6S13 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6S13_001 | 1/A/59:68 | No text annotation Not in a motif group | homologous HL_7A0S_001 HL_99167.1 | |
| HL_6S13_002 | 1/A/85:97 | No text annotation Not in a motif group | ||
| HL_6S13_003 | 1/A/122:127 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_6S13_004 | 1/A/136:143 | No text annotation Not in a motif group | homologous HL_4WF9_004 HL_84085.2 | |
| HL_6S13_005 | 1/A/157:171 | No text annotation Not in a motif group | ||
| HL_6S13_006 | 1/A/197:204 | No text annotation Not in a motif group | geometric HL_7RQB_006 HL_06192.2 | |
| HL_6S13_007 | 1/A/249:255 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_6S13_008 | 1/A/283:288 | No text annotation Not in a motif group | geometric HL_5FMZ_001 HL_27930.1 | |
| HL_6S13_009 | 1/A/348:355 | T-loop with 1 bulged base Not in a motif group | homologous HL_4WF9_010 HL_89380.2 | |
| HL_6S13_010 | 1/A/362:366 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_75407.1 | |
| HL_6S13_011 | 1/A/370:378 | No text annotation Not in a motif group | homologous HL_4WF9_012 HL_08002.8 | |
| HL_6S13_012 | 1/A/426:440 | No text annotation Not in a motif group | ||
| HL_6S13_013 | 1/A/456:463 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
| HL_6S13_014 | 1/A/508:513 | No text annotation Not in a motif group | homologous HL_7A0S_015 HL_42097.1 | |
| HL_6S13_015 | 1/A/533:538 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_6S13_016 | 1/A/587:594 | No text annotation Not in a motif group | homologous HL_4WF9_017 HL_50318.1 | |
| HL_6S13_017 | 1/A/609:618 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_4WF9_018 HL_89380.2 | |
| HL_6S13_018 | 1/A/655:661 | No text annotation Not in a motif group | geometric HL_3IGI_004 HL_30784.2 | |
| HL_6S13_019 | 1/A/674:679 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_6S13_020 | 1/A/685:693 | No text annotation Not in a motif group | ||
| HL_6S13_021 | 1/A/758:762 | No text annotation Not in a motif group | ||
| HL_6S13_022 | 1/A/789:798 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_6S13_023 | 1/A/824:830 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
| HL_6S13_024 | 1/A/871:876 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_64365.1 | |
| HL_6S13_025 | 1/A/925:942 | No text annotation Not in a motif group | ||
| HL_6S13_026 | 1/A/999:1006 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_6S13_027 | 1/A/1022:1029 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_6S13_028 | 1/A/1103:1123 | No text annotation Not in a motif group | ||
| HL_6S13_029 | 1/A/1214:1218 | No text annotation Not in a motif group | ||
| HL_6S13_030 | 1/A/1260:1265 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
| HL_6S13_031 | 1/A/1318:1326 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_032 HL_89380.2 | |
| HL_6S13_032 | 1/A/1361:1367 | No text annotation Not in a motif group | homologous HL_7A0S_033 HL_46680.1 | |
| HL_6S13_033 | 1/A/1400:1405 | No text annotation Not in a motif group | homologous HL_7A0S_034 HL_16173.1 | |
| HL_6S13_034 | 1/A/1426:1435 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_6S13_035 | 1/A/1494:1506 | No text annotation Not in a motif group | ||
| HL_6S13_036 | 1/A/1535:1541 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_6S13_037 | 1/A/1612:1615 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_6S13_038 | 1/A/1656:1663 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_6S13_039 | 1/A/1673:1681 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_6S13_040 | 1/A/1735:1740 | UNCG Not in a motif group | homologous HL_4WF9_040 HL_03562.2 | |
| HL_6S13_041 | 1/A/1760:1769 | No text annotation Not in a motif group | ||
| HL_6S13_042 | 1/A/1779:1783 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_6S13_043 | 1/A/1803:1815 | No text annotation Not in a motif group | homologous HL_7A0S_045 HL_43667.1 | |
| HL_6S13_044 | 1/A/1833:1838 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_6S13_045 | 1/A/1888:1908 | No text annotation Not in a motif group | ||
| HL_6S13_046 | 1/A/1937:1947 | No text annotation Not in a motif group | geometric HL_5AH5_007 HL_38927.2 | |
| HL_6S13_047 | 1/A/1976:1984 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_6S13_048 | 1/A/2054:2063 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_6S13_049 | 1/A/2169:2176 | No text annotation Not in a motif group | ||
| HL_6S13_050 | 1/A/2236:2242 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6S13_051 | 1/A/2275:2283 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_6S13_052 | 1/A/2291:2303 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_6S13_054 | 1/A/2350:2359 | No text annotation Not in a motif group | ||
| HL_6S13_055 | 1/A/2382:2389 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_6S13_056 | 1/A/2401:2406 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_6S13_057 | 1/A/2431:2440 | No text annotation Not in a motif group | homologous HL_4WF9_055 HL_30784.2 | |
| HL_6S13_058 | 1/A/2498:2506 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_6S13_059 | 1/A/2555:2562 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_6S13_060 | 1/A/2578:2584 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_6S13_061 | 1/A/2621:2626 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_6S13_062 | 1/A/2685:2690 | No text annotation Not in a motif group | ||
| HL_6S13_063 | 1/A/2728:2733 | Ribsomal LSU H95 Not in a motif group | homologous HL_7A0S_064 HL_46680.1 | |
| HL_6S13_064 | 1/A/2770:2788 | No text annotation Not in a motif group | ||
| HL_6S13_065 | 1/A/2818:2826 | No text annotation Not in a motif group | ||
| HL_6S13_066 | 1/A/2839:2847 | No text annotation Not in a motif group | homologous HL_4WF9_064 HL_27930.1 | |
| HL_6S13_067 | 1/A/2876:2881 | Other HL Not in a motif group | homologous HL_4WF9_065 HL_42097.1 | |
| HL_6S13_068 | 1/B/36:42 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_6S13_069 | 1/B/83:88 | No text annotation Not in a motif group | ||
| HL_6S13_070 | 1/a/12:24 | No text annotation Not in a motif group | ||
| HL_6S13_071 | 1/a/77:92 | No text annotation Not in a motif group | ||
| HL_6S13_072 | 1/a/158:163 | No text annotation Not in a motif group | ||
| HL_6S13_073 | 1/a/191:200 | No text annotation Not in a motif group | ||
| HL_6S13_074 | 1/a/213:226 | No text annotation Not in a motif group | ||
| HL_6S13_075 | 1/a/267:275 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6S13_076 | 1/a/303:310 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_86373.2 | |
| HL_6S13_077 | 1/a/328:341 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_6S13_078 | 1/a/350:355 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_03562.2 | |
| HL_6S13_079 | 1/a/386:393 | No text annotation Not in a motif group | ||
| HL_6S13_080 | 1/a/416:442 | No text annotation Not in a motif group | ||
| HL_6S13_081 | 1/a/470:479 | No text annotation Not in a motif group | ||
| HL_6S13_082 | 1/a/530:535 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_6S13_083 | 1/a/625:631 | GNRA Not in a motif group | geometric HL_1M5K_003 HL_53845.1 | |
| HL_6S13_084 | 1/a/696:707 | No text annotation Not in a motif group | ||
| HL_6S13_085 | 1/a/734:739 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_6S13_086 | 1/a/794:805 | No text annotation Not in a motif group | ||
| HL_6S13_087 | 1/a/849:854 | No text annotation Not in a motif group | ||
| HL_6S13_088 | 1/a/871:876 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_6S13_089 | 1/a/906:911 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6S13_090 | 1/a/972:981 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
| HL_6S13_091 | 1/a/1021:1026 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6S13_092 | 1/a/1038:1043 | No text annotation Not in a motif group | ||
| HL_6S13_093 | 1/a/1087:1092 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_6S13_094 | 1/a/1100:1107 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6S13_095 | 1/a/1144:1151 | No text annotation Not in a motif group | ||
| HL_6S13_096 | 1/a/1174:1182 | No text annotation Not in a motif group | ||
| HL_6S13_097 | 1/a/1269:1286 | No text annotation Not in a motif group | ||
| HL_6S13_098 | 1/a/1319:1338 | No text annotation Not in a motif group | ||
| HL_6S13_099 | 1/a/1366:1376 | No text annotation Not in a motif group | homologous HL_6CZR_101 HL_96366.1 | |
| HL_6S13_100 | 1/a/1454:1469 | No text annotation Not in a motif group | ||
| HL_6S13_101 | 1/a/1526:1531 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6S13_053 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6S13_001 | 1/A/24:30, 1/A/555:561 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7A0S_001 IL_66414.6 | |
| IL_6S13_002 | 1/A/36:37, 1/A/488:490 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_6S13_003 | 1/A/42:44, 1/A/480:483 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_003 IL_65006.1 | |
| IL_6S13_004 | 1/A/81:85, 1/A/97:104 | Kink-turn Not in a motif group | homologous IL_7A0S_004 IL_45067.2 | |
| IL_6S13_005 | 1/A/152:153, 1/A/175:177 | Major groove platform Not in a motif group | geometric IL_3NKB_002 IL_27635.1 | |
| IL_6S13_006 | 1/A/186:187, 1/A/215:217 | Single stack bend Not in a motif group | homologous IL_5J7L_249 IL_76488.2 | |
| IL_6S13_007 | 1/A/190:197, 1/A/204:212 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_008 IL_35728.2 | |
| IL_6S13_008 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_007 IL_04346.7 | |
| IL_6S13_009 | 1/A/305:307, 1/A/408:412 | No text annotation Not in a motif group | ||
| IL_6S13_010 | 1/A/527:530, 1/A/541:554 | No text annotation Not in a motif group | ||
| IL_6S13_011 | 1/A/581:584, 1/A/597:600 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_6S13_012 | 1/A/607:609, 1/A/618:620 | No text annotation Not in a motif group | homologous IL_4WF9_017 IL_95997.1 | |
| IL_6S13_013 | 1/A/638:640, 1/A/705:707 | No text annotation Not in a motif group | homologous IL_4WF9_018 IL_51629.2 | |
| IL_6S13_014 | 1/A/649:653, 1/A/663:667 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_6S13_015 | 1/A/717:719, 1/A/851:853 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_6S13_016 | 1/A/719:723, 1/A/844:851 | No text annotation Not in a motif group | geometric IL_7A0S_015 IL_17470.6 | |
| IL_6S13_017 | 1/A/742:743, 1/A/808:810 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.2 | |
| IL_6S13_018 | 1/A/747:748, 1/A/773:775 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_6S13_019 | 1/A/748:753, 1/A/768:773 | No text annotation Not in a motif group | ||
| IL_6S13_020 | 1/A/757:758, 1/A/762:764 | No text annotation Not in a motif group | ||
| IL_6S13_021 | 1/A/783:785, 1/A/802:803 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.1 | |
| IL_6S13_022 | 1/A/820:822, 1/A/832:836 | Multiple bulged bases Not in a motif group | geometric IL_4V9F_030 IL_90991.6 | |
| IL_6S13_023 | 1/A/881:883, 1/A/984:987 | No text annotation Not in a motif group | ||
| IL_6S13_024 | 1/A/889:893, 1/A/975:978 | No text annotation Not in a motif group | homologous IL_4WF9_029 IL_06300.1 | |
| IL_6S13_025 | 1/A/897:898, 1/A/969:971 | No text annotation Not in a motif group | ||
| IL_6S13_026 | 1/A/901:907, 1/A/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_4WF9_031 IL_93830.3 | |
| IL_6S13_027 | 1/A/907:908, 1/A/958:960 | Minor groove platform Not in a motif group | geometric IL_4V9F_034 IL_42622.2 | |
| IL_6S13_028 | 1/A/909:913, 1/A/954:957 | C-loop Not in a motif group | homologous IL_4WF9_033 IL_02509.1 | |
| IL_6S13_029 | 1/A/920:925, 1/A/942:947 | No text annotation Not in a motif group | ||
| IL_6S13_030 | 1/A/1038:1040, 1/A/1203:1204 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_6S13_031 | 1/A/1042:1046, 1/A/1197:1201 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
| IL_6S13_032 | 1/A/1048:1055, 1/A/1194:1195 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7A0S_034 IL_15861.7 | |
| IL_6S13_033 | 1/A/1055:1057, 1/A/1193:1194 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.13 | |
| IL_6S13_034 | 1/A/1062:1068, 1/A/1184:1188 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_6S13_035 | 1/A/1068:1074, 1/A/1168:1184 | No text annotation Not in a motif group | geometric IL_4WF9_040 IL_50715.1 | |
| IL_6S13_036 | 1/A/1074:1078, 1/A/1165:1168 | No text annotation Not in a motif group | ||
| IL_6S13_037 | 1/A/1081:1083, 1/A/1160:1162 | No text annotation Not in a motif group | homologous IL_4WF9_042 IL_95997.1 | |
| IL_6S13_038 | 1/A/1084:1095, 1/A/1152:1159 | No text annotation Not in a motif group | ||
| IL_6S13_039 | 1/A/1096:1098, 1/A/1149:1151 | No text annotation Not in a motif group | ||
| IL_6S13_040 | 1/A/1098:1100, 1/A/1148:1149 | No text annotation Not in a motif group | ||
| IL_6S13_041 | 1/A/1100:1101, 1/A/1125:1148 | No text annotation Not in a motif group | ||
| IL_6S13_042 | 1/A/1101:1103, 1/A/1123:1125 | No text annotation Not in a motif group | ||
| IL_6S13_043 | 1/A/1211:1214, 1/A/1218:1221 | No text annotation Not in a motif group | ||
| IL_6S13_044 | 1/A/1235:1237, 1/A/1285:1288 | Isolated cWS basepair Not in a motif group | homologous IL_7A0S_041 IL_52767.2 | |
| IL_6S13_045 | 1/A/1243:1245, 1/A/1277:1279 | Isolated cWH basepair Not in a motif group | homologous IL_4WF9_045 IL_51629.2 | |
| IL_6S13_046 | 1/A/1246:1253, 1/A/1272:1276 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_6S13_047 | 1/A/1257:1259, 1/A/1266:1268 | Intercalated cWW Not in a motif group | homologous IL_4WF9_047 IL_82842.2 | |
| IL_6S13_048 | 1/A/1300:1307, 1/A/2038:2044 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_048 IL_04346.7 | |
| IL_6S13_049 | 1/A/1356:1360, 1/A/1368:1370 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_6S13_050 | 1/A/1388:1392, 1/A/1413:1417 | UAA/GAN Not in a motif group | homologous IL_7A0S_048 IL_89002.2 | |
| IL_6S13_051 | 1/A/1394:1398, 1/A/1407:1411 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_6S13_052 | 1/A/1477:1480, 1/A/1604:1607 | No text annotation Not in a motif group | ||
| IL_6S13_053 | 1/A/1511:1518, 1/A/1562:1570 | No text annotation Not in a motif group | ||
| IL_6S13_054 | 1/A/1518:1523, 1/A/1557:1562 | No text annotation Not in a motif group | ||
| IL_6S13_055 | 1/A/1524:1526, 1/A/1549:1556 | No text annotation Not in a motif group | ||
| IL_6S13_056 | 1/A/1532:1534, 1/A/1542:1543 | No text annotation Not in a motif group | ||
| IL_6S13_057 | 1/A/1695:1700, 1/A/2031:2033 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_6S13_058 | 1/A/1707:1710, 1/A/2021:2024 | No text annotation Not in a motif group | ||
| IL_6S13_059 | 1/A/1710:1713, 1/A/2020:2021 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_6S13_060 | 1/A/1713:1718, 1/A/2017:2020 | Intercalated tWH Not in a motif group | homologous IL_5J7L_307 IL_82842.2 | |
| IL_6S13_061 | 1/A/1730:1735, 1/A/1740:1746 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_6S13_062 | 1/A/1755:1759, 1/A/1770:1774 | No text annotation Not in a motif group | ||
| IL_6S13_063 | 1/A/1797:1798, 1/A/2007:2009 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_6S13_064 | 1/A/1825:1831, 1/A/1840:1848 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_6S13_065 | 1/A/1864:1867, 1/A/1929:1930 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_6S13_066 | 1/A/1868:1870, 1/A/1924:1928 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_340 IL_90933.2 | |
| IL_6S13_067 | 1/A/1873:1876, 1/A/1920:1921 | No text annotation Not in a motif group | ||
| IL_6S13_068 | 1/A/1877:1882, 1/A/1914:1919 | No text annotation Not in a motif group | ||
| IL_6S13_069 | 1/A/1883:1888, 1/A/1908:1913 | No text annotation Not in a motif group | ||
| IL_6S13_070 | 1/A/1961:1972, 1/A/1988:1991 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_6S13_071 | 1/A/2077:2079, 1/A/2644:2645 | Major groove platform Not in a motif group | homologous IL_4WF9_078 IL_27635.1 | |
| IL_6S13_072 | 1/A/2081:2083, 1/A/2639:2642 | No text annotation Not in a motif group | homologous IL_4WF9_079 IL_54678.5 | |
| IL_6S13_073 | 1/A/2094:2096, 1/A/2469:2470 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_6S13_074 | 1/A/2097:2098, 1/A/2465:2468 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_6S13_075 | 1/A/2108:2110, 1/A/2263:2266 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_6S13_076 | 1/A/2123:2126, 1/A/2217:2220 | No text annotation Not in a motif group | ||
| IL_6S13_078 | 1/A/2151:2154, 1/A/2188:2201 | No text annotation Not in a motif group | ||
| IL_6S13_079 | 1/A/2156:2168, 1/A/2177:2186 | No text annotation Not in a motif group | ||
| IL_6S13_080 | 1/A/2229:2231, 1/A/2247:2248 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.2 | |
| IL_6S13_081 | 1/A/2324:2326, 1/A/2344:2348 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5TBW_095 IL_38958.7 | |
| IL_6S13_082 | 1/A/2377:2380, 1/A/2391:2394 | No text annotation Not in a motif group | ||
| IL_6S13_083 | 1/A/2428:2430, 1/A/2441:2442 | Single bulged U Not in a motif group | homologous IL_5J7L_334 IL_83039.13 | |
| IL_6S13_084 | 1/A/2481:2482, 1/A/2523:2525 | Major groove platform Not in a motif group | homologous IL_4WF9_090 IL_27635.1 | |
| IL_6S13_085 | 1/A/2484:2486, 1/A/2520:2521 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_6S13_086 | 1/A/2486:2488, 1/A/2516:2520 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_6S13_087 | 1/A/2493:2497, 1/A/2507:2511 | No text annotation Not in a motif group | ||
| IL_6S13_088 | 1/A/2534:2536, 1/A/2606:2609 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_6S13_089 | 1/A/2537:2539, 1/A/2601:2605 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4WF9_095 IL_90933.2 | |
| IL_6S13_090 | 1/A/2539:2540, 1/A/2598:2601 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_6S13_091 | 1/A/2548:2550, 1/A/2567:2571 | No text annotation Not in a motif group | ||
| IL_6S13_092 | 1/A/2618:2619, 1/A/2628:2630 | Major groove platform Not in a motif group | geometric IL_1G1X_002 IL_27635.1 | |
| IL_6S13_093 | 1/A/2663:2667, 1/A/2801:2809 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_6S13_094 | 1/A/2670:2672, 1/A/2797:2798 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6S13_095 | 1/A/2678:2685, 1/A/2690:2696 | No text annotation Not in a motif group | ||
| IL_6S13_096 | 1/A/2703:2704, 1/A/2757:2759 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6S13_097 | 1/A/2707:2711, 1/A/2752:2754 | C-loop Not in a motif group | homologous IL_4WF9_101 IL_63596.6 | |
| IL_6S13_098 | 1/A/2714:2718, 1/A/2745:2749 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_6S13_099 | 1/A/2722:2723, 1/A/2738:2741 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_6S13_100 | 1/A/2764:2770, 1/A/2788:2794 | No text annotation Not in a motif group | ||
| IL_6S13_101 | 1/A/2858:2859, 1/A/2898:2900 | Major groove intercalation Not in a motif group | homologous IL_4WF9_106 IL_16396.2 | |
| IL_6S13_102 | 1/A/2863:2865, 1/A/2891:2894 | No text annotation Not in a motif group | homologous IL_4WF9_107 IL_02284.5 | |
| IL_6S13_103 | 1/A/2867:2872, 1/A/2885:2889 | No text annotation Not in a motif group | homologous IL_4WF9_108 IL_83162.5 | |
| IL_6S13_104 | 1/B/3:5, 1/B/111:112 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6S13_105 | 1/B/5:8, 1/B/107:111 | No text annotation Not in a motif group | ||
| IL_6S13_106 | 1/B/15:16, 1/B/63:65 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_6S13_107 | 1/B/21:30, 1/B/48:58 | No text annotation Not in a motif group | ||
| IL_6S13_108 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform Not in a motif group | homologous IL_4V9F_104 IL_58103.6 | |
| IL_6S13_109 | 1/B/69:77, 1/B/94:102 | Bacterial 5S Loop E Not in a motif group | homologous IL_7A0S_106 IL_56455.3 | |
| IL_6S13_110 | 1/B/77:80, 1/B/91:94 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_7A0S_040 IL_30621.2 | |
| IL_6S13_111 | 1/a/31:33, 1/a/560:561 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_6S13_112 | 1/a/45:47, 1/a/403:406 | No text annotation Not in a motif group | ||
| IL_6S13_113 | 1/a/48:53, 1/a/367:369 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_6S13_114 | 1/a/64:67, 1/a/102:103 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_6S13_115 | 1/a/68:72, 1/a/97:101 | No text annotation Not in a motif group | ||
| IL_6S13_116 | 1/a/72:77, 1/a/92:97 | No text annotation Not in a motif group | ||
| IL_6S13_117 | 1/a/128:131, 1/a/239:240 | No text annotation Not in a motif group | ||
| IL_6S13_118 | 1/a/132:136, 1/a/235:238 | No text annotation Not in a motif group | ||
| IL_6S13_119 | 1/a/250:255, 1/a/285:292 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_6S13_120 | 1/a/257:261, 1/a/282:283 | No text annotation Not in a motif group | ||
| IL_6S13_121 | 1/a/261:263, 1/a/279:282 | No text annotation Not in a motif group | ||
| IL_6S13_122 | 1/a/300:303, 1/a/310:316 | No text annotation Not in a motif group | ||
| IL_6S13_123 | 1/a/375:377, 1/a/400:401 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_6S13_124 | 1/a/379:383, 1/a/397:398 | C-loop Not in a motif group | geometric IL_6CZR_127 IL_75255.1 | |
| IL_6S13_125 | 1/a/383:385, 1/a/394:397 | No text annotation Not in a motif group | ||
| IL_6S13_126 | 1/a/454:458, 1/a/491:496 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_6CZR_130 IL_88269.3 | |
| IL_6S13_127 | 1/a/510:512, 1/a/549:552 | No text annotation Not in a motif group | ||
| IL_6S13_128 | 1/a/512:519, 1/a/548:549 | No text annotation Not in a motif group | ||
| IL_6S13_129 | 1/a/523:529, 1/a/536:544 | No text annotation Not in a motif group | ||
| IL_6S13_130 | 1/a/577:583, 1/a/889:890 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
| IL_6S13_131 | 1/a/588:592, 1/a/765:769 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_135 IL_17136.1 | |
| IL_6S13_132 | 1/a/600:604, 1/a/652:655 | No text annotation Not in a motif group | ||
| IL_6S13_133 | 1/a/605:610, 1/a/644:651 | No text annotation Not in a motif group | ||
| IL_6S13_134 | 1/a/611:621, 1/a/635:643 | No text annotation Not in a motif group | ||
| IL_6S13_135 | 1/a/662:663, 1/a/759:762 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_6CZR_139 IL_50694.2 | |
| IL_6S13_136 | 1/a/664:667, 1/a/754:758 | No text annotation Not in a motif group | ||
| IL_6S13_137 | 1/a/669:675, 1/a/747:752 | No text annotation Not in a motif group | ||
| IL_6S13_138 | 1/a/681:686, 1/a/720:725 | No text annotation Not in a motif group | ||
| IL_6S13_139 | 1/a/690:696, 1/a/707:716 | No text annotation Not in a motif group | ||
| IL_6S13_140 | 1/a/781:787, 1/a/811:814 | No text annotation Not in a motif group | ||
| IL_6S13_141 | 1/a/787:791, 1/a/807:811 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_436 IL_17136.1 | |
| IL_6S13_142 | 1/a/791:794, 1/a/805:807 | No text annotation Not in a motif group | ||
| IL_6S13_143 | 1/a/931:936, 1/a/1400:1405 | No text annotation Not in a motif group | ||
| IL_6S13_144 | 1/a/958:963, 1/a/1236:1242 | No text annotation Not in a motif group | ||
| IL_6S13_145 | 1/a/994:996, 1/a/1228:1231 | No text annotation Not in a motif group | ||
| IL_6S13_146 | 1/a/1002:1008, 1/a/1052:1056 | No text annotation Not in a motif group | ||
| IL_6S13_147 | 1/a/1059:1061, 1/a/1218:1219 | No text annotation Not in a motif group | homologous IL_6CZR_152 NA | |
| IL_6S13_148 | 1/a/1061:1067, 1/a/1214:1218 | No text annotation Not in a motif group | ||
| IL_6S13_149 | 1/a/1068:1072, 1/a/1205:1213 | No text annotation Not in a motif group | ||
| IL_6S13_150 | 1/a/1125:1126, 1/a/1195:1197 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_6S13_151 | 1/a/1133:1143, 1/a/1152:1162 | No text annotation Not in a motif group | ||
| IL_6S13_152 | 1/a/1257:1264, 1/a/1294:1300 | No text annotation Not in a motif group | ||
| IL_6S13_153 | 1/a/1265:1268, 1/a/1287:1293 | No text annotation Not in a motif group | ||
| IL_6S13_154 | 1/a/1313:1319, 1/a/1338:1344 | No text annotation Not in a motif group | ||
| IL_6S13_155 | 1/a/1409:1411, 1/a/1512:1515 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_6S13_156 | 1/a/1411:1417, 1/a/1505:1512 | No text annotation Not in a motif group | ||
| IL_6S13_157 | 1/a/1417:1419, 1/a/1502:1505 | No text annotation Not in a motif group | ||
| IL_6S13_158 | 1/a/1422:1429, 1/a/1492:1499 | No text annotation Not in a motif group | ||
| IL_6S13_159 | 1/a/1434:1437, 1/a/1484:1487 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.2 | |
| IL_6S13_160 | 1/a/1440:1445, 1/a/1477:1481 | No text annotation Not in a motif group | ||
| IL_6S13_161 | 1/a/1445:1447, 1/a/1475:1477 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_6S13_162 | 1/a/1450:1454, 1/a/1469:1472 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6S13_077 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6S13_001 | 1/A/30:31, 1/A/520:527, 1/A/554:555 | No text annotation Not in a motif group | homologous J3_5J7L_036 NA | |
| J3_6S13_002 | 1/A/56:57, 1/A/70:76, 1/A/109:113 | No text annotation Not in a motif group | homologous J3_7A0S_002 NA | |
| J3_6S13_003 | 1/A/272:277, 1/A/294:303, 1/A/414:416 | No text annotation Not in a motif group | ||
| J3_6S13_004 | 1/A/728:734, 1/A/818:820, 1/A/836:839 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_6S13_005 | 1/A/743:745, 1/A/777:781, 1/A/805:808 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_6S13_006 | 1/A/1335:1340, 1/A/1669:1671, 1/A/1683:1686 | No text annotation Not in a motif group | homologous J3_4WF9_004 NA | |
| J3_6S13_007 | 1/A/1342:1346, 1/A/1649:1655, 1/A/1664:1667 | No text annotation Not in a motif group | homologous J3_4WF9_005 NA | |
| J3_6S13_008 | 1/A/2118:2120, 1/A/2223:2229, 1/A/2248:2255 | No text annotation Not in a motif group | ||
| J3_6S13_009 | 1/A/2322:2324, 1/A/2348:2350, 1/A/2359:2364 | No text annotation Not in a motif group | ||
| J3_6S13_010 | 1/A/2544:2547, 1/A/2572:2574, 1/A/2588:2594 | No text annotation Not in a motif group | homologous J3_4WF9_009 NA | |
| J3_6S13_011 | 1/A/2816:2818, 1/A/2826:2831, 1/A/2909:2913 | No text annotation Not in a motif group | ||
| J3_6S13_012 | 1/A/2833:2835, 1/A/2851:2856, 1/A/2902:2907 | No text annotation Not in a motif group | ||
| J3_6S13_013 | 1/B/9:14, 1/B/66:69, 1/B/102:106 | No text annotation Not in a motif group | ||
| J3_6S13_014 | 1/a/47:48, 1/a/369:375, 1/a/401:403 | No text annotation Not in a motif group | ||
| J3_6S13_015 | 1/a/594:596, 1/a/659:662, 1/a/762:763 | No text annotation Not in a motif group | ||
| J3_6S13_016 | 1/a/680:681, 1/a/725:733, 1/a/740:742 | No text annotation Not in a motif group | ||
| J3_6S13_017 | 1/a/834:837, 1/a/866:870, 1/a/877:883 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_6S13_018 | 1/a/952:956, 1/a/1244:1247, 1/a/1347:1350 | No text annotation Not in a motif group | ||
| J3_6S13_019 | 1/a/963:971, 1/a/982:994, 1/a/1231:1236 | No text annotation Not in a motif group | ||
| J3_6S13_020 | 1/a/998:1002, 1/a/1056:1058, 1/a/1220:1226 | No text annotation Not in a motif group | ||
| J3_6S13_021 | 1/a/1083:1086, 1/a/1093:1098, 1/a/1109:1114 | No text annotation Not in a motif group | ||
| J3_6S13_022 | 1/a/1247:1251, 1/a/1306:1313, 1/a/1344:1347 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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