6WRU | Motifs

Valid loops

#	loop id	location	annotation	motif
1	HL_6WRU_001 ➜	1/1/67:74	NA	NA
2	HL_6WRU_002 ➜	1/1/87:95	NA	NA
3	HL_6WRU_003 ➜	1/1/122:127	NA	NA
4	HL_6WRU_004 ➜	1/1/136:143	NA	NA
5	HL_6WRU_005 ➜	1/1/158:170	NA	NA
6	HL_6WRU_006 ➜	1/1/197:204	NA	NA
7	HL_6WRU_007 ➜	1/1/228:233	NA	NA
8	HL_6WRU_008 ➜	1/1/249:255	NA	NA
9	HL_6WRU_010 ➜	1/1/348:355	NA	NA
10	HL_6WRU_011 ➜	1/1/362:366	NA	NA
11	HL_6WRU_012 ➜	1/1/370:378	NA	NA
12	HL_6WRU_013 ➜	1/1/427:439	NA	NA
13	HL_6WRU_014 ➜	1/1/456:463	NA	NA
14	HL_6WRU_015 ➜	1/1/508:513	NA	NA
15	HL_6WRU_016 ➜	1/1/533:538	NA	NA
16	HL_6WRU_017 ➜	1/1/587:594	NA	NA
17	HL_6WRU_018 ➜	1/1/609:618	NA	NA
18	HL_6WRU_019 ➜	1/1/655:661	NA	NA
19	HL_6WRU_020 ➜	1/1/674:679	NA	NA
20	HL_6WRU_021 ➜	1/1/686:692	NA	NA
21	HL_6WRU_022 ➜	1/1/757:764	NA	NA
22	HL_6WRU_023 ➜	1/1/789:798	NA	NA
23	HL_6WRU_024 ➜	1/1/823:831	NA	NA
24	HL_6WRU_025 ➜	1/1/871:876	NA	NA
25	HL_6WRU_027 ➜	1/1/999:1006	NA	NA
26	HL_6WRU_028 ➜	1/1/1022:1029	NA	NA
27	HL_6WRU_030 ➜	1/1/1213:1219	NA	NA
28	HL_6WRU_031 ➜	1/1/1260:1265	NA	NA
29	HL_6WRU_032 ➜	1/1/1318:1326	NA	NA
30	HL_6WRU_033 ➜	1/1/1361:1367	NA	NA
31	HL_6WRU_034 ➜	1/1/1400:1405	NA	NA
32	HL_6WRU_035 ➜	1/1/1426:1435	NA	NA
33	HL_6WRU_036 ➜	1/1/1492:1506	NA	NA
34	HL_6WRU_039 ➜	1/1/1612:1615	NA	NA
35	HL_6WRU_040 ➜	1/1/1656:1663	NA	NA
36	HL_6WRU_041 ➜	1/1/1673:1681	NA	NA
37	HL_6WRU_042 ➜	1/1/1735:1740	NA	NA
38	HL_6WRU_044 ➜	1/1/1779:1783	NA	NA
39	HL_6WRU_045 ➜	1/1/1804:1814	NA	NA
40	HL_6WRU_046 ➜	1/1/1833:1838	NA	NA
41	HL_6WRU_048 ➜	1/1/1937:1947	NA	NA
42	HL_6WRU_049 ➜	1/1/1976:1984	NA	NA
43	HL_6WRU_050 ➜	1/1/2054:2063	NA	NA
44	HL_6WRU_052 ➜	1/1/2236:2242	NA	NA
45	HL_6WRU_053 ➜	1/1/2275:2283	NA	NA
46	HL_6WRU_054 ➜	1/1/2291:2303	NA	NA
47	HL_6WRU_056 ➜	1/1/2351:2358	NA	NA
48	HL_6WRU_057 ➜	1/1/2382:2389	NA	NA
49	HL_6WRU_058 ➜	1/1/2401:2406	NA	NA
50	HL_6WRU_059 ➜	1/1/2431:2440	NA	NA
51	HL_6WRU_060 ➜	1/1/2498:2506	NA	NA
52	HL_6WRU_061 ➜	1/1/2555:2562	NA	NA
53	HL_6WRU_062 ➜	1/1/2578:2584	NA	NA
54	HL_6WRU_063 ➜	1/1/2621:2626	NA	NA
55	HL_6WRU_064 ➜	1/1/2685:2690	NA	NA
56	HL_6WRU_065 ➜	1/1/2728:2733	NA	NA
57	HL_6WRU_066 ➜	1/1/2772:2786	NA	NA
58	HL_6WRU_067 ➜	1/1/2819:2824	NA	NA
59	HL_6WRU_068 ➜	1/1/2839:2847	NA	NA
60	HL_6WRU_069 ➜	1/1/2876:2881	NA	NA
61	HL_6WRU_070 ➜	1/2/36:42	NA	NA
62	HL_6WRU_071 ➜	1/2/77:92	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_6WRU_009 ➜	missing nts	NA
2	HL_6WRU_026 ➜	missing nts	NA
3	HL_6WRU_029 ➜	missing nts	NA
4	HL_6WRU_037 ➜	missing nts	NA
5	HL_6WRU_038 ➜	missing nts	NA
6	HL_6WRU_043 ➜	missing nts	NA
7	HL_6WRU_047 ➜	missing nts	NA
8	HL_6WRU_051 ➜	missing nts	NA
9	HL_6WRU_055 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_6WRU_001 ➜	1/1/24:30,1/1/555:561	NA	NA
2	IL_6WRU_002 ➜	1/1/36:37,1/1/488:490	NA	NA
3	IL_6WRU_003 ➜	1/1/42:44,1/1/480:483	NA	NA
4	IL_6WRU_004 ➜	1/1/81:85,1/1/97:104	NA	NA
5	IL_6WRU_005 ➜	1/1/152:153,1/1/175:177	NA	NA
6	IL_6WRU_006 ➜	1/1/186:187,1/1/215:217	NA	NA
7	IL_6WRU_007 ➜	1/1/190:197,1/1/204:212	NA	NA
8	IL_6WRU_008 ➜	1/1/241:248,1/1/256:262	NA	NA
9	IL_6WRU_009 ➜	1/1/305:307,1/1/408:412	NA	NA
10	IL_6WRU_010 ➜	1/1/328:333,1/1/393:399	NA	NA
11	IL_6WRU_011 ➜	1/1/336:338,1/1/386:390	NA	NA
12	IL_6WRU_012 ➜	1/1/527:530,1/1/541:554	NA	NA
13	IL_6WRU_013 ➜	1/1/581:584,1/1/597:600	NA	NA
14	IL_6WRU_014 ➜	1/1/607:609,1/1/618:620	NA	NA
15	IL_6WRU_015 ➜	1/1/638:640,1/1/705:707	NA	NA
16	IL_6WRU_016 ➜	1/1/649:653,1/1/663:667	NA	NA
17	IL_6WRU_017 ➜	1/1/717:719,1/1/851:853	NA	NA
18	IL_6WRU_018 ➜	1/1/719:723,1/1/844:851	NA	NA
19	IL_6WRU_019 ➜	1/1/742:743,1/1/808:810	NA	NA
20	IL_6WRU_020 ➜	1/1/747:748,1/1/773:775	NA	NA
21	IL_6WRU_021 ➜	1/1/748:752,1/1/769:773	NA	NA
22	IL_6WRU_022 ➜	1/1/783:785,1/1/802:803	NA	NA
23	IL_6WRU_023 ➜	1/1/820:822,1/1/832:836	NA	NA
24	IL_6WRU_024 ➜	1/1/882:883,1/1/984:986	NA	NA
25	IL_6WRU_025 ➜	1/1/889:893,1/1/975:978	NA	NA
26	IL_6WRU_026 ➜	1/1/894:896,1/1/972:974	NA	NA
27	IL_6WRU_027 ➜	1/1/897:898,1/1/969:971	NA	NA
28	IL_6WRU_028 ➜	1/1/901:907,1/1/960:966	NA	NA
29	IL_6WRU_029 ➜	1/1/907:908,1/1/958:960	NA	NA
30	IL_6WRU_030 ➜	1/1/909:913,1/1/954:957	NA	NA
31	IL_6WRU_031 ➜	1/1/915:917,1/1/950:952	NA	NA
32	IL_6WRU_032 ➜	1/1/1038:1040,1/1/1203:1204	NA	NA
33	IL_6WRU_033 ➜	1/1/1042:1046,1/1/1197:1201	NA	NA
34	IL_6WRU_034 ➜	1/1/1048:1055,1/1/1194:1195	NA	NA
35	IL_6WRU_035 ➜	1/1/1055:1057,1/1/1193:1194	NA	NA
36	IL_6WRU_036 ➜	1/1/1062:1068,1/1/1184:1188	NA	NA
37	IL_6WRU_037 ➜	1/1/1068:1074,1/1/1168:1184	NA	NA
38	IL_6WRU_038 ➜	1/1/1075:1078,1/1/1165:1167	NA	NA
39	IL_6WRU_039 ➜	1/1/1081:1083,1/1/1160:1162	NA	NA
40	IL_6WRU_040 ➜	1/1/1235:1237,1/1/1285:1288	NA	NA
41	IL_6WRU_041 ➜	1/1/1243:1245,1/1/1277:1279	NA	NA
42	IL_6WRU_042 ➜	1/1/1246:1253,1/1/1272:1276	NA	NA
43	IL_6WRU_043 ➜	1/1/1257:1259,1/1/1266:1268	NA	NA
44	IL_6WRU_044 ➜	1/1/1300:1307,1/1/2038:2044	NA	NA
45	IL_6WRU_045 ➜	1/1/1356:1360,1/1/1368:1370	NA	NA
46	IL_6WRU_046 ➜	1/1/1388:1392,1/1/1413:1417	NA	NA
47	IL_6WRU_047 ➜	1/1/1394:1398,1/1/1407:1411	NA	NA
48	IL_6WRU_048 ➜	1/1/1461:1465,1/1/1624:1627	NA	NA
49	IL_6WRU_049 ➜	1/1/1476:1480,1/1/1604:1608	NA	NA
50	IL_6WRU_050 ➜	1/1/1481:1485,1/1/1598:1603	NA	NA
51	IL_6WRU_051 ➜	1/1/1490:1492,1/1/1506:1508	NA	NA
52	IL_6WRU_052 ➜	1/1/1511:1516,1/1/1564:1570	NA	NA
53	IL_6WRU_053 ➜	1/1/1517:1523,1/1/1557:1563	NA	NA
54	IL_6WRU_054 ➜	1/1/1695:1700,1/1/2031:2033	NA	NA
55	IL_6WRU_055 ➜	1/1/1707:1709,1/1/2022:2024	NA	NA
56	IL_6WRU_056 ➜	1/1/1710:1713,1/1/2020:2021	NA	NA
57	IL_6WRU_057 ➜	1/1/1713:1718,1/1/2017:2020	NA	NA
58	IL_6WRU_058 ➜	1/1/1730:1735,1/1/1740:1746	NA	NA
59	IL_6WRU_059 ➜	1/1/1755:1761,1/1/1768:1774	NA	NA
60	IL_6WRU_060 ➜	1/1/1797:1798,1/1/2007:2009	NA	NA
61	IL_6WRU_061 ➜	1/1/1825:1831,1/1/1840:1848	NA	NA
62	IL_6WRU_062 ➜	1/1/1864:1867,1/1/1929:1930	NA	NA
63	IL_6WRU_063 ➜	1/1/1867:1869,1/1/1925:1929	NA	NA
64	IL_6WRU_064 ➜	1/1/1873:1876,1/1/1920:1921	NA	NA
65	IL_6WRU_065 ➜	1/1/1878:1882,1/1/1914:1918	NA	NA
66	IL_6WRU_066 ➜	1/1/1883:1887,1/1/1909:1913	NA	NA
67	IL_6WRU_067 ➜	1/1/1891:1894,1/1/1901:1905	NA	NA
68	IL_6WRU_068 ➜	1/1/1960:1961,1/1/1991:1994	NA	NA
69	IL_6WRU_069 ➜	1/1/1961:1972,1/1/1988:1991	NA	NA
70	IL_6WRU_070 ➜	1/1/2077:2079,1/1/2644:2645	NA	NA
71	IL_6WRU_071 ➜	1/1/2081:2084,1/1/2638:2642	NA	NA
72	IL_6WRU_072 ➜	1/1/2094:2096,1/1/2469:2470	NA	NA
73	IL_6WRU_073 ➜	1/1/2097:2098,1/1/2465:2468	NA	NA
74	IL_6WRU_074 ➜	1/1/2108:2110,1/1/2263:2266	NA	NA
75	IL_6WRU_075 ➜	1/1/2229:2231,1/1/2247:2248	NA	NA
76	IL_6WRU_076 ➜	1/1/2324:2326,1/1/2344:2348	NA	NA
77	IL_6WRU_077 ➜	1/1/2377:2380,1/1/2391:2394	NA	NA
78	IL_6WRU_078 ➜	1/1/2428:2430,1/1/2441:2442	NA	NA
79	IL_6WRU_079 ➜	1/1/2480:2481,1/1/2525:2527	NA	NA
80	IL_6WRU_080 ➜	1/1/2481:2482,1/1/2523:2525	NA	NA
81	IL_6WRU_081 ➜	1/1/2484:2486,1/1/2520:2521	NA	NA
82	IL_6WRU_082 ➜	1/1/2486:2488,1/1/2516:2520	NA	NA
83	IL_6WRU_083 ➜	1/1/2493:2497,1/1/2507:2511	NA	NA
84	IL_6WRU_084 ➜	1/1/2534:2536,1/1/2606:2609	NA	NA
85	IL_6WRU_085 ➜	1/1/2537:2539,1/1/2601:2605	NA	NA
86	IL_6WRU_086 ➜	1/1/2539:2540,1/1/2598:2601	NA	NA
87	IL_6WRU_087 ➜	1/1/2549:2550,1/1/2567:2570	NA	NA
88	IL_6WRU_088 ➜	1/1/2618:2619,1/1/2628:2630	NA	NA
89	IL_6WRU_089 ➜	1/1/2663:2667,1/1/2801:2809	NA	NA
90	IL_6WRU_090 ➜	1/1/2679:2685,1/1/2690:2695	NA	NA
91	IL_6WRU_091 ➜	1/1/2707:2711,1/1/2752:2754	NA	NA
92	IL_6WRU_092 ➜	1/1/2714:2718,1/1/2745:2749	NA	NA
93	IL_6WRU_093 ➜	1/1/2722:2723,1/1/2738:2741	NA	NA
94	IL_6WRU_094 ➜	1/1/2764:2769,1/1/2789:2794	NA	NA
95	IL_6WRU_095 ➜	1/1/2857:2859,1/1/2898:2901	NA	NA
96	IL_6WRU_096 ➜	1/1/2863:2865,1/1/2891:2894	NA	NA
97	IL_6WRU_097 ➜	1/1/2867:2872,1/1/2885:2889	NA	NA
98	IL_6WRU_099 ➜	1/2/15:16,1/2/63:65	NA	NA
99	IL_6WRU_100 ➜	1/2/21:27,1/2/53:58	NA	NA
100	IL_6WRU_101 ➜	1/2/27:29,1/2/49:53	NA	NA
101	IL_6WRU_102 ➜	1/2/32:36,1/2/42:46	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_6WRU_098 ➜	incomplete nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_6WRU_001 ➜	1/1/30:31,1/1/520:527,1/1/554:555	NA	NA
2	J3_6WRU_002 ➜	1/1/56:67,1/1/74:76,1/1/109:113	NA	NA
3	J3_6WRU_003 ➜	1/1/272:276,1/1/295:302,1/1/415:416	NA	NA
4	J3_6WRU_004 ➜	1/1/728:734,1/1/818:820,1/1/836:839	NA	NA
5	J3_6WRU_005 ➜	1/1/743:745,1/1/777:781,1/1/805:808	NA	NA
6	J3_6WRU_006 ➜	1/1/1335:1340,1/1/1669:1671,1/1/1683:1686	NA	NA
7	J3_6WRU_007 ➜	1/1/1342:1346,1/1/1649:1655,1/1/1664:1667	NA	NA
8	J3_6WRU_008 ➜	1/1/2118:2120,1/1/2223:2228,1/1/2249:2255	NA	NA
9	J3_6WRU_009 ➜	1/1/2322:2324,1/1/2348:2350,1/1/2359:2364	NA	NA
10	J3_6WRU_010 ➜	1/1/2544:2547,1/1/2572:2574,1/1/2588:2594	NA	NA
11	J3_6WRU_011 ➜	1/1/2834:2835,1/1/2851:2856,1/1/2902:2906	NA	NA

Problematic loops

No problematic loops

6WRU Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops