7K53 | Motifs

110 Hairpin loops
177 Internal loops
26 Junction loops

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	HL_7K53_001	1/1/59:68	geometric HL_4GXY_003	NA HL_67719.1*
2	HL_7K53_002	1/1/87:95	geometric HL_5J7L_135	NA HL_17926.5*
3	HL_7K53_003	1/1/123:128	homologous HL_7RQB_003	NA HL_62869.3*
4	HL_7K53_004	1/1/137:142	geometric HL_5TBW_022	NA HL_15942.5*
5	HL_7K53_005	1/1/158:168	geometric HL_5J7L_138	NA HL_81820.1*
6	HL_7K53_006	1/1/194:201	geometric HL_4WF9_006	NA HL_23481.5*
7	HL_7K53_007	1/1/225:230	geometric HL_5U3G_001	NA HL_40469.1*
8	HL_7K53_008	1/1/246:252	homologous HL_7RQB_008	NA HL_67216.5*
9	HL_7K53_009	1/1/305:312	homologous HL_7RQB_010	NA HL_68493.6*
10	HL_7K53_010	1/1/327:335	homologous HL_7RQB_012	NA HL_08002.6*
11	HL_7K53_011	1/1/382:392	homologous HL_7RQB_013	NA HL_91503.3*
12	HL_7K53_012	1/1/410:417	homologous HL_7RQB_014	NA HL_32512.8*
13	HL_7K53_013	1/1/462:467	homologous HL_7RQB_015	NA HL_43074.18*
14	HL_7K53_014	1/1/487:493	homologous HL_7RQB_016	NA HL_43074.18*
15	HL_7K53_015	1/1/545:548	NA	NA
16	HL_7K53_016	1/1/566:575	T-loop with 2 stacked bulged bases geometric HL_5J7L_150	NA HL_33239.17*
17	HL_7K53_017	1/1/611:617	geometric HL_5J7L_151	NA HL_25660.1*
18	HL_7K53_018	1/1/629:634	homologous HL_7RQB_020	NA HL_43074.18*
19	HL_7K53_019	1/1/640:648	geometric HL_1U9S_003	NA HL_93727.5*
20	HL_7K53_020	1/1/712:719	homologous HL_7RQB_022	NA HL_93727.5*
21	HL_7K53_021	1/1/744:753	homologous HL_7RQB_023	NA HL_39334.5*
22	HL_7K53_022	1/1/779:785	geometric HL_6JQ6_004	NA HL_79299.11*
23	HL_7K53_023	1/1/826:831	homologous HL_7RQB_025	NA HL_15942.5*
24	HL_7K53_024	1/1/884:892	NA	NA
25	HL_7K53_025	1/1/955:962	homologous HL_7RQB_027	NA HL_43074.18*
26	HL_7K53_026	1/1/978:985	homologous HL_7RQB_028	NA HL_72451.5*
27	HL_7K53_027	1/1/1064:1074	NA	NA
28	HL_7K53_028	1/1/1092:1099	homologous HL_7RQB_030	NA
29	HL_7K53_029	1/1/1171:1178	NA	NA
30	HL_7K53_030	1/1/1222:1227	homologous HL_7RQB_032	NA HL_43074.18*
31	HL_7K53_031	1/1/1281:1289	homologous HL_7RQB_033	NA HL_33239.17*
32	HL_7K53_032	1/1/1324:1330	homologous HL_7RQB_034	NA HL_86880.5*
33	HL_7K53_033	1/1/1363:1368	homologous HL_7RQB_035	NA HL_43074.18*
34	HL_7K53_034	1/1/1389:1398	homologous HL_7RQB_036	NA HL_78457.4*
35	HL_7K53_035	1/1/1451:1459	geometric HL_1ZBH_001	NA HL_36982.3*
36	HL_7K53_036	1/1/1492:1498	homologous HL_7RQB_038	NA HL_86880.5*
37	HL_7K53_037	1/1/1533:1538	NA	NA
38	HL_7K53_038	1/1/1565:1568	homologous HL_7RQB_039	NA HL_69353.7*
39	HL_7K53_039	1/1/1612:1619	homologous HL_7RQB_040	NA HL_66171.3*
40	HL_7K53_040	1/1/1630:1636	GNRA with one bulged base geometric HL_5J7L_174	NA HL_02361.6*
41	HL_7K53_041	1/1/1691:1696	homologous HL_7RQB_042	NA HL_79299.11*
42	HL_7K53_042	1/1/1727:1733	geometric HL_361D_002	NA HL_18218.2*
43	HL_7K53_043	1/1/1752:1756	homologous HL_7RQB_044	NA HL_79272.3*
44	HL_7K53_044	1/1/1777:1787	homologous HL_7RQB_045	NA HL_43613.4*
45	HL_7K53_045	1/1/1806:1811	homologous HL_7RQB_046	NA HL_43074.18*
46	HL_7K53_046	1/1/1868:1873	geometric HL_5J7L_179	NA HL_32527.3*
47	HL_7K53_047	1/1/1910:1920	geometric HL_5TBW_049	NA HL_98248.1*
48	HL_7K53_048	1/1/1949:1957	homologous HL_7RQB_049	NA HL_53760.4*
49	HL_7K53_049	1/1/2027:2036	homologous HL_7RQB_050	NA HL_90642.5*
50	HL_7K53_050	1/1/2142:2149	NA	NA
51	HL_7K53_051	1/1/2209:2215	geometric HL_5J7L_185	NA HL_16845.5*
52	HL_7K53_052	1/1/2248:2256	homologous HL_7RQB_053	NA
53	HL_7K53_053	1/1/2264:2276	homologous HL_7RQB_054	NA HL_19870.5*
54	HL_7K53_054	1/1/2303:2313	homologous HL_7RQB_055	NA HL_11805.3*
55	HL_7K53_055	1/1/2324:2331	homologous HL_7RQB_056	NA HL_46142.8*
56	HL_7K53_056	1/1/2356:2361	Other HL geometric HL_5J7L_190	NA HL_43074.18*
57	HL_7K53_057	1/1/2374:2379	homologous HL_7RQB_058	NA HL_43074.18*
58	HL_7K53_058	1/1/2404:2413	homologous HL_7RQB_059	NA HL_48376.4*
59	HL_7K53_059	1/1/2471:2479	homologous HL_7RQB_060	NA HL_36421.5*
60	HL_7K53_060	1/1/2528:2535	homologous HL_7RQB_061	NA HL_92681.5*
61	HL_7K53_061	1/1/2551:2557	homologous HL_7RQB_062	NA
62	HL_7K53_062	1/1/2594:2599	homologous HL_7RQB_063	NA HL_43074.18*
63	HL_7K53_063	1/1/2658:2663	homologous HL_7RQB_064	NA HL_43074.18*
64	HL_7K53_064	1/1/2701:2706	Ribsomal LSU H95 geometric HL_5J7L_198	NA HL_67719.1*
65	HL_7K53_065	1/1/2745:2759	homologous HL_7RQB_066	NA HL_56677.5*
66	HL_7K53_066	1/1/2795:2801	geometric HL_6VMY_004	NA HL_16898.3*
67	HL_7K53_067	1/1/2819:2827	homologous HL_7RQB_068	NA HL_05018.6*
68	HL_7K53_068	1/1/2856:2861	homologous HL_7RQB_069	NA HL_43074.18*
69	HL_7K53_069	1/2/38:44	homologous HL_5TBW_185	NA HL_02733.5*
70	HL_7K53_070	1/2/86:90	geometric HL_5J7L_204	NA HL_36982.3*
71	HL_7K53_071	1/3/12:22	NA	NA
72	HL_7K53_072	1/3/78:91	NA	NA
73	HL_7K53_073	1/3/158:163	NA	NA
74	HL_7K53_074	1/3/186:191	NA	NA
75	HL_7K53_075	1/3/206:213	NA	NA
76	HL_7K53_076	1/3/259:267	NA	NA
77	HL_7K53_077	1/3/296:301	NA	NA
78	HL_7K53_078	1/3/320:333	NA	NA
79	HL_7K53_079	1/3/342:347	NA	NA
80	HL_7K53_080	1/3/379:384	NA	NA
81	HL_7K53_081	1/3/419:424	NA	NA
82	HL_7K53_082	1/3/462:470	NA	NA
83	HL_7K53_083	1/3/522:527	NA	NA
84	HL_7K53_084	1/3/617:623	NA	NA
85	HL_7K53_085	1/3/689:698	NA	NA
86	HL_7K53_086	1/3/726:731	NA	NA
87	HL_7K53_087	1/3/786:796	NA	NA
88	HL_7K53_088	1/3/840:846	NA	NA
89	HL_7K53_089	1/3/862:867	NA	NA
90	HL_7K53_090	1/3/897:902	NA	NA
91	HL_7K53_091	1/3/963:972	NA	NA
92	HL_7K53_092	1/3/1012:1017	NA	NA
93	HL_7K53_093	1/3/1076:1081	NA	NA
94	HL_7K53_094	1/3/1089:1096	NA	NA
95	HL_7K53_095	1/3/1134:1140	NA	NA
96	HL_7K53_096	1/3/1165:1171	NA	NA
97	HL_7K53_097	1/3/1265:1270	NA	NA
98	HL_7K53_098	1/3/1314:1323	NA	NA
99	HL_7K53_099	1/3/1356:1366	NA	NA
100	HL_7K53_100	1/3/1449:1454	NA	NA
101	HL_7K53_101	1/3/1515:1520	NA	NA
102	HL_7K53_102	1/5/13:22	NA	NA
103	HL_7K53_103	1/5/31:39	NA	NA
104	HL_7K53_104	1/5/53:61	NA	NA
105	HL_7K53_105	1/6/13:22	NA	NA
106	HL_7K53_106	1/6/31:39	NA	NA
107	HL_7K53_107	1/6/53:61	NA	NA
108	HL_7K53_108	1/7/13:22	NA	NA
109	HL_7K53_109	1/7/31:39	NA	NA
110	HL_7K53_110	1/7/53:61	NA	NA

Problematic loops

No problematic loops

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	IL_7K53_001	1/1/24:30, 1/1/510:516	Triple sheared with non-canonical cWW homologous IL_7RQB_001	NA IL_66414.5*
2	IL_7K53_002	1/1/36:37, 1/1/442:444	Single bulged A homologous IL_7RQB_002	NA IL_80007.16*
3	IL_7K53_003	1/1/43:44, 1/1/434:436	Minor groove platform homologous IL_7RQB_003	NA IL_06437.11*
4	IL_7K53_004	1/1/81:85, 1/1/97:105	Kink-turn homologous IL_7RQB_004	NA IL_29549.9*
5	IL_7K53_005	1/1/183:184, 1/1/212:214	Single stack bend homologous IL_7RQB_005	NA IL_04038.4*
6	IL_7K53_006	1/1/188:194, 1/1/201:208	8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_006	NA IL_04346.5*
7	IL_7K53_007	1/1/239:245, 1/1/253:258	7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007	NA IL_35110.5*
8	IL_7K53_008	1/1/269:271, 1/1/366:370	geometric IL_5J7L_252	NA IL_47972.1*
9	IL_7K53_009	1/1/274:282, 1/1/358:363	NA	NA
10	IL_7K53_010	1/1/293:295, 1/1/343:347	homologous IL_7RQB_013	NA IL_69440.1*
11	IL_7K53_011	1/1/481:484, 1/1/496:509	homologous IL_7RQB_014	NA IL_60992.5*
12	IL_7K53_012	1/1/536:539, 1/1/554:557	Double sheared geometric IL_5J7L_256	NA IL_09705.7*
13	IL_7K53_013	1/1/564:566, 1/1/575:577	homologous IL_7RQB_015	NA IL_01312.13*
14	IL_7K53_014	1/1/606:610, 1/1/618:622	AAA cross-strand stack homologous IL_7RQB_016	NA IL_56467.6*
15	IL_7K53_015	1/1/672:674, 1/1/806:808	geometric IL_5J7L_259	NA IL_01312.13*
16	IL_7K53_016	1/1/674:678, 1/1/799:806	homologous IL_7RQB_018	NA IL_17470.5*
17	IL_7K53_017	1/1/697:698, 1/1/763:765	Single bulged A homologous IL_7RQB_019	NA IL_80007.16*
18	IL_7K53_018	1/1/702:703, 1/1/728:730	Single bulged G homologous IL_7RQB_020	NA IL_59137.10*
19	IL_7K53_019	1/1/703:707, 1/1/724:728	Triple sheared geometric IL_5J7L_263	NA IL_56467.6*
20	IL_7K53_020	1/1/738:740, 1/1/757:758	Major groove platform geometric IL_4WF9_026	NA IL_80663.10*
21	IL_7K53_021	1/1/775:777, 1/1/787:791	Multiple bulged bases homologous IL_7RQB_023	NA IL_90991.5*
22	IL_7K53_022	1/1/844:847, 1/1/933:934	Other IL geometric IL_5J7L_267	NA IL_31836.1*
23	IL_7K53_023	1/1/847:848, 1/1/930:933	Stack outside cWW geometric IL_5J7L_268	NA IL_37629.1*
24	IL_7K53_024	1/1/850:851, 1/1/926:928	Single stack bend geometric IL_4V9F_081	NA IL_04038.4*
25	IL_7K53_025	1/1/856:862, 1/1/915:921	7x7 Sarcin-Ricin with intercalated A; G-bulge geometric IL_5J7L_270	NA IL_93830.2*
26	IL_7K53_026	1/1/862:863, 1/1/913:915	Minor groove platform homologous IL_7RQB_028	NA IL_06437.11*
27	IL_7K53_027	1/1/864:868, 1/1/909:912	C-loop homologous IL_7RQB_029	NA IL_63596.4*
28	IL_7K53_028	1/1/870:872, 1/1/905:907	geometric IL_5J7L_273	NA IL_01312.13*
29	IL_7K53_029	1/1/875:879, 1/1/898:902	Triple sheared geometric IL_4V9F_085	NA IL_56467.6*
30	IL_7K53_030	1/1/880:881, 1/1/895:897	Minor groove platform geometric IL_4V88_445	NA IL_06437.11*
31	IL_7K53_031	1/1/994:996, 1/1/1159:1160	Single bulged C homologous IL_7RQB_035	NA IL_61258.10*
32	IL_7K53_032	1/1/998:1002, 1/1/1153:1157	UAA/GAN homologous IL_7RQB_036	NA IL_53523.5*
33	IL_7K53_033	1/1/1004:1011, 1/1/1150:1151	SSU/LSU pseudoknot geometric IL_5J7L_278	NA IL_15861.6*
34	IL_7K53_034	1/1/1011:1013, 1/1/1149:1150	Single bulged U homologous IL_7RQB_038	NA IL_83039.11*
35	IL_7K53_035	1/1/1018:1024, 1/1/1140:1144	homologous IL_7RQB_039	NA IL_57188.3*
36	IL_7K53_036	1/1/1024:1030, 1/1/1124:1140	geometric IL_5J7L_281	NA IL_22615.1*
37	IL_7K53_037	1/1/1031:1034, 1/1/1121:1123	Isolated non-canonical cWW with bulges homologous IL_7RQB_041	NA IL_55456.1*
38	IL_7K53_038	1/1/1038:1041, 1/1/1114:1117	Tandem non-canonical cWW pairs geometric IL_5TBW_100	NA IL_85877.10*
39	IL_7K53_039	1/1/1043:1051, 1/1/1108:1112	Kink-turn homologous IL_7RQB_042	NA IL_90538.3*
40	IL_7K53_040	1/1/1059:1062, 1/1/1076:1079	NA	NA
41	IL_7K53_041	1/1/1087:1090, 1/1/1101:1102	Major groove platform geometric IL_3OXE_003	NA IL_80663.10*
42	IL_7K53_042	1/1/1168:1171, 1/1/1178:1181	NA	NA
43	IL_7K53_043	1/1/1196:1198, 1/1/1247:1250	Isolated cWS basepair homologous IL_7RQB_045	NA IL_67621.5*
44	IL_7K53_044	1/1/1202:1206, 1/1/1240:1243	geometric IL_5J7L_287	NA IL_91920.1*
45	IL_7K53_045	1/1/1208:1215, 1/1/1234:1238	Kink-turn homologous IL_7RQB_047	NA IL_29549.9*
46	IL_7K53_046	1/1/1262:1269, 1/1/2011:2017	8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049	NA IL_04346.5*
47	IL_7K53_047	1/1/1310:1313, 1/1/1603:1604	Major groove platform; stack outside cWW homologous IL_7RQB_050	NA IL_70995.6*
48	IL_7K53_048	1/1/1319:1323, 1/1/1331:1333	C-loop homologous IL_7RQB_051	NA IL_63596.4*
49	IL_7K53_049	1/1/1351:1355, 1/1/1376:1380	UAA/GAN geometric IL_5J7L_292	NA IL_34907.2*
50	IL_7K53_050	1/1/1357:1361, 1/1/1370:1374	tSH-tHW-tHS homologous IL_7RQB_053	NA IL_39521.5*
51	IL_7K53_051	1/1/1415:1416, 1/1/1582:1587	homologous IL_7RQB_054	NA IL_67474.3*
52	IL_7K53_052	1/1/1417:1421, 1/1/1577:1581	UAA/GAN homologous IL_7RQB_055	NA IL_53523.5*
53	IL_7K53_053	1/1/1432:1435, 1/1/1557:1561	Tandem non-canonical cWW pairs geometric IL_5J7L_296	NA IL_85877.10*
54	IL_7K53_054	1/1/1437:1440, 1/1/1551:1555	tSH-tHW homologous IL_7RQB_057	NA IL_08757.3*
55	IL_7K53_055	1/1/1450:1451, 1/1/1459:1461	Single bulged U geometric IL_5J7L_298	NA IL_83039.11*
56	IL_7K53_056	1/1/1468:1471, 1/1/1520:1524	geometric IL_5J7L_299	NA IL_68574.2*
57	IL_7K53_057	1/1/1473:1478, 1/1/1513:1518	5x5 Sarcin-Ricin with intercalated A; G-bulge geometric IL_7A0S_027	NA IL_89193.1*
58	IL_7K53_058	1/1/1481:1482, 1/1/1507:1510	geometric IL_5J7L_301	NA IL_67474.3*
59	IL_7K53_059	1/1/1489:1491, 1/1/1499:1500	Single bulged A homologous IL_7RQB_062	NA IL_40508.4*
60	IL_7K53_060	1/1/1526:1529, 1/1/1542:1546	UAA/GAN variation geometric IL_5J7L_303	NA IL_81389.2*
61	IL_7K53_061	1/1/1651:1656, 1/1/2004:2006	homologous IL_7RQB_064	NA IL_12566.2*
62	IL_7K53_062	1/1/1663:1665, 1/1/1995:1997	Isolated tWW turn homologous IL_7RQB_065	NA IL_54997.5*
63	IL_7K53_063	1/1/1666:1669, 1/1/1993:1994	Major groove platform; stack outside cWW homologous IL_7RQB_066	NA IL_80663.10*
64	IL_7K53_064	1/1/1669:1674, 1/1/1990:1993	Intercalated tWH geometric IL_7A0S_062	NA IL_95601.1*
65	IL_7K53_065	1/1/1686:1691, 1/1/1696:1702	tSH-tSH-tHH-tHS geometric IL_7RQB_068	NA IL_66584.5*
66	IL_7K53_066	1/1/1712:1718, 1/1/1742:1746	6x5 Sarcin-Ricin; G-bulge geometric IL_5J7L_309	NA IL_88269.2*
67	IL_7K53_067	1/1/1720:1724, 1/1/1736:1740	Triple sheared geometric IL_5J7L_310	NA IL_56467.6*
68	IL_7K53_068	1/1/1770:1771, 1/1/1980:1982	Single bulged A homologous IL_7RQB_069	NA IL_80007.16*
69	IL_7K53_069	1/1/1798:1804, 1/1/1813:1821	Kink-turn related homologous IL_7RQB_070	NA IL_17069.3*
70	IL_7K53_070	1/1/1837:1840, 1/1/1902:1903	Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071	NA IL_31836.1*
71	IL_7K53_071	1/1/1841:1842, 1/1/1898:1901	Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_072	NA IL_13730.12*
72	IL_7K53_072	1/1/1846:1849, 1/1/1893:1894	Major groove minor groove platform; mini C-loop geometric IL_5J7L_316	NA IL_09061.4*
73	IL_7K53_073	1/1/1864:1867, 1/1/1874:1878	UAA/GAN related geometric IL_5J7L_317	NA IL_81389.2*
74	IL_7K53_074	1/1/1933:1934, 1/1/1964:1967	Multiple bulged bases homologous IL_7RQB_076	NA IL_69632.1*
75	IL_7K53_075	1/1/1934:1945, 1/1/1961:1964	geometric IL_7A0S_072	NA IL_07097.1*
76	IL_7K53_076	1/1/2050:2052, 1/1/2617:2618	Major groove platform homologous IL_7RQB_078	NA IL_80663.10*
77	IL_7K53_077	1/1/2054:2056, 1/1/2612:2615	geometric IL_5J7L_321	NA IL_54678.3*
78	IL_7K53_078	1/1/2067:2069, 1/1/2442:2443	Single bulged U homologous IL_7RQB_080	NA IL_83039.11*
79	IL_7K53_079	1/1/2070:2071, 1/1/2438:2441	Minor groove platform homologous IL_7RQB_081	NA IL_06437.11*
80	IL_7K53_080	1/1/2081:2083, 1/1/2236:2239	Isolated tHS basepair with bulges homologous IL_7RQB_082	NA IL_38958.6*
81	IL_7K53_081	1/1/2085:2087, 1/1/2232:2234	homologous IL_7RQB_083	NA IL_01312.13*
82	IL_7K53_082	1/1/2102:2105, 1/1/2184:2187	Tandem non-canonical cWW pairs geometric IL_5C5W_001	NA IL_85877.10*
83	IL_7K53_083	1/1/2105:2121, 1/1/2177:2184	NA	NA
84	IL_7K53_084	1/1/2202:2204, 1/1/2220:2221	Single bulged U geometric IL_5J7L_331	NA IL_21340.1*
85	IL_7K53_085	1/1/2350:2353, 1/1/2364:2367	Double sheared homologous IL_7RQB_089	NA IL_09705.7*
86	IL_7K53_086	1/1/2401:2403, 1/1/2414:2415	NA	NA
87	IL_7K53_087	1/1/2453:2454, 1/1/2498:2500	Single stack bend homologous IL_7RQB_091	NA IL_04038.4*
88	IL_7K53_088	1/1/2454:2455, 1/1/2496:2498	Major groove platform geometric IL_4V9F_082	NA IL_80663.10*
89	IL_7K53_089	1/1/2457:2459, 1/1/2493:2494	Major groove platform geometric IL_7A0S_085	NA IL_80663.10*
90	IL_7K53_090	1/1/2459:2461, 1/1/2489:2493	Major groove minor groove platform with extra cWW geometric IL_7A0S_086	NA IL_96042.4*
91	IL_7K53_091	1/1/2466:2470, 1/1/2480:2484	Triple sheared homologous IL_7RQB_095	NA IL_56467.6*
92	IL_7K53_092	1/1/2507:2508, 1/1/2580:2582	Major groove platform homologous IL_7RQB_096	NA IL_02060.4*
93	IL_7K53_093	1/1/2510:2512, 1/1/2574:2578	Isolated non-canonical cWW with bulges homologous IL_7RQB_097	NA IL_01312.13*
94	IL_7K53_094	1/1/2512:2513, 1/1/2571:2574	geometric IL_5J7L_341	NA IL_44093.1*
95	IL_7K53_095	1/1/2522:2523, 1/1/2540:2543	Minor groove platform with intercalation homologous IL_7RQB_099	NA IL_95601.1*
96	IL_7K53_096	1/1/2591:2592, 1/1/2601:2603	Single bulged A homologous IL_7RQB_101	NA IL_80007.16*
97	IL_7K53_097	1/1/2636:2640, 1/1/2774:2782	tSH-tHS-tHW homologous IL_7RQB_102	NA IL_34907.2*
98	IL_7K53_098	1/1/2652:2658, 1/1/2663:2668	Sarcin-Ricin target in LSU H95; G-bulge geometric IL_5J7L_346	NA IL_35110.5*
99	IL_7K53_099	1/1/2680:2684, 1/1/2725:2727	C-loop homologous IL_7RQB_104	NA IL_63596.4*
100	IL_7K53_100	1/1/2687:2691, 1/1/2718:2722	homologous IL_7RQB_105	NA IL_08296.3*
101	IL_7K53_101	1/1/2695:2696, 1/1/2711:2714	Multiple bulged bases homologous IL_7RQB_106	NA IL_77034.1*
102	IL_7K53_102	1/1/2737:2742, 1/1/2762:2767	UAA/GAN with extra cWW homologous IL_7RQB_107	NA IL_49767.4*
103	IL_7K53_103	1/1/2806:2811, 1/1/2889:2892	geometric IL_5J7L_351	NA IL_82988.1*
104	IL_7K53_104	1/1/2838:2839, 1/1/2878:2880	Single bulged C homologous IL_7RQB_108	NA IL_61258.10*
105	IL_7K53_105	1/1/2843:2846, 1/1/2870:2874	homologous IL_7RQB_109	NA IL_58764.1*
106	IL_7K53_106	1/1/2847:2852, 1/1/2865:2869	homologous IL_7RQB_110	NA IL_83162.3*
107	IL_7K53_107	1/2/17:18, 1/2/65:67	Major groove intercalation geometric IL_5J7L_355	NA IL_40508.4*
108	IL_7K53_108	1/2/23:28, 1/2/56:60	geometric IL_5J7L_356	NA IL_18472.1*
109	IL_7K53_109	1/2/30:31, 1/2/51:54	Major groove minor groove platform; mini C-loop geometric IL_7RQB_113	NA IL_09061.4*
110	IL_7K53_110	1/2/34:38, 1/2/44:48	Symmetric double minor groove platform geometric IL_5J7L_358	NA IL_58103.5*
111	IL_7K53_111	1/2/71:79, 1/2/97:105	Bacterial 5S Loop E geometric IL_5J7L_359	NA IL_56455.3*
112	IL_7K53_112	1/3/30:32, 1/3/552:553	NA	NA
113	IL_7K53_113	1/3/44:45, 1/3/396:398	NA	NA
114	IL_7K53_114	1/3/47:52, 1/3/359:361	NA	NA
115	IL_7K53_115	1/3/54:56, 1/3/356:357	NA	NA
116	IL_7K53_116	1/3/63:66, 1/3/103:104	NA	NA
117	IL_7K53_117	1/3/67:69, 1/3/99:102	NA	NA
118	IL_7K53_118	1/3/70:73, 1/3/97:98	NA	NA
119	IL_7K53_119	1/3/75:78, 1/3/91:95	NA	NA
120	IL_7K53_120	1/3/128:131, 1/3/231:233	NA	NA
121	IL_7K53_121	1/3/132:136, 1/3/227:230	NA	NA
122	IL_7K53_122	1/3/144:146, 1/3/176:178	NA	NA
123	IL_7K53_123	1/3/147:153, 1/3/168:175	NA	NA
124	IL_7K53_124	1/3/203:206, 1/3/213:214	NA	NA
125	IL_7K53_125	1/3/242:247, 1/3/277:284	NA	NA
126	IL_7K53_126	1/3/248:252, 1/3/274:276	NA	NA
127	IL_7K53_127	1/3/292:293, 1/3/304:308	NA	NA
128	IL_7K53_128	1/3/367:369, 1/3/392:393	NA	NA
129	IL_7K53_129	1/3/371:375, 1/3/389:390	NA	NA
130	IL_7K53_130	1/3/375:376, 1/3/387:389	NA	NA
131	IL_7K53_131	1/3/409:416, 1/3/427:433	NA	NA
132	IL_7K53_132	1/3/440:442, 1/3/492:497	NA	NA
133	IL_7K53_133	1/3/446:450, 1/3/483:488	NA	NA
134	IL_7K53_134	1/3/450:455, 1/3/477:483	NA	NA
135	IL_7K53_135	1/3/504:511, 1/3/540:541	NA	NA
136	IL_7K53_136	1/3/515:521, 1/3/528:536	NA	NA
137	IL_7K53_137	1/3/569:575, 1/3/880:881	NA	NA
138	IL_7K53_138	1/3/580:584, 1/3/757:761	NA	NA
139	IL_7K53_139	1/3/594:596, 1/3/644:645	NA	NA
140	IL_7K53_140	1/3/597:598, 1/3/640:643	NA	NA
141	IL_7K53_141	1/3/605:612, 1/3/628:633	NA	NA
142	IL_7K53_142	1/3/654:655, 1/3/751:754	NA	NA
143	IL_7K53_143	1/3/659:660, 1/3/745:747	NA	NA
144	IL_7K53_144	1/3/662:666, 1/3/740:743	NA	NA
145	IL_7K53_145	1/3/673:678, 1/3/712:717	NA	NA
146	IL_7K53_146	1/3/684:688, 1/3/699:706	NA	NA
147	IL_7K53_147	1/3/774:778, 1/3/804:805	NA	NA
148	IL_7K53_148	1/3/779:783, 1/3/799:803	NA	NA
149	IL_7K53_149	1/3/887:894, 1/3/905:910	NA	NA
150	IL_7K53_150	1/3/922:923, 1/3/1393:1395	NA	NA
151	IL_7K53_151	1/3/925:927, 1/3/1390:1391	NA	NA
152	IL_7K53_152	1/3/933:935, 1/3/1380:1384	NA	NA
153	IL_7K53_153	1/3/953:954, 1/3/1226:1228	NA	NA
154	IL_7K53_154	1/3/993:997, 1/3/1044:1045	NA	NA
155	IL_7K53_155	1/3/998:999, 1/3/1041:1043	NA	NA
156	IL_7K53_156	1/3/1003:1006, 1/3/1023:1037	NA	NA
157	IL_7K53_157	1/3/1048:1050, 1/3/1208:1209	NA	NA
158	IL_7K53_158	1/3/1051:1056, 1/3/1204:1207	NA	NA
159	IL_7K53_159	1/3/1057:1058, 1/3/1199:1203	NA	NA
160	IL_7K53_160	1/3/1060:1061, 1/3/1195:1197	NA	NA
161	IL_7K53_161	1/3/1061:1063, 1/3/1193:1195	NA	NA
162	IL_7K53_162	1/3/1124:1128, 1/3/1144:1149	NA	NA
163	IL_7K53_163	1/3/1129:1132, 1/3/1142:1143	NA	NA
164	IL_7K53_164	1/3/1158:1161, 1/3/1175:1181	NA	NA
165	IL_7K53_165	1/3/1247:1253, 1/3/1284:1290	NA	NA
166	IL_7K53_166	1/3/1255:1258, 1/3/1277:1282	NA	NA
167	IL_7K53_167	1/3/1259:1263, 1/3/1272:1276	NA	NA
168	IL_7K53_168	1/3/1303:1308, 1/3/1329:1334	NA	NA
169	IL_7K53_169	1/3/1399:1401, 1/3/1501:1504	NA	NA
170	IL_7K53_170	1/3/1401:1404, 1/3/1497:1501	NA	NA
171	IL_7K53_171	1/3/1405:1407, 1/3/1494:1496	NA	NA
172	IL_7K53_172	1/3/1407:1409, 1/3/1491:1494	NA	NA
173	IL_7K53_173	1/3/1412:1414, 1/3/1486:1488	NA	NA
174	IL_7K53_174	1/3/1416:1419, 1/3/1481:1484	NA	NA
175	IL_7K53_175	1/3/1430:1435, 1/3/1466:1470	NA	NA
176	IL_7K53_176	1/3/1440:1442, 1/3/1460:1461	NA	NA
177	IL_7K53_177	1/3/1445:1448, 1/3/1455:1457	NA	NA

Problematic loops

No problematic loops

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	J3_7K53_001	1/1/30:31, 1/1/474:481, 1/1/509:510	NA	NA
2	J3_7K53_002	1/1/56:57, 1/1/70:76, 1/1/110:114	homologous J3_7RQB_002	NA
3	J3_7K53_003	1/1/683:689, 1/1/773:775, 1/1/791:794	NA	NA
4	J3_7K53_004	1/1/698:700, 1/1/732:736, 1/1/760:763	NA	NA
5	J3_7K53_005	1/1/1055:1057, 1/1/1081:1087, 1/1/1102:1104	NA	NA
6	J3_7K53_006	1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642	homologous J3_7RQB_007	NA
7	J3_7K53_007	1/1/1306:1309, 1/1/1605:1611, 1/1/1620:1622	homologous J3_7RQB_008	NA
8	J3_7K53_008	1/1/1344:1349, 1/1/1382:1385, 1/1/1402:1403	NA	NA
9	J3_7K53_009	1/1/2091:2093, 1/1/2196:2200, 1/1/2223:2228	homologous J3_7RQB_010	NA
10	J3_7K53_010	1/1/2295:2299, 1/1/2317:2323, 1/1/2332:2337	NA	NA
11	J3_7K53_011	1/1/2517:2520, 1/1/2545:2547, 1/1/2561:2567	homologous J3_7RQB_012	NA
12	J3_7K53_012	1/1/2789:2791, 1/1/2805:2806, 1/1/2892:2894	NA	NA
13	J3_7K53_013	1/1/2812:2815, 1/1/2831:2836, 1/1/2882:2888	NA	NA
14	J3_7K53_014	1/2/10:16, 1/2/68:70, 1/2/106:110	NA	NA
15	J3_7K53_015	1/3/46:47, 1/3/361:367, 1/3/393:395	NA	NA
16	J3_7K53_016	1/3/586:588, 1/3/651:654, 1/3/754:755	NA	NA
17	J3_7K53_017	1/3/672:673, 1/3/717:725, 1/3/732:734	NA	NA
18	J3_7K53_018	1/3/826:829, 1/3/857:861, 1/3/868:874	NA	NA
19	J3_7K53_019	1/3/936:939, 1/3/1344:1350, 1/3/1372:1379	NA	NA
20	J3_7K53_020	1/3/943:946, 1/3/1235:1237, 1/3/1337:1340	NA	NA
21	J3_7K53_021	1/3/955:962, 1/3/973:984, 1/3/1221:1225	NA	NA
22	J3_7K53_022	1/3/990:993, 1/3/1045:1047, 1/3/1210:1215	NA	NA
23	J3_7K53_023	1/3/1063:1068, 1/3/1107:1113, 1/3/1187:1193	NA	NA
24	J3_7K53_024	1/3/1073:1074, 1/3/1083:1087, 1/3/1098:1102	NA	NA
25	J3_7K53_025	1/3/1116:1118, 1/3/1155:1158, 1/3/1181:1184	NA	NA
26	J3_7K53_026	1/3/1237:1241, 1/3/1296:1303, 1/3/1334:1337	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

7K53 Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops