4V6Q Internal, hairpin and 3-way junction loop motifs
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/AA/28:33,1/AA/551:555 | NA |
2 | ➜ | 1/AA/43:45,1/AA/396:399 | NA |
3 | ➜ | 1/AA/47:52,1/AA/359:361 | NA |
4 | ➜ | 1/AA/54:56,1/AA/356:357 | NA |
5 | ➜ | 1/AA/63:66,1/AA/103:104 | NA |
6 | ➜ | 1/AA/67:69,1/AA/99:102 | NA |
7 | ➜ | 1/AA/70:73,1/AA/97:98 | NA |
8 | ➜ | 1/AA/75:77,1/AA/92:95 | NA |
9 | ➜ | 1/AA/128:131,1/AA/231:233 | NA |
10 | ➜ | 1/AA/132:136,1/AA/227:230 | NA |
11 | ➜ | 1/AA/137:139,1/AA/224:226 | NA |
12 | ➜ | 1/AA/144:146,1/AA/176:178 | NA |
13 | ➜ | 1/AA/146:153,1/AA/168:176 | NA |
14 | ➜ | 1/AA/203:207,1/AA/212:214 | NA |
15 | ➜ | 1/AA/242:247,1/AA/277:284 | NA |
16 | ➜ | 1/AA/248:253,1/AA/273:276 | NA |
17 | ➜ | 1/AA/292:293,1/AA/304:308 | NA |
18 | ➜ | 1/AA/367:369,1/AA/392:393 | NA |
19 | ➜ | 1/AA/371:376,1/AA/387:390 | NA |
20 | ➜ | 1/AA/408:416,1/AA/427:434 | NA |
21 | ➜ | 1/AA/440:442,1/AA/492:497 | NA |
22 | ➜ | 1/AA/446:450,1/AA/483:488 | NA |
23 | ➜ | 1/AA/450:455,1/AA/477:483 | NA |
24 | ➜ | 1/AA/456:460,1/AA/471:476 | NA |
25 | ➜ | 1/AA/460:462,1/AA/470:471 | NA |
26 | ➜ | 1/AA/504:511,1/AA/540:541 | NA |
27 | ➜ | 1/AA/515:521,1/AA/528:536 | NA |
28 | ➜ | 1/AA/569:575,1/AA/880:881 | NA |
29 | ➜ | 1/AA/580:584,1/AA/757:761 | NA |
30 | ➜ | 1/AA/594:596,1/AA/644:645 | NA |
31 | ➜ | 1/AA/597:598,1/AA/640:643 | NA |
32 | ➜ | 1/AA/605:612,1/AA/628:633 | NA |
33 | ➜ | 1/AA/654:655,1/AA/751:754 | NA |
34 | ➜ | 1/AA/659:660,1/AA/745:747 | NA |
35 | ➜ | 1/AA/662:666,1/AA/740:743 | NA |
36 | ➜ | 1/AA/673:678,1/AA/712:717 | NA |
37 | ➜ | 1/AA/684:688,1/AA/699:706 | NA |
38 | ➜ | 1/AA/774:778,1/AA/804:805 | NA |
39 | ➜ | 1/AA/778:783,1/AA/799:804 | NA |
40 | ➜ | 1/AA/833:835,1/AA/851:853 | NA |
41 | ➜ | 1/AA/887:894,1/AA/905:910 | NA |
42 | ➜ | 1/AA/925:927,1/AA/1390:1391 | NA |
43 | ➜ | 1/AA/933:935,1/AA/1380:1384 | NA |
44 | ➜ | 1/AA/953:955,1/AA/1225:1228 | NA |
45 | ➜ | 1/AA/993:997,1/AA/1044:1045 | NA |
46 | ➜ | 1/AA/998:999,1/AA/1041:1043 | NA |
47 | ➜ | 1/AA/1048:1056,1/AA/1204:1209 | NA |
48 | ➜ | 1/AA/1057:1058,1/AA/1199:1203 | NA |
49 | ➜ | 1/AA/1060:1061,1/AA/1195:1197 | NA |
50 | ➜ | 1/AA/1061:1063,1/AA/1193:1195 | NA |
51 | ➜ | 1/AA/1124:1128,1/AA/1144:1149 | NA |
52 | ➜ | 1/AA/1129:1132,1/AA/1142:1143 | NA |
53 | ➜ | 1/AA/1158:1161,1/AA/1175:1181 | NA |
54 | ➜ | 1/AA/1247:1253,1/AA/1284:1290 | NA |
55 | ➜ | 1/AA/1255:1258,1/AA/1277:1282 | NA |
56 | ➜ | 1/AA/1259:1263,1/AA/1272:1276 | NA |
57 | ➜ | 1/AA/1303:1308,1/AA/1329:1334 | NA |
58 | ➜ | 1/AA/1399:1401,1/AA/1501:1504 | NA |
59 | ➜ | 1/AA/1401:1404,1/AA/1497:1501 | NA |
60 | ➜ | 1/AA/1405:1409,1/AA/1491:1496 | NA |
61 | ➜ | 1/AA/1412:1416,1/AA/1484:1488 | NA |
62 | ➜ | 1/AA/1416:1421,1/AA/1479:1484 | NA |
63 | ➜ | 1/AA/1430:1435,1/AA/1466:1470 | NA |
64 | ➜ | 1/AA/1438:1443,1/AA/1459:1463 | NA |
65 | ➜ | 1/AA/1445:1448,1/AA/1455:1457 | NA |
66 | ➜ | 1/BA/17:18,1/BA/65:67 | NA |
67 | ➜ | 1/BA/23:28,1/BA/56:60 | NA |
68 | ➜ | 1/BA/30:31,1/BA/51:54 | NA |
69 | ➜ | 1/BA/71:79,1/BA/97:105 | NA |
70 | ➜ | 1/BB/24:30,1/BB/510:516 | NA |
71 | ➜ | 1/BB/36:37,1/BB/442:444 | NA |
72 | ➜ | 1/BB/43:44,1/BB/434:436 | NA |
73 | ➜ | 1/BB/80:85,1/BB/97:106 | NA |
74 | ➜ | 1/BB/188:194,1/BB/201:208 | NA |
75 | ➜ | 1/BB/239:245,1/BB/253:258 | NA |
76 | ➜ | 1/BB/269:271,1/BB/366:370 | NA |
77 | ➜ | 1/BB/274:281,1/BB/359:363 | NA |
78 | ➜ | 1/BB/292:295,1/BB/343:348 | NA |
79 | ➜ | 1/BB/481:484,1/BB/496:509 | NA |
80 | ➜ | 1/BB/536:539,1/BB/554:557 | NA |
81 | ➜ | 1/BB/564:566,1/BB/575:577 | NA |
82 | ➜ | 1/BB/606:610,1/BB/618:622 | NA |
83 | ➜ | 1/BB/671:674,1/BB/806:809 | NA |
84 | ➜ | 1/BB/674:678,1/BB/799:806 | NA |
85 | ➜ | 1/BB/694:696,1/BB/766:768 | NA |
86 | ➜ | 1/BB/697:698,1/BB/763:765 | NA |
87 | ➜ | 1/BB/702:707,1/BB/724:730 | NA |
88 | ➜ | 1/BB/738:740,1/BB/757:758 | NA |
89 | ➜ | 1/BB/775:777,1/BB/787:791 | NA |
90 | ➜ | 1/BB/843:845,1/BB/934:935 | NA |
91 | ➜ | 1/BB/845:848,1/BB/930:934 | NA |
92 | ➜ | 1/BB/849:851,1/BB/926:929 | NA |
93 | ➜ | 1/BB/856:862,1/BB/915:921 | NA |
94 | ➜ | 1/BB/862:863,1/BB/913:915 | NA |
95 | ➜ | 1/BB/864:868,1/BB/909:912 | NA |
96 | ➜ | 1/BB/870:872,1/BB/905:907 | NA |
97 | ➜ | 1/BB/875:879,1/BB/898:902 | NA |
98 | ➜ | 1/BB/880:881,1/BB/895:897 | NA |
99 | ➜ | 1/BB/881:884,1/BB/892:895 | NA |
100 | ➜ | 1/BB/994:996,1/BB/1159:1160 | NA |
101 | ➜ | 1/BB/998:1002,1/BB/1153:1157 | NA |
102 | ➜ | 1/BB/1004:1011,1/BB/1150:1151 | NA |
103 | ➜ | 1/BB/1011:1013,1/BB/1149:1150 | NA |
104 | ➜ | 1/BB/1018:1024,1/BB/1140:1144 | NA |
105 | ➜ | 1/BB/1024:1030,1/BB/1124:1140 | NA |
106 | ➜ | 1/BB/1031:1034,1/BB/1121:1123 | NA |
107 | ➜ | 1/BB/1038:1041,1/BB/1114:1117 | NA |
108 | ➜ | 1/BB/1043:1051,1/BB/1108:1112 | NA |
109 | ➜ | 1/BB/1059:1062,1/BB/1076:1079 | NA |
110 | ➜ | 1/BB/1087:1090,1/BB/1101:1102 | NA |
111 | ➜ | 1/BB/1196:1199,1/BB/1246:1250 | NA |
112 | ➜ | 1/BB/1202:1207,1/BB/1239:1243 | NA |
113 | ➜ | 1/BB/1208:1215,1/BB/1234:1238 | NA |
114 | ➜ | 1/BB/1262:1269,1/BB/2011:2017 | NA |
115 | ➜ | 1/BB/1310:1313,1/BB/1603:1604 | NA |
116 | ➜ | 1/BB/1319:1324,1/BB/1330:1333 | NA |
117 | ➜ | 1/BB/1351:1355,1/BB/1376:1380 | NA |
118 | ➜ | 1/BB/1357:1361,1/BB/1370:1374 | NA |
119 | ➜ | 1/BB/1414:1416,1/BB/1582:1588 | NA |
120 | ➜ | 1/BB/1417:1421,1/BB/1577:1581 | NA |
121 | ➜ | 1/BB/1431:1435,1/BB/1557:1562 | NA |
122 | ➜ | 1/BB/1437:1440,1/BB/1551:1555 | NA |
123 | ➜ | 1/BB/1468:1471,1/BB/1520:1524 | NA |
124 | ➜ | 1/BB/1473:1478,1/BB/1513:1518 | NA |
125 | ➜ | 1/BB/1481:1484,1/BB/1505:1510 | NA |
126 | ➜ | 1/BB/1489:1491,1/BB/1499:1500 | NA |
127 | ➜ | 1/BB/1526:1529,1/BB/1542:1546 | NA |
128 | ➜ | 1/BB/1651:1656,1/BB/2004:2006 | NA |
129 | ➜ | 1/BB/1663:1665,1/BB/1995:1997 | NA |
130 | ➜ | 1/BB/1666:1669,1/BB/1993:1994 | NA |
131 | ➜ | 1/BB/1669:1674,1/BB/1990:1993 | NA |
132 | ➜ | 1/BB/1686:1691,1/BB/1696:1702 | NA |
133 | ➜ | 1/BB/1712:1718,1/BB/1742:1746 | NA |
134 | ➜ | 1/BB/1720:1726,1/BB/1734:1740 | NA |
135 | ➜ | 1/BB/1727:1728,1/BB/1731:1733 | NA |
136 | ➜ | 1/BB/1770:1771,1/BB/1980:1982 | NA |
137 | ➜ | 1/BB/1798:1804,1/BB/1813:1821 | NA |
138 | ➜ | 1/BB/1837:1840,1/BB/1902:1903 | NA |
139 | ➜ | 1/BB/1840:1842,1/BB/1898:1902 | NA |
140 | ➜ | 1/BB/1846:1851,1/BB/1891:1894 | NA |
141 | ➜ | 1/BB/1851:1860,1/BB/1882:1891 | NA |
142 | ➜ | 1/BB/1861:1863,1/BB/1879:1881 | NA |
143 | ➜ | 1/BB/1864:1867,1/BB/1874:1878 | NA |
144 | ➜ | 1/BB/1933:1934,1/BB/1964:1967 | NA |
145 | ➜ | 1/BB/1934:1945,1/BB/1961:1964 | NA |
146 | ➜ | 1/BB/2050:2052,1/BB/2617:2618 | NA |
147 | ➜ | 1/BB/2053:2056,1/BB/2612:2616 | NA |
148 | ➜ | 1/BB/2064:2066,1/BB/2444:2446 | NA |
149 | ➜ | 1/BB/2067:2071,1/BB/2438:2443 | NA |
150 | ➜ | 1/BB/2081:2083,1/BB/2236:2239 | NA |
151 | ➜ | 1/BB/2084:2087,1/BB/2232:2235 | NA |
152 | ➜ | 1/BB/2103:2105,1/BB/2184:2186 | NA |
153 | ➜ | 1/BB/2106:2110,1/BB/2179:2183 | NA |
154 | ➜ | 1/BB/2202:2204,1/BB/2220:2221 | NA |
155 | ➜ | 1/BB/2350:2353,1/BB/2364:2367 | NA |
156 | ➜ | 1/BB/2401:2403,1/BB/2414:2415 | NA |
157 | ➜ | 1/BB/2456:2459,1/BB/2493:2495 | NA |
158 | ➜ | 1/BB/2459:2461,1/BB/2489:2493 | NA |
159 | ➜ | 1/BB/2466:2470,1/BB/2480:2484 | NA |
160 | ➜ | 1/BB/2507:2509,1/BB/2579:2582 | NA |
161 | ➜ | 1/BB/2510:2512,1/BB/2574:2578 | NA |
162 | ➜ | 1/BB/2512:2513,1/BB/2571:2574 | NA |
163 | ➜ | 1/BB/2521:2523,1/BB/2540:2544 | NA |
164 | ➜ | 1/BB/2588:2590,1/BB/2604:2606 | NA |
165 | ➜ | 1/BB/2591:2592,1/BB/2601:2603 | NA |
166 | ➜ | 1/BB/2636:2640,1/BB/2774:2782 | NA |
167 | ➜ | 1/BB/2652:2658,1/BB/2663:2668 | NA |
168 | ➜ | 1/BB/2680:2684,1/BB/2725:2727 | NA |
169 | ➜ | 1/BB/2687:2691,1/BB/2718:2722 | NA |
170 | ➜ | 1/BB/2695:2696,1/BB/2711:2714 | NA |
171 | ➜ | 1/BB/2737:2742,1/BB/2762:2767 | NA |
172 | ➜ | 1/BB/2806:2811,1/BB/2889:2892 | NA |
173 | ➜ | 1/BB/2815:2818,1/BB/2828:2831 | NA |
174 | ➜ | 1/BB/2838:2839,1/BB/2878:2880 | NA |
175 | ➜ | 1/BB/2843:2846,1/BB/2870:2874 | NA |
176 | ➜ | 1/BB/2847:2852,1/BB/2865:2869 | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/AA/12:22 | NA |
2 | ➜ | 1/AA/82:87 | NA |
3 | ➜ | 1/AA/158:163 | NA |
4 | ➜ | 1/AA/186:191 | NA |
5 | ➜ | 1/AA/207:212 | NA |
6 | ➜ | 1/AA/259:267 | NA |
7 | ➜ | 1/AA/296:301 | NA |
8 | ➜ | 1/AA/320:333 | NA |
9 | ➜ | 1/AA/342:347 | NA |
10 | ➜ | 1/AA/379:384 | NA |
11 | ➜ | 1/AA/419:424 | NA |
12 | ➜ | 1/AA/462:470 | NA |
13 | ➜ | 1/AA/521:528 | NA |
14 | ➜ | 1/AA/617:623 | NA |
15 | ➜ | 1/AA/689:698 | NA |
16 | ➜ | 1/AA/726:731 | NA |
17 | ➜ | 1/AA/785:797 | NA |
18 | ➜ | 1/AA/840:846 | NA |
19 | ➜ | 1/AA/862:867 | NA |
20 | ➜ | 1/AA/897:902 | NA |
21 | ➜ | 1/AA/963:972 | NA |
22 | ➜ | 1/AA/1012:1017 | NA |
23 | ➜ | 1/AA/1028:1033 | NA |
24 | ➜ | 1/AA/1074:1083 | NA |
25 | ➜ | 1/AA/1089:1096 | NA |
26 | ➜ | 1/AA/1134:1140 | NA |
27 | ➜ | 1/AA/1165:1171 | NA |
28 | ➜ | 1/AA/1265:1270 | NA |
29 | ➜ | 1/AA/1314:1323 | NA |
30 | ➜ | 1/AA/1356:1366 | NA |
31 | ➜ | 1/AA/1449:1454 | NA |
32 | ➜ | 1/AA/1515:1520 | NA |
33 | ➜ | 1/AB/13:22 | NA |
34 | ➜ | 1/AB/30:40 | NA |
35 | ➜ | 1/AB/52:62 | NA |
36 | ➜ | 1/AD/13:23 | NA |
37 | ➜ | 1/AD/32:40 | NA |
38 | ➜ | 1/AD/54:62 | NA |
39 | ➜ | 1/BA/34:48 | NA |
40 | ➜ | 1/BA/85:91 | NA |
41 | ➜ | 1/BB/59:68 | NA |
42 | ➜ | 1/BB/86:96 | NA |
43 | ➜ | 1/BB/123:128 | NA |
44 | ➜ | 1/BB/137:142 | NA |
45 | ➜ | 1/BB/158:168 | NA |
46 | ➜ | 1/BB/194:201 | NA |
47 | ➜ | 1/BB/225:230 | NA |
48 | ➜ | 1/BB/246:252 | NA |
49 | ➜ | 1/BB/305:312 | NA |
50 | ➜ | 1/BB/319:323 | NA |
51 | ➜ | 1/BB/327:335 | NA |
52 | ➜ | 1/BB/381:393 | NA |
53 | ➜ | 1/BB/409:418 | NA |
54 | ➜ | 1/BB/462:467 | NA |
55 | ➜ | 1/BB/487:493 | NA |
56 | ➜ | 1/BB/543:550 | NA |
57 | ➜ | 1/BB/566:575 | NA |
58 | ➜ | 1/BB/611:617 | NA |
59 | ➜ | 1/BB/629:634 | NA |
60 | ➜ | 1/BB/640:648 | NA |
61 | ➜ | 1/BB/712:719 | NA |
62 | ➜ | 1/BB/744:753 | NA |
63 | ➜ | 1/BB/779:785 | NA |
64 | ➜ | 1/BB/825:832 | NA |
65 | ➜ | 1/BB/885:891 | NA |
66 | ➜ | 1/BB/954:963 | NA |
67 | ➜ | 1/BB/978:985 | NA |
68 | ➜ | 1/BB/1064:1074 | NA |
69 | ➜ | 1/BB/1092:1099 | NA |
70 | ➜ | 1/BB/1172:1177 | NA |
71 | ➜ | 1/BB/1222:1227 | NA |
72 | ➜ | 1/BB/1281:1289 | NA |
73 | ➜ | 1/BB/1324:1330 | NA |
74 | ➜ | 1/BB/1363:1368 | NA |
75 | ➜ | 1/BB/1389:1398 | NA |
76 | ➜ | 1/BB/1450:1461 | NA |
77 | ➜ | 1/BB/1492:1498 | NA |
78 | ➜ | 1/BB/1533:1538 | NA |
79 | ➜ | 1/BB/1565:1568 | NA |
80 | ➜ | 1/BB/1612:1619 | NA |
81 | ➜ | 1/BB/1629:1637 | NA |
82 | ➜ | 1/BB/1691:1696 | NA |
83 | ➜ | 1/BB/1728:1731 | NA |
84 | ➜ | 1/BB/1752:1756 | NA |
85 | ➜ | 1/BB/1777:1787 | NA |
86 | ➜ | 1/BB/1806:1811 | NA |
87 | ➜ | 1/BB/1868:1873 | NA |
88 | ➜ | 1/BB/1910:1920 | NA |
89 | ➜ | 1/BB/1949:1957 | NA |
90 | ➜ | 1/BB/2027:2036 | NA |
91 | ➜ | 1/BB/2142:2149 | NA |
92 | ➜ | 1/BB/2209:2215 | NA |
93 | ➜ | 1/BB/2246:2258 | NA |
94 | ➜ | 1/BB/2264:2276 | NA |
95 | ➜ | 1/BB/2302:2314 | NA |
96 | ➜ | 1/BB/2324:2331 | NA |
97 | ➜ | 1/BB/2356:2361 | NA |
98 | ➜ | 1/BB/2374:2379 | NA |
99 | ➜ | 1/BB/2404:2413 | NA |
100 | ➜ | 1/BB/2471:2479 | NA |
101 | ➜ | 1/BB/2528:2535 | NA |
102 | ➜ | 1/BB/2551:2557 | NA |
103 | ➜ | 1/BB/2594:2599 | NA |
104 | ➜ | 1/BB/2658:2663 | NA |
105 | ➜ | 1/BB/2701:2706 | NA |
106 | ➜ | 1/BB/2745:2759 | NA |
107 | ➜ | 1/BB/2796:2800 | NA |
108 | ➜ | 1/BB/2819:2827 | NA |
109 | ➜ | 1/BB/2856:2861 | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/AA/45:47,1/AA/361:367,1/AA/393:396 | NA |
2 | ➜ | 1/AA/586:588,1/AA/651:654,1/AA/754:755 | NA |
3 | ➜ | 1/AA/672:673,1/AA/717:725,1/AA/732:734 | NA |
4 | ➜ | 1/AA/826:829,1/AA/857:861,1/AA/868:874 | NA |
5 | ➜ | 1/AA/941:946,1/AA/1235:1237,1/AA/1337:1342 | NA |
6 | ➜ | 1/AA/955:962,1/AA/973:984,1/AA/1221:1225 | NA |
7 | ➜ | 1/AA/990:993,1/AA/1045:1047,1/AA/1210:1215 | NA |
8 | ➜ | 1/AA/1003:1006,1/AA/1023:1027,1/AA/1034:1037 | NA |
9 | ➜ | 1/AA/1063:1068,1/AA/1107:1114,1/AA/1186:1193 | NA |
10 | ➜ | 1/AA/1073:1074,1/AA/1083:1087,1/AA/1098:1102 | NA |
11 | ➜ | 1/AA/1116:1120,1/AA/1153:1158,1/AA/1181:1184 | NA |
12 | ➜ | 1/AA/1237:1242,1/AA/1295:1303,1/AA/1334:1337 | NA |
13 | ➜ | 1/BA/10:16,1/BA/68:70,1/BA/106:110 | NA |
14 | ➜ | 1/BB/30:31,1/BB/474:481,1/BB/509:510 | NA |
15 | ➜ | 1/BB/55:57,1/BB/70:76,1/BB/110:115 | NA |
16 | ➜ | 1/BB/683:689,1/BB/773:775,1/BB/791:794 | NA |
17 | ➜ | 1/BB/698:700,1/BB/732:736,1/BB/760:763 | NA |
18 | ➜ | 1/BB/1055:1058,1/BB/1080:1087,1/BB/1102:1104 | NA |
19 | ➜ | 1/BB/1298:1303,1/BB/1625:1627,1/BB/1639:1642 | NA |
20 | ➜ | 1/BB/1306:1309,1/BB/1605:1611,1/BB/1620:1622 | NA |
21 | ➜ | 1/BB/1344:1350,1/BB/1381:1385,1/BB/1402:1403 | NA |
22 | ➜ | 1/BB/2091:2093,1/BB/2196:2200,1/BB/2223:2228 | NA |
23 | ➜ | 1/BB/2295:2299,1/BB/2317:2323,1/BB/2332:2337 | NA |
24 | ➜ | 1/BB/2517:2521,1/BB/2544:2547,1/BB/2561:2567 | NA |
25 | ➜ | 1/BB/2789:2791,1/BB/2805:2806,1/BB/2892:2894 | NA |
26 | ➜ | 1/BB/2812:2815,1/BB/2831:2836,1/BB/2882:2888 | NA |
Problematic loops
No problematic loops
Coloring options: