3U5H Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3U5H_001 | 1/5/38:45 | No text annotation Not in a motif group | geometric HL_5TBW_001 HL_06192.2 | |
| HL_3U5H_002 | 1/5/69:74 | No text annotation Not in a motif group | geometric HL_5TBW_002 HL_02862.2 | |
| HL_3U5H_003 | 1/5/90:96 | No text annotation Not in a motif group | geometric HL_5TBW_003 HL_67216.7 | |
| HL_3U5H_004 | 1/5/132:136 | No text annotation Not in a motif group | geometric HL_5TBW_004 HL_98426.1 | |
| HL_3U5H_005 | 1/5/194:201 | T-loop with 1 bulged base Not in a motif group | geometric HL_5TBW_005 HL_89380.2 | |
| HL_3U5H_006 | 1/5/208:212 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_3U5H_007 | 1/5/216:224 | No text annotation Not in a motif group | geometric HL_5TBW_007 HL_08002.8 | |
| HL_3U5H_008 | 1/5/278:287 | No text annotation Not in a motif group | geometric HL_5TBW_008 HL_71554.2 | |
| HL_3U5H_009 | 1/5/303:312 | No text annotation Not in a motif group | geometric HL_5TBW_009 HL_12078.2 | |
| HL_3U5H_010 | 1/5/357:362 | Other HL Not in a motif group | geometric HL_5TBW_010 HL_42097.1 | |
| HL_3U5H_011 | 1/5/382:387 | GNRA Not in a motif group | geometric HL_5TBW_011 HL_42097.1 | |
| HL_3U5H_012 | 1/5/543:548 | No text annotation Not in a motif group | geometric HL_2IZN_001 HL_97896.2 | |
| HL_3U5H_013 | 1/5/599:604 | GNRA Not in a motif group | geometric HL_5TBW_013 HL_42097.1 | |
| HL_3U5H_014 | 1/5/640:649 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5TBW_014 HL_89380.2 | |
| HL_3U5H_015 | 1/5/686:694 | No text annotation Not in a motif group | geometric HL_5TBW_015 HL_03345.1 | |
| HL_3U5H_016 | 1/5/707:712 | GNRA Not in a motif group | geometric HL_5TBW_016 HL_42097.1 | |
| HL_3U5H_017 | 1/5/732:737 | GNRA Not in a motif group | geometric HL_5TBW_019 HL_42097.1 | |
| HL_3U5H_018 | 1/5/763:768 | No text annotation Not in a motif group | geometric HL_5TBW_018 HL_34168.2 | |
| HL_3U5H_019 | 1/5/844:849 | GNRA Not in a motif group | geometric HL_5B2P_001 HL_42097.1 | |
| HL_3U5H_020 | 1/5/876:885 | No text annotation Not in a motif group | geometric HL_5TBW_020 HL_39334.6 | |
| HL_3U5H_021 | 1/5/910:918 | No text annotation Not in a motif group | geometric HL_5TBW_021 HL_33817.1 | |
| HL_3U5H_022 | 1/5/958:963 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_3U5H_024 | 1/5/1076:1083 | No text annotation Not in a motif group | geometric HL_5TBW_024 HL_71554.2 | |
| HL_3U5H_025 | 1/5/1126:1132 | GNRA Not in a motif group | geometric HL_5TBW_025 HL_42097.1 | |
| HL_3U5H_026 | 1/5/1148:1155 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_3U5H_030 | 1/5/1403:1408 | GNRA Not in a motif group | geometric HL_5TBW_030 HL_42097.1 | |
| HL_3U5H_031 | 1/5/1462:1470 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5TBW_031 HL_89380.2 | |
| HL_3U5H_032 | 1/5/1506:1512 | No text annotation Not in a motif group | geometric HL_5TBW_032 HL_46680.1 | |
| HL_3U5H_033 | 1/5/1544:1549 | Other HL Not in a motif group | geometric HL_5TBW_033 HL_76539.2 | |
| HL_3U5H_035 | 1/5/1599:1608 | No text annotation Not in a motif group | geometric HL_5TBW_035 HL_69023.2 | |
| HL_3U5H_036 | 1/5/1634:1639 | GNRA Not in a motif group | geometric HL_5TBW_036 HL_42097.1 | |
| HL_3U5H_037 | 1/5/1680:1688 | No text annotation Not in a motif group | geometric HL_5TBW_037 HL_60812.1 | |
| HL_3U5H_038 | 1/5/1719:1725 | No text annotation Not in a motif group | geometric HL_5TBW_038 HL_86373.2 | |
| HL_3U5H_040 | 1/5/1792:1796 | No text annotation Not in a motif group | geometric HL_5TBW_040 HL_38927.2 | |
| HL_3U5H_041 | 1/5/1844:1851 | No text annotation Not in a motif group | geometric HL_5TBW_041 HL_64430.2 | |
| HL_3U5H_042 | 1/5/1862:1868 | GNRA with one bulged base Not in a motif group | geometric HL_5TBW_042 HL_42097.1 | |
| HL_3U5H_043 | 1/5/1923:1928 | UNCG Not in a motif group | geometric HL_5TBW_043 HL_03562.2 | |
| HL_3U5H_045 | 1/5/2110:2114 | No text annotation Not in a motif group | geometric HL_5TBW_045 HL_20062.1 | |
| HL_3U5H_046 | 1/5/2135:2145 | No text annotation Not in a motif group | geometric HL_5TBW_046 HL_43613.5 | |
| HL_3U5H_047 | 1/5/2164:2170 | GNRA Not in a motif group | geometric HL_5TBW_047 HL_42097.1 | |
| HL_3U5H_048 | 1/5/2220:2225 | Other HL Not in a motif group | geometric HL_5TBW_048 HL_42097.1 | |
| HL_3U5H_049 | 1/5/2253:2263 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_3U5H_050 | 1/5/2292:2300 | No text annotation Not in a motif group | geometric HL_5TBW_050 HL_51824.1 | |
| HL_3U5H_051 | 1/5/2369:2378 | No text annotation Not in a motif group | geometric HL_5TBW_051 HL_90642.6 | |
| HL_3U5H_053 | 1/5/2534:2545 | No text annotation Not in a motif group | ||
| HL_3U5H_054 | 1/5/2568:2573 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_3U5H_055 | 1/5/2616:2624 | No text annotation Not in a motif group | geometric HL_5TBW_054 HL_53171.2 | |
| HL_3U5H_056 | 1/5/2633:2645 | No text annotation Not in a motif group | geometric HL_5TBW_055 HL_19870.6 | |
| HL_3U5H_057 | 1/5/2673:2681 | No text annotation Not in a motif group | geometric HL_5TBW_056 HL_76406.4 | |
| HL_3U5H_058 | 1/5/2693:2700 | No text annotation Not in a motif group | geometric HL_5TBW_057 HL_12078.2 | |
| HL_3U5H_059 | 1/5/2724:2732 | No text annotation Not in a motif group | geometric HL_5TBW_058 HL_92229.2 | |
| HL_3U5H_060 | 1/5/2744:2749 | GNRA Not in a motif group | geometric HL_5TBW_059 HL_42097.1 | |
| HL_3U5H_061 | 1/5/2776:2784 | No text annotation Not in a motif group | geometric HL_5TBW_060 HL_96598.1 | |
| HL_3U5H_062 | 1/5/2840:2848 | No text annotation Not in a motif group | geometric HL_5TBW_061 HL_06192.2 | |
| HL_3U5H_063 | 1/5/2897:2904 | No text annotation Not in a motif group | geometric HL_5TBW_062 HL_88526.2 | |
| HL_3U5H_064 | 1/5/2920:2926 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_43656.2 | |
| HL_3U5H_065 | 1/5/2963:2968 | GNRA Not in a motif group | geometric HL_4V9F_065 HL_42097.1 | |
| HL_3U5H_066 | 1/5/3025:3030 | GNRA Not in a motif group | geometric HL_5TBW_065 HL_42097.1 | |
| HL_3U5H_067 | 1/5/3068:3073 | Ribsomal LSU H95 Not in a motif group | geometric HL_5TBW_066 HL_46680.1 | |
| HL_3U5H_068 | 1/5/3110:3124 | No text annotation Not in a motif group | geometric HL_5TBW_067 HL_56677.7 | |
| HL_3U5H_069 | 1/5/3194:3197 | No text annotation Not in a motif group | geometric HL_4L8H_001 HL_53837.1 | |
| HL_3U5H_070 | 1/5/3240:3247 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_3U5H_071 | 1/5/3303:3311 | No text annotation Not in a motif group | geometric HL_5TBW_070 HL_27930.1 | |
| HL_3U5H_072 | 1/5/3350:3353 | No text annotation Not in a motif group | geometric HL_4L8H_001 HL_53837.1 | |
| HL_3U5H_073 | 1/7/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_3U5H_074 | 1/7/88:93 | GNRA Not in a motif group | geometric HL_5TBW_186 HL_42097.1 | |
| HL_3U5H_075 | 1/8/69:89 | No text annotation Not in a motif group | ||
| HL_3U5H_076 | 1/8/108:114 | No text annotation Not in a motif group | geometric HL_5TBW_075 HL_87939.1 | |
| HL_3U5H_077 | 1/8/124:129 | No text annotation Not in a motif group | geometric HL_5TBW_076 HL_96851.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3U5H_023 | No text annotation | ||
| HL_3U5H_027 | No text annotation | ||
| HL_3U5H_028 | No text annotation | ||
| HL_3U5H_029 | No text annotation | ||
| HL_3U5H_034 | No text annotation | ||
| HL_3U5H_039 | GNRA | ||
| HL_3U5H_044 | No text annotation | ||
| HL_3U5H_052 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3U5H_002 | 1/5/7:8, 1/8/150:152 | Single bulged C Not in a motif group | geometric IL_5TBW_002 IL_61258.12 | |
| IL_3U5H_003 | 1/5/13:15, 1/8/144:145 | Single bulged U Not in a motif group | geometric IL_5TBW_003 IL_83039.13 | |
| IL_3U5H_004 | 1/5/27:28, 1/5/56:58 | Single stack bend Not in a motif group | geometric IL_5TBW_004 IL_76488.2 | |
| IL_3U5H_005 | 1/5/31:38, 1/5/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_3U5H_006 | 1/5/82:89, 1/5/97:103 | No text annotation Not in a motif group | geometric IL_5TBW_006 IL_88613.1 | |
| IL_3U5H_007 | 1/5/123:124, 1/5/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_3U5H_008 | 1/5/125:127, 1/5/141:143 | No text annotation Not in a motif group | geometric IL_5TBW_008 IL_95997.1 | |
| IL_3U5H_009 | 1/5/163:165, 1/5/257:258 | Single stack bend Not in a motif group | geometric IL_5TBW_009 IL_76488.2 | |
| IL_3U5H_011 | 1/5/169:174, 1/5/244:253 | No text annotation Not in a motif group | ||
| IL_3U5H_012 | 1/5/177:179, 1/5/237:241 | Major groove platform with extra pair Not in a motif group | geometric IL_5TBW_011 IL_63450.2 | |
| IL_3U5H_013 | 1/5/189:191, 1/5/204:205 | Single bulged U Not in a motif group | geometric IL_5TBW_012 IL_83039.13 | |
| IL_3U5H_014 | 1/5/337:339, 1/8/25:26 | Single bulged A Not in a motif group | geometric IL_5TBW_013 IL_37497.2 | |
| IL_3U5H_015 | 1/5/376:379, 1/5/390:403 | No text annotation Not in a motif group | geometric IL_5TBW_014 IL_60992.6 | |
| IL_3U5H_016 | 1/5/404:410, 1/8/13:19 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5TBW_015 IL_66414.6 | |
| IL_3U5H_017 | 1/5/429:431, 1/5/628:630 | No text annotation Not in a motif group | geometric IL_5TBW_016 IL_51629.2 | |
| IL_3U5H_019 | 1/5/512:513, 1/5/577:579 | Single bulged A Not in a motif group | geometric IL_5TBW_018 IL_37497.2 | |
| IL_3U5H_020 | 1/5/517:525, 1/5/567:573 | No text annotation Not in a motif group | geometric IL_5TBW_019 IL_23992.1 | |
| IL_3U5H_021 | 1/5/531:538, 1/5/553:561 | No text annotation Not in a motif group | geometric IL_5TBW_020 IL_07703.1 | |
| IL_3U5H_022 | 1/5/668:670, 1/5/792:794 | No text annotation Not in a motif group | geometric IL_5TBW_021 IL_95997.1 | |
| IL_3U5H_023 | 1/5/680:684, 1/5/696:700 | No text annotation Not in a motif group | geometric IL_5TBW_022 IL_74284.1 | |
| IL_3U5H_024 | 1/5/725:728, 1/5/741:745 | UAA/GAN Not in a motif group | geometric IL_5TBW_023 IL_07235.1 | |
| IL_3U5H_025 | 1/5/752:753, 1/5/779:781 | Single bulged A Not in a motif group | geometric IL_5TBW_024 IL_37497.2 | |
| IL_3U5H_026 | 1/5/755:756, 1/5/775:777 | Single bulged U Not in a motif group | geometric IL_5TBW_025 IL_83039.13 | |
| IL_3U5H_027 | 1/5/758:763, 1/5/768:773 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.2 | |
| IL_3U5H_028 | 1/5/803:805, 1/5/938:940 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_95997.1 | |
| IL_3U5H_029 | 1/5/805:809, 1/5/931:938 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
| IL_3U5H_030 | 1/5/828:829, 1/5/895:897 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.2 | |
| IL_3U5H_031 | 1/5/833:834, 1/5/859:861 | Single bulged G Not in a motif group | geometric IL_5TBW_029 IL_00225.2 | |
| IL_3U5H_032 | 1/5/834:838, 1/5/855:859 | Triple sheared Not in a motif group | geometric IL_5J7L_263 IL_56467.8 | |
| IL_3U5H_033 | 1/5/869:872, 1/5/888:890 | Major groove platform with extra cWW Not in a motif group | geometric IL_5TBW_031 IL_05564.2 | |
| IL_3U5H_034 | 1/5/873:875, 1/5/886:887 | Single bulged U Not in a motif group | geometric IL_5TBW_032 IL_83039.13 | |
| IL_3U5H_035 | 1/5/907:909, 1/5/919:923 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.6 | |
| IL_3U5H_036 | 1/5/954:956, 1/5/965:967 | No text annotation Not in a motif group | geometric IL_5TBW_034 IL_95997.1 | |
| IL_3U5H_037 | 1/5/969:970, 1/5/1111:1113 | Single stack bend Not in a motif group | geometric IL_5TBW_035 IL_76488.2 | |
| IL_3U5H_038 | 1/5/977:982, 1/5/1101:1104 | No text annotation Not in a motif group | ||
| IL_3U5H_039 | 1/5/983:985, 1/5/1099:1100 | Single bulged G Not in a motif group | geometric IL_5TBW_037 IL_00225.2 | |
| IL_3U5H_040 | 1/5/991:997, 1/5/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5TBW_038 IL_93830.3 | |
| IL_3U5H_041 | 1/5/997:998, 1/5/1050:1052 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_42622.2 | |
| IL_3U5H_042 | 1/5/999:1004, 1/5/1046:1049 | C-loop Not in a motif group | geometric IL_5TBW_040 IL_02509.1 | |
| IL_3U5H_043 | 1/5/1006:1009, 1/5/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_3U5H_044 | 1/5/1009:1011, 1/5/1039:1041 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_3U5H_046 | 1/5/1015:1018, 1/5/1034:1035 | Multiple bulged bases Not in a motif group | geometric IL_4LFB_005 IL_76389.1 | |
| IL_3U5H_049 | 1/5/1069:1071, 1/5/1087:1089 | No text annotation Not in a motif group | geometric IL_5TBW_044 IL_95997.1 | |
| IL_3U5H_050 | 1/5/1074:1076, 1/5/1083:1084 | Single bulged A Not in a motif group | geometric IL_5TBW_045 IL_37497.2 | |
| IL_3U5H_051 | 1/5/1120:1122, 1/5/1136:1138 | No text annotation Not in a motif group | geometric IL_5TBW_046 IL_95997.1 | |
| IL_3U5H_052 | 1/5/1123:1125, 1/5/1133:1135 | Isolated cWS basepair Not in a motif group | geometric IL_5TBW_047 IL_52767.2 | |
| IL_3U5H_053 | 1/5/1167:1171, 1/5/1328:1332 | UAA/GAN Not in a motif group | geometric IL_5TBW_048 IL_89002.2 | |
| IL_3U5H_054 | 1/5/1173:1180, 1/5/1325:1326 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5TBW_049 IL_15861.7 | |
| IL_3U5H_055 | 1/5/1180:1182, 1/5/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.13 | |
| IL_3U5H_056 | 1/5/1187:1194, 1/5/1314:1319 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_3U5H_057 | 1/5/1194:1205, 1/5/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_3U5H_058 | 1/5/1207:1209, 1/5/1296:1297 | Single bulged U Not in a motif group | geometric IL_5TBW_053 IL_83039.13 | |
| IL_3U5H_062 | 1/5/1376:1378, 1/5/1428:1431 | Isolated cWS basepair Not in a motif group | geometric IL_5TBW_057 IL_52767.2 | |
| IL_3U5H_063 | 1/5/1385:1387, 1/5/1420:1421 | Single bulged A Not in a motif group | geometric IL_5TBW_058 IL_37497.2 | |
| IL_3U5H_064 | 1/5/1388:1395, 1/5/1415:1419 | Kink-turn Not in a motif group | geometric IL_5TBW_059 IL_70923.2 | |
| IL_3U5H_065 | 1/5/1398:1400, 1/5/1411:1412 | Single bulged A Not in a motif group | geometric IL_5TBW_060 IL_37497.2 | |
| IL_3U5H_066 | 1/5/1444:1450, 1/5/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_061 IL_76042.2 | |
| IL_3U5H_067 | 1/5/1492:1495, 1/5/1835:1836 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_050 IL_50694.2 | |
| IL_3U5H_068 | 1/5/1500:1505, 1/5/1513:1516 | No text annotation Not in a motif group | geometric IL_5TBW_062 IL_93630.2 | |
| IL_3U5H_069 | 1/5/1532:1536, 1/5/1585:1590 | UAA/GAN Not in a motif group | geometric IL_5TBW_063 IL_89002.2 | |
| IL_3U5H_071 | 1/5/1618:1621, 1/5/1824:1826 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_84698.1 | |
| IL_3U5H_072 | 1/5/1623:1625, 1/5/1818:1822 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_3U5H_074 | 1/5/1627:1631, 1/5/1811:1816 | No text annotation Not in a motif group | geometric IL_5TBW_066 IL_48431.1 | |
| IL_3U5H_075 | 1/5/1645:1649, 1/5/1806:1810 | Triple sheared Not in a motif group | geometric IL_5TBW_067 IL_56467.8 | |
| IL_3U5H_076 | 1/5/1661:1663, 1/5/1786:1788 | No text annotation Not in a motif group | geometric IL_5TBW_068 IL_95997.1 | |
| IL_3U5H_077 | 1/5/1669:1670, 1/5/1778:1780 | Single bulged C Not in a motif group | geometric IL_5TBW_069 IL_61258.12 | |
| IL_3U5H_078 | 1/5/1670:1671, 1/5/1776:1778 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_3U5H_079 | 1/5/1694:1698, 1/5/1747:1752 | No text annotation Not in a motif group | geometric IL_5TBW_071 IL_69313.1 | |
| IL_3U5H_080 | 1/5/1702:1707, 1/5/1737:1743 | No text annotation Not in a motif group | geometric IL_5TBW_072 IL_39753.1 | |
| IL_3U5H_081 | 1/5/1711:1717, 1/5/1727:1733 | Kink-turn Not in a motif group | geometric IL_5TBW_073 IL_60192.2 | |
| IL_3U5H_082 | 1/5/1883:1889, 1/5/2346:2349 | No text annotation Not in a motif group | geometric IL_5TBW_074 IL_49460.2 | |
| IL_3U5H_083 | 1/5/1895:1897, 1/5/2338:2340 | Isolated tWW turn Not in a motif group | geometric IL_4V9F_060 IL_54997.7 | |
| IL_3U5H_084 | 1/5/1898:1901, 1/5/2336:2337 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_3U5H_085 | 1/5/1901:1906, 1/5/2333:2336 | Intercalated tWH Not in a motif group | geometric IL_5TBW_077 IL_82842.2 | |
| IL_3U5H_086 | 1/5/1918:1923, 1/5/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5TBW_078 IL_65969.2 | |
| IL_3U5H_087 | 1/5/1940:1942, 1/5/2106:2108 | No text annotation Not in a motif group | geometric IL_5TBW_079 IL_95997.1 | |
| IL_3U5H_088 | 1/5/1947:1948, 1/5/2098:2101 | No text annotation Not in a motif group | geometric IL_5TBW_080 IL_74125.1 | |
| IL_3U5H_089 | 1/5/2128:2129, 1/5/2323:2325 | Single bulged A Not in a motif group | geometric IL_5TBW_082 IL_37497.2 | |
| IL_3U5H_090 | 1/5/2156:2161, 1/5/2173:2180 | Kink-turn related Not in a motif group | geometric IL_5TBW_083 IL_64509.1 | |
| IL_3U5H_091 | 1/5/2196:2199, 1/5/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_5TBW_084 IL_88739.1 | |
| IL_3U5H_092 | 1/5/2200:2201, 1/5/2241:2244 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_5TBW_085 IL_16396.2 | |
| IL_3U5H_093 | 1/5/2204:2206, 1/5/2237:2238 | Single bulged U Not in a motif group | geometric IL_5TBW_134 IL_83039.13 | |
| IL_3U5H_094 | 1/5/2276:2277, 1/5/2307:2310 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_59677.2 | |
| IL_3U5H_095 | 1/5/2277:2288, 1/5/2304:2307 | No text annotation Not in a motif group | geometric IL_5TBW_090 IL_81589.2 | |
| IL_3U5H_096 | 1/5/2391:2394, 1/5/2986:2988 | Major groove platform with extra pair Not in a motif group | geometric IL_5TBW_091 IL_63450.2 | |
| IL_3U5H_097 | 1/5/2396:2398, 1/5/2981:2984 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_092 IL_54678.5 | |
| IL_3U5H_098 | 1/5/2409:2411, 1/5/2811:2812 | Single bulged U Not in a motif group | geometric IL_5TBW_093 IL_83039.13 | |
| IL_3U5H_099 | 1/5/2412:2413, 1/5/2807:2810 | Minor groove platform Not in a motif group | geometric IL_5TBW_094 IL_42622.2 | |
| IL_3U5H_100 | 1/5/2423:2425, 1/5/2604:2607 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5TBW_095 IL_38958.7 | |
| IL_3U5H_101 | 1/5/2520:2526, 1/5/2584:2587 | No text annotation Not in a motif group | geometric IL_5TBW_096 IL_74114.1 | |
| IL_3U5H_103 | 1/5/2614:2615, 1/5/2625:2627 | Single bulged A Not in a motif group | geometric IL_5TBW_098 IL_37497.2 | |
| IL_3U5H_104 | 1/5/2666:2668, 1/5/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5TBW_099 IL_38958.7 | |
| IL_3U5H_105 | 1/5/2714:2716, 1/5/2740:2741 | Single bulged A Not in a motif group | geometric IL_5WWT_001 IL_37497.2 | |
| IL_3U5H_106 | 1/5/2718:2721, 1/5/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_100 IL_30621.2 | |
| IL_3U5H_107 | 1/5/2770:2773, 1/5/2787:2788 | Single stack bend with bulge Not in a motif group | geometric IL_5TBW_101 IL_76488.2 | |
| IL_3U5H_108 | 1/5/2823:2824, 1/5/2865:2867 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.1 | |
| IL_3U5H_109 | 1/5/2824:2826, 1/5/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_3U5H_110 | 1/5/2826:2828, 1/5/2862:2863 | Major groove platform Not in a motif group | geometric IL_4V9F_083 IL_76223.2 | |
| IL_3U5H_111 | 1/5/2828:2830, 1/5/2858:2862 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_92788.2 | |
| IL_3U5H_112 | 1/5/2835:2839, 1/5/2849:2853 | Triple sheared Not in a motif group | geometric IL_5TBW_106 IL_56467.8 | |
| IL_3U5H_113 | 1/5/2876:2877, 1/5/2949:2951 | Major groove platform Not in a motif group | geometric IL_5TBW_107 IL_76223.2 | |
| IL_3U5H_114 | 1/5/2879:2881, 1/5/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_3U5H_115 | 1/5/2881:2882, 1/5/2940:2943 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_3U5H_116 | 1/5/2889:2891, 1/5/2912:2914 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_3U5H_117 | 1/5/2891:2892, 1/5/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.3 | |
| IL_3U5H_118 | 1/5/2918:2920, 1/5/2926:2928 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_3U5H_119 | 1/5/2960:2961, 1/5/2970:2972 | Single bulged A Not in a motif group | geometric IL_5TBW_113 IL_37497.2 | |
| IL_3U5H_120 | 1/5/3004:3007, 1/5/3139:3144 | Double sheared Not in a motif group | geometric IL_5TBW_114 IL_09705.9 | |
| IL_3U5H_121 | 1/5/3012:3014, 1/5/3040:3042 | No text annotation Not in a motif group | geometric IL_5TBW_115 IL_95997.1 | |
| IL_3U5H_122 | 1/5/3018:3025, 1/5/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_3U5H_123 | 1/5/3047:3051, 1/5/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | geometric IL_5TBW_117 IL_37712.2 | |
| IL_3U5H_124 | 1/5/3054:3059, 1/5/3084:3088 | UAA/GAN related Not in a motif group | geometric IL_5TBW_118 IL_17136.1 | |
| IL_3U5H_125 | 1/5/3063:3064, 1/5/3077:3080 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_119 IL_71530.2 | |
| IL_3U5H_126 | 1/5/3103:3107, 1/5/3127:3131 | UAA/GAN Not in a motif group | geometric IL_5TBW_120 IL_89002.2 | |
| IL_3U5H_127 | 1/5/3161:3166, 1/5/3284:3289 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_3U5H_128 | 1/5/3168:3170, 1/5/3280:3282 | No text annotation Not in a motif group | geometric IL_2OE8_001 IL_95997.1 | |
| IL_3U5H_129 | 1/5/3177:3179, 1/5/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_3U5H_130 | 1/5/3179:3188, 1/5/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_3U5H_131 | 1/5/3193:3194, 1/5/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_3U5H_132 | 1/5/3225:3229, 1/5/3258:3260 | No text annotation Not in a motif group | geometric IL_5TBW_126 IL_19389.6 | |
| IL_3U5H_133 | 1/5/3233:3235, 1/5/3252:3254 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_3U5H_134 | 1/5/3235:3238, 1/5/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6MWN_005 IL_30621.2 | |
| IL_3U5H_135 | 1/5/3300:3303, 1/5/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_3U5H_136 | 1/5/3318:3320, 1/5/3387:3388 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.13 | |
| IL_3U5H_137 | 1/5/3324:3325, 1/5/3381:3383 | Single bulged U Not in a motif group | geometric IL_5TBW_131 IL_83039.13 | |
| IL_3U5H_138 | 1/5/3328:3330, 1/5/3373:3378 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_132 IL_90933.2 | |
| IL_3U5H_139 | 1/5/3332:3337, 1/5/3367:3371 | No text annotation Not in a motif group | geometric IL_5TBW_133 IL_83162.5 | |
| IL_3U5H_140 | 1/5/3340:3342, 1/5/3363:3364 | Single bulged U Not in a motif group | geometric IL_4V88_439 IL_83039.13 | |
| IL_3U5H_141 | 1/5/3342:3345, 1/5/3360:3363 | Double sheared Not in a motif group | geometric IL_4V9F_100 IL_09705.9 | |
| IL_3U5H_142 | 1/5/3349:3350, 1/5/3353:3356 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_3U5H_143 | 1/7/15:16, 1/7/63:65 | Single bulged A Not in a motif group | geometric IL_5TBW_372 IL_37497.2 | |
| IL_3U5H_144 | 1/7/21:27, 1/7/53:58 | No text annotation Not in a motif group | geometric IL_5TBW_373 IL_10207.2 | |
| IL_3U5H_145 | 1/7/28:29, 1/7/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_63797.2 | |
| IL_3U5H_146 | 1/7/29:30, 1/7/47:49 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_3U5H_147 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.6 | |
| IL_3U5H_148 | 1/7/72:80, 1/7/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_377 IL_04346.7 | |
| IL_3U5H_149 | 1/7/84:87, 1/7/94:96 | No text annotation Not in a motif group | geometric IL_5TBW_378 IL_95997.1 | |
| IL_3U5H_150 | 1/8/44:64, 1/8/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_3U5H_151 | 1/8/64:66, 1/8/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_3U5H_152 | 1/8/68:69, 1/8/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3U5H_018 | No text annotation | ||
| IL_3U5H_059 | Kink-turn | ||
| IL_3U5H_060 | No text annotation | ||
| IL_3U5H_061 | Major groove platform with extra cWW |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3U5H_001 | 1/5/113:123, 1/5/149:158, 1/5/263:267 | No text annotation Not in a motif group | ||
| J3_3U5H_002 | 1/5/814:820, 1/5/905:907, 1/5/923:926 | No text annotation Not in a motif group | ||
| J3_3U5H_003 | 1/5/829:831, 1/5/863:867, 1/5/892:895 | No text annotation Not in a motif group | ||
| J3_3U5H_005 | 1/5/1479:1485, 1/5/1857:1859, 1/5/1871:1874 | No text annotation Not in a motif group | ||
| J3_3U5H_006 | 1/5/1488:1491, 1/5/1837:1843, 1/5/1852:1854 | No text annotation Not in a motif group | ||
| J3_3U5H_007 | 1/5/2432:2435, 1/5/2512:2517, 1/5/2590:2597 | No text annotation Not in a motif group | ||
| J3_3U5H_008 | 1/5/2529:2532, 1/5/2547:2563, 1/5/2578:2581 | No text annotation Not in a motif group | ||
| J3_3U5H_009 | 1/5/2664:2666, 1/5/2690:2692, 1/5/2701:2706 | No text annotation Not in a motif group | ||
| J3_3U5H_010 | 1/5/2886:2889, 1/5/2914:2916, 1/5/2930:2936 | No text annotation Not in a motif group | ||
| J3_3U5H_011 | 1/5/3298:3300, 1/5/3314:3318, 1/5/3388:3390 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3U5H_004 | No text annotation |
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