4V6Q Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_4V6Q_001 | 1/AA/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
HL_4V6Q_002 | 1/AA/82:87 | No text annotation Not in a motif group | ||
HL_4V6Q_003 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
HL_4V6Q_004 | 1/AA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
HL_4V6Q_005 | 1/AA/207:212 | UNCG Not in a motif group | homologous HL_5J7L_005 HL_03562.2 | |
HL_4V6Q_006 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
HL_4V6Q_007 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
HL_4V6Q_008 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
HL_4V6Q_009 | 1/AA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
HL_4V6Q_010 | 1/AA/379:384 | No text annotation Not in a motif group | ||
HL_4V6Q_011 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
HL_4V6Q_012 | 1/AA/462:470 | No text annotation Not in a motif group | ||
HL_4V6Q_013 | 1/AA/521:528 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
HL_4V6Q_014 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
HL_4V6Q_015 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
HL_4V6Q_016 | 1/AA/726:731 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
HL_4V6Q_017 | 1/AA/785:797 | No text annotation Not in a motif group | ||
HL_4V6Q_018 | 1/AA/840:846 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
HL_4V6Q_019 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
HL_4V6Q_020 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
HL_4V6Q_021 | 1/AA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
HL_4V6Q_022 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
HL_4V6Q_023 | 1/AA/1028:1033 | UNCG Not in a motif group | geometric HL_1I6U_001 HL_03562.2 | |
HL_4V6Q_024 | 1/AA/1074:1083 | No text annotation Not in a motif group | ||
HL_4V6Q_025 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
HL_4V6Q_026 | 1/AA/1134:1140 | No text annotation Not in a motif group | ||
HL_4V6Q_027 | 1/AA/1165:1171 | No text annotation Not in a motif group | ||
HL_4V6Q_028 | 1/AA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
HL_4V6Q_029 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
HL_4V6Q_030 | 1/AA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
HL_4V6Q_031 | 1/AA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
HL_4V6Q_032 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
HL_4V6Q_033 | 1/AB/13:22 | No text annotation Not in a motif group | homologous HL_4V9K_033 HL_98984.2 | |
HL_4V6Q_034 | 1/AB/30:40 | No text annotation Not in a motif group | homologous HL_5IB8_208 NA | |
HL_4V6Q_035 | 1/AB/52:62 | No text annotation Not in a motif group | homologous HL_4WQ1_225 NA | |
HL_4V6Q_036 | 1/AD/13:23 | No text annotation Not in a motif group | homologous HL_4YYE_001 NA | |
HL_4V6Q_037 | 1/AD/32:40 | tRNA anticodon loop Not in a motif group | homologous HL_6UFM_002 HL_53597.2 | |
HL_4V6Q_038 | 1/AD/54:62 | No text annotation Not in a motif group | homologous HL_3KFU_006 NA | |
HL_4V6Q_039 | 1/BA/34:48 | No text annotation Not in a motif group | ||
HL_4V6Q_040 | 1/BA/85:91 | No text annotation Not in a motif group | ||
HL_4V6Q_041 | 1/BB/59:68 | No text annotation Not in a motif group | homologous HL_7A0S_001 HL_99167.1 | |
HL_4V6Q_042 | 1/BB/86:96 | No text annotation Not in a motif group | ||
HL_4V6Q_043 | 1/BB/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
HL_4V6Q_044 | 1/BB/137:142 | No text annotation Not in a motif group | geometric HL_6CK5_001 HL_03562.2 | |
HL_4V6Q_045 | 1/BB/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
HL_4V6Q_046 | 1/BB/194:201 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_06192.2 | |
HL_4V6Q_047 | 1/BB/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
HL_4V6Q_048 | 1/BB/246:252 | No text annotation Not in a motif group | homologous HL_4WF9_008 HL_67216.7 | |
HL_4V6Q_049 | 1/BB/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
HL_4V6Q_050 | 1/BB/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
HL_4V6Q_051 | 1/BB/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
HL_4V6Q_052 | 1/BB/381:393 | No text annotation Not in a motif group | ||
HL_4V6Q_053 | 1/BB/409:418 | No text annotation Not in a motif group | geometric HL_4V83_139 HL_53597.2 | |
HL_4V6Q_054 | 1/BB/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
HL_4V6Q_055 | 1/BB/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
HL_4V6Q_056 | 1/BB/543:550 | No text annotation Not in a motif group | ||
HL_4V6Q_057 | 1/BB/566:575 | No text annotation Not in a motif group | ||
HL_4V6Q_058 | 1/BB/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
HL_4V6Q_059 | 1/BB/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
HL_4V6Q_060 | 1/BB/640:648 | No text annotation Not in a motif group | ||
HL_4V6Q_061 | 1/BB/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
HL_4V6Q_062 | 1/BB/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
HL_4V6Q_063 | 1/BB/779:785 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
HL_4V6Q_064 | 1/BB/825:832 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_86373.2 | |
HL_4V6Q_065 | 1/BB/885:891 | No text annotation Not in a motif group | ||
HL_4V6Q_066 | 1/BB/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
HL_4V6Q_067 | 1/BB/978:985 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
HL_4V6Q_068 | 1/BB/1064:1074 | No text annotation Not in a motif group | ||
HL_4V6Q_069 | 1/BB/1092:1099 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.2 | |
HL_4V6Q_070 | 1/BB/1172:1177 | No text annotation Not in a motif group | ||
HL_4V6Q_071 | 1/BB/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
HL_4V6Q_072 | 1/BB/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
HL_4V6Q_073 | 1/BB/1324:1330 | No text annotation Not in a motif group | homologous HL_7A0S_033 HL_46680.1 | |
HL_4V6Q_074 | 1/BB/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
HL_4V6Q_075 | 1/BB/1389:1398 | No text annotation Not in a motif group | homologous HL_7A0S_035 HL_70682.1 | |
HL_4V6Q_076 | 1/BB/1450:1461 | No text annotation Not in a motif group | ||
HL_4V6Q_077 | 1/BB/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
HL_4V6Q_078 | 1/BB/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_03562.2 | |
HL_4V6Q_079 | 1/BB/1565:1568 | No text annotation Not in a motif group | ||
HL_4V6Q_080 | 1/BB/1612:1619 | No text annotation Not in a motif group | ||
HL_4V6Q_081 | 1/BB/1629:1637 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
HL_4V6Q_082 | 1/BB/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
HL_4V6Q_083 | 1/BB/1728:1731 | No text annotation Not in a motif group | ||
HL_4V6Q_084 | 1/BB/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
HL_4V6Q_085 | 1/BB/1777:1787 | No text annotation Not in a motif group | ||
HL_4V6Q_086 | 1/BB/1806:1811 | No text annotation Not in a motif group | homologous HL_4WF9_044 NA | |
HL_4V6Q_087 | 1/BB/1868:1873 | GNRA Not in a motif group | geometric HL_6CZR_090 HL_87030.2 | |
HL_4V6Q_088 | 1/BB/1910:1920 | No text annotation Not in a motif group | homologous HL_5J7L_181 NA | |
HL_4V6Q_089 | 1/BB/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
HL_4V6Q_090 | 1/BB/2027:2036 | No text annotation Not in a motif group | ||
HL_4V6Q_091 | 1/BB/2142:2149 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_86373.2 | |
HL_4V6Q_092 | 1/BB/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
HL_4V6Q_093 | 1/BB/2246:2258 | No text annotation Not in a motif group | ||
HL_4V6Q_094 | 1/BB/2264:2276 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
HL_4V6Q_095 | 1/BB/2302:2314 | No text annotation Not in a motif group | ||
HL_4V6Q_096 | 1/BB/2324:2331 | No text annotation Not in a motif group | homologous HL_7A0S_055 HL_12078.2 | |
HL_4V6Q_097 | 1/BB/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
HL_4V6Q_098 | 1/BB/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
HL_4V6Q_099 | 1/BB/2404:2413 | No text annotation Not in a motif group | ||
HL_4V6Q_100 | 1/BB/2471:2479 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
HL_4V6Q_101 | 1/BB/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
HL_4V6Q_102 | 1/BB/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
HL_4V6Q_103 | 1/BB/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
HL_4V6Q_104 | 1/BB/2658:2663 | GNRA Not in a motif group | geometric HL_3SUX_002 HL_42097.1 | |
HL_4V6Q_105 | 1/BB/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_7A0S_064 HL_46680.1 | |
HL_4V6Q_106 | 1/BB/2745:2759 | No text annotation Not in a motif group | homologous HL_7A0S_065 HL_56677.7 | |
HL_4V6Q_107 | 1/BB/2796:2800 | No text annotation Not in a motif group | geometric HL_7RQB_009 HL_89098.1 | |
HL_4V6Q_108 | 1/BB/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
HL_4V6Q_109 | 1/BB/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 |
Problematic loops
No problematic loops
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_4V6Q_001 | 1/AA/28:33, 1/AA/551:555 | No text annotation Not in a motif group | ||
IL_4V6Q_002 | 1/AA/43:45, 1/AA/396:399 | No text annotation Not in a motif group | geometric IL_1XJR_003 IL_10023.1 | |
IL_4V6Q_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | ||
IL_4V6Q_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
IL_4V6Q_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
IL_4V6Q_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
IL_4V6Q_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
IL_4V6Q_008 | 1/AA/75:77, 1/AA/92:95 | Single bulged G, near cWW Not in a motif group | homologous IL_5J7L_008 IL_82068.2 | |
IL_4V6Q_009 | 1/AA/128:131, 1/AA/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_82068.2 | |
IL_4V6Q_010 | 1/AA/132:136, 1/AA/227:230 | No text annotation Not in a motif group | ||
IL_4V6Q_011 | 1/AA/137:139, 1/AA/224:226 | No text annotation Not in a motif group | geometric IL_1NBS_006 IL_95997.1 | |
IL_4V6Q_012 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair Not in a motif group | geometric IL_6IA2_003 IL_51629.2 | |
IL_4V6Q_013 | 1/AA/146:153, 1/AA/168:176 | No text annotation Not in a motif group | ||
IL_4V6Q_014 | 1/AA/203:207, 1/AA/212:214 | No text annotation Not in a motif group | ||
IL_4V6Q_015 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
IL_4V6Q_016 | 1/AA/248:253, 1/AA/273:276 | No text annotation Not in a motif group | ||
IL_4V6Q_017 | 1/AA/292:293, 1/AA/304:308 | No text annotation Not in a motif group | ||
IL_4V6Q_018 | 1/AA/367:369, 1/AA/392:393 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.13 | |
IL_4V6Q_019 | 1/AA/371:376, 1/AA/387:390 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
IL_4V6Q_020 | 1/AA/408:416, 1/AA/427:434 | No text annotation Not in a motif group | ||
IL_4V6Q_021 | 1/AA/440:442, 1/AA/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
IL_4V6Q_022 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_88269.3 | |
IL_4V6Q_023 | 1/AA/450:455, 1/AA/477:483 | No text annotation Not in a motif group | ||
IL_4V6Q_024 | 1/AA/456:460, 1/AA/471:476 | No text annotation Not in a motif group | ||
IL_4V6Q_025 | 1/AA/460:462, 1/AA/470:471 | Single stack bend Not in a motif group | geometric IL_7KGA_006 IL_76488.2 | |
IL_4V6Q_026 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
IL_4V6Q_027 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
IL_4V6Q_028 | 1/AA/569:575, 1/AA/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
IL_4V6Q_029 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
IL_4V6Q_030 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
IL_4V6Q_031 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
IL_4V6Q_032 | 1/AA/605:612, 1/AA/628:633 | No text annotation Not in a motif group | ||
IL_4V6Q_033 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_50694.2 | |
IL_4V6Q_034 | 1/AA/659:660, 1/AA/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
IL_4V6Q_035 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
IL_4V6Q_036 | 1/AA/673:678, 1/AA/712:717 | No text annotation Not in a motif group | homologous IL_6CZR_142 IL_04668.1 | |
IL_4V6Q_037 | 1/AA/684:688, 1/AA/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
IL_4V6Q_038 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | geometric IL_5J7L_036 IL_29346.1 | |
IL_4V6Q_039 | 1/AA/778:783, 1/AA/799:804 | No text annotation Not in a motif group | ||
IL_4V6Q_040 | 1/AA/833:835, 1/AA/851:853 | No text annotation Not in a motif group | geometric IL_2ZNI_001 IL_51629.2 | |
IL_4V6Q_041 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
IL_4V6Q_042 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
IL_4V6Q_043 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
IL_4V6Q_044 | 1/AA/953:955, 1/AA/1225:1228 | No text annotation Not in a motif group | geometric IL_7A0S_092 IL_82842.2 | |
IL_4V6Q_045 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform Not in a motif group | homologous IL_5J7L_043 IL_47078.1 | |
IL_4V6Q_046 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
IL_4V6Q_047 | 1/AA/1048:1056, 1/AA/1204:1209 | No text annotation Not in a motif group | ||
IL_4V6Q_048 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
IL_4V6Q_049 | 1/AA/1060:1061, 1/AA/1195:1197 | No text annotation Not in a motif group | ||
IL_4V6Q_050 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | homologous IL_6CZR_157 IL_95997.1 | |
IL_4V6Q_051 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
IL_4V6Q_052 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
IL_4V6Q_053 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
IL_4V6Q_054 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
IL_4V6Q_055 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | ||
IL_4V6Q_056 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
IL_4V6Q_057 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
IL_4V6Q_058 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
IL_4V6Q_059 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | homologous IL_5J7L_059 NA | |
IL_4V6Q_060 | 1/AA/1405:1409, 1/AA/1491:1496 | No text annotation Not in a motif group | homologous IL_5J7L_060 NA | |
IL_4V6Q_061 | 1/AA/1412:1416, 1/AA/1484:1488 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
IL_4V6Q_062 | 1/AA/1416:1421, 1/AA/1479:1484 | No text annotation Not in a motif group | ||
IL_4V6Q_063 | 1/AA/1430:1435, 1/AA/1466:1470 | No text annotation Not in a motif group | ||
IL_4V6Q_064 | 1/AA/1438:1443, 1/AA/1459:1463 | No text annotation Not in a motif group | ||
IL_4V6Q_065 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 | |
IL_4V6Q_066 | 1/BA/17:18, 1/BA/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
IL_4V6Q_067 | 1/BA/23:28, 1/BA/56:60 | No text annotation Not in a motif group | ||
IL_4V6Q_068 | 1/BA/30:31, 1/BA/51:54 | Minor groove platform Not in a motif group | geometric IL_3MXH_005 IL_15052.1 | |
IL_4V6Q_069 | 1/BA/71:79, 1/BA/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
IL_4V6Q_070 | 1/BB/24:30, 1/BB/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7RQB_001 IL_66414.6 | |
IL_4V6Q_071 | 1/BB/36:37, 1/BB/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
IL_4V6Q_072 | 1/BB/43:44, 1/BB/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
IL_4V6Q_073 | 1/BB/80:85, 1/BB/97:106 | No text annotation Not in a motif group | ||
IL_4V6Q_074 | 1/BB/188:194, 1/BB/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
IL_4V6Q_075 | 1/BB/239:245, 1/BB/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
IL_4V6Q_076 | 1/BB/269:271, 1/BB/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
IL_4V6Q_077 | 1/BB/274:281, 1/BB/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
IL_4V6Q_078 | 1/BB/292:295, 1/BB/343:348 | No text annotation Not in a motif group | ||
IL_4V6Q_079 | 1/BB/481:484, 1/BB/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
IL_4V6Q_080 | 1/BB/536:539, 1/BB/554:557 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
IL_4V6Q_081 | 1/BB/564:566, 1/BB/575:577 | No text annotation Not in a motif group | homologous IL_7RQB_015 IL_95997.1 | |
IL_4V6Q_082 | 1/BB/606:610, 1/BB/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
IL_4V6Q_083 | 1/BB/671:674, 1/BB/806:809 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.2 | |
IL_4V6Q_084 | 1/BB/674:678, 1/BB/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_5J7L_260 IL_17470.6 | |
IL_4V6Q_085 | 1/BB/694:696, 1/BB/766:768 | No text annotation Not in a motif group | ||
IL_4V6Q_086 | 1/BB/697:698, 1/BB/763:765 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.2 | |
IL_4V6Q_087 | 1/BB/702:707, 1/BB/724:730 | Quadruple sheared Not in a motif group | geometric IL_3FTF_001 IL_06136.1 | |
IL_4V6Q_088 | 1/BB/738:740, 1/BB/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
IL_4V6Q_089 | 1/BB/775:777, 1/BB/787:791 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.6 | |
IL_4V6Q_090 | 1/BB/843:845, 1/BB/934:935 | Single stack bend Not in a motif group | geometric IL_5J7L_249 IL_76488.2 | |
IL_4V6Q_091 | 1/BB/845:848, 1/BB/930:934 | No text annotation Not in a motif group | ||
IL_4V6Q_092 | 1/BB/849:851, 1/BB/926:929 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
IL_4V6Q_093 | 1/BB/856:862, 1/BB/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
IL_4V6Q_094 | 1/BB/862:863, 1/BB/913:915 | Minor groove platform Not in a motif group | geometric IL_4WF9_032 IL_42622.2 | |
IL_4V6Q_095 | 1/BB/864:868, 1/BB/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
IL_4V6Q_096 | 1/BB/870:872, 1/BB/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
IL_4V6Q_097 | 1/BB/875:879, 1/BB/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
IL_4V6Q_098 | 1/BB/880:881, 1/BB/895:897 | No text annotation Not in a motif group | ||
IL_4V6Q_099 | 1/BB/881:884, 1/BB/892:895 | No text annotation Not in a motif group | ||
IL_4V6Q_100 | 1/BB/994:996, 1/BB/1159:1160 | Single bulged C Not in a motif group | homologous IL_7A0S_032 IL_61258.12 | |
IL_4V6Q_101 | 1/BB/998:1002, 1/BB/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
IL_4V6Q_102 | 1/BB/1004:1011, 1/BB/1150:1151 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
IL_4V6Q_103 | 1/BB/1011:1013, 1/BB/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.13 | |
IL_4V6Q_104 | 1/BB/1018:1024, 1/BB/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
IL_4V6Q_105 | 1/BB/1024:1030, 1/BB/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
IL_4V6Q_106 | 1/BB/1031:1034, 1/BB/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_041 IL_82068.2 | |
IL_4V6Q_107 | 1/BB/1038:1041, 1/BB/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
IL_4V6Q_108 | 1/BB/1043:1051, 1/BB/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.4 | |
IL_4V6Q_109 | 1/BB/1059:1062, 1/BB/1076:1079 | No text annotation Not in a motif group | homologous IL_6PRV_001 IL_23544.2 | |
IL_4V6Q_110 | 1/BB/1087:1090, 1/BB/1101:1102 | Major groove platform Not in a motif group | geometric IL_3OXE_003 IL_27635.1 | |
IL_4V6Q_111 | 1/BB/1196:1199, 1/BB/1246:1250 | No text annotation Not in a motif group | ||
IL_4V6Q_112 | 1/BB/1202:1207, 1/BB/1239:1243 | No text annotation Not in a motif group | ||
IL_4V6Q_113 | 1/BB/1208:1215, 1/BB/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
IL_4V6Q_114 | 1/BB/1262:1269, 1/BB/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
IL_4V6Q_115 | 1/BB/1310:1313, 1/BB/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.2 | |
IL_4V6Q_116 | 1/BB/1319:1324, 1/BB/1330:1333 | No text annotation Not in a motif group | ||
IL_4V6Q_117 | 1/BB/1351:1355, 1/BB/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
IL_4V6Q_118 | 1/BB/1357:1361, 1/BB/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
IL_4V6Q_119 | 1/BB/1414:1416, 1/BB/1582:1588 | No text annotation Not in a motif group | ||
IL_4V6Q_120 | 1/BB/1417:1421, 1/BB/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
IL_4V6Q_121 | 1/BB/1431:1435, 1/BB/1557:1562 | No text annotation Not in a motif group | ||
IL_4V6Q_122 | 1/BB/1437:1440, 1/BB/1551:1555 | No text annotation Not in a motif group | ||
IL_4V6Q_123 | 1/BB/1468:1471, 1/BB/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
IL_4V6Q_124 | 1/BB/1473:1478, 1/BB/1513:1518 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
IL_4V6Q_125 | 1/BB/1481:1484, 1/BB/1505:1510 | No text annotation Not in a motif group | ||
IL_4V6Q_126 | 1/BB/1489:1491, 1/BB/1499:1500 | Single bulged A Not in a motif group | geometric IL_4V9F_032 IL_37497.2 | |
IL_4V6Q_127 | 1/BB/1526:1529, 1/BB/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
IL_4V6Q_128 | 1/BB/1651:1656, 1/BB/2004:2006 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.2 | |
IL_4V6Q_129 | 1/BB/1663:1665, 1/BB/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
IL_4V6Q_130 | 1/BB/1666:1669, 1/BB/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
IL_4V6Q_131 | 1/BB/1669:1674, 1/BB/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
IL_4V6Q_132 | 1/BB/1686:1691, 1/BB/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7A0S_063 IL_65969.2 | |
IL_4V6Q_133 | 1/BB/1712:1718, 1/BB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
IL_4V6Q_134 | 1/BB/1720:1726, 1/BB/1734:1740 | No text annotation Not in a motif group | ||
IL_4V6Q_135 | 1/BB/1727:1728, 1/BB/1731:1733 | Single bulged C Not in a motif group | geometric IL_5J7L_311 IL_61258.12 | |
IL_4V6Q_136 | 1/BB/1770:1771, 1/BB/1980:1982 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
IL_4V6Q_137 | 1/BB/1798:1804, 1/BB/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
IL_4V6Q_138 | 1/BB/1837:1840, 1/BB/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
IL_4V6Q_139 | 1/BB/1840:1842, 1/BB/1898:1902 | No text annotation Not in a motif group | ||
IL_4V6Q_140 | 1/BB/1846:1851, 1/BB/1891:1894 | No text annotation Not in a motif group | ||
IL_4V6Q_141 | 1/BB/1851:1860, 1/BB/1882:1891 | No text annotation Not in a motif group | ||
IL_4V6Q_142 | 1/BB/1861:1863, 1/BB/1879:1881 | Isolated cWS basepair Not in a motif group | geometric IL_5TBW_047 IL_52767.2 | |
IL_4V6Q_143 | 1/BB/1864:1867, 1/BB/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
IL_4V6Q_144 | 1/BB/1933:1934, 1/BB/1964:1967 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_003 IL_69996.1 | |
IL_4V6Q_145 | 1/BB/1934:1945, 1/BB/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
IL_4V6Q_146 | 1/BB/2050:2052, 1/BB/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
IL_4V6Q_147 | 1/BB/2053:2056, 1/BB/2612:2616 | No text annotation Not in a motif group | ||
IL_4V6Q_148 | 1/BB/2064:2066, 1/BB/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
IL_4V6Q_149 | 1/BB/2067:2071, 1/BB/2438:2443 | No text annotation Not in a motif group | ||
IL_4V6Q_150 | 1/BB/2081:2083, 1/BB/2236:2239 | No text annotation Not in a motif group | ||
IL_4V6Q_151 | 1/BB/2084:2087, 1/BB/2232:2235 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
IL_4V6Q_152 | 1/BB/2103:2105, 1/BB/2184:2186 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_52767.2 | |
IL_4V6Q_153 | 1/BB/2106:2110, 1/BB/2179:2183 | No text annotation Not in a motif group | ||
IL_4V6Q_154 | 1/BB/2202:2204, 1/BB/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
IL_4V6Q_155 | 1/BB/2350:2353, 1/BB/2364:2367 | Double sheared Not in a motif group | homologous IL_4WF9_087 IL_09705.9 | |
IL_4V6Q_156 | 1/BB/2401:2403, 1/BB/2414:2415 | Single bulged U Not in a motif group | geometric IL_6UFH_004 IL_83039.13 | |
IL_4V6Q_157 | 1/BB/2456:2459, 1/BB/2493:2495 | No text annotation Not in a motif group | ||
IL_4V6Q_158 | 1/BB/2459:2461, 1/BB/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_337 IL_92788.2 | |
IL_4V6Q_159 | 1/BB/2466:2470, 1/BB/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
IL_4V6Q_160 | 1/BB/2507:2509, 1/BB/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
IL_4V6Q_161 | 1/BB/2510:2512, 1/BB/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
IL_4V6Q_162 | 1/BB/2512:2513, 1/BB/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
IL_4V6Q_163 | 1/BB/2521:2523, 1/BB/2540:2544 | No text annotation Not in a motif group | ||
IL_4V6Q_164 | 1/BB/2588:2590, 1/BB/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
IL_4V6Q_165 | 1/BB/2591:2592, 1/BB/2601:2603 | Single bulged A Not in a motif group | geometric IL_7RQB_048 IL_37497.2 | |
IL_4V6Q_166 | 1/BB/2636:2640, 1/BB/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
IL_4V6Q_167 | 1/BB/2652:2658, 1/BB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7A0S_094 IL_16458.1 | |
IL_4V6Q_168 | 1/BB/2680:2684, 1/BB/2725:2727 | C-loop Not in a motif group | homologous IL_7A0S_095 IL_63596.6 | |
IL_4V6Q_169 | 1/BB/2687:2691, 1/BB/2718:2722 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
IL_4V6Q_170 | 1/BB/2695:2696, 1/BB/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
IL_4V6Q_171 | 1/BB/2737:2742, 1/BB/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
IL_4V6Q_172 | 1/BB/2806:2811, 1/BB/2889:2892 | No text annotation Not in a motif group | ||
IL_4V6Q_173 | 1/BB/2815:2818, 1/BB/2828:2831 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1JID_002 IL_30621.2 | |
IL_4V6Q_174 | 1/BB/2838:2839, 1/BB/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
IL_4V6Q_175 | 1/BB/2843:2846, 1/BB/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
IL_4V6Q_176 | 1/BB/2847:2852, 1/BB/2865:2869 | No text annotation Not in a motif group | homologous IL_7A0S_101 IL_83162.5 |
Problematic loops
No problematic loops
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_4V6Q_001 | 1/AA/45:47, 1/AA/361:367, 1/AA/393:396 | No text annotation Not in a motif group | ||
J3_4V6Q_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation Not in a motif group | ||
J3_4V6Q_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation Not in a motif group | ||
J3_4V6Q_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
J3_4V6Q_005 | 1/AA/941:946, 1/AA/1235:1237, 1/AA/1337:1342 | No text annotation Not in a motif group | ||
J3_4V6Q_006 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation Not in a motif group | ||
J3_4V6Q_007 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | ||
J3_4V6Q_008 | 1/AA/1003:1006, 1/AA/1023:1027, 1/AA/1034:1037 | No text annotation Not in a motif group | ||
J3_4V6Q_009 | 1/AA/1063:1068, 1/AA/1107:1114, 1/AA/1186:1193 | No text annotation Not in a motif group | ||
J3_4V6Q_010 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation Not in a motif group | ||
J3_4V6Q_011 | 1/AA/1116:1120, 1/AA/1153:1158, 1/AA/1181:1184 | No text annotation Not in a motif group | ||
J3_4V6Q_012 | 1/AA/1237:1242, 1/AA/1295:1303, 1/AA/1334:1337 | No text annotation Not in a motif group | ||
J3_4V6Q_013 | 1/BA/10:16, 1/BA/68:70, 1/BA/106:110 | No text annotation Not in a motif group | ||
J3_4V6Q_014 | 1/BB/30:31, 1/BB/474:481, 1/BB/509:510 | No text annotation Not in a motif group | homologous J3_7A0S_001 NA | |
J3_4V6Q_015 | 1/BB/55:57, 1/BB/70:76, 1/BB/110:115 | No text annotation Not in a motif group | ||
J3_4V6Q_016 | 1/BB/683:689, 1/BB/773:775, 1/BB/791:794 | No text annotation Not in a motif group | ||
J3_4V6Q_017 | 1/BB/698:700, 1/BB/732:736, 1/BB/760:763 | No text annotation Not in a motif group | ||
J3_4V6Q_018 | 1/BB/1055:1058, 1/BB/1080:1087, 1/BB/1102:1104 | No text annotation Not in a motif group | ||
J3_4V6Q_019 | 1/BB/1298:1303, 1/BB/1625:1627, 1/BB/1639:1642 | No text annotation Not in a motif group | ||
J3_4V6Q_020 | 1/BB/1306:1309, 1/BB/1605:1611, 1/BB/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
J3_4V6Q_021 | 1/BB/1344:1350, 1/BB/1381:1385, 1/BB/1402:1403 | No text annotation Not in a motif group | ||
J3_4V6Q_022 | 1/BB/2091:2093, 1/BB/2196:2200, 1/BB/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
J3_4V6Q_023 | 1/BB/2295:2299, 1/BB/2317:2323, 1/BB/2332:2337 | No text annotation Not in a motif group | ||
J3_4V6Q_024 | 1/BB/2517:2521, 1/BB/2544:2547, 1/BB/2561:2567 | No text annotation Not in a motif group | ||
J3_4V6Q_025 | 1/BB/2789:2791, 1/BB/2805:2806, 1/BB/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
J3_4V6Q_026 | 1/BB/2812:2815, 1/BB/2831:2836, 1/BB/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA |
Problematic loops
No problematic loops
Coloring options: