6GWT Internal, Hairpin and 3-way Junction Loop Motifs

177 Internal loops
105 Hairpin loops
26 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	IL_6GWT_001 ➜	1/A/24:30,1/A/510:516	NA	NA
2	IL_6GWT_002 ➜	1/A/36:37,1/A/442:444	NA	NA
3	IL_6GWT_003 ➜	1/A/43:44,1/A/434:436	NA	NA
4	IL_6GWT_004 ➜	1/A/81:85,1/A/97:105	NA	NA
5	IL_6GWT_005 ➜	1/A/183:184,1/A/212:214	NA	NA
6	IL_6GWT_006 ➜	1/A/188:194,1/A/201:208	NA	NA
7	IL_6GWT_007 ➜	1/A/239:245,1/A/253:258	NA	NA
8	IL_6GWT_008 ➜	1/A/269:271,1/A/366:370	NA	NA
9	IL_6GWT_009 ➜	1/A/274:282,1/A/358:363	NA	NA
10	IL_6GWT_010 ➜	1/A/293:295,1/A/343:347	NA	NA
11	IL_6GWT_011 ➜	1/A/481:484,1/A/496:509	NA	NA
12	IL_6GWT_012 ➜	1/A/536:539,1/A/554:557	NA	NA
13	IL_6GWT_013 ➜	1/A/564:566,1/A/575:577	NA	NA
14	IL_6GWT_014 ➜	1/A/606:610,1/A/618:622	NA	NA
15	IL_6GWT_015 ➜	1/A/672:674,1/A/806:808	NA	NA
16	IL_6GWT_016 ➜	1/A/674:678,1/A/799:806	NA	NA
17	IL_6GWT_017 ➜	1/A/697:698,1/A/763:765	NA	NA
18	IL_6GWT_018 ➜	1/A/702:703,1/A/728:730	NA	NA
19	IL_6GWT_019 ➜	1/A/703:707,1/A/724:728	NA	NA
20	IL_6GWT_020 ➜	1/A/738:740,1/A/757:758	NA	NA
21	IL_6GWT_021 ➜	1/A/775:777,1/A/787:791	NA	NA
22	IL_6GWT_022 ➜	1/A/844:847,1/A/933:934	NA	NA
23	IL_6GWT_023 ➜	1/A/847:848,1/A/930:933	NA	NA
24	IL_6GWT_024 ➜	1/A/850:851,1/A/926:928	NA	NA
25	IL_6GWT_025 ➜	1/A/856:862,1/A/915:921	NA	NA
26	IL_6GWT_026 ➜	1/A/862:863,1/A/913:915	NA	NA
27	IL_6GWT_027 ➜	1/A/864:868,1/A/909:912	NA	NA
28	IL_6GWT_028 ➜	1/A/870:872,1/A/905:907	NA	NA
29	IL_6GWT_029 ➜	1/A/875:879,1/A/898:902	NA	NA
30	IL_6GWT_030 ➜	1/A/880:882,1/A/894:897	NA	NA
31	IL_6GWT_031 ➜	1/A/994:996,1/A/1159:1160	NA	NA
32	IL_6GWT_032 ➜	1/A/998:1002,1/A/1153:1157	NA	NA
33	IL_6GWT_033 ➜	1/A/1004:1011,1/A/1150:1151	NA	NA
34	IL_6GWT_034 ➜	1/A/1011:1013,1/A/1149:1150	NA	NA
35	IL_6GWT_035 ➜	1/A/1018:1024,1/A/1140:1144	NA	NA
36	IL_6GWT_036 ➜	1/A/1024:1030,1/A/1124:1140	NA	NA
37	IL_6GWT_037 ➜	1/A/1031:1034,1/A/1121:1123	NA	NA
38	IL_6GWT_038 ➜	1/A/1038:1041,1/A/1114:1117	NA	NA
39	IL_6GWT_039 ➜	1/A/1043:1051,1/A/1108:1112	NA	NA
40	IL_6GWT_040 ➜	1/A/1055:1087,1/A/1102:1104	NA	NA
41	IL_6GWT_041 ➜	1/A/1087:1090,1/A/1101:1102	NA	NA
42	IL_6GWT_042 ➜	1/A/1196:1198,1/A/1247:1250	NA	NA
43	IL_6GWT_043 ➜	1/A/1202:1206,1/A/1240:1243	NA	NA
44	IL_6GWT_044 ➜	1/A/1208:1215,1/A/1234:1238	NA	NA
45	IL_6GWT_045 ➜	1/A/1262:1269,1/A/2011:2017	NA	NA
46	IL_6GWT_046 ➜	1/A/1310:1313,1/A/1603:1604	NA	NA
47	IL_6GWT_047 ➜	1/A/1319:1323,1/A/1331:1333	NA	NA
48	IL_6GWT_048 ➜	1/A/1351:1355,1/A/1376:1380	NA	NA
49	IL_6GWT_049 ➜	1/A/1357:1361,1/A/1370:1374	NA	NA
50	IL_6GWT_050 ➜	1/A/1415:1416,1/A/1582:1587	NA	NA
51	IL_6GWT_051 ➜	1/A/1417:1421,1/A/1577:1581	NA	NA
52	IL_6GWT_052 ➜	1/A/1432:1435,1/A/1557:1561	NA	NA
53	IL_6GWT_053 ➜	1/A/1437:1440,1/A/1551:1555	NA	NA
54	IL_6GWT_054 ➜	1/A/1468:1471,1/A/1520:1524	NA	NA
55	IL_6GWT_055 ➜	1/A/1474:1479,1/A/1512:1517	NA	NA
56	IL_6GWT_056 ➜	1/A/1481:1482,1/A/1507:1510	NA	NA
57	IL_6GWT_057 ➜	1/A/1489:1491,1/A/1499:1500	NA	NA
58	IL_6GWT_058 ➜	1/A/1526:1529,1/A/1542:1546	NA	NA
59	IL_6GWT_059 ➜	1/A/1651:1656,1/A/2004:2006	NA	NA
60	IL_6GWT_060 ➜	1/A/1663:1665,1/A/1995:1997	NA	NA
61	IL_6GWT_061 ➜	1/A/1666:1669,1/A/1993:1994	NA	NA
62	IL_6GWT_062 ➜	1/A/1669:1674,1/A/1990:1993	NA	NA
63	IL_6GWT_063 ➜	1/A/1686:1691,1/A/1696:1702	NA	NA
64	IL_6GWT_064 ➜	1/A/1712:1718,1/A/1742:1746	NA	NA
65	IL_6GWT_065 ➜	1/A/1720:1724,1/A/1736:1740	NA	NA
66	IL_6GWT_066 ➜	1/A/1770:1771,1/A/1980:1982	NA	NA
67	IL_6GWT_067 ➜	1/A/1798:1804,1/A/1813:1821	NA	NA
68	IL_6GWT_068 ➜	1/A/1837:1840,1/A/1902:1903	NA	NA
69	IL_6GWT_069 ➜	1/A/1841:1842,1/A/1898:1901	NA	NA
70	IL_6GWT_070 ➜	1/A/1846:1849,1/A/1893:1894	NA	NA
71	IL_6GWT_071 ➜	1/A/1864:1867,1/A/1874:1878	NA	NA
72	IL_6GWT_072 ➜	1/A/1933:1934,1/A/1964:1967	NA	NA
73	IL_6GWT_073 ➜	1/A/1934:1945,1/A/1961:1964	NA	NA
74	IL_6GWT_074 ➜	1/A/2050:2052,1/A/2617:2618	NA	NA
75	IL_6GWT_075 ➜	1/A/2054:2056,1/A/2612:2615	NA	NA
76	IL_6GWT_076 ➜	1/A/2067:2069,1/A/2442:2443	NA	NA
77	IL_6GWT_077 ➜	1/A/2070:2071,1/A/2438:2441	NA	NA
78	IL_6GWT_078 ➜	1/A/2081:2083,1/A/2236:2239	NA	NA
79	IL_6GWT_079 ➜	1/A/2085:2087,1/A/2232:2234	NA	NA
80	IL_6GWT_080 ➜	1/A/2103:2105,1/A/2184:2186	NA	NA
81	IL_6GWT_081 ➜	1/A/2108:2121,1/A/2177:2181	NA	NA
82	IL_6GWT_082 ➜	1/A/2124:2128,1/A/2160:2174	NA	NA
83	IL_6GWT_083 ➜	1/A/2128:2137,1/A/2154:2160	NA	NA
84	IL_6GWT_084 ➜	1/A/2139:2141,1/A/2150:2152	NA	NA
85	IL_6GWT_085 ➜	1/A/2202:2204,1/A/2220:2221	NA	NA
86	IL_6GWT_086 ➜	1/A/2350:2353,1/A/2364:2367	NA	NA
87	IL_6GWT_087 ➜	1/A/2401:2403,1/A/2414:2415	NA	NA
88	IL_6GWT_088 ➜	1/A/2453:2454,1/A/2498:2500	NA	NA
89	IL_6GWT_089 ➜	1/A/2454:2455,1/A/2496:2498	NA	NA
90	IL_6GWT_090 ➜	1/A/2456:2459,1/A/2493:2495	NA	NA
91	IL_6GWT_091 ➜	1/A/2459:2461,1/A/2489:2493	NA	NA
92	IL_6GWT_092 ➜	1/A/2466:2470,1/A/2480:2484	NA	NA
93	IL_6GWT_093 ➜	1/A/2507:2509,1/A/2579:2582	NA	NA
94	IL_6GWT_094 ➜	1/A/2510:2512,1/A/2574:2578	NA	NA
95	IL_6GWT_095 ➜	1/A/2512:2513,1/A/2571:2574	NA	NA
96	IL_6GWT_096 ➜	1/A/2522:2523,1/A/2540:2543	NA	NA
97	IL_6GWT_097 ➜	1/A/2591:2592,1/A/2601:2603	NA	NA
98	IL_6GWT_098 ➜	1/A/2636:2640,1/A/2774:2782	NA	NA
99	IL_6GWT_099 ➜	1/A/2652:2658,1/A/2663:2668	NA	NA
100	IL_6GWT_100 ➜	1/A/2680:2684,1/A/2725:2727	NA	NA
101	IL_6GWT_101 ➜	1/A/2687:2691,1/A/2718:2722	NA	NA
102	IL_6GWT_102 ➜	1/A/2695:2696,1/A/2711:2714	NA	NA
103	IL_6GWT_103 ➜	1/A/2737:2742,1/A/2762:2767	NA	NA
104	IL_6GWT_104 ➜	1/A/2806:2811,1/A/2889:2892	NA	NA
105	IL_6GWT_105 ➜	1/A/2838:2839,1/A/2878:2880	NA	NA
106	IL_6GWT_106 ➜	1/A/2843:2846,1/A/2870:2874	NA	NA
107	IL_6GWT_107 ➜	1/A/2847:2852,1/A/2865:2869	NA	NA
108	IL_6GWT_108 ➜	1/B/17:18,1/B/65:67	NA	NA
109	IL_6GWT_109 ➜	1/B/22:28,1/B/56:61	NA	NA
110	IL_6GWT_110 ➜	1/B/30:31,1/B/51:54	NA	NA
111	IL_6GWT_111 ➜	1/B/34:38,1/B/44:48	NA	NA
112	IL_6GWT_112 ➜	1/B/71:79,1/B/97:105	NA	NA
113	IL_6GWT_113 ➜	1/a/30:32,1/a/552:553	NA	NA
114	IL_6GWT_114 ➜	1/a/44:45,1/a/396:398	NA	NA
115	IL_6GWT_115 ➜	1/a/47:52,1/a/359:361	NA	NA
116	IL_6GWT_116 ➜	1/a/54:56,1/a/356:357	NA	NA
117	IL_6GWT_117 ➜	1/a/63:66,1/a/103:104	NA	NA
118	IL_6GWT_118 ➜	1/a/67:69,1/a/99:102	NA	NA
119	IL_6GWT_119 ➜	1/a/70:73,1/a/97:98	NA	NA
120	IL_6GWT_120 ➜	1/a/75:77,1/a/92:95	NA	NA
121	IL_6GWT_121 ➜	1/a/128:131,1/a/231:233	NA	NA
122	IL_6GWT_122 ➜	1/a/132:136,1/a/227:230	NA	NA
123	IL_6GWT_123 ➜	1/a/144:146,1/a/176:178	NA	NA
124	IL_6GWT_124 ➜	1/a/147:153,1/a/168:175	NA	NA
125	IL_6GWT_125 ➜	1/a/203:206,1/a/213:214	NA	NA
126	IL_6GWT_126 ➜	1/a/242:247,1/a/277:284	NA	NA
127	IL_6GWT_127 ➜	1/a/249:252,1/a/274:275	NA	NA
128	IL_6GWT_128 ➜	1/a/292:293,1/a/304:308	NA	NA
129	IL_6GWT_129 ➜	1/a/367:369,1/a/392:393	NA	NA
130	IL_6GWT_130 ➜	1/a/371:375,1/a/389:390	NA	NA
131	IL_6GWT_131 ➜	1/a/375:376,1/a/387:389	NA	NA
132	IL_6GWT_132 ➜	1/a/409:416,1/a/427:433	NA	NA
133	IL_6GWT_133 ➜	1/a/440:442,1/a/492:497	NA	NA
134	IL_6GWT_134 ➜	1/a/446:450,1/a/483:488	NA	NA
135	IL_6GWT_135 ➜	1/a/450:455,1/a/477:483	NA	NA
136	IL_6GWT_136 ➜	1/a/504:511,1/a/540:541	NA	NA
137	IL_6GWT_137 ➜	1/a/515:521,1/a/528:536	NA	NA
138	IL_6GWT_138 ➜	1/a/569:575,1/a/880:881	NA	NA
139	IL_6GWT_139 ➜	1/a/580:584,1/a/757:761	NA	NA
140	IL_6GWT_140 ➜	1/a/594:596,1/a/644:645	NA	NA
141	IL_6GWT_141 ➜	1/a/597:598,1/a/640:643	NA	NA
142	IL_6GWT_142 ➜	1/a/605:612,1/a/628:633	NA	NA
143	IL_6GWT_143 ➜	1/a/654:655,1/a/751:754	NA	NA
144	IL_6GWT_144 ➜	1/a/658:660,1/a/745:748	NA	NA
145	IL_6GWT_145 ➜	1/a/662:666,1/a/740:743	NA	NA
146	IL_6GWT_146 ➜	1/a/673:678,1/a/712:717	NA	NA
147	IL_6GWT_147 ➜	1/a/683:688,1/a/699:707	NA	NA
148	IL_6GWT_148 ➜	1/a/774:778,1/a/804:805	NA	NA
149	IL_6GWT_149 ➜	1/a/779:783,1/a/799:803	NA	NA
150	IL_6GWT_150 ➜	1/a/887:894,1/a/905:910	NA	NA
151	IL_6GWT_151 ➜	1/a/922:923,1/a/1393:1395	NA	NA
152	IL_6GWT_152 ➜	1/a/925:927,1/a/1390:1391	NA	NA
153	IL_6GWT_153 ➜	1/a/933:935,1/a/1380:1384	NA	NA
154	IL_6GWT_154 ➜	1/a/953:954,1/a/1226:1228	NA	NA
155	IL_6GWT_155 ➜	1/a/993:997,1/a/1044:1045	NA	NA
156	IL_6GWT_156 ➜	1/a/998:999,1/a/1041:1043	NA	NA
157	IL_6GWT_157 ➜	1/a/1048:1050,1/a/1208:1209	NA	NA
158	IL_6GWT_158 ➜	1/a/1050:1056,1/a/1204:1208	NA	NA
159	IL_6GWT_159 ➜	1/a/1057:1058,1/a/1199:1203	NA	NA
160	IL_6GWT_160 ➜	1/a/1060:1061,1/a/1195:1197	NA	NA
161	IL_6GWT_161 ➜	1/a/1061:1063,1/a/1193:1195	NA	NA
162	IL_6GWT_162 ➜	1/a/1122:1128,1/a/1144:1151	NA	NA
163	IL_6GWT_163 ➜	1/a/1129:1132,1/a/1142:1143	NA	NA
164	IL_6GWT_164 ➜	1/a/1158:1161,1/a/1175:1181	NA	NA
165	IL_6GWT_165 ➜	1/a/1247:1253,1/a/1284:1290	NA	NA
166	IL_6GWT_166 ➜	1/a/1255:1258,1/a/1277:1282	NA	NA
167	IL_6GWT_167 ➜	1/a/1259:1263,1/a/1272:1276	NA	NA
168	IL_6GWT_168 ➜	1/a/1303:1308,1/a/1329:1334	NA	NA
169	IL_6GWT_169 ➜	1/a/1399:1401,1/a/1501:1504	NA	NA
170	IL_6GWT_170 ➜	1/a/1401:1404,1/a/1497:1501	NA	NA
171	IL_6GWT_171 ➜	1/a/1405:1407,1/a/1494:1496	NA	NA
172	IL_6GWT_172 ➜	1/a/1407:1409,1/a/1491:1494	NA	NA
173	IL_6GWT_173 ➜	1/a/1412:1414,1/a/1486:1488	NA	NA
174	IL_6GWT_174 ➜	1/a/1416:1419,1/a/1481:1484	NA	NA
175	IL_6GWT_175 ➜	1/a/1430:1435,1/a/1466:1470	NA	NA
176	IL_6GWT_176 ➜	1/a/1440:1442,1/a/1460:1461	NA	NA
177	IL_6GWT_177 ➜	1/a/1445:1448,1/a/1455:1457	NA	NA

Problematic loops

No problematic loops

Valid loops

#	loop id	location	annotation	motif
1	HL_6GWT_001 ➜	1/A/59:68	NA	NA
2	HL_6GWT_002 ➜	1/A/87:95	NA	NA
3	HL_6GWT_003 ➜	1/A/123:128	NA	NA
4	HL_6GWT_004 ➜	1/A/137:142	NA	NA
5	HL_6GWT_005 ➜	1/A/157:169	NA	NA
6	HL_6GWT_006 ➜	1/A/194:201	NA	NA
7	HL_6GWT_007 ➜	1/A/225:230	NA	NA
8	HL_6GWT_008 ➜	1/A/246:252	NA	NA
9	HL_6GWT_009 ➜	1/A/305:312	NA	NA
10	HL_6GWT_010 ➜	1/A/319:323	NA	NA
11	HL_6GWT_011 ➜	1/A/327:335	NA	NA
12	HL_6GWT_012 ➜	1/A/381:393	NA	NA
13	HL_6GWT_013 ➜	1/A/410:417	NA	NA
14	HL_6GWT_014 ➜	1/A/462:467	NA	NA
15	HL_6GWT_015 ➜	1/A/487:493	NA	NA
16	HL_6GWT_016 ➜	1/A/545:548	NA	NA
17	HL_6GWT_017 ➜	1/A/566:575	NA	NA
18	HL_6GWT_018 ➜	1/A/611:617	NA	NA
19	HL_6GWT_019 ➜	1/A/629:634	NA	NA
20	HL_6GWT_020 ➜	1/A/640:648	NA	NA
21	HL_6GWT_021 ➜	1/A/712:719	NA	NA
22	HL_6GWT_022 ➜	1/A/744:753	NA	NA
23	HL_6GWT_023 ➜	1/A/779:785	NA	NA
24	HL_6GWT_024 ➜	1/A/826:831	NA	NA
25	HL_6GWT_026 ➜	1/A/954:963	NA	NA
26	HL_6GWT_027 ➜	1/A/978:985	NA	NA
27	HL_6GWT_028 ➜	1/A/1092:1099	NA	NA
28	HL_6GWT_029 ➜	1/A/1167:1182	NA	NA
29	HL_6GWT_030 ➜	1/A/1222:1227	NA	NA
30	HL_6GWT_031 ➜	1/A/1281:1289	NA	NA
31	HL_6GWT_032 ➜	1/A/1324:1330	NA	NA
32	HL_6GWT_033 ➜	1/A/1363:1368	NA	NA
33	HL_6GWT_034 ➜	1/A/1389:1398	NA	NA
34	HL_6GWT_035 ➜	1/A/1450:1461	NA	NA
35	HL_6GWT_036 ➜	1/A/1492:1498	NA	NA
36	HL_6GWT_037 ➜	1/A/1531:1540	NA	NA
37	HL_6GWT_038 ➜	1/A/1565:1568	NA	NA
38	HL_6GWT_039 ➜	1/A/1612:1619	NA	NA
39	HL_6GWT_040 ➜	1/A/1629:1637	NA	NA
40	HL_6GWT_041 ➜	1/A/1691:1696	NA	NA
41	HL_6GWT_042 ➜	1/A/1727:1733	NA	NA
42	HL_6GWT_043 ➜	1/A/1752:1756	NA	NA
43	HL_6GWT_044 ➜	1/A/1777:1787	NA	NA
44	HL_6GWT_045 ➜	1/A/1806:1811	NA	NA
45	HL_6GWT_046 ➜	1/A/1868:1873	NA	NA
46	HL_6GWT_047 ➜	1/A/1910:1920	NA	NA
47	HL_6GWT_048 ➜	1/A/1949:1957	NA	NA
48	HL_6GWT_049 ➜	1/A/2027:2036	NA	NA
49	HL_6GWT_050 ➜	1/A/2142:2149	NA	NA
50	HL_6GWT_051 ➜	1/A/2209:2215	NA	NA
51	HL_6GWT_052 ➜	1/A/2248:2256	NA	NA
52	HL_6GWT_053 ➜	1/A/2264:2276	NA	NA
53	HL_6GWT_054 ➜	1/A/2303:2313	NA	NA
54	HL_6GWT_055 ➜	1/A/2324:2331	NA	NA
55	HL_6GWT_056 ➜	1/A/2356:2361	NA	NA
56	HL_6GWT_057 ➜	1/A/2374:2379	NA	NA
57	HL_6GWT_058 ➜	1/A/2404:2413	NA	NA
58	HL_6GWT_059 ➜	1/A/2471:2479	NA	NA
59	HL_6GWT_060 ➜	1/A/2528:2535	NA	NA
60	HL_6GWT_061 ➜	1/A/2551:2557	NA	NA
61	HL_6GWT_062 ➜	1/A/2594:2599	NA	NA
62	HL_6GWT_063 ➜	1/A/2658:2663	NA	NA
63	HL_6GWT_064 ➜	1/A/2701:2706	NA	NA
64	HL_6GWT_065 ➜	1/A/2745:2759	NA	NA
65	HL_6GWT_066 ➜	1/A/2795:2801	NA	NA
66	HL_6GWT_067 ➜	1/A/2819:2827	NA	NA
67	HL_6GWT_068 ➜	1/A/2856:2861	NA	NA
68	HL_6GWT_069 ➜	1/B/38:44	NA	NA
69	HL_6GWT_070 ➜	1/B/86:90	NA	NA
70	HL_6GWT_071 ➜	1/a/12:22	NA	NA
71	HL_6GWT_072 ➜	1/a/78:91	NA	NA
72	HL_6GWT_073 ➜	1/a/157:164	NA	NA
73	HL_6GWT_074 ➜	1/a/186:191	NA	NA
74	HL_6GWT_075 ➜	1/a/206:213	NA	NA
75	HL_6GWT_076 ➜	1/a/259:267	NA	NA
76	HL_6GWT_077 ➜	1/a/296:301	NA	NA
77	HL_6GWT_078 ➜	1/a/320:333	NA	NA
78	HL_6GWT_079 ➜	1/a/342:347	NA	NA
79	HL_6GWT_080 ➜	1/a/379:384	NA	NA
80	HL_6GWT_081 ➜	1/a/419:424	NA	NA
81	HL_6GWT_082 ➜	1/a/462:470	NA	NA
82	HL_6GWT_083 ➜	1/a/522:527	NA	NA
83	HL_6GWT_084 ➜	1/a/617:623	NA	NA
84	HL_6GWT_085 ➜	1/a/689:698	NA	NA
85	HL_6GWT_086 ➜	1/a/726:731	NA	NA
86	HL_6GWT_087 ➜	1/a/786:796	NA	NA
87	HL_6GWT_088 ➜	1/a/840:846	NA	NA
88	HL_6GWT_089 ➜	1/a/862:867	NA	NA
89	HL_6GWT_090 ➜	1/a/897:902	NA	NA
90	HL_6GWT_091 ➜	1/a/963:972	NA	NA
91	HL_6GWT_092 ➜	1/a/1012:1017	NA	NA
92	HL_6GWT_093 ➜	1/a/1028:1033	NA	NA
93	HL_6GWT_094 ➜	1/a/1076:1081	NA	NA
94	HL_6GWT_095 ➜	1/a/1089:1096	NA	NA
95	HL_6GWT_096 ➜	1/a/1133:1141	NA	NA
96	HL_6GWT_097 ➜	1/a/1165:1171	NA	NA
97	HL_6GWT_098 ➜	1/a/1265:1270	NA	NA
98	HL_6GWT_099 ➜	1/a/1314:1323	NA	NA
99	HL_6GWT_100 ➜	1/a/1356:1366	NA	NA
100	HL_6GWT_101 ➜	1/a/1449:1454	NA	NA
101	HL_6GWT_102 ➜	1/a/1515:1520	NA	NA
102	HL_6GWT_103 ➜	1/x/13:23	NA	NA
103	HL_6GWT_104 ➜	1/x/32:40	NA	NA
104	HL_6GWT_105 ➜	1/x/54:62	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_6GWT_025 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_6GWT_001 ➜	1/A/30:31,1/A/474:481,1/A/509:510	NA	NA
2	J3_6GWT_002 ➜	1/A/56:57,1/A/70:76,1/A/110:114	NA	NA
3	J3_6GWT_003 ➜	1/A/683:689,1/A/773:775,1/A/791:794	NA	NA
4	J3_6GWT_004 ➜	1/A/698:700,1/A/732:736,1/A/760:763	NA	NA
5	J3_6GWT_005 ➜	1/A/1298:1303,1/A/1625:1627,1/A/1639:1642	NA	NA
6	J3_6GWT_006 ➜	1/A/1306:1309,1/A/1605:1611,1/A/1620:1622	NA	NA
7	J3_6GWT_007 ➜	1/A/1344:1349,1/A/1382:1386,1/A/1401:1403	NA	NA
8	J3_6GWT_008 ➜	1/A/2091:2093,1/A/2196:2200,1/A/2223:2228	NA	NA
9	J3_6GWT_009 ➜	1/A/2295:2299,1/A/2317:2323,1/A/2332:2337	NA	NA
10	J3_6GWT_010 ➜	1/A/2517:2520,1/A/2545:2547,1/A/2561:2567	NA	NA
11	J3_6GWT_011 ➜	1/A/2789:2792,1/A/2804:2806,1/A/2892:2894	NA	NA
12	J3_6GWT_012 ➜	1/A/2812:2815,1/A/2831:2836,1/A/2882:2888	NA	NA
13	J3_6GWT_013 ➜	1/B/10:16,1/B/68:70,1/B/106:110	NA	NA
14	J3_6GWT_014 ➜	1/a/46:47,1/a/361:367,1/a/393:395	NA	NA
15	J3_6GWT_015 ➜	1/a/586:588,1/a/651:654,1/a/754:755	NA	NA
16	J3_6GWT_016 ➜	1/a/672:673,1/a/717:725,1/a/732:734	NA	NA
17	J3_6GWT_017 ➜	1/a/826:829,1/a/857:861,1/a/868:874	NA	NA
18	J3_6GWT_018 ➜	1/a/936:939,1/a/1344:1350,1/a/1372:1379	NA	NA
19	J3_6GWT_019 ➜	1/a/943:946,1/a/1235:1237,1/a/1337:1340	NA	NA
20	J3_6GWT_020 ➜	1/a/955:962,1/a/973:984,1/a/1221:1225	NA	NA
21	J3_6GWT_021 ➜	1/a/990:993,1/a/1045:1047,1/a/1210:1215	NA	NA
22	J3_6GWT_022 ➜	1/a/1003:1006,1/a/1023:1028,1/a/1033:1037	NA	NA
23	J3_6GWT_023 ➜	1/a/1063:1068,1/a/1107:1113,1/a/1187:1193	NA	NA
24	J3_6GWT_024 ➜	1/a/1073:1074,1/a/1083:1087,1/a/1098:1102	NA	NA
25	J3_6GWT_025 ➜	1/a/1116:1118,1/a/1155:1158,1/a/1181:1184	NA	NA
26	J3_6GWT_026 ➜	1/a/1237:1241,1/a/1296:1303,1/a/1334:1337	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers