3U5H Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/5/38:45 | NA | NA | ||
1/5/69:74 | NA | NA | ||
1/5/90:96 | NA | NA | ||
1/5/132:136 | NA | NA | ||
1/5/194:201 | NA | NA | ||
1/5/208:212 | NA | NA | ||
1/5/216:224 | NA | NA | ||
1/5/278:287 | NA | NA | ||
1/5/303:312 | NA | NA | ||
1/5/357:362 | NA | NA | ||
1/5/382:387 | NA | NA | ||
1/5/543:548 | NA | NA | ||
1/5/599:604 | NA | NA | ||
1/5/640:649 | NA | NA | ||
1/5/686:694 | NA | NA | ||
1/5/707:712 | NA | NA | ||
1/5/732:737 | NA | NA | ||
1/5/763:768 | NA | NA | ||
1/5/844:849 | NA | NA | ||
1/5/876:885 | NA | NA | ||
1/5/910:918 | NA | NA | ||
1/5/958:963 | NA | NA | ||
1/5/1076:1083 | NA | NA | ||
1/5/1126:1132 | NA | NA | ||
1/5/1148:1155 | NA | NA | ||
1/5/1403:1408 | NA | NA | ||
1/5/1462:1470 | NA | NA | ||
1/5/1506:1512 | NA | NA | ||
1/5/1544:1549 | NA | NA | ||
1/5/1599:1608 | NA | NA | ||
1/5/1634:1639 | NA | NA | ||
1/5/1680:1688 | NA | NA | ||
1/5/1719:1725 | NA | NA | ||
1/5/1792:1796 | NA | NA | ||
1/5/1844:1851 | NA | NA | ||
1/5/1862:1868 | NA | NA | ||
1/5/1923:1928 | NA | NA | ||
1/5/2110:2114 | NA | NA | ||
1/5/2135:2145 | NA | NA | ||
1/5/2164:2170 | NA | NA | ||
1/5/2220:2225 | NA | NA | ||
1/5/2253:2263 | NA | NA | ||
1/5/2292:2300 | NA | NA | ||
1/5/2369:2378 | NA | NA | ||
1/5/2534:2545 | NA | NA | ||
1/5/2568:2573 | NA | NA | ||
1/5/2616:2624 | NA | NA | ||
1/5/2633:2645 | NA | NA | ||
1/5/2673:2681 | NA | NA | ||
1/5/2693:2700 | NA | NA | ||
1/5/2724:2732 | NA | NA | ||
1/5/2744:2749 | NA | NA | ||
1/5/2776:2784 | NA | NA | ||
1/5/2840:2848 | NA | NA | ||
1/5/2897:2904 | NA | NA | ||
1/5/2920:2926 | NA | NA | ||
1/5/2963:2968 | NA | NA | ||
1/5/3025:3030 | NA | NA | ||
1/5/3068:3073 | NA | NA | ||
1/5/3110:3124 | NA | NA | ||
1/5/3194:3197 | NA | NA | ||
1/5/3240:3247 | NA | NA | ||
1/5/3303:3311 | NA | NA | ||
1/5/3350:3353 | NA | NA | ||
1/7/36:41 | NA | NA | ||
1/7/88:93 | NA | NA | ||
1/8/69:89 | NA | NA | ||
1/8/108:114 | NA | NA | ||
1/8/124:129 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_3U5H_023 | NA | ||
HL_3U5H_027 | NA | ||
HL_3U5H_028 | NA | ||
HL_3U5H_029 | NA | ||
HL_3U5H_034 | NA | ||
HL_3U5H_039 | NA | ||
HL_3U5H_044 | NA | ||
HL_3U5H_052 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/5/7:8, 1/8/150:152 | NA | NA | ||
1/5/13:15, 1/8/144:145 | NA | NA | ||
1/5/27:28, 1/5/56:58 | NA | NA | ||
1/5/31:38, 1/5/45:53 | NA | NA | ||
1/5/82:89, 1/5/97:103 | NA | NA | ||
1/5/123:124, 1/5/144:149 | NA | NA | ||
1/5/125:127, 1/5/141:143 | NA | NA | ||
1/5/163:165, 1/5/257:258 | NA | NA | ||
1/5/169:174, 1/5/244:253 | NA | NA | ||
1/5/177:179, 1/5/237:241 | NA | NA | ||
1/5/189:191, 1/5/204:205 | NA | NA | ||
1/5/337:339, 1/8/25:26 | NA | NA | ||
1/5/376:379, 1/5/390:403 | NA | NA | ||
1/5/404:410, 1/8/13:19 | NA | NA | ||
1/5/429:431, 1/5/628:630 | NA | NA | ||
1/5/512:513, 1/5/577:579 | NA | NA | ||
1/5/517:525, 1/5/567:573 | NA | NA | ||
1/5/531:538, 1/5/553:561 | NA | NA | ||
1/5/668:670, 1/5/792:794 | NA | NA | ||
1/5/680:684, 1/5/696:700 | NA | NA | ||
1/5/725:728, 1/5/741:745 | NA | NA | ||
1/5/752:753, 1/5/779:781 | NA | NA | ||
1/5/755:756, 1/5/775:777 | NA | NA | ||
1/5/758:763, 1/5/768:773 | NA | NA | ||
1/5/803:805, 1/5/938:940 | NA | NA | ||
1/5/805:809, 1/5/931:938 | NA | NA | ||
1/5/828:829, 1/5/895:897 | NA | NA | ||
1/5/833:834, 1/5/859:861 | NA | NA | ||
1/5/834:838, 1/5/855:859 | NA | NA | ||
1/5/869:872, 1/5/888:890 | NA | NA | ||
1/5/873:875, 1/5/886:887 | NA | NA | ||
1/5/907:909, 1/5/919:923 | NA | NA | ||
1/5/954:956, 1/5/965:967 | NA | NA | ||
1/5/969:970, 1/5/1111:1113 | NA | NA | ||
1/5/977:982, 1/5/1101:1104 | NA | NA | ||
1/5/983:985, 1/5/1099:1100 | NA | NA | ||
1/5/991:997, 1/5/1052:1058 | NA | NA | ||
1/5/997:998, 1/5/1050:1052 | NA | NA | ||
1/5/999:1004, 1/5/1046:1049 | NA | NA | ||
1/5/1006:1009, 1/5/1041:1044 | NA | NA | ||
1/5/1009:1011, 1/5/1039:1041 | NA | NA | ||
1/5/1015:1018, 1/5/1034:1035 | NA | NA | ||
1/5/1069:1071, 1/5/1087:1089 | NA | NA | ||
1/5/1074:1076, 1/5/1083:1084 | NA | NA | ||
1/5/1120:1122, 1/5/1136:1138 | NA | NA | ||
1/5/1123:1125, 1/5/1133:1135 | NA | NA | ||
1/5/1167:1171, 1/5/1328:1332 | NA | NA | ||
1/5/1173:1180, 1/5/1325:1326 | NA | NA | ||
1/5/1180:1182, 1/5/1324:1325 | NA | NA | ||
1/5/1187:1194, 1/5/1314:1319 | NA | NA | ||
1/5/1194:1205, 1/5/1299:1314 | NA | NA | ||
1/5/1207:1209, 1/5/1296:1297 | NA | NA | ||
1/5/1376:1378, 1/5/1428:1431 | NA | NA | ||
1/5/1385:1387, 1/5/1420:1421 | NA | NA | ||
1/5/1388:1395, 1/5/1415:1419 | NA | NA | ||
1/5/1398:1400, 1/5/1411:1412 | NA | NA | ||
1/5/1444:1450, 1/5/2354:2359 | NA | NA | ||
1/5/1492:1495, 1/5/1835:1836 | NA | NA | ||
1/5/1500:1505, 1/5/1513:1516 | NA | NA | ||
1/5/1532:1536, 1/5/1585:1590 | NA | NA | ||
1/5/1618:1621, 1/5/1824:1826 | NA | NA | ||
1/5/1623:1625, 1/5/1818:1822 | NA | NA | ||
1/5/1627:1631, 1/5/1811:1816 | NA | NA | ||
1/5/1645:1649, 1/5/1806:1810 | NA | NA | ||
1/5/1661:1663, 1/5/1786:1788 | NA | NA | ||
1/5/1669:1670, 1/5/1778:1780 | NA | NA | ||
1/5/1670:1671, 1/5/1776:1778 | NA | NA | ||
1/5/1694:1698, 1/5/1747:1752 | NA | NA | ||
1/5/1702:1707, 1/5/1737:1743 | NA | NA | ||
1/5/1711:1717, 1/5/1727:1733 | NA | NA | ||
1/5/1883:1889, 1/5/2346:2349 | NA | NA | ||
1/5/1895:1897, 1/5/2338:2340 | NA | NA | ||
1/5/1898:1901, 1/5/2336:2337 | NA | NA | ||
1/5/1901:1906, 1/5/2333:2336 | NA | NA | ||
1/5/1918:1923, 1/5/1928:1934 | NA | NA | ||
1/5/1940:1942, 1/5/2106:2108 | NA | NA | ||
1/5/1947:1948, 1/5/2098:2101 | NA | NA | ||
1/5/2128:2129, 1/5/2323:2325 | NA | NA | ||
1/5/2156:2161, 1/5/2173:2180 | NA | NA | ||
1/5/2196:2199, 1/5/2245:2246 | NA | NA | ||
1/5/2200:2201, 1/5/2241:2244 | NA | NA | ||
1/5/2204:2206, 1/5/2237:2238 | NA | NA | ||
1/5/2276:2277, 1/5/2307:2310 | NA | NA | ||
1/5/2277:2288, 1/5/2304:2307 | NA | NA | ||
1/5/2391:2394, 1/5/2986:2988 | NA | NA | ||
1/5/2396:2398, 1/5/2981:2984 | NA | NA | ||
1/5/2409:2411, 1/5/2811:2812 | NA | NA | ||
1/5/2412:2413, 1/5/2807:2810 | NA | NA | ||
1/5/2423:2425, 1/5/2604:2607 | NA | NA | ||
1/5/2520:2526, 1/5/2584:2587 | NA | NA | ||
1/5/2614:2615, 1/5/2625:2627 | NA | NA | ||
1/5/2666:2668, 1/5/2686:2690 | NA | NA | ||
1/5/2714:2716, 1/5/2740:2741 | NA | NA | ||
1/5/2718:2721, 1/5/2735:2738 | NA | NA | ||
1/5/2770:2773, 1/5/2787:2788 | NA | NA | ||
1/5/2823:2824, 1/5/2865:2867 | NA | NA | ||
1/5/2824:2826, 1/5/2863:2865 | NA | NA | ||
1/5/2826:2828, 1/5/2862:2863 | NA | NA | ||
1/5/2828:2830, 1/5/2858:2862 | NA | NA | ||
1/5/2835:2839, 1/5/2849:2853 | NA | NA | ||
1/5/2876:2877, 1/5/2949:2951 | NA | NA | ||
1/5/2879:2881, 1/5/2943:2947 | NA | NA | ||
1/5/2881:2882, 1/5/2940:2943 | NA | NA | ||
1/5/2889:2891, 1/5/2912:2914 | NA | NA | ||
1/5/2891:2892, 1/5/2909:2912 | NA | NA | ||
1/5/2918:2920, 1/5/2926:2928 | NA | NA | ||
1/5/2960:2961, 1/5/2970:2972 | NA | NA | ||
1/5/3004:3007, 1/5/3139:3144 | NA | NA | ||
1/5/3012:3014, 1/5/3040:3042 | NA | NA | ||
1/5/3018:3025, 1/5/3030:3036 | NA | NA | ||
1/5/3047:3051, 1/5/3091:3094 | NA | NA | ||
1/5/3054:3059, 1/5/3084:3088 | NA | NA | ||
1/5/3063:3064, 1/5/3077:3080 | NA | NA | ||
1/5/3103:3107, 1/5/3127:3131 | NA | NA | ||
1/5/3161:3166, 1/5/3284:3289 | NA | NA | ||
1/5/3168:3170, 1/5/3280:3282 | NA | NA | ||
1/5/3177:3179, 1/5/3210:3211 | NA | NA | ||
1/5/3179:3188, 1/5/3204:3210 | NA | NA | ||
1/5/3193:3194, 1/5/3197:3199 | NA | NA | ||
1/5/3225:3229, 1/5/3258:3260 | NA | NA | ||
1/5/3233:3235, 1/5/3252:3254 | NA | NA | ||
1/5/3235:3238, 1/5/3249:3252 | NA | NA | ||
1/5/3300:3303, 1/5/3311:3314 | NA | NA | ||
1/5/3318:3320, 1/5/3387:3388 | NA | NA | ||
1/5/3324:3325, 1/5/3381:3383 | NA | NA | ||
1/5/3328:3330, 1/5/3373:3378 | NA | NA | ||
1/5/3332:3337, 1/5/3367:3371 | NA | NA | ||
1/5/3340:3342, 1/5/3363:3364 | NA | NA | ||
1/5/3342:3345, 1/5/3360:3363 | NA | NA | ||
1/5/3349:3350, 1/5/3353:3356 | NA | NA | ||
1/7/15:16, 1/7/63:65 | NA | NA | ||
1/7/21:27, 1/7/53:58 | NA | NA | ||
1/7/28:29, 1/7/49:52 | NA | NA | ||
1/7/29:30, 1/7/47:49 | NA | NA | ||
1/7/32:36, 1/7/41:45 | NA | NA | ||
1/7/72:80, 1/7/100:106 | NA | NA | ||
1/7/84:87, 1/7/94:96 | NA | NA | ||
1/8/44:64, 1/8/96:100 | NA | NA | ||
1/8/64:66, 1/8/93:96 | NA | NA | ||
1/8/68:69, 1/8/89:91 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_3U5H_018 | NA | ||
IL_3U5H_059 | NA | ||
IL_3U5H_060 | NA | ||
IL_3U5H_061 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/5/113:123, 1/5/149:158, 1/5/263:267 | NA | NA | ||
1/5/814:820, 1/5/905:907, 1/5/923:926 | NA | NA | ||
1/5/829:831, 1/5/863:867, 1/5/892:895 | NA | NA | ||
1/5/1479:1485, 1/5/1857:1859, 1/5/1871:1874 | NA | NA | ||
1/5/1488:1491, 1/5/1837:1843, 1/5/1852:1854 | NA | NA | ||
1/5/2432:2435, 1/5/2512:2517, 1/5/2590:2597 | NA | NA | ||
1/5/2529:2532, 1/5/2547:2563, 1/5/2578:2581 | NA | NA | ||
1/5/2664:2666, 1/5/2690:2692, 1/5/2701:2706 | NA | NA | ||
1/5/2886:2889, 1/5/2914:2916, 1/5/2930:2936 | NA | NA | ||
1/5/3298:3300, 1/5/3314:3318, 1/5/3388:3390 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_3U5H_004 | NA |
Coloring options: