6WRU Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/1/67:74 | geometric HL_4WF9_001 | NA HL_86769.2* | ||
1/1/87:95 | homologous HL_7RQB_002 | NA HL_17926.5* | ||
1/1/122:127 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
1/1/136:143 | geometric HL_5AOX_001 | NA HL_93727.5* | ||
1/1/158:170 | NA | NA | ||
1/1/197:204 | geometric HL_4V9F_006 | NA HL_23481.5* | ||
1/1/228:233 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
1/1/249:255 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
1/1/348:355 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
1/1/362:366 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
1/1/370:378 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
1/1/427:439 | NA | NA | ||
1/1/456:463 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
1/1/508:513 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
1/1/533:538 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
1/1/587:594 | geometric HL_4WF9_017 | NA HL_23219.1* | ||
1/1/609:618 | homologous HL_7RQB_018 | NA HL_33239.17* | ||
1/1/655:661 | NA | NA | ||
1/1/674:679 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
1/1/686:692 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
1/1/757:764 | NA | NA | ||
1/1/789:798 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
1/1/823:831 | geometric HL_5TBW_021 | NA HL_05832.1* | ||
1/1/871:876 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
1/1/999:1006 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
1/1/1022:1029 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
1/1/1213:1219 | NA | NA | ||
1/1/1260:1265 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
1/1/1318:1326 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
1/1/1361:1367 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
1/1/1400:1405 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
1/1/1426:1435 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
1/1/1492:1506 | NA | NA | ||
1/1/1612:1615 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
1/1/1656:1663 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
1/1/1673:1681 | geometric HL_4WF9_039 | NA HL_42733.4* | ||
1/1/1735:1740 | UNCG geometric HL_4V9F_044 | NA HL_79299.11* | ||
1/1/1779:1783 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
1/1/1804:1814 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
1/1/1833:1838 | geometric HL_5J7L_179 | NA HL_32527.3* | ||
1/1/1937:1947 | NA | NA | ||
1/1/1976:1984 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
1/1/2054:2063 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
1/1/2236:2242 | NA | NA | ||
1/1/2275:2283 | homologous HL_7RQB_053 | NA | ||
1/1/2291:2303 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
1/1/2351:2358 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
1/1/2382:2389 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
1/1/2401:2406 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
1/1/2431:2440 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
1/1/2498:2506 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
1/1/2555:2562 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
1/1/2578:2584 | geometric HL_4WF9_058 | NA HL_26055.6* | ||
1/1/2621:2626 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
1/1/2685:2690 | homologous HL_7RQB_064 | NA HL_43074.18* | ||
1/1/2728:2733 | Ribsomal LSU H95 geometric HL_5J7L_198 | NA HL_67719.1* | ||
1/1/2772:2786 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
1/1/2819:2824 | geometric HL_1WZ2_007 | NA HL_05692.1* | ||
1/1/2839:2847 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
1/1/2876:2881 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
1/2/36:42 | NA | NA | ||
1/2/77:92 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_6WRU_009 | NA | ||
HL_6WRU_026 | NA | ||
HL_6WRU_029 | NA | ||
HL_6WRU_037 | NA | ||
HL_6WRU_038 | NA | ||
HL_6WRU_043 | NA | ||
HL_6WRU_047 | NA | ||
HL_6WRU_051 | NA | ||
HL_6WRU_055 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/1/24:30, 1/1/555:561 | Triple sheared with non-canonical cWW geometric IL_4WF9_001 | NA IL_66414.5* | ||
1/1/36:37, 1/1/488:490 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
1/1/42:44, 1/1/480:483 | Minor groove platform with extra cWW geometric IL_4WF9_003 | NA IL_87332.1* | ||
1/1/81:85, 1/1/97:104 | Kink-turn homologous IL_7RQB_004 | NA IL_29549.9* | ||
1/1/152:153, 1/1/175:177 | Single bulged A geometric IL_4WF9_006 | NA IL_80007.16* | ||
1/1/186:187, 1/1/215:217 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
1/1/190:197, 1/1/204:212 | 9x8 Sarcin-Ricin; G-bulge geometric IL_4WF9_008 | NA IL_61812.1* | ||
1/1/241:248, 1/1/256:262 | 8x7 Sarcin-Ricin; G-bulge geometric IL_4WF9_009 | NA IL_04346.5* | ||
1/1/305:307, 1/1/408:412 | NA | NA | ||
1/1/328:333, 1/1/393:399 | NA | NA | ||
1/1/336:338, 1/1/386:390 | homologous IL_7RQB_013 | NA IL_69440.1* | ||
1/1/527:530, 1/1/541:554 | geometric IL_4WF9_015 | NA IL_60992.5* | ||
1/1/581:584, 1/1/597:600 | Double sheared geometric IL_4WF9_016 | NA IL_09705.7* | ||
1/1/607:609, 1/1/618:620 | geometric IL_4WF9_017 | NA IL_01312.13* | ||
1/1/638:640, 1/1/705:707 | geometric IL_4WF9_018 | NA IL_01312.13* | ||
1/1/649:653, 1/1/663:667 | AAA cross-strand stack homologous IL_7RQB_016 | NA IL_56467.6* | ||
1/1/717:719, 1/1/851:853 | geometric IL_7RQB_017 | NA IL_01312.13* | ||
1/1/719:723, 1/1/844:851 | homologous IL_7RQB_018 | NA IL_17470.5* | ||
1/1/742:743, 1/1/808:810 | Single bulged A geometric IL_5J7L_261 | NA IL_80007.16* | ||
1/1/747:748, 1/1/773:775 | Single bulged G geometric IL_4V9F_026 | NA IL_59137.10* | ||
1/1/748:752, 1/1/769:773 | Triple sheared homologous IL_7RQB_021 | NA IL_56467.6* | ||
1/1/783:785, 1/1/802:803 | Major groove platform geometric IL_4WF9_026 | NA IL_80663.10* | ||
1/1/820:822, 1/1/832:836 | Multiple bulged bases geometric IL_7RQB_023 | NA IL_90991.5* | ||
1/1/882:883, 1/1/984:986 | Single stack bend homologous IL_7RQB_024 | NA IL_04038.4* | ||
1/1/889:893, 1/1/975:978 | geometric IL_4WF9_029 | NA IL_06300.1* | ||
1/1/894:896, 1/1/972:974 | geometric IL_4WF9_020 | NA IL_01312.13* | ||
1/1/897:898, 1/1/969:971 | NA | NA | ||
1/1/901:907, 1/1/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge geometric IL_4WF9_031 | NA IL_93830.2* | ||
1/1/907:908, 1/1/958:960 | Minor groove platform homologous IL_7RQB_028 | NA IL_06437.11* | ||
1/1/909:913, 1/1/954:957 | C-loop homologous IL_7RQB_029 | NA IL_63596.4* | ||
1/1/915:917, 1/1/950:952 | Isolated cWS basepair homologous IL_7RQB_030 | NA IL_67621.5* | ||
1/1/1038:1040, 1/1/1203:1204 | Single bulged C homologous IL_7RQB_035 | NA IL_61258.10* | ||
1/1/1042:1046, 1/1/1197:1201 | UAA/GAN homologous IL_7RQB_036 | NA IL_53523.5* | ||
1/1/1048:1055, 1/1/1194:1195 | SSU/LSU pseudoknot homologous IL_7RQB_037 | NA IL_15861.6* | ||
1/1/1055:1057, 1/1/1193:1194 | Single bulged U geometric IL_5J7L_279 | NA IL_83039.11* | ||
1/1/1062:1068, 1/1/1184:1188 | geometric IL_4WF9_039 | NA IL_57188.3* | ||
1/1/1068:1074, 1/1/1168:1184 | geometric IL_4WF9_040 | NA IL_22615.1* | ||
1/1/1075:1078, 1/1/1165:1167 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | NA IL_55456.1* | ||
1/1/1081:1083, 1/1/1160:1162 | geometric IL_5Y7M_007 | NA IL_01312.13* | ||
1/1/1235:1237, 1/1/1285:1288 | Isolated cWS basepair homologous IL_7RQB_045 | NA IL_67621.5* | ||
1/1/1243:1245, 1/1/1277:1279 | Isolated cWH basepair geometric IL_4WF9_045 | NA IL_42589.6* | ||
1/1/1246:1253, 1/1/1272:1276 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
1/1/1257:1259, 1/1/1266:1268 | Intercalated cWW geometric IL_4WF9_047 | NA IL_04038.4* | ||
1/1/1300:1307, 1/1/2038:2044 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049 | NA IL_04346.5* | ||
1/1/1356:1360, 1/1/1368:1370 | C-loop homologous IL_7RQB_051 | NA IL_63596.4* | ||
1/1/1388:1392, 1/1/1413:1417 | UAA/GAN geometric IL_5J7L_292 | NA IL_34907.2* | ||
1/1/1394:1398, 1/1/1407:1411 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
1/1/1461:1465, 1/1/1624:1627 | Other IL geometric IL_4WF9_054 | NA IL_09705.7* | ||
1/1/1476:1480, 1/1/1604:1608 | NA | NA | ||
1/1/1481:1485, 1/1/1598:1603 | NA | NA | ||
1/1/1490:1492, 1/1/1506:1508 | geometric IL_3LA5_001 | NA IL_01312.13* | ||
1/1/1511:1516, 1/1/1564:1570 | geometric IL_4WF9_058 | NA IL_94518.4* | ||
1/1/1517:1523, 1/1/1557:1563 | NA | NA | ||
1/1/1695:1700, 1/1/2031:2033 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
1/1/1707:1709, 1/1/2022:2024 | Isolated tWW turn homologous IL_7RQB_065 | NA IL_54997.5* | ||
1/1/1710:1713, 1/1/2020:2021 | Major groove platform; stack outside cWW homologous IL_7RQB_066 | NA IL_80663.10* | ||
1/1/1713:1718, 1/1/2017:2020 | Intercalated tWH geometric IL_4WF9_065 | NA IL_01312.13* | ||
1/1/1730:1735, 1/1/1740:1746 | tSH-tSH-tHH-tHS homologous IL_7RQB_068 | NA IL_66584.5* | ||
1/1/1755:1761, 1/1/1768:1774 | NA | NA | ||
1/1/1797:1798, 1/1/2007:2009 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
1/1/1825:1831, 1/1/1840:1848 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
1/1/1864:1867, 1/1/1929:1930 | Major groove outside cWW, minor groove, intercalation pocket geometric IL_4V9F_066 | NA IL_31836.1* | ||
1/1/1867:1869, 1/1/1925:1929 | NA | NA | ||
1/1/1873:1876, 1/1/1920:1921 | Major groove minor groove platform; mini C-loop geometric IL_7RQB_113 | NA IL_09061.4* | ||
1/1/1878:1882, 1/1/1914:1918 | UAA/GAN with extra pair homologous IL_7RQB_074 | NA IL_34907.2* | ||
1/1/1883:1887, 1/1/1909:1913 | Triple sheared homologous IL_7RQB_075 | NA IL_56467.6* | ||
1/1/1891:1894, 1/1/1901:1905 | UAA/GAN related geometric IL_5J7L_317 | NA IL_81389.2* | ||
1/1/1960:1961, 1/1/1991:1994 | Multiple bulged bases geometric IL_5J7L_318 | NA IL_69632.1* | ||
1/1/1961:1972, 1/1/1988:1991 | geometric IL_7A0S_072 | NA IL_07097.1* | ||
1/1/2077:2079, 1/1/2644:2645 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
1/1/2081:2084, 1/1/2638:2642 | homologous IL_7RQB_079 | NA IL_01206.1* | ||
1/1/2094:2096, 1/1/2469:2470 | Single bulged U homologous IL_7RQB_080 | NA IL_83039.11* | ||
1/1/2097:2098, 1/1/2465:2468 | Minor groove platform homologous IL_7RQB_081 | NA IL_06437.11* | ||
1/1/2108:2110, 1/1/2263:2266 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
1/1/2229:2231, 1/1/2247:2248 | Single bulged G geometric IL_3NDB_004 | NA IL_59137.10* | ||
1/1/2324:2326, 1/1/2344:2348 | Isolated tHS basepair with bulges geometric IL_4WF9_086 | NA IL_38958.6* | ||
1/1/2377:2380, 1/1/2391:2394 | Double sheared homologous IL_7RQB_089 | NA IL_09705.7* | ||
1/1/2428:2430, 1/1/2441:2442 | Single bulged U geometric IL_4KZD_001 | NA IL_83039.11* | ||
1/1/2480:2481, 1/1/2525:2527 | Single stack bend homologous IL_7RQB_091 | NA IL_04038.4* | ||
1/1/2481:2482, 1/1/2523:2525 | Major groove platform geometric IL_4V9F_082 | NA IL_80663.10* | ||
1/1/2484:2486, 1/1/2520:2521 | Major groove platform geometric IL_7A0S_085 | NA IL_80663.10* | ||
1/1/2486:2488, 1/1/2516:2520 | Major groove minor groove platform with extra cWW geometric IL_7RQB_094 | NA IL_96042.4* | ||
1/1/2493:2497, 1/1/2507:2511 | Triple sheared homologous IL_7RQB_095 | NA IL_56467.6* | ||
1/1/2534:2536, 1/1/2606:2609 | Isolated non-canonical cWW with bulges geometric IL_5ML7_010 | NA IL_01312.13* | ||
1/1/2537:2539, 1/1/2601:2605 | Isolated non-canonical cWW with bulges homologous IL_7RQB_097 | NA IL_01312.13* | ||
1/1/2539:2540, 1/1/2598:2601 | geometric IL_4WF9_096 | NA IL_69632.1* | ||
1/1/2549:2550, 1/1/2567:2570 | Minor groove platform with intercalation homologous IL_7RQB_099 | NA IL_95601.1* | ||
1/1/2618:2619, 1/1/2628:2630 | NA | NA | ||
1/1/2663:2667, 1/1/2801:2809 | tSH-tHS-tHW homologous IL_7RQB_102 | NA IL_34907.2* | ||
1/1/2679:2685, 1/1/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge geometric IL_7A0S_094 | NA IL_35110.5* | ||
1/1/2707:2711, 1/1/2752:2754 | C-loop homologous IL_7RQB_104 | NA IL_63596.4* | ||
1/1/2714:2718, 1/1/2745:2749 | homologous IL_7RQB_105 | NA IL_08296.3* | ||
1/1/2722:2723, 1/1/2738:2741 | Multiple bulged bases homologous IL_7RQB_106 | NA IL_77034.1* | ||
1/1/2764:2769, 1/1/2789:2794 | UAA/GAN with extra cWW homologous IL_7RQB_107 | NA IL_49767.4* | ||
1/1/2857:2859, 1/1/2898:2901 | geometric IL_7A0S_092 | NA IL_01312.13* | ||
1/1/2863:2865, 1/1/2891:2894 | geometric IL_4WF9_107 | NA IL_02284.3* | ||
1/1/2867:2872, 1/1/2885:2889 | homologous IL_7RQB_110 | NA IL_83162.3* | ||
1/2/15:16, 1/2/63:65 | NA | NA | ||
1/2/21:27, 1/2/53:58 | NA | NA | ||
1/2/27:29, 1/2/49:53 | NA | NA | ||
1/2/32:36, 1/2/42:46 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_6WRU_098 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/1/30:31, 1/1/520:527, 1/1/554:555 | homologous J3_7RQB_001 | NA | ||
1/1/56:67, 1/1/74:76, 1/1/109:113 | NA | NA | ||
1/1/272:276, 1/1/295:302, 1/1/415:416 | homologous J3_7RQB_003 | NA | ||
1/1/728:734, 1/1/818:820, 1/1/836:839 | homologous J3_7RQB_004 | NA | ||
1/1/743:745, 1/1/777:781, 1/1/805:808 | homologous J3_7RQB_005 | NA | ||
1/1/1335:1340, 1/1/1669:1671, 1/1/1683:1686 | homologous J3_7RQB_007 | NA | ||
1/1/1342:1346, 1/1/1649:1655, 1/1/1664:1667 | NA | NA | ||
1/1/2118:2120, 1/1/2223:2228, 1/1/2249:2255 | NA | NA | ||
1/1/2322:2324, 1/1/2348:2350, 1/1/2359:2364 | homologous J3_7RQB_011 | NA | ||
1/1/2544:2547, 1/1/2572:2574, 1/1/2588:2594 | homologous J3_7RQB_012 | NA | ||
1/1/2834:2835, 1/1/2851:2856, 1/1/2902:2906 | homologous J3_7RQB_014 | NA |
Problematic loops
No problematic loops
Coloring options: