	IL_23544.1 View exemplar Basepair signature: cWW-L-R-R-cWW History status: Exact match	7	5
61	IL_98882.1 View exemplar Basepair signature: cWW-R-cWW History status: Exact match Decoding loop related (2) Intercalated tWH (1)	5	5
62	IL_97152.1 View exemplar Basepair signature: cWW-cWW-R-cWW-cWW History status: Exact match UAA/GAN variation (1) Minor groove platform related (1)	9	5
63	IL_54997.1 View exemplar Basepair signature: cWW-tWW-cWW History status: Exact match Isolated tWW turn (4)	6	5
64	IL_57188.1 View exemplar Basepair signature: cWW-tWW-cSH-L-tWW-cSH-cWW History status: Exact match	11	5
65	IL_60992.3 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW History status: Exact match	16	5
66	IL_55953.1 View exemplar Basepair signature: cWW-tSH-R-tHS-L-bif-cWW History status: Exact match	12	5
67	IL_90538.2 View exemplar Basepair signature: cWW-tSS-L-tSH-tSS-tHS-L-R-L-cWW History status: Exact match Kink-turn (4)	13	4
68	IL_34626.2 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	4
69	IL_04688.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	4
70	IL_34915.2 View exemplar Basepair signature: cWW-R-tWH-cSH-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (4)	9	4
71	IL_66745.2 View exemplar Basepair signature: cWW-cWW-L-R-cWW-cWW History status: Exact match	10	4
72	IL_50949.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW with bulges (4)	6	4
73	IL_67474.2 View exemplar Basepair signature: cWW-R-R-cWW History status: Exact match	6	4
74	IL_19954.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-cWW-cWW History status: Exact match	12	4
75	IL_07527.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: Exact match Multiple bulged bases with near cWW (1)	9	4
76	IL_60695.1 View exemplar Basepair signature: cWW-L-R-R-R-cWW History status: Exact match	8	4
77	IL_97697.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L History status: Exact match Reverse turn (4)	0	4
78	IL_08296.1 View exemplar Basepair signature: cWW-tSH-R-R-cWW History status: Exact match	8	4
79	IL_45944.2 View exemplar Basepair signature: cWW-L-L-tWH-L-L-L-cWW History status: Exact match	11	4
80	IL_68506.1 View exemplar Basepair signature: cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW History status: Exact match	0	4
81	IL_08376.1 View exemplar Basepair signature: cWW-tWH-tSW-L-cWS-cWW History status: Exact match C-loop (4)	7	4
82	IL_61017.1 View exemplar Basepair signature: cWW-L-R-R-R-cWW History status: Exact match	8	4
83	IL_68780.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-R-cWW History status: Exact match Kink-turn (3)	12	3
84	IL_90423.2 View exemplar Basepair signature: cWW-cWW-L-R-cWW History status: Exact match Minor groove platform related (1)	8	3
85	IL_08966.3 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match CC cWW (1)	6	3
86	IL_93830.2 View exemplar Basepair signature: cWW-cWW-bif-R-cSH-tWH-tHS-cWW History status: Exact match 7x7 Sarcin-Ricin with intercalated A; G-bulge (3)	14	3
87	IL_74051.1 View exemplar Basepair signature: cWW-tSS-tSH-L-tHS-cWW-L History status: Exact match Kink-turn (1)	0	3
88	IL_26769.1 View exemplar Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW History status: Exact match tSH-tHW-tHS-cWW (3)	12	3
89	IL_58960.1 View exemplar Basepair signature: cWW-L-cWW-L-tWW-L-R-L History status: Exact match	0	3
90	IL_90600.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: Exact match	8	3
91	IL_09732.3 View exemplar Basepair signature: cWW-cWW-L-R-L-cWW History status: Exact match Multiple bulged bases with non-canonical cWW (1)	9	3
92	IL_27393.3 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: Exact match	10	3
93	IL_38634.2 View exemplar Basepair signature: cWW-cWH-tWS-cWW History status: Exact match cWH basepair and non-canonical AC (3)	8	3
94	IL_54678.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	4	3
95	IL_23663.2 View exemplar Basepair signature: cWW-cSH-cWW-cWW History status: Exact match Isolated non-canonical cWW with bulges (1)	7	3
96	IL_79393.3 View exemplar Basepair signature: cWW-L-R-R-R-R-R-L-cWW History status: Exact match	11	3
97	IL_91482.3 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged G (1)	4	3
98	IL_75283.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW History status: Exact match	18	3
99	IL_16109.2 View exemplar Basepair signature: cWW-R-cSH-tWH-tHS-cWW History status: Exact match 5x5 Sarcin-Ricin with intercalated A; G-bulge (2) AAA cross-strand stack (1)	10	3
100	IL_82426.2 View exemplar Basepair signature: cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW History status: Exact match	14	3
101	IL_64239.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged U (2)	4	3
102	IL_75461.1 View exemplar Basepair signature: cWW-tSS-cSS-L-R-cWW History status: Exact match	7	3
103	IL_35904.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW History status: Exact match Kink-turn (3)	12	3
104	IL_48280.1 View exemplar Basepair signature: cWW-tSH-R-cWW History status: Exact match	7	3
105	IL_90106.3 View exemplar Basepair signature: cWW-tHH-tHS-cWW History status: Exact match	8	3
106	IL_07931.1 View exemplar Basepair signature: cWW-L-R-R-cWW History status: Exact match	7	3
107	IL_71960.2 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged A (1) Minor groove platform (1)	5	3
108	IL_24606.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW History status: Exact match 8x6 Sarcin-Ricin with inserted Y; G-bulge (3)	14	3
109	IL_68057.1 View exemplar Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW History status: Exact match Kink-turn (3)	12	3
110	IL_80138.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: Exact match Isolated basepair with bulged bases (1)	8	3
111	IL_72809.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged A (1)	4	3
112	IL_64900.1 View exemplar Basepair signature: cWW-cWW-tSS-tSH-L-tHS-R-cWW-L History status: Exact match Kink-turn (3)	0	3
113	IL_24905.4 View exemplar Basepair signature: cWW-L-cWS-cWW History status: Exact match	7	3
114	IL_83121.2 View exemplar Basepair signature: cWW-cSS-R-cWW History status: Exact match 180 degree turn (1)	5	3
115	IL_87284.1 View exemplar Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW History status: Exact match tSH-tHW-tWH-tHS (3)	0	3
116	IL_25657.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	13	2
117	IL_53318.1 View exemplar Basepair signature: cWW-cWW-tWH-tSH-tHS-cWW History status: Exact match	10	2
118	IL_74030.1 View exemplar Basepair signature: cWW-cWW-L-R-tSH-cWW-cWW History status: Exact match Other IL (1)	11	2
119	IL_16855.1 View exemplar Basepair signature: cWW-L-R-cSW-cSH-cWW History status: Exact match	8	2
120	IL_26351.1 View exemplar Basepair signature: cWW-cWW-tSH-tWH-tHW-tHS-cWW-cWW History status: Exact match tSH-tHW-tHS with extra cWW pairs (1)	14	2
121	IL_36973.3 View exemplar Basepair signature: cWW-tSH-L-R-R-R-L-L-cWW-cWW History status: Exact match	14	2
122	IL_58760.1 View exemplar Basepair signature: cWW-tSH-R-tHH-tHS-cWW History status: Exact match	11	2
123	IL_19244.1 View exemplar Basepair signature: cWW-L-L-L-cWW History status: Exact match	7	2
124	IL_77870.1 View exemplar Basepair signature: cWW-L-R-L-tHS-L-cWW-L-cWW History status: Exact match	13	2
125	IL_80884.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-L-L History status: Exact match	0	2
126	IL_42032.1 View exemplar Basepair signature: cWW-cSH-cWW-tWH-L-cWW-L-L History status: Exact match	11	2
127	IL_88269.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-tWW-cWW History status: Exact match 6x5 Sarcin-Ricin; G-bulge (2)	11	2
128	IL_90612.1 View exemplar Basepair signature: cWW-tWH-tWH-tWH-L-R-R-L-tWW-cWW History status: Exact match	14	2
129	IL_05062.4 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: Exact match Triple sheared related (2)	11	2
130	IL_27601.1 View exemplar Basepair signature: cWW-tHS-cWW History status: Exact match	6	2
131	IL_19557.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	5	2
132	IL_43210.1 View exemplar Basepair signature: cWW-cWW-bif-cWS-cWW History status: Exact match	8	2
133	IL_78994.1 View exemplar Basepair signature: cWW-cSW-cWW-cWW History status: Exact match	8	2
134	IL_27825.1 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match Tandem non-canonical cWW pairs (1)	6	2
135	IL_39279.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (2)	8	2
136	IL_70285.1 View exemplar Basepair signature: cWW-L-R-cWW-L-L-tSW-L-cWW History status: Exact match	13	2
137	IL_99373.1 View exemplar Basepair signature: cWW-bif-L-cWW History status: Exact match	7	2
138	IL_19724.1 View exemplar Basepair signature: cWW-cSH-R-R-cWW History status: Exact match	7	2
139	IL_02349.3 View exemplar Basepair signature: cWW-tSH-tWH-cSH-tWH-tHS-cWW History status: Exact match 8x6 Sarcin-Ricin with bulged A; G-bulge (2)	13	2
140	IL_27900.1 View exemplar Basepair signature: cWW-tSH-cWW History status: Exact match Multiple bulged bases (1) Minor groove platform (1)	5	2
141	IL_81522.1 View exemplar Basepair signature: cWW-cWS-L-cWW History status: Exact match Major groove minor groove platform with intercalation; mini C-loop (2)	0	2
142	IL_45034.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: Exact match	10	2
143	IL_67703.1 View exemplar Basepair signature: cWW-tWW-L-tWH-R-R-R-R-cSH-R-R-L-tHH-tHS-cWW History status: Exact match	22	2
144	IL_89877.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged A (1)	4	2
145	IL_18369.2 View exemplar Basepair signature: cWW-cSH-tHS-cWW History status: Exact match	8	2
146	IL_28060.3 View exemplar Basepair signature: cWW-tHH-L-cWS-R-cWW History status: Exact match Major groove minor groove platform with tHH (2)	8	2
147	IL_51590.1 View exemplar Basepair signature: cWW-cSH-tWH-cSH-cWW-cWW History status: Exact match C-loop with extra cWW pair (1) Other IL (1)	9	2
148	IL_92440.1 View exemplar Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW History status: Exact match tWH-tWH-tHW-tHW (2)	14	2
149	IL_86428.1 View exemplar Basepair signature: cWW-tHW-cWW-L-cSH-R-tHS-cWW-cWW History status: Exact match	12	2
150	IL_95511.1 View exemplar Basepair signature: cWW-R-R-R-tSW-L-L-cWW History status: Exact match	11	2
151	IL_36143.2 View exemplar Basepair signature: cWW-R-cWW History status: Exact match	5	2
152	IL_57850.1 View exemplar Basepair signature: cWW-tHH-cWW History status: Exact match Isolated near basepair (1)	6	2
153	IL_34378.1 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match	6	2
154	IL_95688.1 View exemplar Basepair signature: cWW-L-cSS-cSS-L-R-cWW History status: Exact match	11	2
155	IL_16456.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-tSS-R-cWW History status: Exact match Kink-turn (2)	11	2
156	IL_18894.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: Exact match Quadruple sheared (2)	12	2
157	IL_52451.4 View exemplar Basepair signature: cWW-cWW-cWH-cWW History status: Exact match	8	2
158	IL_34470.1 View exemplar Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2)	17	2
159	IL_56020.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	2
160	IL_04356.1 View exemplar Basepair signature: cWW-tWH-tWH-L-R-L-tWW-cWW History status: Exact match	13	1
161	IL_16702.1 View exemplar Basepair signature: cWW-tSH-tWH-tHW-cWH-tSS-tHW-tHH-cWW History status: Exact match	15	1
162	IL_58390.1 View exemplar Basepair signature: cWW-bif-tSW-L-L-L-cWW-cSW-R-cWW History status: Exact match	14	1
163	IL_80617.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	1
164	IL_98353.1 View exemplar Basepair signature: cWW-cWS-L-L-cWW History status: Exact match	8	1
165	IL_19048.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cSH-L-R-cWW-cWW History status: Exact match	0	1
166	IL_29509.1 View exemplar Basepair signature: cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW History status: Exact match	15	1
167	IL_41414.1 View exemplar Basepair signature: cWW-L-R-L-cWW-tWH-cWW-L-L-L-R-L-R-cSH-L-L History status: Exact match	0	1
168	IL_61242.1 View exemplar Basepair signature: cWW-cWW-L-R-L-R-cWW History status: Exact match	0	1
169	IL_14397.1 View exemplar Basepair signature: cWW-tWH-tHH-tHS-cWW History status: Exact match	10	1
170	IL_22745.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	5	1
171	IL_34590.1 View exemplar Basepair signature: cWW-L-R-R-R-R-L-L-tHH-cSH-tWH-tHS-cWW History status: Exact match 9x9 Sarcin-Ricin with pseudoknotted region; G-bulge (1)	18	1
172	IL_46112.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L History status: Exact match	0	1
173	IL_56105.1 View exemplar Basepair signature: cWW-tSH-tSH-cWW-L History status: Exact match	8	1
174	IL_95942.1 View exemplar Basepair signature: cWW-L-R-L-L-L-L-L-cWW History status: Exact match	11	1
175	IL_04667.1 View exemplar Basepair signature: cWW-tWH-cSW-L-R-R-L-tHS-cWW History status: Exact match	13	1
176	IL_49850.1 View exemplar Basepair signature: cWW-L-R-L-L-L-cWW-cSW-R-cWW History status: Exact match	13	1
177	IL_68913.1 View exemplar Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW History status: Exact match	14	1
178	IL_98711.1 View exemplar Basepair signature: cWW-tSH-tHW-tWW-cWW History status: Exact match tSH-tHW-tWW (1)	10	1
179	IL_41593.1 View exemplar Basepair signature: cWW-cHW-tHW-tHW-tHW-bif-cWW History status: Exact match	14	1
180	IL_84315.1 View exemplar Basepair signature: cWW-tHS-cWS-R-tSW-R-R-cWW History status: Exact match	10	1
181	IL_22821.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L History status: Exact match Pseudoknot (1)	0	1
182	IL_46401.1 View exemplar Basepair signature: cWW-L-L-L-L-tHH-cWW History status: Exact match	10	1
183	IL_56283.1 View exemplar Basepair signature: cWW-L-L-L-L-L-cWW History status: Exact match	9	1
184	IL_66497.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-bif-cWW History status: Exact match	12	1
185	IL_87677.1 View exemplar Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW History status: Exact match tWH-tWH-tHW-tHW (1)	12	1
186	IL_95993.1 View exemplar Basepair signature: cWW-R-tSS-tWW-tWW-cWW History status: Exact match Kink-turn related (1)	11	1
187	IL_38271.1 View exemplar Basepair signature: cWW-L-R-cSW-cWW History status: Exact match Self complementary (1)	8	1
188	IL_69091.1 View exemplar Basepair signature: cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L History status: Exact match	0	1
189	IL_98867.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	4	1
190	IL_19296.1 View exemplar Basepair signature: cWW-cSS-L-tHW-tSS-L-L-L-L-L-L-cWW History status: Exact match	14	1
191	IL_29821.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-cWW History status: Exact match	10	1
192	IL_53529.1 View exemplar Basepair signature: cWW-L-cWH-R-R-cWW History status: Exact match	8	1
193	IL_61275.1 View exemplar Basepair signature: cWW-L-R-tHW-cWW History status: Exact match	8	1
194	IL_74184.1 View exemplar Basepair signature: cWW-L-tHS-L-cWW-L-L-L History status: Exact match	0	1
195	IL_84409.1 View exemplar Basepair signature: cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L History status: Exact match	0	1
196	IL_94351.1 View exemplar Basepair signature: cWW-L-R-L-R-L-tHS-cWW History status: Exact match	0	1
197	IL_00587.1 View exemplar Basepair signature: cWW-tSH-L-R-L-L-cWW History status: Exact match	10	1
198	IL_15557.1 View exemplar Basepair signature: cWW-L-R-cWW-cWW-cWW History status: Exact match	10	1
199	IL_34780.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW History status: Exact match Kink-turn (1)	0	1
200	IL_46461.1 View exemplar Basepair signature: cWW-L-tHH-L-tHS-L-cWW-L-L-L-L-R-L-R-tSW-R-R-L-R-L-R-L-R History status: Exact match	0	1
201	IL_78120.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-bif-cWW History status: Exact match	12	1
202	IL_04736.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW History status: Exact match	0	1
203	IL_50789.1 View exemplar Basepair signature: cWW-L-L-L-cWW History status: Exact match	7	1
204	IL_69457.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW History status: Exact match	13	1
205	IL_98876.1 View exemplar Basepair signature: cWW-cWW-L-R-R-tHW-bif-cWW History status: Exact match	13	1
206	IL_09986.1 View exemplar Basepair signature: cWW-L-R-L-tHW-L-L-cWW History status: Exact match	11	1
207	IL_42092.1 View exemplar Basepair signature: cWW-tSH-L-L-L-cWW History status: Exact match Isolated basepair with bulged bases (1)	9	1
208	IL_54670.1 View exemplar Basepair signature: cWW-tSH-L-R-tHH-tHS-cWW History status: Exact match	12	1
209	IL_61812.1 View exemplar Basepair signature: cWW-cWW-tSH-tHW-cSH-tHH-tHS-cWW-cWW History status: Exact match 9x8 Sarcin-Ricin; G-bulge (1)	17	1
210	IL_74271.1 View exemplar Basepair signature: cWW-L-L-L-tWH-L-L-L-cWW History status: Exact match	12	1
211	IL_01335.1 View exemplar Basepair signature: cWW-cHW-L-L-L-L-L-L-L-L-cWW History status: Exact match	14	1
212	IL_15795.1 View exemplar Basepair signature: cWW-cSH-R-cWW History status: Exact match Minor groove platform (1)	6	1
213	IL_46732.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: Exact match	8	1
214	IL_78906.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: Exact match	7	1
215	IL_89055.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-cWW-L-L History status: Exact match	0	1
216	IL_96335.1 View exemplar Basepair signature: cWW-cSH-L-tSH-cWW-R-R-cWW History status: Exact match	11	1
217	IL_17560.1 View exemplar Basepair signature: cWW-tHW-tHS-cWW-cWW History status: Exact match	10	1
218	IL_59724.1 View exemplar Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW History status: Exact match 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge (1)	0	1
219	IL_69979.1 View exemplar Basepair signature: cWW-L-R-R-R-R-L-L-L-cWW History status: Exact match	12	1
220	IL_90922.1 View exemplar Basepair signature: cWW-tSH-tWH-tHS-tSS-tSS-R-cWW History status: Exact match Kink-turn (1)	12	1
221	IL_11882.1 View exemplar Basepair signature: cWW-L-R-tWH-tWH-L-R-L-cWW History status: Exact match	0	1
222	IL_31504.1 View exemplar Basepair signature: cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L History status: Exact match	0	1
223	IL_61852.1 View exemplar Basepair signature: cWW-cWW-tSH-tWH-tHS-tSS-tSS-R-cWW History status: Exact match Kink-turn (1)	14	1
224	IL_74719.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: Exact match Double sheared (1)	8	1
225	IL_85630.1 View exemplar Basepair signature: cWW-tSH-L-R-L-R-L-cWW-L-cWW-L History status: Exact match	0	1
226	IL_94501.1 View exemplar Basepair signature: cWW-cWW-cWW-tHW-cWH-cSH-cWH-cSH-tHS-cWW History status: Exact match	15	1
227	IL_01502.1 View exemplar Basepair signature: cWW-L-R-R-L-L-L-L-cWW-cWW History status: Exact match	13	1
228	IL_35058.1 View exemplar Basepair signature: cWW-tSW-L-cWS-tSW-R-R-cWW History status: Exact match Symmetric double minor groove platform (1)	9	1
229	IL_47108.1 View exemplar Basepair signature: cWW-L-R-L-tHH-L-cWW History status: Exact match	0	1
230	IL_56501.1 View exemplar Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW History status: Exact match 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)	13	1
231	IL_96942.1 View exemplar Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW History status: Exact match	14	1
232	IL_06300.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW History status: Exact match	0	1
233	IL_17765.1 View exemplar Basepair signature: cWW-tWH-cHW-L-tSS-cSS-cWW-R-L History status: Exact match	0	1
234	IL_60049.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: Exact match	7	1
235	IL_12750.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW History status: Exact match	0	1
236	IL_31890.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L History status: Exact match	0	1
237	IL_44325.1 View exemplar Basepair signature: cWW-cWH-cWW-L History status: Exact match	0	1
238	IL_54896.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R History status: Exact match	0	1
239	IL_62654.1 View exemplar Basepair signature: cWW-tSH-tHH-tHS-cWW History status: Exact match tSH-tHH-tHS (1)	0	1
240	IL_74736.1 View exemplar Basepair signature: cWW-tSH-L-R-R-L-cWW History status: Exact match	9	1
241	IL_85661.1 View exemplar Basepair signature: cWW-R-bif-tHW-tHS-cWW History status: Exact match	10	1
242	IL_15978.1 View exemplar Basepair signature: cWW-tSH-L-cWS-cWW-L History status: Exact match	11	1
243	IL_23735.1 View exemplar Basepair signature: cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW History status: Exact match	26	1
244	IL_56693.1 View exemplar Basepair signature: cWW-R-R-tWH-L-R-cWW History status: Exact match	10	1
245	IL_89731.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R-cWW History status: Exact match	10	1
246	IL_17971.1 View exemplar Basepair signature: cWW-tWW-L-tWW-L-cWW History status: Exact match	10	1
247	IL_39287.1 View exemplar Basepair signature: cWW-L-R-L-tSH-tSS-L-tHS-cWW-L-L History status: Exact match	0	1
248	IL_51366.1 View exemplar Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW History status: Exact match	20	1
249	IL_60171.1 View exemplar Basepair signature: cWW-L-tWH-R-R-R-cWW History status: Exact match Major groove platform; stack outside cWW (1)	9	1
250	IL_70801.1 View exemplar Basepair signature: cWW-cWW-L-R-tWW-L-R-L-cWW History status: Exact match	13	1
251	IL_99645.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Single bulged G (1)	4	1
252	IL_32181.1 View exemplar Basepair signature: cWW-cWW-cWW-L-cSW-L-R-R-R-cWW History status: Exact match	15	1
253	IL_63750.1 View exemplar Basepair signature: cWW-tSS-cSS-tWW-L-tSH-R-R-cWW History status: Exact match	11	1
254	IL_94878.1 View exemplar Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW History status: Exact match	26	1
255	IL_03420.1 View exemplar Basepair signature: cWW-R-cSH-tWH-tSH-tHS-cWW History status: Exact match	13	1
256	IL_23934.1 View exemplar Basepair signature: cWW-R-tWH-tHS-cWW History status: Exact match tSH-tHW (1)	9	1
257	IL_47743.1 View exemplar Basepair signature: cWW-cSW-tWH-cSH-L-cWS-cWW History status: Exact match	9	1
258	IL_56867.1 View exemplar Basepair signature: cWW-L-R-R-L-L-cSS-L-cWW-cWW History status: Exact match	13	1
259	IL_79734.1 View exemplar Basepair signature: cWW-R-R-R-R-cWW History status: Exact match	8	1
260	IL_97253.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L-R-L History status: Exact match	0	1
261	IL_39507.1 View exemplar Basepair signature: cWW-L-R-L-L-L-cWW History status: Exact match	9	1
262	IL_92343.1 View exemplar Basepair signature: cWW-L-R-R-R-L-L-cWW History status: Exact match	10	1
263	IL_99902.1 View exemplar Basepair signature: cWW-L-R-R-R-R-R-cWW History status: Exact match	10	1
264	IL_13013.1 View exemplar Basepair signature: cWW-tWW-L-tWH-R-R-R-cSH-R-R-L-tHH-tHS-cWW History status: Exact match	21	1
265	IL_20245.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L History status: Exact match	25	1
266	IL_33557.1 View exemplar Basepair signature: cWW-tHH-R-L-R-L-L-R-L-R-cWW History status: Exact match	0	1
267	IL_45257.1 View exemplar Basepair signature: cWW-tSH-cWH-tWH-tSS-tHW-tHH-cWW History status: Exact match	14	1
268	IL_55666.1 View exemplar Basepair signature: cWW-R-cWH-L-L-L-cWW History status: Exact match	9	1
269	IL_85931.1 View exemplar Basepair signature: cWW-cSW-tSH-tHH-tSS-tSS-R-R-cWW History status: Exact match	13	1
270	IL_16160.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	1
271	IL_24106.1 View exemplar Basepair signature: cWW-tSH-tWH-tWH-R-R-R-R-R-R-R-cWW History status: Exact match	17	1
272	IL_67834.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-tWW-R-R-R-R-R-R-R-R-R-R-R-R-cWW History status: Exact match	24	1
273	IL_18459.1 View exemplar Basepair signature: cWW-cWW-R-cWW History status: Exact match	7	1
274	IL_28512.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	13	1
275	IL_51877.1 View exemplar Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW History status: Exact match	13	1
276	IL_82988.1 View exemplar Basepair signature: cWW-cWW-L-L-tHS-cWW History status: Exact match	10	1
277	IL_13394.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R History status: Exact match	0	1
278	IL_20463.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R History status: Exact match 7x11 Sarcin-Ricin with pseudoknotted region; G-bulge (1)	0	1
279	IL_34013.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	1
280	IL_45481.1 View exemplar Basepair signature: cWW-L-R-cHW-L-L-tSW-L-cWW History status: Exact match	13	1
281	IL_55896.1 View exemplar Basepair signature: cWW-tSH-tHS-tWS-cWW History status: Exact match tSH-tHS-tWS (1)	10	1
282	IL_64842.1 View exemplar Basepair signature: cWW-L-tWH-L-cWW-L-cSH History status: Exact match	0	1
283	IL_75840.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	1
284	IL_16348.1 View exemplar Basepair signature: cWW-cSH-R-R-cWW-cWW History status: Exact match	9	1
285	IL_49109.1 View exemplar Basepair signature: cWW-tSH-tSH-tHW-tHH-tHS-cWW-cWW History status: Exact match tSH-tHW-tHH-tHS (1)	16	1
286	IL_90157.1 View exemplar Basepair signature: cWW-L-L-L-L-tHH-cWS-cWW History status: Exact match	12	1
287	IL_18572.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (1)	4	1
288	IL_28564.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: New id, no parents	0	1
289	IL_39651.1 View exemplar Basepair signature: cWW-cSH-cWW History status: Exact match Minor groove platform with intercalation (1)	5	1
290	IL_51971.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	1
291	IL_93094.1 View exemplar Basepair signature: cWW-L-tHH-L-tHS-L-cWW History status: Exact match Reverse kink-turn (1)	0	1
292	IL_21121.1 View exemplar Basepair signature: cWW-tSW-cWS-cSH-tSW-tWH-R-R-cWW-cWW History status: Exact match	0	1
293	IL_86571.1 View exemplar Basepair signature: cWW-cSW-tHS-cWW-cWW-cWW History status: Exact match	11	1
294	IL_36582.1 View exemplar Basepair signature: cWW-L-R-L-tHH-L-tWH-tHS-cWW History status: Exact match 8x6 Sarcin-Ricin with inserted A; G-bulge (1)	14	1
295	IL_80355.1 View exemplar Basepair signature: cWW-tWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	23	1
296	IL_90348.1 View exemplar Basepair signature: cWW-cSW-L-cWW-L History status: Exact match	7	1
297	IL_98261.1 View exemplar Basepair signature: cWW-L-R-R-L-L-L-cWW History status: Exact match	10	1
298	IL_28999.1 View exemplar Basepair signature: cWW-R-R-R-tSW-L-cWW History status: Exact match	10	1
299	IL_72852.1 View exemplar Basepair signature: cWW-R-R-cWW History status: Exact match	6	1
300	IL_93585.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-tWH-L-cSH-L History status: Exact match	0	1
301	IL_22436.1 View exemplar Basepair signature: cWW-L-tWH-tHW-cWW-cWW History status: Exact match Kink-turn related (1)	0	1
302	IL_45988.1 View exemplar Basepair signature: cWW-R-tWH-tHS-cWW History status: Exact match	9	1
303	IL_65055.1 View exemplar Basepair signature: cWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW History status: Exact match	23	1
304	IL_76900.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW History status: Exact match Kink-turn (1)	12	1
305	IL_95811.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-L-R-L History status: Exact match Vitamin B12 Aptamer (1)	0	1