Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/1/67:74
geometric
HL_4WF9_001
NA

HL_86769.2*
1/1/87:95
homologous
HL_7RQB_002
NA

HL_17926.5*
1/1/122:127
homologous
HL_7RQB_003
NA

HL_62869.3*
1/1/136:143
geometric
HL_5AOX_001
NA

HL_93727.5*
1/1/158:170NANA
1/1/197:204
geometric
HL_4V9F_006
NA

HL_23481.5*
1/1/228:233
homologous
HL_7RQB_007
NA

HL_06569.2*
1/1/249:255
homologous
HL_7RQB_008
NA

HL_67216.5*
1/1/348:355
homologous
HL_7RQB_010
NA

HL_68493.6*
1/1/362:366
homologous
HL_7RQB_011
NA

HL_98557.5*
1/1/370:378
homologous
HL_7RQB_012
NA

HL_08002.6*
1/1/427:439NANA
1/1/456:463
homologous
HL_7RQB_014
NA

HL_32512.8*
1/1/508:513
homologous
HL_7RQB_015
NA

HL_43074.18*
1/1/533:538
homologous
HL_7RQB_016
NA

HL_43074.18*
1/1/587:594
geometric
HL_4WF9_017
NA

HL_23219.1*
1/1/609:618
homologous
HL_7RQB_018
NA

HL_33239.17*
1/1/655:661NANA
1/1/674:679
homologous
HL_7RQB_020
NA

HL_43074.18*
1/1/686:692
homologous
HL_7RQB_021
NA

HL_02361.6*
1/1/757:764NANA
1/1/789:798
homologous
HL_7RQB_023
NA

HL_39334.5*
1/1/823:831
geometric
HL_5TBW_021
NA

HL_05832.1*
1/1/871:876
homologous
HL_7RQB_025
NA

HL_15942.5*
1/1/999:1006
homologous
HL_7RQB_027
NA

HL_43074.18*
1/1/1022:1029
homologous
HL_7RQB_028
NA

HL_72451.5*
1/1/1213:1219NANA
1/1/1260:1265
homologous
HL_7RQB_032
NA

HL_43074.18*
1/1/1318:1326
homologous
HL_7RQB_033
NA

HL_33239.17*
1/1/1361:1367
homologous
HL_7RQB_034
NA

HL_86880.5*
1/1/1400:1405
homologous
HL_7RQB_035
NA

HL_43074.18*
1/1/1426:1435
homologous
HL_7RQB_036
NA

HL_78457.4*
1/1/1492:1506NANA
1/1/1612:1615
homologous
HL_7RQB_039
NA

HL_69353.7*
1/1/1656:1663
homologous
HL_7RQB_040
NA

HL_66171.3*
1/1/1673:1681
geometric
HL_4WF9_039
NA

HL_42733.4*
1/1/1735:1740UNCG
geometric
HL_4V9F_044
NA

HL_79299.11*
1/1/1779:1783
homologous
HL_7RQB_044
NA

HL_79272.3*
1/1/1804:1814
homologous
HL_7RQB_045
NA

HL_43613.4*
1/1/1833:1838
geometric
HL_5J7L_179
NA

HL_32527.3*
1/1/1937:1947NANA
1/1/1976:1984
homologous
HL_7RQB_049
NA

HL_53760.4*
1/1/2054:2063
homologous
HL_7RQB_050
NA

HL_90642.5*
1/1/2236:2242NANA
1/1/2275:2283
homologous
HL_7RQB_053
NA
1/1/2291:2303
homologous
HL_7RQB_054
NA

HL_19870.5*
1/1/2351:2358
homologous
HL_7RQB_056
NA

HL_46142.8*
1/1/2382:2389
homologous
HL_7RQB_057
NA

HL_93727.5*
1/1/2401:2406
homologous
HL_7RQB_058
NA

HL_43074.18*
1/1/2431:2440
homologous
HL_7RQB_059
NA

HL_48376.4*
1/1/2498:2506
homologous
HL_7RQB_060
NA

HL_36421.5*
1/1/2555:2562
homologous
HL_7RQB_061
NA

HL_92681.5*
1/1/2578:2584
geometric
HL_4WF9_058
NA

HL_26055.6*
1/1/2621:2626
homologous
HL_7RQB_063
NA

HL_43074.18*
1/1/2685:2690
homologous
HL_7RQB_064
NA

HL_43074.18*
1/1/2728:2733Ribsomal LSU H95
geometric
HL_5J7L_198
NA

HL_67719.1*
1/1/2772:2786
homologous
HL_7RQB_066
NA

HL_56677.5*
1/1/2819:2824
geometric
HL_1WZ2_007
NA

HL_05692.1*
1/1/2839:2847
homologous
HL_7RQB_068
NA

HL_05018.6*
1/1/2876:2881
homologous
HL_7RQB_069
NA

HL_43074.18*
1/2/36:42NANA
1/2/77:92NANA

Problematic loops

#loop idProblemSequence
HL_6WRU_009NA
HL_6WRU_026NA
HL_6WRU_029NA
HL_6WRU_037NA
HL_6WRU_038NA
HL_6WRU_043NA
HL_6WRU_047NA
HL_6WRU_051NA
HL_6WRU_055NA

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/1/24:30,
1/1/555:561
Triple sheared with non-canonical cWW
geometric
IL_4WF9_001
NA

IL_66414.5*
1/1/36:37,
1/1/488:490
Single bulged A
homologous
IL_7RQB_002
NA

IL_80007.16*
1/1/42:44,
1/1/480:483
Minor groove platform with extra cWW
geometric
IL_4WF9_003
NA

IL_87332.1*
1/1/81:85,
1/1/97:104
Kink-turn
homologous
IL_7RQB_004
NA

IL_29549.9*
1/1/152:153,
1/1/175:177
Single bulged A
geometric
IL_4WF9_006
NA

IL_80007.16*
1/1/186:187,
1/1/215:217
Single stack bend
homologous
IL_7RQB_005
NA

IL_04038.4*
1/1/190:197,
1/1/204:212
9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
NA

IL_61812.1*
1/1/241:248,
1/1/256:262
8x7 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_009
NA

IL_04346.5*
1/1/305:307,
1/1/408:412
NANA
1/1/328:333,
1/1/393:399
NANA
1/1/336:338,
1/1/386:390

homologous
IL_7RQB_013
NA

IL_69440.1*
1/1/527:530,
1/1/541:554

geometric
IL_4WF9_015
NA

IL_60992.5*
1/1/581:584,
1/1/597:600
Double sheared
geometric
IL_4WF9_016
NA

IL_09705.7*
1/1/607:609,
1/1/618:620

geometric
IL_4WF9_017
NA

IL_01312.13*
1/1/638:640,
1/1/705:707

geometric
IL_4WF9_018
NA

IL_01312.13*
1/1/649:653,
1/1/663:667
AAA cross-strand stack
homologous
IL_7RQB_016
NA

IL_56467.6*
1/1/717:719,
1/1/851:853

geometric
IL_7RQB_017
NA

IL_01312.13*
1/1/719:723,
1/1/844:851

homologous
IL_7RQB_018
NA

IL_17470.5*
1/1/742:743,
1/1/808:810
Single bulged A
geometric
IL_5J7L_261
NA

IL_80007.16*
1/1/747:748,
1/1/773:775
Single bulged G
geometric
IL_4V9F_026
NA

IL_59137.10*
1/1/748:752,
1/1/769:773
Triple sheared
homologous
IL_7RQB_021
NA

IL_56467.6*
1/1/783:785,
1/1/802:803
Major groove platform
geometric
IL_4WF9_026
NA

IL_80663.10*
1/1/820:822,
1/1/832:836
Multiple bulged bases
geometric
IL_7RQB_023
NA

IL_90991.5*
1/1/882:883,
1/1/984:986
Single stack bend
homologous
IL_7RQB_024
NA

IL_04038.4*
1/1/889:893,
1/1/975:978

geometric
IL_4WF9_029
NA

IL_06300.1*
1/1/894:896,
1/1/972:974

geometric
IL_4WF9_020
NA

IL_01312.13*
1/1/897:898,
1/1/969:971
NANA
1/1/901:907,
1/1/960:966
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_4WF9_031
NA

IL_93830.2*
1/1/907:908,
1/1/958:960
Minor groove platform
homologous
IL_7RQB_028
NA

IL_06437.11*
1/1/909:913,
1/1/954:957
C-loop
homologous
IL_7RQB_029
NA

IL_63596.4*
1/1/915:917,
1/1/950:952
Isolated cWS basepair
homologous
IL_7RQB_030
NA

IL_67621.5*
1/1/1038:1040,
1/1/1203:1204
Single bulged C
homologous
IL_7RQB_035
NA

IL_61258.10*
1/1/1042:1046,
1/1/1197:1201
UAA/GAN
homologous
IL_7RQB_036
NA

IL_53523.5*
1/1/1048:1055,
1/1/1194:1195
SSU/LSU pseudoknot
homologous
IL_7RQB_037
NA

IL_15861.6*
1/1/1055:1057,
1/1/1193:1194
Single bulged U
geometric
IL_5J7L_279
NA

IL_83039.11*
1/1/1062:1068,
1/1/1184:1188

geometric
IL_4WF9_039
NA

IL_57188.3*
1/1/1068:1074,
1/1/1168:1184

geometric
IL_4WF9_040
NA

IL_22615.1*
1/1/1075:1078,
1/1/1165:1167
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_041
NA

IL_55456.1*
1/1/1081:1083,
1/1/1160:1162

geometric
IL_5Y7M_007
NA

IL_01312.13*
1/1/1235:1237,
1/1/1285:1288
Isolated cWS basepair
homologous
IL_7RQB_045
NA

IL_67621.5*
1/1/1243:1245,
1/1/1277:1279
Isolated cWH basepair
geometric
IL_4WF9_045
NA

IL_42589.6*
1/1/1246:1253,
1/1/1272:1276
Kink-turn
homologous
IL_7RQB_047
NA

IL_29549.9*
1/1/1257:1259,
1/1/1266:1268
Intercalated cWW
geometric
IL_4WF9_047
NA

IL_04038.4*
1/1/1300:1307,
1/1/2038:2044
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA

IL_04346.5*
1/1/1356:1360,
1/1/1368:1370
C-loop
homologous
IL_7RQB_051
NA

IL_63596.4*
1/1/1388:1392,
1/1/1413:1417
UAA/GAN
geometric
IL_5J7L_292
NA

IL_34907.2*
1/1/1394:1398,
1/1/1407:1411
tSH-tHW-tHS
homologous
IL_7RQB_053
NA

IL_39521.5*
1/1/1461:1465,
1/1/1624:1627
Other IL
geometric
IL_4WF9_054
NA

IL_09705.7*
1/1/1476:1480,
1/1/1604:1608
NANA
1/1/1481:1485,
1/1/1598:1603
NANA
1/1/1490:1492,
1/1/1506:1508

geometric
IL_3LA5_001
NA

IL_01312.13*
1/1/1511:1516,
1/1/1564:1570

geometric
IL_4WF9_058
NA

IL_94518.4*
1/1/1517:1523,
1/1/1557:1563
NANA
1/1/1695:1700,
1/1/2031:2033

homologous
IL_7RQB_064
NA

IL_12566.2*
1/1/1707:1709,
1/1/2022:2024
Isolated tWW turn
homologous
IL_7RQB_065
NA

IL_54997.5*
1/1/1710:1713,
1/1/2020:2021
Major groove platform; stack outside cWW
homologous
IL_7RQB_066
NA

IL_80663.10*
1/1/1713:1718,
1/1/2017:2020
Intercalated tWH
geometric
IL_4WF9_065
NA

IL_01312.13*
1/1/1730:1735,
1/1/1740:1746
tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA

IL_66584.5*
1/1/1755:1761,
1/1/1768:1774
NANA
1/1/1797:1798,
1/1/2007:2009
Single bulged A
homologous
IL_7RQB_069
NA

IL_80007.16*
1/1/1825:1831,
1/1/1840:1848
Kink-turn related
homologous
IL_7RQB_070
NA

IL_17069.3*
1/1/1864:1867,
1/1/1929:1930
Major groove outside cWW, minor groove, intercalation pocket
geometric
IL_4V9F_066
NA

IL_31836.1*
1/1/1867:1869,
1/1/1925:1929
NANA
1/1/1873:1876,
1/1/1920:1921
Major groove minor groove platform; mini C-loop
geometric
IL_7RQB_113
NA

IL_09061.4*
1/1/1878:1882,
1/1/1914:1918
UAA/GAN with extra pair
homologous
IL_7RQB_074
NA

IL_34907.2*
1/1/1883:1887,
1/1/1909:1913
Triple sheared
homologous
IL_7RQB_075
NA

IL_56467.6*
1/1/1891:1894,
1/1/1901:1905
UAA/GAN related
geometric
IL_5J7L_317
NA

IL_81389.2*
1/1/1960:1961,
1/1/1991:1994
Multiple bulged bases
geometric
IL_5J7L_318
NA

IL_69632.1*
1/1/1961:1972,
1/1/1988:1991

geometric
IL_7A0S_072
NA

IL_07097.1*
1/1/2077:2079,
1/1/2644:2645
Major groove platform
homologous
IL_7RQB_078
NA

IL_80663.10*
1/1/2081:2084,
1/1/2638:2642

homologous
IL_7RQB_079
NA

IL_01206.1*
1/1/2094:2096,
1/1/2469:2470
Single bulged U
homologous
IL_7RQB_080
NA

IL_83039.11*
1/1/2097:2098,
1/1/2465:2468
Minor groove platform
homologous
IL_7RQB_081
NA

IL_06437.11*
1/1/2108:2110,
1/1/2263:2266
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA

IL_38958.6*
1/1/2229:2231,
1/1/2247:2248
Single bulged G
geometric
IL_3NDB_004
NA

IL_59137.10*
1/1/2324:2326,
1/1/2344:2348
Isolated tHS basepair with bulges
geometric
IL_4WF9_086
NA

IL_38958.6*
1/1/2377:2380,
1/1/2391:2394
Double sheared
homologous
IL_7RQB_089
NA

IL_09705.7*
1/1/2428:2430,
1/1/2441:2442
Single bulged U
geometric
IL_4KZD_001
NA

IL_83039.11*
1/1/2480:2481,
1/1/2525:2527
Single stack bend
homologous
IL_7RQB_091
NA

IL_04038.4*
1/1/2481:2482,
1/1/2523:2525
Major groove platform
geometric
IL_4V9F_082
NA

IL_80663.10*
1/1/2484:2486,
1/1/2520:2521
Major groove platform
geometric
IL_7A0S_085
NA

IL_80663.10*
1/1/2486:2488,
1/1/2516:2520
Major groove minor groove platform with extra cWW
geometric
IL_7RQB_094
NA

IL_96042.4*
1/1/2493:2497,
1/1/2507:2511
Triple sheared
homologous
IL_7RQB_095
NA

IL_56467.6*
1/1/2534:2536,
1/1/2606:2609
Isolated non-canonical cWW with bulges
geometric
IL_5ML7_010
NA

IL_01312.13*
1/1/2537:2539,
1/1/2601:2605
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA

IL_01312.13*
1/1/2539:2540,
1/1/2598:2601

geometric
IL_4WF9_096
NA

IL_69632.1*
1/1/2549:2550,
1/1/2567:2570
Minor groove platform with intercalation
homologous
IL_7RQB_099
NA

IL_95601.1*
1/1/2618:2619,
1/1/2628:2630
NANA
1/1/2663:2667,
1/1/2801:2809
tSH-tHS-tHW
homologous
IL_7RQB_102
NA

IL_34907.2*
1/1/2679:2685,
1/1/2690:2695
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7A0S_094
NA

IL_35110.5*
1/1/2707:2711,
1/1/2752:2754
C-loop
homologous
IL_7RQB_104
NA

IL_63596.4*
1/1/2714:2718,
1/1/2745:2749

homologous
IL_7RQB_105
NA

IL_08296.3*
1/1/2722:2723,
1/1/2738:2741
Multiple bulged bases
homologous
IL_7RQB_106
NA

IL_77034.1*
1/1/2764:2769,
1/1/2789:2794
UAA/GAN with extra cWW
homologous
IL_7RQB_107
NA

IL_49767.4*
1/1/2857:2859,
1/1/2898:2901

geometric
IL_7A0S_092
NA

IL_01312.13*
1/1/2863:2865,
1/1/2891:2894

geometric
IL_4WF9_107
NA

IL_02284.3*
1/1/2867:2872,
1/1/2885:2889

homologous
IL_7RQB_110
NA

IL_83162.3*
1/2/15:16,
1/2/63:65
NANA
1/2/21:27,
1/2/53:58
NANA
1/2/27:29,
1/2/49:53
NANA
1/2/32:36,
1/2/42:46
NANA

Problematic loops

#loop idProblemSequence
IL_6WRU_098NA

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/1/30:31,
1/1/520:527,
1/1/554:555

homologous
J3_7RQB_001
NA
1/1/56:67,
1/1/74:76,
1/1/109:113
NANA
1/1/272:276,
1/1/295:302,
1/1/415:416

homologous
J3_7RQB_003
NA
1/1/728:734,
1/1/818:820,
1/1/836:839

homologous
J3_7RQB_004
NA
1/1/743:745,
1/1/777:781,
1/1/805:808

homologous
J3_7RQB_005
NA
1/1/1335:1340,
1/1/1669:1671,
1/1/1683:1686

homologous
J3_7RQB_007
NA
1/1/1342:1346,
1/1/1649:1655,
1/1/1664:1667
NANA
1/1/2118:2120,
1/1/2223:2228,
1/1/2249:2255
NANA
1/1/2322:2324,
1/1/2348:2350,
1/1/2359:2364

homologous
J3_7RQB_011
NA
1/1/2544:2547,
1/1/2572:2574,
1/1/2588:2594

homologous
J3_7RQB_012
NA
1/1/2834:2835,
1/1/2851:2856,
1/1/2902:2906

homologous
J3_7RQB_014
NA

Problematic loops

No problematic loops


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