3U5H | Motifs

Valid loops

#	loop id	location	annotation	motif
1	HL_3U5H_001 ➜	1/5/38:45	NA	NA
2	HL_3U5H_002 ➜	1/5/69:74	NA	NA
3	HL_3U5H_003 ➜	1/5/90:96	NA	NA
4	HL_3U5H_004 ➜	1/5/132:136	NA	NA
5	HL_3U5H_005 ➜	1/5/194:201	NA	NA
6	HL_3U5H_006 ➜	1/5/208:212	NA	NA
7	HL_3U5H_007 ➜	1/5/216:224	NA	NA
8	HL_3U5H_008 ➜	1/5/278:287	NA	NA
9	HL_3U5H_009 ➜	1/5/303:312	NA	NA
10	HL_3U5H_010 ➜	1/5/357:362	NA	NA
11	HL_3U5H_011 ➜	1/5/382:387	NA	NA
12	HL_3U5H_012 ➜	1/5/543:548	NA	NA
13	HL_3U5H_013 ➜	1/5/599:604	NA	NA
14	HL_3U5H_014 ➜	1/5/640:649	NA	NA
15	HL_3U5H_015 ➜	1/5/686:694	NA	NA
16	HL_3U5H_016 ➜	1/5/707:712	NA	NA
17	HL_3U5H_017 ➜	1/5/732:737	NA	NA
18	HL_3U5H_018 ➜	1/5/763:768	NA	NA
19	HL_3U5H_019 ➜	1/5/844:849	NA	NA
20	HL_3U5H_020 ➜	1/5/876:885	NA	NA
21	HL_3U5H_021 ➜	1/5/910:918	NA	NA
22	HL_3U5H_022 ➜	1/5/958:963	NA	NA
23	HL_3U5H_024 ➜	1/5/1076:1083	NA	NA
24	HL_3U5H_025 ➜	1/5/1126:1132	NA	NA
25	HL_3U5H_026 ➜	1/5/1148:1155	NA	NA
26	HL_3U5H_030 ➜	1/5/1403:1408	NA	NA
27	HL_3U5H_031 ➜	1/5/1462:1470	NA	NA
28	HL_3U5H_032 ➜	1/5/1506:1512	NA	NA
29	HL_3U5H_033 ➜	1/5/1544:1549	NA	NA
30	HL_3U5H_035 ➜	1/5/1599:1608	NA	NA
31	HL_3U5H_036 ➜	1/5/1634:1639	NA	NA
32	HL_3U5H_037 ➜	1/5/1680:1688	NA	NA
33	HL_3U5H_038 ➜	1/5/1719:1725	NA	NA
34	HL_3U5H_040 ➜	1/5/1792:1796	NA	NA
35	HL_3U5H_041 ➜	1/5/1844:1851	NA	NA
36	HL_3U5H_042 ➜	1/5/1862:1868	NA	NA
37	HL_3U5H_043 ➜	1/5/1923:1928	NA	NA
38	HL_3U5H_045 ➜	1/5/2110:2114	NA	NA
39	HL_3U5H_046 ➜	1/5/2135:2145	NA	NA
40	HL_3U5H_047 ➜	1/5/2164:2170	NA	NA
41	HL_3U5H_048 ➜	1/5/2220:2225	NA	NA
42	HL_3U5H_049 ➜	1/5/2253:2263	NA	NA
43	HL_3U5H_050 ➜	1/5/2292:2300	NA	NA
44	HL_3U5H_051 ➜	1/5/2369:2378	NA	NA
45	HL_3U5H_053 ➜	1/5/2534:2545	NA	NA
46	HL_3U5H_054 ➜	1/5/2568:2573	NA	NA
47	HL_3U5H_055 ➜	1/5/2616:2624	NA	NA
48	HL_3U5H_056 ➜	1/5/2633:2645	NA	NA
49	HL_3U5H_057 ➜	1/5/2673:2681	NA	NA
50	HL_3U5H_058 ➜	1/5/2693:2700	NA	NA
51	HL_3U5H_059 ➜	1/5/2724:2732	NA	NA
52	HL_3U5H_060 ➜	1/5/2744:2749	NA	NA
53	HL_3U5H_061 ➜	1/5/2776:2784	NA	NA
54	HL_3U5H_062 ➜	1/5/2840:2848	NA	NA
55	HL_3U5H_063 ➜	1/5/2897:2904	NA	NA
56	HL_3U5H_064 ➜	1/5/2920:2926	NA	NA
57	HL_3U5H_065 ➜	1/5/2963:2968	NA	NA
58	HL_3U5H_066 ➜	1/5/3025:3030	NA	NA
59	HL_3U5H_067 ➜	1/5/3068:3073	NA	NA
60	HL_3U5H_068 ➜	1/5/3110:3124	NA	NA
61	HL_3U5H_069 ➜	1/5/3194:3197	NA	NA
62	HL_3U5H_070 ➜	1/5/3240:3247	NA	NA
63	HL_3U5H_071 ➜	1/5/3303:3311	NA	NA
64	HL_3U5H_072 ➜	1/5/3350:3353	NA	NA
65	HL_3U5H_073 ➜	1/7/36:41	NA	NA
66	HL_3U5H_074 ➜	1/7/88:93	NA	NA
67	HL_3U5H_075 ➜	1/8/69:89	NA	NA
68	HL_3U5H_076 ➜	1/8/108:114	NA	NA
69	HL_3U5H_077 ➜	1/8/124:129	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_3U5H_023 ➜	missing nts	NA
2	HL_3U5H_027 ➜	missing nts	NA
3	HL_3U5H_028 ➜	missing nts	NA
4	HL_3U5H_029 ➜	missing nts	NA
5	HL_3U5H_034 ➜	missing nts	NA
6	HL_3U5H_039 ➜	missing nts	NA
7	HL_3U5H_044 ➜	missing nts	NA
8	HL_3U5H_052 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_3U5H_002 ➜	1/5/7:8,1/8/150:152	NA	NA
2	IL_3U5H_003 ➜	1/5/13:15,1/8/144:145	NA	NA
3	IL_3U5H_004 ➜	1/5/27:28,1/5/56:58	NA	NA
4	IL_3U5H_005 ➜	1/5/31:38,1/5/45:53	NA	NA
5	IL_3U5H_006 ➜	1/5/82:89,1/5/97:103	NA	NA
6	IL_3U5H_007 ➜	1/5/123:124,1/5/144:149	NA	NA
7	IL_3U5H_008 ➜	1/5/125:127,1/5/141:143	NA	NA
8	IL_3U5H_009 ➜	1/5/163:165,1/5/257:258	NA	NA
9	IL_3U5H_011 ➜	1/5/169:174,1/5/244:253	NA	NA
10	IL_3U5H_012 ➜	1/5/177:179,1/5/237:241	NA	NA
11	IL_3U5H_013 ➜	1/5/189:191,1/5/204:205	NA	NA
12	IL_3U5H_014 ➜	1/5/337:339,1/8/25:26	NA	NA
13	IL_3U5H_015 ➜	1/5/376:379,1/5/390:403	NA	NA
14	IL_3U5H_016 ➜	1/5/404:410,1/8/13:19	NA	NA
15	IL_3U5H_017 ➜	1/5/429:431,1/5/628:630	NA	NA
16	IL_3U5H_019 ➜	1/5/512:513,1/5/577:579	NA	NA
17	IL_3U5H_020 ➜	1/5/517:525,1/5/567:573	NA	NA
18	IL_3U5H_021 ➜	1/5/531:538,1/5/553:561	NA	NA
19	IL_3U5H_022 ➜	1/5/668:670,1/5/792:794	NA	NA
20	IL_3U5H_023 ➜	1/5/680:684,1/5/696:700	NA	NA
21	IL_3U5H_024 ➜	1/5/725:728,1/5/741:745	NA	NA
22	IL_3U5H_025 ➜	1/5/752:753,1/5/779:781	NA	NA
23	IL_3U5H_026 ➜	1/5/755:756,1/5/775:777	NA	NA
24	IL_3U5H_027 ➜	1/5/758:763,1/5/768:773	NA	NA
25	IL_3U5H_028 ➜	1/5/803:805,1/5/938:940	NA	NA
26	IL_3U5H_029 ➜	1/5/805:809,1/5/931:938	NA	NA
27	IL_3U5H_030 ➜	1/5/828:829,1/5/895:897	NA	NA
28	IL_3U5H_031 ➜	1/5/833:834,1/5/859:861	NA	NA
29	IL_3U5H_032 ➜	1/5/834:838,1/5/855:859	NA	NA
30	IL_3U5H_033 ➜	1/5/869:872,1/5/888:890	NA	NA
31	IL_3U5H_034 ➜	1/5/873:875,1/5/886:887	NA	NA
32	IL_3U5H_035 ➜	1/5/907:909,1/5/919:923	NA	NA
33	IL_3U5H_036 ➜	1/5/954:956,1/5/965:967	NA	NA
34	IL_3U5H_037 ➜	1/5/969:970,1/5/1111:1113	NA	NA
35	IL_3U5H_038 ➜	1/5/977:982,1/5/1101:1104	NA	NA
36	IL_3U5H_039 ➜	1/5/983:985,1/5/1099:1100	NA	NA
37	IL_3U5H_040 ➜	1/5/991:997,1/5/1052:1058	NA	NA
38	IL_3U5H_041 ➜	1/5/997:998,1/5/1050:1052	NA	NA
39	IL_3U5H_042 ➜	1/5/999:1004,1/5/1046:1049	NA	NA
40	IL_3U5H_043 ➜	1/5/1006:1009,1/5/1041:1044	NA	NA
41	IL_3U5H_044 ➜	1/5/1009:1011,1/5/1039:1041	NA	NA
42	IL_3U5H_046 ➜	1/5/1015:1018,1/5/1034:1035	NA	NA
43	IL_3U5H_049 ➜	1/5/1069:1071,1/5/1087:1089	NA	NA
44	IL_3U5H_050 ➜	1/5/1074:1076,1/5/1083:1084	NA	NA
45	IL_3U5H_051 ➜	1/5/1120:1122,1/5/1136:1138	NA	NA
46	IL_3U5H_052 ➜	1/5/1123:1125,1/5/1133:1135	NA	NA
47	IL_3U5H_053 ➜	1/5/1167:1171,1/5/1328:1332	NA	NA
48	IL_3U5H_054 ➜	1/5/1173:1180,1/5/1325:1326	NA	NA
49	IL_3U5H_055 ➜	1/5/1180:1182,1/5/1324:1325	NA	NA
50	IL_3U5H_056 ➜	1/5/1187:1194,1/5/1314:1319	NA	NA
51	IL_3U5H_057 ➜	1/5/1194:1205,1/5/1299:1314	NA	NA
52	IL_3U5H_058 ➜	1/5/1207:1209,1/5/1296:1297	NA	NA
53	IL_3U5H_062 ➜	1/5/1376:1378,1/5/1428:1431	NA	NA
54	IL_3U5H_063 ➜	1/5/1385:1387,1/5/1420:1421	NA	NA
55	IL_3U5H_064 ➜	1/5/1388:1395,1/5/1415:1419	NA	NA
56	IL_3U5H_065 ➜	1/5/1398:1400,1/5/1411:1412	NA	NA
57	IL_3U5H_066 ➜	1/5/1444:1450,1/5/2354:2359	NA	NA
58	IL_3U5H_067 ➜	1/5/1492:1495,1/5/1835:1836	NA	NA
59	IL_3U5H_068 ➜	1/5/1500:1505,1/5/1513:1516	NA	NA
60	IL_3U5H_069 ➜	1/5/1532:1536,1/5/1585:1590	NA	NA
61	IL_3U5H_071 ➜	1/5/1618:1621,1/5/1824:1826	NA	NA
62	IL_3U5H_072 ➜	1/5/1623:1625,1/5/1818:1822	NA	NA
63	IL_3U5H_074 ➜	1/5/1627:1631,1/5/1811:1816	NA	NA
64	IL_3U5H_075 ➜	1/5/1645:1649,1/5/1806:1810	NA	NA
65	IL_3U5H_076 ➜	1/5/1661:1663,1/5/1786:1788	NA	NA
66	IL_3U5H_077 ➜	1/5/1669:1670,1/5/1778:1780	NA	NA
67	IL_3U5H_078 ➜	1/5/1670:1671,1/5/1776:1778	NA	NA
68	IL_3U5H_079 ➜	1/5/1694:1698,1/5/1747:1752	NA	NA
69	IL_3U5H_080 ➜	1/5/1702:1707,1/5/1737:1743	NA	NA
70	IL_3U5H_081 ➜	1/5/1711:1717,1/5/1727:1733	NA	NA
71	IL_3U5H_082 ➜	1/5/1883:1889,1/5/2346:2349	NA	NA
72	IL_3U5H_083 ➜	1/5/1895:1897,1/5/2338:2340	NA	NA
73	IL_3U5H_084 ➜	1/5/1898:1901,1/5/2336:2337	NA	NA
74	IL_3U5H_085 ➜	1/5/1901:1906,1/5/2333:2336	NA	NA
75	IL_3U5H_086 ➜	1/5/1918:1923,1/5/1928:1934	NA	NA
76	IL_3U5H_087 ➜	1/5/1940:1942,1/5/2106:2108	NA	NA
77	IL_3U5H_088 ➜	1/5/1947:1948,1/5/2098:2101	NA	NA
78	IL_3U5H_089 ➜	1/5/2128:2129,1/5/2323:2325	NA	NA
79	IL_3U5H_090 ➜	1/5/2156:2161,1/5/2173:2180	NA	NA
80	IL_3U5H_091 ➜	1/5/2196:2199,1/5/2245:2246	NA	NA
81	IL_3U5H_092 ➜	1/5/2200:2201,1/5/2241:2244	NA	NA
82	IL_3U5H_093 ➜	1/5/2204:2206,1/5/2237:2238	NA	NA
83	IL_3U5H_094 ➜	1/5/2276:2277,1/5/2307:2310	NA	NA
84	IL_3U5H_095 ➜	1/5/2277:2288,1/5/2304:2307	NA	NA
85	IL_3U5H_096 ➜	1/5/2391:2394,1/5/2986:2988	NA	NA
86	IL_3U5H_097 ➜	1/5/2396:2398,1/5/2981:2984	NA	NA
87	IL_3U5H_098 ➜	1/5/2409:2411,1/5/2811:2812	NA	NA
88	IL_3U5H_099 ➜	1/5/2412:2413,1/5/2807:2810	NA	NA
89	IL_3U5H_100 ➜	1/5/2423:2425,1/5/2604:2607	NA	NA
90	IL_3U5H_101 ➜	1/5/2520:2526,1/5/2584:2587	NA	NA
91	IL_3U5H_103 ➜	1/5/2614:2615,1/5/2625:2627	NA	NA
92	IL_3U5H_104 ➜	1/5/2666:2668,1/5/2686:2690	NA	NA
93	IL_3U5H_105 ➜	1/5/2714:2716,1/5/2740:2741	NA	NA
94	IL_3U5H_106 ➜	1/5/2718:2721,1/5/2735:2738	NA	NA
95	IL_3U5H_107 ➜	1/5/2770:2773,1/5/2787:2788	NA	NA
96	IL_3U5H_108 ➜	1/5/2823:2824,1/5/2865:2867	NA	NA
97	IL_3U5H_109 ➜	1/5/2824:2826,1/5/2863:2865	NA	NA
98	IL_3U5H_110 ➜	1/5/2826:2828,1/5/2862:2863	NA	NA
99	IL_3U5H_111 ➜	1/5/2828:2830,1/5/2858:2862	NA	NA
100	IL_3U5H_112 ➜	1/5/2835:2839,1/5/2849:2853	NA	NA
101	IL_3U5H_113 ➜	1/5/2876:2877,1/5/2949:2951	NA	NA
102	IL_3U5H_114 ➜	1/5/2879:2881,1/5/2943:2947	NA	NA
103	IL_3U5H_115 ➜	1/5/2881:2882,1/5/2940:2943	NA	NA
104	IL_3U5H_116 ➜	1/5/2889:2891,1/5/2912:2914	NA	NA
105	IL_3U5H_117 ➜	1/5/2891:2892,1/5/2909:2912	NA	NA
106	IL_3U5H_118 ➜	1/5/2918:2920,1/5/2926:2928	NA	NA
107	IL_3U5H_119 ➜	1/5/2960:2961,1/5/2970:2972	NA	NA
108	IL_3U5H_120 ➜	1/5/3004:3007,1/5/3139:3144	NA	NA
109	IL_3U5H_121 ➜	1/5/3012:3014,1/5/3040:3042	NA	NA
110	IL_3U5H_122 ➜	1/5/3018:3025,1/5/3030:3036	NA	NA
111	IL_3U5H_123 ➜	1/5/3047:3051,1/5/3091:3094	NA	NA
112	IL_3U5H_124 ➜	1/5/3054:3059,1/5/3084:3088	NA	NA
113	IL_3U5H_125 ➜	1/5/3063:3064,1/5/3077:3080	NA	NA
114	IL_3U5H_126 ➜	1/5/3103:3107,1/5/3127:3131	NA	NA
115	IL_3U5H_127 ➜	1/5/3161:3166,1/5/3284:3289	NA	NA
116	IL_3U5H_128 ➜	1/5/3168:3170,1/5/3280:3282	NA	NA
117	IL_3U5H_129 ➜	1/5/3177:3179,1/5/3210:3211	NA	NA
118	IL_3U5H_130 ➜	1/5/3179:3188,1/5/3204:3210	NA	NA
119	IL_3U5H_131 ➜	1/5/3193:3194,1/5/3197:3199	NA	NA
120	IL_3U5H_132 ➜	1/5/3225:3229,1/5/3258:3260	NA	NA
121	IL_3U5H_133 ➜	1/5/3233:3235,1/5/3252:3254	NA	NA
122	IL_3U5H_134 ➜	1/5/3235:3238,1/5/3249:3252	NA	NA
123	IL_3U5H_135 ➜	1/5/3300:3303,1/5/3311:3314	NA	NA
124	IL_3U5H_136 ➜	1/5/3318:3320,1/5/3387:3388	NA	NA
125	IL_3U5H_137 ➜	1/5/3324:3325,1/5/3381:3383	NA	NA
126	IL_3U5H_138 ➜	1/5/3328:3330,1/5/3373:3378	NA	NA
127	IL_3U5H_139 ➜	1/5/3332:3337,1/5/3367:3371	NA	NA
128	IL_3U5H_140 ➜	1/5/3340:3342,1/5/3363:3364	NA	NA
129	IL_3U5H_141 ➜	1/5/3342:3345,1/5/3360:3363	NA	NA
130	IL_3U5H_142 ➜	1/5/3349:3350,1/5/3353:3356	NA	NA
131	IL_3U5H_143 ➜	1/7/15:16,1/7/63:65	NA	NA
132	IL_3U5H_144 ➜	1/7/21:27,1/7/53:58	NA	NA
133	IL_3U5H_145 ➜	1/7/28:29,1/7/49:52	NA	NA
134	IL_3U5H_146 ➜	1/7/29:30,1/7/47:49	NA	NA
135	IL_3U5H_147 ➜	1/7/32:36,1/7/41:45	NA	NA
136	IL_3U5H_148 ➜	1/7/72:80,1/7/100:106	NA	NA
137	IL_3U5H_149 ➜	1/7/84:87,1/7/94:96	NA	NA
138	IL_3U5H_150 ➜	1/8/44:64,1/8/96:100	NA	NA
139	IL_3U5H_151 ➜	1/8/64:66,1/8/93:96	NA	NA
140	IL_3U5H_152 ➜	1/8/68:69,1/8/89:91	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_3U5H_018 ➜	missing nts	NA
2	IL_3U5H_059 ➜	missing nts	NA
3	IL_3U5H_060 ➜	missing nts	NA
4	IL_3U5H_061 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_3U5H_001 ➜	1/5/113:123,1/5/149:158,1/5/263:267	NA	NA
2	J3_3U5H_002 ➜	1/5/814:820,1/5/905:907,1/5/923:926	NA	NA
3	J3_3U5H_003 ➜	1/5/829:831,1/5/863:867,1/5/892:895	NA	NA
4	J3_3U5H_005 ➜	1/5/1479:1485,1/5/1857:1859,1/5/1871:1874	NA	NA
5	J3_3U5H_006 ➜	1/5/1488:1491,1/5/1837:1843,1/5/1852:1854	NA	NA
6	J3_3U5H_007 ➜	1/5/2432:2435,1/5/2512:2517,1/5/2590:2597	NA	NA
7	J3_3U5H_008 ➜	1/5/2529:2532,1/5/2547:2563,1/5/2578:2581	NA	NA
8	J3_3U5H_009 ➜	1/5/2664:2666,1/5/2690:2692,1/5/2701:2706	NA	NA
9	J3_3U5H_010 ➜	1/5/2886:2889,1/5/2914:2916,1/5/2930:2936	NA	NA
10	J3_3U5H_011 ➜	1/5/3298:3300,1/5/3314:3318,1/5/3388:3390	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_3U5H_004 ➜	missing nts	NA

3U5H Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops