7OHQ Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7OHQ_005 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_7OHQ_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_7OHQ_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_7OHQ_013 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_7OHQ_067 | 1/1/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_7OHQ_077 | 1/6/11:17 | No text annotation Not in a motif group | ||
| HL_7OHQ_078 | 1/6/37:42 | No text annotation Not in a motif group | geometric HL_4LFB_004 HL_10278.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7OHQ_001 | No text annotation | ||
| HL_7OHQ_002 | No text annotation | ||
| HL_7OHQ_003 | No text annotation | ||
| HL_7OHQ_004 | No text annotation | ||
| HL_7OHQ_008 | No text annotation | ||
| HL_7OHQ_009 | No text annotation | ||
| HL_7OHQ_010 | No text annotation | ||
| HL_7OHQ_011 | No text annotation | ||
| HL_7OHQ_012 | No text annotation | ||
| HL_7OHQ_014 | No text annotation | ||
| HL_7OHQ_015 | No text annotation | ||
| HL_7OHQ_016 | No text annotation | ||
| HL_7OHQ_017 | GNRA | ||
| HL_7OHQ_018 | No text annotation | ||
| HL_7OHQ_019 | GNRA | ||
| HL_7OHQ_020 | No text annotation | ||
| HL_7OHQ_021 | No text annotation | ||
| HL_7OHQ_022 | No text annotation | ||
| HL_7OHQ_023 | No text annotation | ||
| HL_7OHQ_024 | No text annotation | ||
| HL_7OHQ_025 | No text annotation | ||
| HL_7OHQ_026 | No text annotation | ||
| HL_7OHQ_027 | No text annotation | ||
| HL_7OHQ_028 | No text annotation | ||
| HL_7OHQ_029 | No text annotation | ||
| HL_7OHQ_030 | No text annotation | ||
| HL_7OHQ_031 | No text annotation | ||
| HL_7OHQ_032 | No text annotation | ||
| HL_7OHQ_033 | No text annotation | ||
| HL_7OHQ_034 | No text annotation | ||
| HL_7OHQ_035 | No text annotation | ||
| HL_7OHQ_036 | No text annotation | ||
| HL_7OHQ_037 | No text annotation | ||
| HL_7OHQ_038 | No text annotation | ||
| HL_7OHQ_039 | No text annotation | ||
| HL_7OHQ_040 | No text annotation | ||
| HL_7OHQ_041 | No text annotation | ||
| HL_7OHQ_042 | GNRA with one bulged base | ||
| HL_7OHQ_043 | No text annotation | ||
| HL_7OHQ_044 | No text annotation | ||
| HL_7OHQ_045 | No text annotation | ||
| HL_7OHQ_046 | No text annotation | ||
| HL_7OHQ_047 | No text annotation | ||
| HL_7OHQ_048 | Other HL | ||
| HL_7OHQ_049 | No text annotation | ||
| HL_7OHQ_050 | No text annotation | ||
| HL_7OHQ_051 | No text annotation | ||
| HL_7OHQ_052 | No text annotation | ||
| HL_7OHQ_053 | No text annotation | ||
| HL_7OHQ_054 | No text annotation | ||
| HL_7OHQ_055 | No text annotation | ||
| HL_7OHQ_056 | No text annotation | ||
| HL_7OHQ_057 | No text annotation | ||
| HL_7OHQ_058 | No text annotation | ||
| HL_7OHQ_059 | No text annotation | ||
| HL_7OHQ_060 | No text annotation | ||
| HL_7OHQ_061 | No text annotation | ||
| HL_7OHQ_062 | No text annotation | ||
| HL_7OHQ_063 | GNRA | ||
| HL_7OHQ_064 | GNRA | ||
| HL_7OHQ_065 | No text annotation | ||
| HL_7OHQ_066 | No text annotation | ||
| HL_7OHQ_068 | No text annotation | ||
| HL_7OHQ_069 | No text annotation | ||
| HL_7OHQ_070 | No text annotation | ||
| HL_7OHQ_071 | No text annotation | ||
| HL_7OHQ_072 | No text annotation | ||
| HL_7OHQ_073 | No text annotation | ||
| HL_7OHQ_074 | No text annotation | ||
| HL_7OHQ_075 | No text annotation | ||
| HL_7OHQ_076 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7OHQ_013 | 1/1/337:339, 1/2/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_7OHQ_014 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_7OHQ_015 | 1/1/404:410, 1/2/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_7OHQ_018 | 1/1/512:513, 1/1/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.2 | |
| IL_7OHQ_019 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_7OHQ_020 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_7OHQ_022 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_7OHQ_034 | 1/1/954:956, 1/1/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_7OHQ_035 | 1/1/969:970, 1/1/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_7OHQ_037 | 1/1/983:985, 1/1/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_7OHQ_039 | 1/1/1120:1125, 1/1/1133:1138 | Tandem non-canonical cWW pairs with near WC pairs Not in a motif group | geometric IL_4EYA_005 IL_04668.1 | |
| IL_7OHQ_040 | 1/1/1167:1171, 1/1/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_7OHQ_041 | 1/1/1173:1182, 1/1/1324:1326 | No text annotation Not in a motif group | geometric IL_1Z7F_002 IL_95997.1 | |
| IL_7OHQ_048 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_7OHQ_049 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_7OHQ_102 | 1/1/3164:3166, 1/1/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_7OHQ_104 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_7OHQ_105 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_7OHQ_106 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_7OHQ_127 | 1/6/26:27, 1/6/51:54 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_7OHQ_128 | 1/6/30:34, 1/6/45:48 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7OHQ_001 | No text annotation | ||
| IL_7OHQ_002 | No text annotation | ||
| IL_7OHQ_003 | No text annotation | ||
| IL_7OHQ_004 | No text annotation | ||
| IL_7OHQ_005 | No text annotation | ||
| IL_7OHQ_006 | No text annotation | ||
| IL_7OHQ_007 | No text annotation | ||
| IL_7OHQ_008 | Single stack bend | ||
| IL_7OHQ_009 | No text annotation | ||
| IL_7OHQ_010 | No text annotation | ||
| IL_7OHQ_011 | No text annotation | ||
| IL_7OHQ_012 | Isolated cWH basepair | ||
| IL_7OHQ_016 | No text annotation | ||
| IL_7OHQ_017 | No text annotation | ||
| IL_7OHQ_021 | No text annotation | ||
| IL_7OHQ_023 | No text annotation | ||
| IL_7OHQ_024 | No text annotation | ||
| IL_7OHQ_025 | No text annotation | ||
| IL_7OHQ_026 | No text annotation | ||
| IL_7OHQ_027 | No text annotation | ||
| IL_7OHQ_028 | No text annotation | ||
| IL_7OHQ_029 | Single bulged G | ||
| IL_7OHQ_030 | No text annotation | ||
| IL_7OHQ_031 | Major groove platform with extra cWW | ||
| IL_7OHQ_032 | Single bulged U | ||
| IL_7OHQ_033 | No text annotation | ||
| IL_7OHQ_036 | No text annotation | ||
| IL_7OHQ_038 | No text annotation | ||
| IL_7OHQ_042 | No text annotation | ||
| IL_7OHQ_043 | No text annotation | ||
| IL_7OHQ_044 | Single bulged U | ||
| IL_7OHQ_045 | No text annotation | ||
| IL_7OHQ_046 | No text annotation | ||
| IL_7OHQ_047 | Major groove platform with extra cWW | ||
| IL_7OHQ_050 | Kink-turn | ||
| IL_7OHQ_051 | Single bulged A | ||
| IL_7OHQ_052 | No text annotation | ||
| IL_7OHQ_053 | C-loop | ||
| IL_7OHQ_054 | No text annotation | ||
| IL_7OHQ_055 | No text annotation | ||
| IL_7OHQ_056 | Multiple bulged bases | ||
| IL_7OHQ_057 | No text annotation | ||
| IL_7OHQ_058 | Triple sheared | ||
| IL_7OHQ_059 | No text annotation | ||
| IL_7OHQ_060 | Single bulged C | ||
| IL_7OHQ_061 | Single stack bend | ||
| IL_7OHQ_062 | No text annotation | ||
| IL_7OHQ_063 | No text annotation | ||
| IL_7OHQ_064 | Kink-turn | ||
| IL_7OHQ_065 | No text annotation | ||
| IL_7OHQ_066 | No text annotation | ||
| IL_7OHQ_067 | No text annotation | ||
| IL_7OHQ_068 | Intercalated tWH | ||
| IL_7OHQ_069 | tSH-tSH-tHH-tHS | ||
| IL_7OHQ_070 | No text annotation | ||
| IL_7OHQ_071 | No text annotation | ||
| IL_7OHQ_072 | No text annotation | ||
| IL_7OHQ_073 | No text annotation | ||
| IL_7OHQ_074 | No text annotation | ||
| IL_7OHQ_075 | Major groove platform with extra pair | ||
| IL_7OHQ_076 | No text annotation | ||
| IL_7OHQ_077 | No text annotation | ||
| IL_7OHQ_078 | Major groove platform | ||
| IL_7OHQ_079 | No text annotation | ||
| IL_7OHQ_080 | Minor groove platform | ||
| IL_7OHQ_081 | No text annotation | ||
| IL_7OHQ_082 | No text annotation | ||
| IL_7OHQ_083 | Minor groove platform | ||
| IL_7OHQ_084 | UU cWW | ||
| IL_7OHQ_085 | Tandem non-canonical cWW pairs | ||
| IL_7OHQ_086 | Single stack bend | ||
| IL_7OHQ_087 | No text annotation | ||
| IL_7OHQ_088 | No text annotation | ||
| IL_7OHQ_089 | Triple sheared | ||
| IL_7OHQ_090 | No text annotation | ||
| IL_7OHQ_091 | CA cWW | ||
| IL_7OHQ_092 | Minor groove platform with intercalation | ||
| IL_7OHQ_093 | No text annotation | ||
| IL_7OHQ_094 | No text annotation | ||
| IL_7OHQ_095 | No text annotation | ||
| IL_7OHQ_096 | No text annotation | ||
| IL_7OHQ_097 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7OHQ_098 | No text annotation | ||
| IL_7OHQ_099 | No text annotation | ||
| IL_7OHQ_100 | No text annotation | ||
| IL_7OHQ_101 | No text annotation | ||
| IL_7OHQ_103 | No text annotation | ||
| IL_7OHQ_107 | No text annotation | ||
| IL_7OHQ_108 | No text annotation | ||
| IL_7OHQ_109 | Tandem non-canonical cWW pairs | ||
| IL_7OHQ_110 | Tandem non-canonical cWW pairs | ||
| IL_7OHQ_111 | Single bulged U | ||
| IL_7OHQ_112 | Single bulged U | ||
| IL_7OHQ_113 | No text annotation | ||
| IL_7OHQ_114 | No text annotation | ||
| IL_7OHQ_115 | Single bulged U | ||
| IL_7OHQ_116 | No text annotation | ||
| IL_7OHQ_117 | Multiple bulged bases | ||
| IL_7OHQ_118 | Isolated non-canonical cWW with bulges | ||
| IL_7OHQ_119 | Single bulged U | ||
| IL_7OHQ_120 | Single bulged A | ||
| IL_7OHQ_121 | No text annotation | ||
| IL_7OHQ_122 | Minor groove platform | ||
| IL_7OHQ_123 | Single stack bend | ||
| IL_7OHQ_124 | Symmetric double minor groove platform | ||
| IL_7OHQ_125 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7OHQ_126 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7OHQ_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7OHQ_001 | No text annotation | ||
| J3_7OHQ_002 | No text annotation | ||
| J3_7OHQ_004 | No text annotation | ||
| J3_7OHQ_005 | No text annotation | ||
| J3_7OHQ_006 | No text annotation | ||
| J3_7OHQ_007 | No text annotation | ||
| J3_7OHQ_008 | No text annotation | ||
| J3_7OHQ_009 | No text annotation | ||
| J3_7OHQ_010 | No text annotation | ||
| J3_7OHQ_011 | No text annotation | ||
| J3_7OHQ_012 | No text annotation | ||
| J3_7OHQ_013 | No text annotation | ||
| J3_7OHQ_014 | No text annotation | ||
| J3_7OHQ_015 | No text annotation | ||
| J3_7OHQ_016 | No text annotation | ||
| J3_7OHQ_017 | No text annotation |
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