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3U5H Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

#loop idlocationannotation
(mapped to, source)		motif group
(similar to)
1/5/38:45NANA
1/5/69:74NANA
1/5/90:96NANA
1/5/132:136NANA
1/5/194:201NANA
1/5/208:212NANA
1/5/216:224NANA
1/5/278:287NANA
1/5/303:312NANA
1/5/357:362NANA
1/5/382:387NANA
1/5/543:548NANA
1/5/599:604NANA
1/5/640:649NANA
1/5/686:694NANA
1/5/707:712NANA
1/5/732:737NANA
1/5/763:768NANA
1/5/844:849NANA
1/5/876:885NANA
1/5/910:918NANA
1/5/958:963NANA
1/5/1076:1083NANA
1/5/1126:1132NANA
1/5/1148:1155NANA
1/5/1403:1408NANA
1/5/1462:1470NANA
1/5/1506:1512NANA
1/5/1544:1549NANA
1/5/1599:1608NANA
1/5/1634:1639NANA
1/5/1680:1688NANA
1/5/1719:1725NANA
1/5/1792:1796NANA
1/5/1844:1851NANA
1/5/1862:1868NANA
1/5/1923:1928NANA
1/5/2110:2114NANA
1/5/2135:2145NANA
1/5/2164:2170NANA
1/5/2220:2225NANA
1/5/2253:2263NANA
1/5/2292:2300NANA
1/5/2369:2378NANA
1/5/2534:2545NANA
1/5/2568:2573NANA
1/5/2616:2624NANA
1/5/2633:2645NANA
1/5/2673:2681NANA
1/5/2693:2700NANA
1/5/2724:2732NANA
1/5/2744:2749NANA
1/5/2776:2784NANA
1/5/2840:2848NANA
1/5/2897:2904NANA
1/5/2920:2926NANA
1/5/2963:2968NANA
1/5/3025:3030NANA
1/5/3068:3073NANA
1/5/3110:3124NANA
1/5/3194:3197NANA
1/5/3240:3247NANA
1/5/3303:3311NANA
1/5/3350:3353NANA
1/7/36:41NANA
1/7/88:93NANA
1/8/69:89NANA
1/8/108:114NANA
1/8/124:129NANA

Problematic loops

#loop idProblemSequence
HL_3U5H_023NA
HL_3U5H_027NA
HL_3U5H_028NA
HL_3U5H_029NA
HL_3U5H_034NA
HL_3U5H_039NA
HL_3U5H_044NA
HL_3U5H_052NA

Valid loops

#loop idlocationannotation
(mapped to, source)		motif group
(similar to)
1/5/7:8,
1/8/150:152		NANA
1/5/13:15,
1/8/144:145		NANA
1/5/27:28,
1/5/56:58		NANA
1/5/31:38,
1/5/45:53		NANA
1/5/82:89,
1/5/97:103		NANA
1/5/123:124,
1/5/144:149		NANA
1/5/125:127,
1/5/141:143		NANA
1/5/163:165,
1/5/257:258		NANA
1/5/169:174,
1/5/244:253		NANA
1/5/177:179,
1/5/237:241		NANA
1/5/189:191,
1/5/204:205		NANA
1/5/337:339,
1/8/25:26		NANA
1/5/376:379,
1/5/390:403		NANA
1/5/404:410,
1/8/13:19		NANA
1/5/429:431,
1/5/628:630		NANA
1/5/512:513,
1/5/577:579		NANA
1/5/517:525,
1/5/567:573		NANA
1/5/531:538,
1/5/553:561		NANA
1/5/668:670,
1/5/792:794		NANA
1/5/680:684,
1/5/696:700		NANA
1/5/725:728,
1/5/741:745		NANA
1/5/752:753,
1/5/779:781		NANA
1/5/755:756,
1/5/775:777		NANA
1/5/758:763,
1/5/768:773		NANA
1/5/803:805,
1/5/938:940		NANA
1/5/805:809,
1/5/931:938		NANA
1/5/828:829,
1/5/895:897		NANA
1/5/833:834,
1/5/859:861		NANA
1/5/834:838,
1/5/855:859		NANA
1/5/869:872,
1/5/888:890		NANA
1/5/873:875,
1/5/886:887		NANA
1/5/907:909,
1/5/919:923		NANA
1/5/954:956,
1/5/965:967		NANA
1/5/969:970,
1/5/1111:1113		NANA
1/5/977:982,
1/5/1101:1104		NANA
1/5/983:985,
1/5/1099:1100		NANA
1/5/991:997,
1/5/1052:1058		NANA
1/5/997:998,
1/5/1050:1052		NANA
1/5/999:1004,
1/5/1046:1049		NANA
1/5/1006:1009,
1/5/1041:1044		NANA
1/5/1009:1011,
1/5/1039:1041		NANA
1/5/1015:1018,
1/5/1034:1035		NANA
1/5/1069:1071,
1/5/1087:1089		NANA
1/5/1074:1076,
1/5/1083:1084		NANA
1/5/1120:1122,
1/5/1136:1138		NANA
1/5/1123:1125,
1/5/1133:1135		NANA
1/5/1167:1171,
1/5/1328:1332		NANA
1/5/1173:1180,
1/5/1325:1326		NANA
1/5/1180:1182,
1/5/1324:1325		NANA
1/5/1187:1194,
1/5/1314:1319		NANA
1/5/1194:1205,
1/5/1299:1314		NANA
1/5/1207:1209,
1/5/1296:1297		NANA
1/5/1376:1378,
1/5/1428:1431		NANA
1/5/1385:1387,
1/5/1420:1421		NANA
1/5/1388:1395,
1/5/1415:1419		NANA
1/5/1398:1400,
1/5/1411:1412		NANA
1/5/1444:1450,
1/5/2354:2359		NANA
1/5/1492:1495,
1/5/1835:1836		NANA
1/5/1500:1505,
1/5/1513:1516		NANA
1/5/1532:1536,
1/5/1585:1590		NANA
1/5/1618:1621,
1/5/1824:1826		NANA
1/5/1623:1625,
1/5/1818:1822		NANA
1/5/1627:1631,
1/5/1811:1816		NANA
1/5/1645:1649,
1/5/1806:1810		NANA
1/5/1661:1663,
1/5/1786:1788		NANA
1/5/1669:1670,
1/5/1778:1780		NANA
1/5/1670:1671,
1/5/1776:1778		NANA
1/5/1694:1698,
1/5/1747:1752		NANA
1/5/1702:1707,
1/5/1737:1743		NANA
1/5/1711:1717,
1/5/1727:1733		NANA
1/5/1883:1889,
1/5/2346:2349		NANA
1/5/1895:1897,
1/5/2338:2340		NANA
1/5/1898:1901,
1/5/2336:2337		NANA
1/5/1901:1906,
1/5/2333:2336		NANA
1/5/1918:1923,
1/5/1928:1934		NANA
1/5/1940:1942,
1/5/2106:2108		NANA
1/5/1947:1948,
1/5/2098:2101		NANA
1/5/2128:2129,
1/5/2323:2325		NANA
1/5/2156:2161,
1/5/2173:2180		NANA
1/5/2196:2199,
1/5/2245:2246		NANA
1/5/2200:2201,
1/5/2241:2244		NANA
1/5/2204:2206,
1/5/2237:2238		NANA
1/5/2276:2277,
1/5/2307:2310		NANA
1/5/2277:2288,
1/5/2304:2307		NANA
1/5/2391:2394,
1/5/2986:2988		NANA
1/5/2396:2398,
1/5/2981:2984		NANA
1/5/2409:2411,
1/5/2811:2812		NANA
1/5/2412:2413,
1/5/2807:2810		NANA
1/5/2423:2425,
1/5/2604:2607		NANA
1/5/2520:2526,
1/5/2584:2587		NANA
1/5/2614:2615,
1/5/2625:2627		NANA
1/5/2666:2668,
1/5/2686:2690		NANA
1/5/2714:2716,
1/5/2740:2741		NANA
1/5/2718:2721,
1/5/2735:2738		NANA
1/5/2770:2773,
1/5/2787:2788		NANA
1/5/2823:2824,
1/5/2865:2867		NANA
1/5/2824:2826,
1/5/2863:2865		NANA
1/5/2826:2828,
1/5/2862:2863		NANA
1/5/2828:2830,
1/5/2858:2862		NANA
1/5/2835:2839,
1/5/2849:2853		NANA
1/5/2876:2877,
1/5/2949:2951		NANA
1/5/2879:2881,
1/5/2943:2947		NANA
1/5/2881:2882,
1/5/2940:2943		NANA
1/5/2889:2891,
1/5/2912:2914		NANA
1/5/2891:2892,
1/5/2909:2912		NANA
1/5/2918:2920,
1/5/2926:2928		NANA
1/5/2960:2961,
1/5/2970:2972		NANA
1/5/3004:3007,
1/5/3139:3144		NANA
1/5/3012:3014,
1/5/3040:3042		NANA
1/5/3018:3025,
1/5/3030:3036		NANA
1/5/3047:3051,
1/5/3091:3094		NANA
1/5/3054:3059,
1/5/3084:3088		NANA
1/5/3063:3064,
1/5/3077:3080		NANA
1/5/3103:3107,
1/5/3127:3131		NANA
1/5/3161:3166,
1/5/3284:3289		NANA
1/5/3168:3170,
1/5/3280:3282		NANA
1/5/3177:3179,
1/5/3210:3211		NANA
1/5/3179:3188,
1/5/3204:3210		NANA
1/5/3193:3194,
1/5/3197:3199		NANA
1/5/3225:3229,
1/5/3258:3260		NANA
1/5/3233:3235,
1/5/3252:3254		NANA
1/5/3235:3238,
1/5/3249:3252		NANA
1/5/3300:3303,
1/5/3311:3314		NANA
1/5/3318:3320,
1/5/3387:3388		NANA
1/5/3324:3325,
1/5/3381:3383		NANA
1/5/3328:3330,
1/5/3373:3378		NANA
1/5/3332:3337,
1/5/3367:3371		NANA
1/5/3340:3342,
1/5/3363:3364		NANA
1/5/3342:3345,
1/5/3360:3363		NANA
1/5/3349:3350,
1/5/3353:3356		NANA
1/7/15:16,
1/7/63:65		NANA
1/7/21:27,
1/7/53:58		NANA
1/7/28:29,
1/7/49:52		NANA
1/7/29:30,
1/7/47:49		NANA
1/7/32:36,
1/7/41:45		NANA
1/7/72:80,
1/7/100:106		NANA
1/7/84:87,
1/7/94:96		NANA
1/8/44:64,
1/8/96:100		NANA
1/8/64:66,
1/8/93:96		NANA
1/8/68:69,
1/8/89:91		NANA

Problematic loops

#loop idProblemSequence
IL_3U5H_018NA
IL_3U5H_059NA
IL_3U5H_060NA
IL_3U5H_061NA

Valid loops

#loop idlocationannotation
(mapped to, source)		motif group
(similar to)
1/5/113:123,
1/5/149:158,
1/5/263:267		NANA
1/5/814:820,
1/5/905:907,
1/5/923:926		NANA
1/5/829:831,
1/5/863:867,
1/5/892:895		NANA
1/5/1479:1485,
1/5/1857:1859,
1/5/1871:1874		NANA
1/5/1488:1491,
1/5/1837:1843,
1/5/1852:1854		NANA
1/5/2432:2435,
1/5/2512:2517,
1/5/2590:2597		NANA
1/5/2529:2532,
1/5/2547:2563,
1/5/2578:2581		NANA
1/5/2664:2666,
1/5/2690:2692,
1/5/2701:2706		NANA
1/5/2886:2889,
1/5/2914:2916,
1/5/2930:2936		NANA
1/5/3298:3300,
1/5/3314:3318,
1/5/3388:3390		NANA

Problematic loops

#loop idProblemSequence
J3_3U5H_004NA

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