Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6O9J_0011/A/38:44No text annotation
Not in a motif group
homologous
HL_4V9F_071
HL_87939.1
HL_6O9J_0021/A/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2
HL_6O9J_0031/B/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_6O9J_0041/B/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_6O9J_0051/B/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_6O9J_0061/B/137:142No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_6O9J_0071/B/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_6O9J_0081/B/194:201No text annotation
Not in a motif group
geometric
HL_4WF9_006
HL_06192.2
HL_6O9J_0091/B/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_6O9J_0101/B/246:252No text annotation
Not in a motif group
homologous
HL_4WF9_008
HL_67216.7
HL_6O9J_0111/B/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_6O9J_0121/B/319:323No text annotation
Not in a motif group
homologous
HL_7A0S_011
HL_75407.1
HL_6O9J_0131/B/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.8
HL_6O9J_0141/B/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_6O9J_0151/B/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_6O9J_0161/B/462:467GNRA
Not in a motif group
homologous
HL_5J7L_147
HL_42097.1
HL_6O9J_0171/B/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.1
HL_6O9J_0181/B/543:550No text annotation
Not in a motif group
homologous
HL_5J7L_149
HL_79531.1
HL_6O9J_0191/B/566:575T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5J7L_150
HL_89380.2
HL_6O9J_0201/B/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_6O9J_0211/B/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_6O9J_0221/B/641:647GNRA with one bulged base
Not in a motif group
homologous
HL_4WF9_021
HL_42097.1
HL_6O9J_0231/B/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_6O9J_0241/B/744:753No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_6O9J_0251/B/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_27930.1
HL_6O9J_0261/B/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_6O9J_0271/B/875:902No text annotation
Not in a motif group
HL_6O9J_0281/B/955:962GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_42097.1
HL_6O9J_0291/B/978:985No text annotation
Not in a motif group
homologous
HL_7A0S_027
HL_64430.2
HL_6O9J_0301/B/1064:1074No text annotation
Not in a motif group
homologous
HL_6PRV_001
HL_07145.1
HL_6O9J_0311/B/1092:1099No text annotation
Not in a motif group
homologous
HL_6PRV_002
HL_84085.2
HL_6O9J_0321/B/1172:1177No text annotation
Not in a motif group
geometric
HL_5TBW_012
HL_86373.2
HL_6O9J_0331/B/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_6O9J_0341/B/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_6O9J_0351/B/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_6O9J_0361/B/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_6O9J_0371/B/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_6O9J_0381/B/1449:1462No text annotation
Not in a motif group
HL_6O9J_0391/B/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_6O9J_0401/B/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_6O9J_0411/B/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_6O9J_0421/B/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_6O9J_0431/B/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_6O9J_0441/B/1691:1696UNCG
Not in a motif group
homologous
HL_5J7L_175
HL_03562.2
HL_6O9J_0451/B/1728:1731No text annotation
Not in a motif group
HL_6O9J_0461/B/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_6O9J_0471/B/1777:1787No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_6O9J_0481/B/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_6O9J_0491/B/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_42097.1
HL_6O9J_0501/B/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_6O9J_0511/B/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_6O9J_0521/B/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_6O9J_0531/B/2142:2149No text annotation
Not in a motif group
HL_6O9J_0541/B/2209:2215No text annotation
Not in a motif group
homologous
HL_4WF9_048
HL_16845.6
HL_6O9J_0551/B/2248:2256No text annotation
Not in a motif group
homologous
HL_5J7L_186
NA
HL_6O9J_0561/B/2264:2276No text annotation
Not in a motif group
homologous
HL_5J7L_187
HL_19870.6
HL_6O9J_0571/B/2303:2313No text annotation
Not in a motif group
homologous
HL_4WF9_051
NA
HL_6O9J_0581/B/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_6O9J_0591/B/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_6O9J_0601/B/2374:2379GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_42097.1
HL_6O9J_0611/B/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_30784.2
HL_6O9J_0621/B/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_6O9J_0631/B/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_6O9J_0641/B/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_6O9J_0651/B/2594:2599GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_42097.1
HL_6O9J_0661/B/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_42097.1
HL_6O9J_0671/B/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_6O9J_0681/B/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_6O9J_0691/B/2796:2800No text annotation
Not in a motif group
HL_6O9J_0701/B/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_6O9J_0711/B/2856:2861Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_42097.1
HL_6O9J_0721/a/12:22No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_6O9J_0731/a/83:86No text annotation
Not in a motif group
HL_6O9J_0741/a/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_6O9J_0751/a/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_6O9J_0761/a/207:212UNCG
Not in a motif group
homologous
HL_5J7L_005
HL_03562.2
HL_6O9J_0771/a/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_6O9J_0781/a/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_6O9J_0791/a/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_6O9J_0801/a/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_6O9J_0811/a/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_6O9J_0821/a/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_6O9J_0831/a/462:470No text annotation
Not in a motif group
HL_6O9J_0841/a/522:527No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_6O9J_0851/a/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_6O9J_0861/a/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_6O9J_0871/a/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_6O9J_0881/a/786:796No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_6O9J_0891/a/840:846No text annotation
Not in a motif group
HL_6O9J_0901/a/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_6O9J_0911/a/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_6O9J_0921/a/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_6O9J_0931/a/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_6O9J_0941/a/1028:1033No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_6O9J_0951/a/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_6O9J_0961/a/1089:1096No text annotation
Not in a motif group
homologous
HL_5J7L_024
HL_71554.2
HL_6O9J_0971/a/1134:1140No text annotation
Not in a motif group
homologous
HL_4LFB_026
HL_03562.2
HL_6O9J_0981/a/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_6O9J_0991/a/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_6O9J_1001/a/1314:1323No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_89380.2
HL_6O9J_1011/a/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_6O9J_1021/a/1449:1454UNCG
Not in a motif group
homologous
HL_4LFB_031
HL_03562.2
HL_6O9J_1031/a/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_6O9J_1041/v/13:22No text annotation
Not in a motif group
homologous
HL_6PMO_003
NA
HL_6O9J_1051/v/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4TUE_034
HL_53597.2
HL_6O9J_1061/v/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4YCO_003
HL_22280.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6O9J_0011/A/17:18,
1/A/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.2
IL_6O9J_0021/A/23:28,
1/A/56:60
No text annotation
Not in a motif group
homologous
IL_7A0S_103
IL_18472.2
IL_6O9J_0031/A/30:31,
1/A/51:54
Minor groove platform
Not in a motif group
homologous
IL_5TBW_374
IL_63797.2
IL_6O9J_0041/A/34:38,
1/A/44:48
Symmetric double minor groove platform
Not in a motif group
geometric
IL_5J7L_358
IL_58103.6
IL_6O9J_0051/A/71:79,
1/A/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3
IL_6O9J_0061/B/24:30,
1/B/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_5J7L_245
IL_66414.6
IL_6O9J_0071/B/36:37,
1/B/442:444
Single bulged A
Not in a motif group
homologous
IL_7A0S_002
IL_37497.2
IL_6O9J_0081/B/43:44,
1/B/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_6O9J_0091/B/81:85,
1/B/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_6O9J_0101/B/183:184,
1/B/212:214
Single stack bend
Not in a motif group
homologous
IL_5J7L_249
IL_76488.2
IL_6O9J_0111/B/188:194,
1/B/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_250
IL_04346.7
IL_6O9J_0121/B/239:245,
1/B/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_6O9J_0131/B/269:271,
1/B/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_6O9J_0141/B/274:281,
1/B/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_6O9J_0151/B/293:295,
1/B/343:347
No text annotation
Not in a motif group
homologous
IL_4WF9_014
IL_69440.1
IL_6O9J_0161/B/481:484,
1/B/496:509
No text annotation
Not in a motif group
homologous
IL_5J7L_255
IL_60992.6
IL_6O9J_0171/B/536:539,
1/B/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_6O9J_0181/B/564:566,
1/B/575:577
No text annotation
Not in a motif group
homologous
IL_4WF9_017
IL_95997.1
IL_6O9J_0191/B/606:610,
1/B/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_6O9J_0201/B/672:674,
1/B/806:808
No text annotation
Not in a motif group
geometric
IL_5J7L_259
IL_95997.1
IL_6O9J_0211/B/674:678,
1/B/799:806
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_5J7L_260
IL_17470.6
IL_6O9J_0221/B/697:698,
1/B/763:765
Single bulged A
Not in a motif group
homologous
IL_5J7L_261
IL_37497.2
IL_6O9J_0231/B/702:703,
1/B/728:730
Single bulged G
Not in a motif group
homologous
IL_5J7L_262
IL_00225.2
IL_6O9J_0241/B/703:707,
1/B/724:728
Triple sheared
Not in a motif group
geometric
IL_5J7L_263
IL_56467.8
IL_6O9J_0251/B/738:740,
1/B/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.1
IL_6O9J_0261/B/775:777,
1/B/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_265
IL_90991.6
IL_6O9J_0271/B/837:838,
1/B/940:942
Single stack bend
Not in a motif group
homologous
IL_4WF9_028
IL_92001.1
IL_6O9J_0281/B/844:848,
1/B/930:934
No text annotation
Not in a motif group
IL_6O9J_0291/B/850:851,
1/B/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_6O9J_0301/B/856:858,
1/B/919:921
No text annotation
Not in a motif group
geometric
IL_6CZR_171
IL_95997.1
IL_6O9J_0311/B/858:862,
1/B/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_4V9F_033
IL_38862.1
IL_6O9J_0321/B/862:863,
1/B/913:915
Single bulged G
Not in a motif group
homologous
IL_5J7L_271
IL_00225.2
IL_6O9J_0331/B/864:868,
1/B/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_6O9J_0341/B/870:872,
1/B/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_6O9J_0351/B/994:996,
1/B/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_6O9J_0361/B/998:1002,
1/B/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_4WF9_036
IL_89002.2
IL_6O9J_0371/B/1004:1011,
1/B/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5J7L_278
IL_15861.7
IL_6O9J_0381/B/1011:1013,
1/B/1149:1150
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.13
IL_6O9J_0391/B/1018:1024,
1/B/1140:1144
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_6O9J_0401/B/1024:1030,
1/B/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_6O9J_0411/B/1031:1034,
1/B/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_282
IL_82068.2
IL_6O9J_0421/B/1038:1041,
1/B/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_6O9J_0431/B/1043:1051,
1/B/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_6O9J_0441/B/1059:1062,
1/B/1076:1079
No text annotation
Not in a motif group
homologous
IL_6PRV_001
IL_23544.2
IL_6O9J_0451/B/1087:1090,
1/B/1101:1102
No text annotation
Not in a motif group
homologous
IL_6PRV_002
NA
IL_6O9J_0461/B/1196:1198,
1/B/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_5J7L_286
IL_52767.2
IL_6O9J_0471/B/1202:1206,
1/B/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_6O9J_0481/B/1208:1215,
1/B/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_6O9J_0491/B/1262:1269,
1/B/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_6O9J_0501/B/1310:1313,
1/B/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_6O9J_0511/B/1319:1323,
1/B/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_6O9J_0521/B/1351:1355,
1/B/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_6O9J_0531/B/1357:1361,
1/B/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_6O9J_0541/B/1415:1416,
1/B/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_6O9J_0551/B/1417:1421,
1/B/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_6O9J_0561/B/1432:1435,
1/B/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_6O9J_0571/B/1437:1440,
1/B/1551:1555
No text annotation
Not in a motif group
IL_6O9J_0581/B/1468:1471,
1/B/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_6O9J_0591/B/1474:1478,
1/B/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_6O9J_0601/B/1481:1482,
1/B/1507:1510
No text annotation
Not in a motif group
IL_6O9J_0611/B/1489:1491,
1/B/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_6O9J_0621/B/1526:1529,
1/B/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_6O9J_0631/B/1651:1656,
1/B/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_6O9J_0641/B/1663:1665,
1/B/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_6O9J_0651/B/1666:1669,
1/B/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_50694.2
IL_6O9J_0661/B/1669:1674,
1/B/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_5J7L_307
IL_82842.2
IL_6O9J_0671/B/1686:1691,
1/B/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_5J7L_308
IL_65969.2
IL_6O9J_0681/B/1712:1718,
1/B/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_6O9J_0691/B/1720:1724,
1/B/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_6O9J_0701/B/1727:1728,
1/B/1731:1733
Single bulged C
Not in a motif group
homologous
IL_5J7L_311
IL_61258.12
IL_6O9J_0711/B/1770:1771,
1/B/1980:1982
Single bulged A
Not in a motif group
homologous
IL_5J7L_312
IL_37497.2
IL_6O9J_0721/B/1798:1804,
1/B/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_6O9J_0731/B/1837:1840,
1/B/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_6O9J_0741/B/1841:1842,
1/B/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_6O9J_0751/B/1846:1849,
1/B/1893:1894
Minor groove platform
Not in a motif group
homologous
IL_7RQB_073
IL_88739.1
IL_6O9J_0761/B/1864:1867,
1/B/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_6O9J_0771/B/1933:1934,
1/B/1964:1967
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_318
IL_59677.2
IL_6O9J_0781/B/1934:1945,
1/B/1961:1964
No text annotation
Not in a motif group
geometric
IL_7A0S_072
IL_81589.2
IL_6O9J_0791/B/2050:2052,
1/B/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.1
IL_6O9J_0801/B/2054:2056,
1/B/2612:2615
No text annotation
Not in a motif group
IL_6O9J_0811/B/2067:2069,
1/B/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7A0S_075
IL_83039.13
IL_6O9J_0821/B/2070:2071,
1/B/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_5J7L_324
IL_42622.2
IL_6O9J_0831/B/2081:2083,
1/B/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_6O9J_0841/B/2085:2087,
1/B/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_6O9J_0851/B/2103:2105,
1/B/2184:2186
Stack and bulge
Not in a motif group
geometric
IL_2O3X_001
IL_82842.2
IL_6O9J_0861/B/2108:2110,
1/B/2179:2181
No text annotation
Not in a motif group
homologous
IL_3U4M_001
IL_95997.1
IL_6O9J_0871/B/2202:2204,
1/B/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_6O9J_0881/B/2350:2353,
1/B/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_6O9J_0891/B/2401:2403,
1/B/2414:2415
No text annotation
Not in a motif group
IL_6O9J_0901/B/2453:2454,
1/B/2498:2500
Single stack bend
Not in a motif group
homologous
IL_4WF9_089
IL_76488.2
IL_6O9J_0911/B/2454:2455,
1/B/2496:2498
Major groove platform
Not in a motif group
geometric
IL_7RQB_092
IL_27635.1
IL_6O9J_0921/B/2457:2459,
1/B/2493:2494
Major groove platform
Not in a motif group
homologous
IL_4WF9_091
IL_27635.1
IL_6O9J_0931/B/2459:2461,
1/B/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_5J7L_337
IL_92788.2
IL_6O9J_0941/B/2466:2470,
1/B/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_6O9J_0951/B/2507:2508,
1/B/2580:2582
Major groove platform
Not in a motif group
homologous
IL_4WF9_094
IL_76223.2
IL_6O9J_0961/B/2510:2512,
1/B/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_340
IL_90933.2
IL_6O9J_0971/B/2512:2513,
1/B/2571:2574
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_6O9J_0981/B/2522:2523,
1/B/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_6O9J_0991/B/2591:2592,
1/B/2601:2603
Single bulged A
Not in a motif group
homologous
IL_5J7L_344
IL_37497.2
IL_6O9J_1001/B/2636:2640,
1/B/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_6O9J_1011/B/2652:2658,
1/B/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_5J7L_346
IL_16458.1
IL_6O9J_1021/B/2680:2684,
1/B/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_6O9J_1031/B/2687:2691,
1/B/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_6O9J_1041/B/2695:2696,
1/B/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_6O9J_1051/B/2737:2742,
1/B/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_6O9J_1061/B/2806:2811,
1/B/2889:2892
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_49460.2
IL_6O9J_1071/B/2838:2839,
1/B/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_4WF9_106
IL_16396.2
IL_6O9J_1081/B/2843:2846,
1/B/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_6O9J_1091/B/2847:2852,
1/B/2865:2869
No text annotation
Not in a motif group
homologous
IL_7A0S_101
IL_83162.5
IL_6O9J_1101/a/30:32,
1/a/552:553
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_00225.2
IL_6O9J_1111/a/44:45,
1/a/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_6O9J_1121/a/47:52,
1/a/359:361
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_11178.1
IL_6O9J_1131/a/54:56,
1/a/356:357
Minor groove platform
Not in a motif group
homologous
IL_5J7L_004
IL_93353.1
IL_6O9J_1141/a/63:66,
1/a/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_6O9J_1151/a/67:69,
1/a/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_6O9J_1161/a/70:73,
1/a/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_6O9J_1171/a/75:76,
1/a/93:95
No text annotation
Not in a motif group
IL_6O9J_1181/a/128:131,
1/a/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_6O9J_1191/a/132:136,
1/a/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_6O9J_1201/a/144:146,
1/a/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_6O9J_1211/a/147:153,
1/a/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_6O9J_1221/a/203:206,
1/a/213:214
Minor groove platform
Not in a motif group
geometric
IL_3MXH_005
IL_15052.1
IL_6O9J_1231/a/242:247,
1/a/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_6O9J_1241/a/249:252,
1/a/274:275
No text annotation
Not in a motif group
homologous
IL_5J7L_015
IL_48100.2
IL_6O9J_1251/a/292:293,
1/a/304:308
C-loop
Not in a motif group
homologous
IL_6CZR_125
IL_37712.2
IL_6O9J_1261/a/367:369,
1/a/392:393
Single bulged U
Not in a motif group
geometric
IL_5J7L_017
IL_83039.13
IL_6O9J_1271/a/371:375,
1/a/389:390
C-loop
Not in a motif group
geometric
IL_4LFB_015
IL_75255.1
IL_6O9J_1281/a/375:376,
1/a/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.2
IL_6O9J_1291/a/409:416,
1/a/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_6O9J_1301/a/440:442,
1/a/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_6O9J_1311/a/446:450,
1/a/483:488
tSH-tHW-tWW
Not in a motif group
geometric
IL_5J7L_022
IL_88269.3
IL_6O9J_1321/a/450:454,
1/a/479:483
No text annotation
Not in a motif group
IL_6O9J_1331/a/454:455,
1/a/477:479
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_6O9J_1341/a/458:459,
1/a/472:474
Single stack bend
Not in a motif group
geometric
IL_4V83_236
IL_76488.2
IL_6O9J_1351/a/460:462,
1/a/470:471
Single bulged A
Not in a motif group
geometric
IL_5FJC_001
IL_37497.2
IL_6O9J_1361/a/504:511,
1/a/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_6O9J_1371/a/515:521,
1/a/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_6O9J_1381/a/569:575,
1/a/880:881
No text annotation
Not in a motif group
homologous
IL_5J7L_026
IL_69996.1
IL_6O9J_1391/a/580:584,
1/a/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_6O9J_1401/a/594:596,
1/a/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_6O9J_1411/a/597:598,
1/a/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_6O9J_1421/a/605:612,
1/a/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_6O9J_1431/a/654:655,
1/a/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_50694.2
IL_6O9J_1441/a/658:659,
1/a/746:748
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_6O9J_1451/a/662:666,
1/a/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_6O9J_1461/a/673:678,
1/a/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_6O9J_1471/a/684:688,
1/a/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_6O9J_1481/a/774:778,
1/a/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_6O9J_1491/a/779:783,
1/a/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_6O9J_1501/a/887:894,
1/a/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_6O9J_1511/a/922:923,
1/a/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.2
IL_6O9J_1521/a/925:927,
1/a/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_6O9J_1531/a/933:935,
1/a/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_6O9J_1541/a/953:954,
1/a/1226:1228
No text annotation
Not in a motif group
IL_6O9J_1551/a/993:997,
1/a/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_5J7L_043
IL_47078.1
IL_6O9J_1561/a/998:999,
1/a/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_6O9J_1571/a/1048:1050,
1/a/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_6O9J_1581/a/1052:1056,
1/a/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_6O9J_1591/a/1057:1058,
1/a/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_6O9J_1601/a/1060:1061,
1/a/1195:1197
Single bulged A
Not in a motif group
homologous
IL_5J7L_049
IL_37497.2
IL_6O9J_1611/a/1061:1063,
1/a/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_95997.1
IL_6O9J_1621/a/1124:1128,
1/a/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_6O9J_1631/a/1129:1132,
1/a/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_6O9J_1641/a/1158:1161,
1/a/1175:1181
No text annotation
Not in a motif group
homologous
IL_5J7L_053
IL_42032.1
IL_6O9J_1651/a/1247:1253,
1/a/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_6O9J_1661/a/1255:1258,
1/a/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_6O9J_1671/a/1259:1263,
1/a/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_6O9J_1681/a/1303:1308,
1/a/1329:1334
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_6O9J_1691/a/1399:1401,
1/a/1501:1504
No text annotation
Not in a motif group
geometric
IL_5J7L_058
IL_36143.3
IL_6O9J_1701/a/1401:1404,
1/a/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_6O9J_1711/a/1405:1407,
1/a/1494:1496
No text annotation
Not in a motif group
geometric
IL_5MWI_007
IL_95997.1
IL_6O9J_1721/a/1407:1410,
1/a/1490:1494
No text annotation
Not in a motif group
IL_6O9J_1731/a/1412:1414,
1/a/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_6O9J_1741/a/1416:1419,
1/a/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_6O9J_1751/a/1430:1435,
1/a/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_6O9J_1761/a/1440:1442,
1/a/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_6O9J_1771/a/1445:1448,
1/a/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6O9J_0011/A/10:16,
1/A/68:70,
1/A/106:110
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA
J3_6O9J_0021/B/30:31,
1/B/474:481,
1/B/509:510
No text annotation
Not in a motif group
J3_6O9J_0031/B/56:57,
1/B/70:76,
1/B/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_6O9J_0041/B/683:689,
1/B/773:775,
1/B/791:794
No text annotation
Not in a motif group
J3_6O9J_0051/B/698:700,
1/B/732:736,
1/B/760:763
No text annotation
Not in a motif group
J3_6O9J_0061/B/1055:1057,
1/B/1081:1087,
1/B/1102:1104
No text annotation
Not in a motif group
J3_6O9J_0071/B/1298:1303,
1/B/1625:1627,
1/B/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_6O9J_0081/B/1306:1309,
1/B/1605:1611,
1/B/1620:1622
No text annotation
Not in a motif group
homologous
J3_7RQB_008
NA
J3_6O9J_0091/B/2091:2093,
1/B/2196:2200,
1/B/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_6O9J_0101/B/2295:2299,
1/B/2317:2323,
1/B/2332:2337
No text annotation
Not in a motif group
J3_6O9J_0111/B/2517:2520,
1/B/2545:2547,
1/B/2561:2567
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_6O9J_0121/B/2789:2791,
1/B/2805:2806,
1/B/2892:2894
No text annotation
Not in a motif group
J3_6O9J_0131/B/2812:2815,
1/B/2831:2836,
1/B/2882:2888
No text annotation
Not in a motif group
homologous
J3_5J7L_048
NA
J3_6O9J_0141/a/46:47,
1/a/361:367,
1/a/393:395
No text annotation
Not in a motif group
J3_6O9J_0151/a/586:588,
1/a/651:654,
1/a/754:755
No text annotation
Not in a motif group
J3_6O9J_0161/a/672:673,
1/a/717:725,
1/a/732:734
No text annotation
Not in a motif group
J3_6O9J_0171/a/826:829,
1/a/857:861,
1/a/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_6O9J_0181/a/936:939,
1/a/1344:1350,
1/a/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_6O9J_0191/a/943:946,
1/a/1235:1237,
1/a/1337:1340
No text annotation
Not in a motif group
homologous
J3_5J7L_005
NA
J3_6O9J_0201/a/955:962,
1/a/973:984,
1/a/1221:1225
No text annotation
Not in a motif group
J3_6O9J_0211/a/990:993,
1/a/1045:1047,
1/a/1210:1215
No text annotation
Not in a motif group
J3_6O9J_0221/a/1003:1006,
1/a/1023:1027,
1/a/1034:1037
No text annotation
Not in a motif group
J3_6O9J_0231/a/1063:1068,
1/a/1107:1113,
1/a/1187:1193
No text annotation
Not in a motif group
J3_6O9J_0241/a/1073:1074,
1/a/1083:1087,
1/a/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_6O9J_0251/a/1116:1118,
1/a/1155:1158,
1/a/1181:1184
No text annotation
Not in a motif group
J3_6O9J_0261/a/1237:1241,
1/a/1296:1303,
1/a/1334:1337
No text annotation
Not in a motif group

Problematic loops

No problematic loops


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