Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V6Q_0011/AA/12:22No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_4V6Q_0021/AA/82:87No text annotation
Not in a motif group
HL_4V6Q_0031/AA/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_4V6Q_0041/AA/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_4V6Q_0051/AA/207:212UNCG
Not in a motif group
homologous
HL_5J7L_005
HL_03562.2
HL_4V6Q_0061/AA/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_4V6Q_0071/AA/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_4V6Q_0081/AA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4V6Q_0091/AA/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_4V6Q_0101/AA/379:384No text annotation
Not in a motif group
HL_4V6Q_0111/AA/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_4V6Q_0121/AA/462:470No text annotation
Not in a motif group
HL_4V6Q_0131/AA/521:528No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_4V6Q_0141/AA/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_4V6Q_0151/AA/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_4V6Q_0161/AA/726:731No text annotation
Not in a motif group
geometric
HL_4V9F_003
HL_52841.1
HL_4V6Q_0171/AA/785:797No text annotation
Not in a motif group
HL_4V6Q_0181/AA/840:846No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_4V6Q_0191/AA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_4V6Q_0201/AA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_4V6Q_0211/AA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V6Q_0221/AA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_4V6Q_0231/AA/1028:1033UNCG
Not in a motif group
geometric
HL_1I6U_001
HL_03562.2
HL_4V6Q_0241/AA/1074:1083No text annotation
Not in a motif group
HL_4V6Q_0251/AA/1089:1096No text annotation
Not in a motif group
homologous
HL_5J7L_024
HL_71554.2
HL_4V6Q_0261/AA/1134:1140No text annotation
Not in a motif group
HL_4V6Q_0271/AA/1165:1171No text annotation
Not in a motif group
HL_4V6Q_0281/AA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_4V6Q_0291/AA/1314:1323No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_89380.2
HL_4V6Q_0301/AA/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_4V6Q_0311/AA/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_4V6Q_0321/AA/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_4V6Q_0331/AB/13:22No text annotation
Not in a motif group
homologous
HL_4V9K_033
HL_98984.2
HL_4V6Q_0341/AB/30:40No text annotation
Not in a motif group
homologous
HL_5IB8_208
NA
HL_4V6Q_0351/AB/52:62No text annotation
Not in a motif group
homologous
HL_4WQ1_225
NA
HL_4V6Q_0361/AD/13:23No text annotation
Not in a motif group
homologous
HL_4YYE_001
NA
HL_4V6Q_0371/AD/32:40tRNA anticodon loop
Not in a motif group
homologous
HL_6UFM_002
HL_53597.2
HL_4V6Q_0381/AD/54:62No text annotation
Not in a motif group
homologous
HL_3KFU_006
NA
HL_4V6Q_0391/BA/34:48No text annotation
Not in a motif group
HL_4V6Q_0401/BA/85:91No text annotation
Not in a motif group
HL_4V6Q_0411/BB/59:68No text annotation
Not in a motif group
homologous
HL_7A0S_001
HL_99167.1
HL_4V6Q_0421/BB/86:96No text annotation
Not in a motif group
HL_4V6Q_0431/BB/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_4V6Q_0441/BB/137:142No text annotation
Not in a motif group
geometric
HL_6CK5_001
HL_03562.2
HL_4V6Q_0451/BB/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_4V6Q_0461/BB/194:201No text annotation
Not in a motif group
homologous
HL_7RQB_006
HL_06192.2
HL_4V6Q_0471/BB/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_4V6Q_0481/BB/246:252No text annotation
Not in a motif group
homologous
HL_4WF9_008
HL_67216.7
HL_4V6Q_0491/BB/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_4V6Q_0501/BB/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_4V6Q_0511/BB/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_4V6Q_0521/BB/381:393No text annotation
Not in a motif group
HL_4V6Q_0531/BB/409:418No text annotation
Not in a motif group
geometric
HL_4V83_139
HL_53597.2
HL_4V6Q_0541/BB/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_4V6Q_0551/BB/487:493GNRA
Not in a motif group
homologous
HL_4WF9_016
HL_42097.1
HL_4V6Q_0561/BB/543:550No text annotation
Not in a motif group
HL_4V6Q_0571/BB/566:575No text annotation
Not in a motif group
HL_4V6Q_0581/BB/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_4V6Q_0591/BB/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_4V6Q_0601/BB/640:648No text annotation
Not in a motif group
HL_4V6Q_0611/BB/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4V6Q_0621/BB/744:753No text annotation
Not in a motif group
homologous
HL_5J7L_155
NA
HL_4V6Q_0631/BB/779:785Other HL
Not in a motif group
geometric
HL_1P6V_001
HL_03562.2
HL_4V6Q_0641/BB/825:832No text annotation
Not in a motif group
geometric
HL_5TBW_012
HL_86373.2
HL_4V6Q_0651/BB/885:891No text annotation
Not in a motif group
HL_4V6Q_0661/BB/954:963No text annotation
Not in a motif group
homologous
HL_5J7L_159
NA
HL_4V6Q_0671/BB/978:985No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_4V6Q_0681/BB/1064:1074No text annotation
Not in a motif group
HL_4V6Q_0691/BB/1092:1099No text annotation
Not in a motif group
homologous
HL_6PRV_002
HL_84085.2
HL_4V6Q_0701/BB/1172:1177No text annotation
Not in a motif group
HL_4V6Q_0711/BB/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_4V6Q_0721/BB/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_4V6Q_0731/BB/1324:1330No text annotation
Not in a motif group
homologous
HL_7A0S_033
HL_46680.1
HL_4V6Q_0741/BB/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_4V6Q_0751/BB/1389:1398No text annotation
Not in a motif group
homologous
HL_7A0S_035
HL_70682.1
HL_4V6Q_0761/BB/1450:1461No text annotation
Not in a motif group
HL_4V6Q_0771/BB/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_4V6Q_0781/BB/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_4V6Q_0791/BB/1565:1568No text annotation
Not in a motif group
HL_4V6Q_0801/BB/1612:1619No text annotation
Not in a motif group
HL_4V6Q_0811/BB/1629:1637No text annotation
Not in a motif group
homologous
HL_4WF9_039
HL_92229.2
HL_4V6Q_0821/BB/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_4V6Q_0831/BB/1728:1731No text annotation
Not in a motif group
HL_4V6Q_0841/BB/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_76539.2
HL_4V6Q_0851/BB/1777:1787No text annotation
Not in a motif group
HL_4V6Q_0861/BB/1806:1811No text annotation
Not in a motif group
homologous
HL_4WF9_044
NA
HL_4V6Q_0871/BB/1868:1873GNRA
Not in a motif group
geometric
HL_6CZR_090
HL_87030.2
HL_4V6Q_0881/BB/1910:1920No text annotation
Not in a motif group
homologous
HL_5J7L_181
NA
HL_4V6Q_0891/BB/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_4V6Q_0901/BB/2027:2036No text annotation
Not in a motif group
HL_4V6Q_0911/BB/2142:2149No text annotation
Not in a motif group
geometric
HL_5TBW_012
HL_86373.2
HL_4V6Q_0921/BB/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_4V6Q_0931/BB/2246:2258No text annotation
Not in a motif group
HL_4V6Q_0941/BB/2264:2276No text annotation
Not in a motif group
homologous
HL_4WF9_050
HL_19870.6
HL_4V6Q_0951/BB/2302:2314No text annotation
Not in a motif group
HL_4V6Q_0961/BB/2324:2331No text annotation
Not in a motif group
homologous
HL_7A0S_055
HL_12078.2
HL_4V6Q_0971/BB/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_4V6Q_0981/BB/2374:2379GNRA
Not in a motif group
homologous
HL_4WF9_054
HL_42097.1
HL_4V6Q_0991/BB/2404:2413No text annotation
Not in a motif group
HL_4V6Q_1001/BB/2471:2479Other HL
Not in a motif group
geometric
HL_1P6V_001
HL_03562.2
HL_4V6Q_1011/BB/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_4V6Q_1021/BB/2551:2557No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_4V6Q_1031/BB/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_4V6Q_1041/BB/2658:2663GNRA
Not in a motif group
geometric
HL_3SUX_002
HL_42097.1
HL_4V6Q_1051/BB/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_7A0S_064
HL_46680.1
HL_4V6Q_1061/BB/2745:2759No text annotation
Not in a motif group
homologous
HL_7A0S_065
HL_56677.7
HL_4V6Q_1071/BB/2796:2800No text annotation
Not in a motif group
geometric
HL_7RQB_009
HL_89098.1
HL_4V6Q_1081/BB/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_4V6Q_1091/BB/2856:2861Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_42097.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V6Q_0011/AA/28:33,
1/AA/551:555
No text annotation
Not in a motif group
IL_4V6Q_0021/AA/43:45,
1/AA/396:399
No text annotation
Not in a motif group
geometric
IL_1XJR_003
IL_10023.1
IL_4V6Q_0031/AA/47:52,
1/AA/359:361
No text annotation
Not in a motif group
IL_4V6Q_0041/AA/54:56,
1/AA/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_4V6Q_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_4V6Q_0061/AA/67:69,
1/AA/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_4V6Q_0071/AA/70:73,
1/AA/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_4V6Q_0081/AA/75:77,
1/AA/92:95
Single bulged G, near cWW
Not in a motif group
homologous
IL_5J7L_008
IL_82068.2
IL_4V6Q_0091/AA/128:131,
1/AA/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_4V6Q_0101/AA/132:136,
1/AA/227:230
No text annotation
Not in a motif group
IL_4V6Q_0111/AA/137:139,
1/AA/224:226
No text annotation
Not in a motif group
geometric
IL_1NBS_006
IL_95997.1
IL_4V6Q_0121/AA/144:146,
1/AA/176:178
Isolated cWH basepair
Not in a motif group
geometric
IL_6IA2_003
IL_51629.2
IL_4V6Q_0131/AA/146:153,
1/AA/168:176
No text annotation
Not in a motif group
IL_4V6Q_0141/AA/203:207,
1/AA/212:214
No text annotation
Not in a motif group
IL_4V6Q_0151/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_4V6Q_0161/AA/248:253,
1/AA/273:276
No text annotation
Not in a motif group
IL_4V6Q_0171/AA/292:293,
1/AA/304:308
No text annotation
Not in a motif group
IL_4V6Q_0181/AA/367:369,
1/AA/392:393
Single bulged U
Not in a motif group
geometric
IL_4V88_407
IL_83039.13
IL_4V6Q_0191/AA/371:376,
1/AA/387:390
C-loop with extra cWW pair
Not in a motif group
geometric
IL_4V88_408
IL_93630.2
IL_4V6Q_0201/AA/408:416,
1/AA/427:434
No text annotation
Not in a motif group
IL_4V6Q_0211/AA/440:442,
1/AA/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_4V6Q_0221/AA/446:450,
1/AA/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_4V6Q_0231/AA/450:455,
1/AA/477:483
No text annotation
Not in a motif group
IL_4V6Q_0241/AA/456:460,
1/AA/471:476
No text annotation
Not in a motif group
IL_4V6Q_0251/AA/460:462,
1/AA/470:471
Single stack bend
Not in a motif group
geometric
IL_7KGA_006
IL_76488.2
IL_4V6Q_0261/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_4V6Q_0271/AA/515:521,
1/AA/528:536
No text annotation
Not in a motif group
homologous
IL_4LFB_021
NA
IL_4V6Q_0281/AA/569:575,
1/AA/880:881
No text annotation
Not in a motif group
homologous
IL_5J7L_026
IL_69996.1
IL_4V6Q_0291/AA/580:584,
1/AA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_4V6Q_0301/AA/594:596,
1/AA/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_4V6Q_0311/AA/597:598,
1/AA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_4V6Q_0321/AA/605:612,
1/AA/628:633
No text annotation
Not in a motif group
IL_4V6Q_0331/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_50694.2
IL_4V6Q_0341/AA/659:660,
1/AA/745:747
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_4V6Q_0351/AA/662:666,
1/AA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_4V6Q_0361/AA/673:678,
1/AA/712:717
No text annotation
Not in a motif group
homologous
IL_6CZR_142
IL_04668.1
IL_4V6Q_0371/AA/684:688,
1/AA/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_4V6Q_0381/AA/774:778,
1/AA/804:805
Left turn
Not in a motif group
geometric
IL_5J7L_036
IL_29346.1
IL_4V6Q_0391/AA/778:783,
1/AA/799:804
No text annotation
Not in a motif group
IL_4V6Q_0401/AA/833:835,
1/AA/851:853
No text annotation
Not in a motif group
geometric
IL_2ZNI_001
IL_51629.2
IL_4V6Q_0411/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4V6Q_0421/AA/925:927,
1/AA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.2
IL_4V6Q_0431/AA/933:935,
1/AA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_4V6Q_0441/AA/953:955,
1/AA/1225:1228
No text annotation
Not in a motif group
geometric
IL_7A0S_092
IL_82842.2
IL_4V6Q_0451/AA/993:997,
1/AA/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_5J7L_043
IL_47078.1
IL_4V6Q_0461/AA/998:999,
1/AA/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_4V6Q_0471/AA/1048:1056,
1/AA/1204:1209
No text annotation
Not in a motif group
IL_4V6Q_0481/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_4V6Q_0491/AA/1060:1061,
1/AA/1195:1197
No text annotation
Not in a motif group
IL_4V6Q_0501/AA/1061:1063,
1/AA/1193:1195
No text annotation
Not in a motif group
homologous
IL_6CZR_157
IL_95997.1
IL_4V6Q_0511/AA/1124:1128,
1/AA/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_4V6Q_0521/AA/1129:1132,
1/AA/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_4V6Q_0531/AA/1158:1161,
1/AA/1175:1181
No text annotation
Not in a motif group
homologous
IL_5J7L_053
IL_42032.1
IL_4V6Q_0541/AA/1247:1253,
1/AA/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_4V6Q_0551/AA/1255:1258,
1/AA/1277:1282
No text annotation
Not in a motif group
IL_4V6Q_0561/AA/1259:1263,
1/AA/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_4V6Q_0571/AA/1303:1308,
1/AA/1329:1334
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_4V6Q_0581/AA/1399:1401,
1/AA/1501:1504
No text annotation
Not in a motif group
geometric
IL_5J7L_058
IL_36143.3
IL_4V6Q_0591/AA/1401:1404,
1/AA/1497:1501
No text annotation
Not in a motif group
homologous
IL_5J7L_059
NA
IL_4V6Q_0601/AA/1405:1409,
1/AA/1491:1496
No text annotation
Not in a motif group
homologous
IL_5J7L_060
NA
IL_4V6Q_0611/AA/1412:1416,
1/AA/1484:1488
No text annotation
Not in a motif group
geometric
IL_5TBW_121
IL_05145.2
IL_4V6Q_0621/AA/1416:1421,
1/AA/1479:1484
No text annotation
Not in a motif group
IL_4V6Q_0631/AA/1430:1435,
1/AA/1466:1470
No text annotation
Not in a motif group
IL_4V6Q_0641/AA/1438:1443,
1/AA/1459:1463
No text annotation
Not in a motif group
IL_4V6Q_0651/AA/1445:1448,
1/AA/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5
IL_4V6Q_0661/BA/17:18,
1/BA/65:67
Major groove intercalation
Not in a motif group
homologous
IL_7RQB_111
IL_37497.2
IL_4V6Q_0671/BA/23:28,
1/BA/56:60
No text annotation
Not in a motif group
IL_4V6Q_0681/BA/30:31,
1/BA/51:54
Minor groove platform
Not in a motif group
geometric
IL_3MXH_005
IL_15052.1
IL_4V6Q_0691/BA/71:79,
1/BA/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3
IL_4V6Q_0701/BB/24:30,
1/BB/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_7RQB_001
IL_66414.6
IL_4V6Q_0711/BB/36:37,
1/BB/442:444
Single bulged A
Not in a motif group
homologous
IL_7A0S_002
IL_37497.2
IL_4V6Q_0721/BB/43:44,
1/BB/434:436
Minor groove platform
Not in a motif group
homologous
IL_7RQB_003
IL_42622.2
IL_4V6Q_0731/BB/80:85,
1/BB/97:106
No text annotation
Not in a motif group
IL_4V6Q_0741/BB/188:194,
1/BB/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7RQB_006
IL_04346.7
IL_4V6Q_0751/BB/239:245,
1/BB/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_4V6Q_0761/BB/269:271,
1/BB/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_4V6Q_0771/BB/274:281,
1/BB/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_4V6Q_0781/BB/292:295,
1/BB/343:348
No text annotation
Not in a motif group
IL_4V6Q_0791/BB/481:484,
1/BB/496:509
No text annotation
Not in a motif group
geometric
IL_5J7L_255
IL_60992.6
IL_4V6Q_0801/BB/536:539,
1/BB/554:557
Double sheared
Not in a motif group
homologous
IL_4WF9_016
IL_09705.9
IL_4V6Q_0811/BB/564:566,
1/BB/575:577
No text annotation
Not in a motif group
homologous
IL_7RQB_015
IL_95997.1
IL_4V6Q_0821/BB/606:610,
1/BB/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_4V6Q_0831/BB/671:674,
1/BB/806:809
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4K27_001
IL_30621.2
IL_4V6Q_0841/BB/674:678,
1/BB/799:806
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_5J7L_260
IL_17470.6
IL_4V6Q_0851/BB/694:696,
1/BB/766:768
No text annotation
Not in a motif group
IL_4V6Q_0861/BB/697:698,
1/BB/763:765
Single bulged A
Not in a motif group
homologous
IL_5J7L_261
IL_37497.2
IL_4V6Q_0871/BB/702:707,
1/BB/724:730
Quadruple sheared
Not in a motif group
geometric
IL_3FTF_001
IL_06136.1
IL_4V6Q_0881/BB/738:740,
1/BB/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.1
IL_4V6Q_0891/BB/775:777,
1/BB/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_023
IL_90991.6
IL_4V6Q_0901/BB/843:845,
1/BB/934:935
Single stack bend
Not in a motif group
geometric
IL_5J7L_249
IL_76488.2
IL_4V6Q_0911/BB/845:848,
1/BB/930:934
No text annotation
Not in a motif group
IL_4V6Q_0921/BB/849:851,
1/BB/926:929
No text annotation
Not in a motif group
geometric
IL_4P3T_002
IL_46796.1
IL_4V6Q_0931/BB/856:862,
1/BB/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_5J7L_270
IL_93830.3
IL_4V6Q_0941/BB/862:863,
1/BB/913:915
Minor groove platform
Not in a motif group
geometric
IL_4WF9_032
IL_42622.2
IL_4V6Q_0951/BB/864:868,
1/BB/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_4V6Q_0961/BB/870:872,
1/BB/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_4V6Q_0971/BB/875:879,
1/BB/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_4V6Q_0981/BB/880:881,
1/BB/895:897
No text annotation
Not in a motif group
IL_4V6Q_0991/BB/881:884,
1/BB/892:895
No text annotation
Not in a motif group
IL_4V6Q_1001/BB/994:996,
1/BB/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7A0S_032
IL_61258.12
IL_4V6Q_1011/BB/998:1002,
1/BB/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_5J7L_277
IL_89002.2
IL_4V6Q_1021/BB/1004:1011,
1/BB/1150:1151
Multiple bulged bases
Not in a motif group
geometric
IL_7V9E_001
IL_59677.2
IL_4V6Q_1031/BB/1011:1013,
1/BB/1149:1150
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.13
IL_4V6Q_1041/BB/1018:1024,
1/BB/1140:1144
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_4V6Q_1051/BB/1024:1030,
1/BB/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_4V6Q_1061/BB/1031:1034,
1/BB/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_4WF9_041
IL_82068.2
IL_4V6Q_1071/BB/1038:1041,
1/BB/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_4V6Q_1081/BB/1043:1051,
1/BB/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_4V6Q_1091/BB/1059:1062,
1/BB/1076:1079
No text annotation
Not in a motif group
homologous
IL_6PRV_001
IL_23544.2
IL_4V6Q_1101/BB/1087:1090,
1/BB/1101:1102
Major groove platform
Not in a motif group
geometric
IL_3OXE_003
IL_27635.1
IL_4V6Q_1111/BB/1196:1199,
1/BB/1246:1250
No text annotation
Not in a motif group
IL_4V6Q_1121/BB/1202:1207,
1/BB/1239:1243
No text annotation
Not in a motif group
IL_4V6Q_1131/BB/1208:1215,
1/BB/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_4V6Q_1141/BB/1262:1269,
1/BB/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_4V6Q_1151/BB/1310:1313,
1/BB/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4WF9_049
IL_50694.2
IL_4V6Q_1161/BB/1319:1324,
1/BB/1330:1333
No text annotation
Not in a motif group
IL_4V6Q_1171/BB/1351:1355,
1/BB/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_4V6Q_1181/BB/1357:1361,
1/BB/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_4V6Q_1191/BB/1414:1416,
1/BB/1582:1588
No text annotation
Not in a motif group
IL_4V6Q_1201/BB/1417:1421,
1/BB/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_4V6Q_1211/BB/1431:1435,
1/BB/1557:1562
No text annotation
Not in a motif group
IL_4V6Q_1221/BB/1437:1440,
1/BB/1551:1555
No text annotation
Not in a motif group
IL_4V6Q_1231/BB/1468:1471,
1/BB/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_4V6Q_1241/BB/1473:1478,
1/BB/1513:1518
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7A0S_027
IL_81631.1
IL_4V6Q_1251/BB/1481:1484,
1/BB/1505:1510
No text annotation
Not in a motif group
IL_4V6Q_1261/BB/1489:1491,
1/BB/1499:1500
Single bulged A
Not in a motif group
geometric
IL_4V9F_032
IL_37497.2
IL_4V6Q_1271/BB/1526:1529,
1/BB/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_4V6Q_1281/BB/1651:1656,
1/BB/2004:2006
No text annotation
Not in a motif group
homologous
IL_4WF9_062
IL_12566.2
IL_4V6Q_1291/BB/1663:1665,
1/BB/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_4V6Q_1301/BB/1666:1669,
1/BB/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_50694.2
IL_4V6Q_1311/BB/1669:1674,
1/BB/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_7RQB_067
IL_82842.2
IL_4V6Q_1321/BB/1686:1691,
1/BB/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_7A0S_063
IL_65969.2
IL_4V6Q_1331/BB/1712:1718,
1/BB/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_4V6Q_1341/BB/1720:1726,
1/BB/1734:1740
No text annotation
Not in a motif group
IL_4V6Q_1351/BB/1727:1728,
1/BB/1731:1733
Single bulged C
Not in a motif group
geometric
IL_5J7L_311
IL_61258.12
IL_4V6Q_1361/BB/1770:1771,
1/BB/1980:1982
Single bulged A
Not in a motif group
homologous
IL_4WF9_068
IL_37497.2
IL_4V6Q_1371/BB/1798:1804,
1/BB/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_4V6Q_1381/BB/1837:1840,
1/BB/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_4V6Q_1391/BB/1840:1842,
1/BB/1898:1902
No text annotation
Not in a motif group
IL_4V6Q_1401/BB/1846:1851,
1/BB/1891:1894
No text annotation
Not in a motif group
IL_4V6Q_1411/BB/1851:1860,
1/BB/1882:1891
No text annotation
Not in a motif group
IL_4V6Q_1421/BB/1861:1863,
1/BB/1879:1881
Isolated cWS basepair
Not in a motif group
geometric
IL_5TBW_047
IL_52767.2
IL_4V6Q_1431/BB/1864:1867,
1/BB/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_4V6Q_1441/BB/1933:1934,
1/BB/1964:1967
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_1U9S_003
IL_69996.1
IL_4V6Q_1451/BB/1934:1945,
1/BB/1961:1964
No text annotation
Not in a motif group
homologous
IL_7A0S_072
IL_81589.2
IL_4V6Q_1461/BB/2050:2052,
1/BB/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.1
IL_4V6Q_1471/BB/2053:2056,
1/BB/2612:2616
No text annotation
Not in a motif group
IL_4V6Q_1481/BB/2064:2066,
1/BB/2444:2446
No text annotation
Not in a motif group
homologous
IL_5J7L_322
NA
IL_4V6Q_1491/BB/2067:2071,
1/BB/2438:2443
No text annotation
Not in a motif group
IL_4V6Q_1501/BB/2081:2083,
1/BB/2236:2239
No text annotation
Not in a motif group
IL_4V6Q_1511/BB/2084:2087,
1/BB/2232:2235
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_041
IL_30621.2
IL_4V6Q_1521/BB/2103:2105,
1/BB/2184:2186
Isolated near basepair
Not in a motif group
geometric
IL_4V88_406
IL_52767.2
IL_4V6Q_1531/BB/2106:2110,
1/BB/2179:2183
No text annotation
Not in a motif group
IL_4V6Q_1541/BB/2202:2204,
1/BB/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_4V6Q_1551/BB/2350:2353,
1/BB/2364:2367
Double sheared
Not in a motif group
homologous
IL_4WF9_087
IL_09705.9
IL_4V6Q_1561/BB/2401:2403,
1/BB/2414:2415
Single bulged U
Not in a motif group
geometric
IL_6UFH_004
IL_83039.13
IL_4V6Q_1571/BB/2456:2459,
1/BB/2493:2495
No text annotation
Not in a motif group
IL_4V6Q_1581/BB/2459:2461,
1/BB/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_337
IL_92788.2
IL_4V6Q_1591/BB/2466:2470,
1/BB/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_4V6Q_1601/BB/2507:2509,
1/BB/2579:2582
No text annotation
Not in a motif group
homologous
IL_5J7L_339
NA
IL_4V6Q_1611/BB/2510:2512,
1/BB/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_097
IL_90933.2
IL_4V6Q_1621/BB/2512:2513,
1/BB/2571:2574
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_4V6Q_1631/BB/2521:2523,
1/BB/2540:2544
No text annotation
Not in a motif group
IL_4V6Q_1641/BB/2588:2590,
1/BB/2604:2606
No text annotation
Not in a motif group
homologous
IL_7RQB_100
NA
IL_4V6Q_1651/BB/2591:2592,
1/BB/2601:2603
Single bulged A
Not in a motif group
geometric
IL_7RQB_048
IL_37497.2
IL_4V6Q_1661/BB/2636:2640,
1/BB/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_4V6Q_1671/BB/2652:2658,
1/BB/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7A0S_094
IL_16458.1
IL_4V6Q_1681/BB/2680:2684,
1/BB/2725:2727
C-loop
Not in a motif group
homologous
IL_7A0S_095
IL_63596.6
IL_4V6Q_1691/BB/2687:2691,
1/BB/2718:2722
No text annotation
Not in a motif group
homologous
IL_4WF9_102
IL_08296.3
IL_4V6Q_1701/BB/2695:2696,
1/BB/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_106
IL_71530.2
IL_4V6Q_1711/BB/2737:2742,
1/BB/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_4V6Q_1721/BB/2806:2811,
1/BB/2889:2892
No text annotation
Not in a motif group
IL_4V6Q_1731/BB/2815:2818,
1/BB/2828:2831
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1JID_002
IL_30621.2
IL_4V6Q_1741/BB/2838:2839,
1/BB/2878:2880
Single bulged C
Not in a motif group
homologous
IL_7RQB_108
IL_61258.12
IL_4V6Q_1751/BB/2843:2846,
1/BB/2870:2874
No text annotation
Not in a motif group
homologous
IL_7RQB_109
IL_58764.3
IL_4V6Q_1761/BB/2847:2852,
1/BB/2865:2869
No text annotation
Not in a motif group
homologous
IL_7A0S_101
IL_83162.5

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V6Q_0011/AA/45:47,
1/AA/361:367,
1/AA/393:396
No text annotation
Not in a motif group
J3_4V6Q_0021/AA/586:588,
1/AA/651:654,
1/AA/754:755
No text annotation
Not in a motif group
J3_4V6Q_0031/AA/672:673,
1/AA/717:725,
1/AA/732:734
No text annotation
Not in a motif group
J3_4V6Q_0041/AA/826:829,
1/AA/857:861,
1/AA/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_4V6Q_0051/AA/941:946,
1/AA/1235:1237,
1/AA/1337:1342
No text annotation
Not in a motif group
J3_4V6Q_0061/AA/955:962,
1/AA/973:984,
1/AA/1221:1225
No text annotation
Not in a motif group
J3_4V6Q_0071/AA/990:993,
1/AA/1045:1047,
1/AA/1210:1215
No text annotation
Not in a motif group
J3_4V6Q_0081/AA/1003:1006,
1/AA/1023:1027,
1/AA/1034:1037
No text annotation
Not in a motif group
J3_4V6Q_0091/AA/1063:1068,
1/AA/1107:1114,
1/AA/1186:1193
No text annotation
Not in a motif group
J3_4V6Q_0101/AA/1073:1074,
1/AA/1083:1087,
1/AA/1098:1102
No text annotation
Not in a motif group
J3_4V6Q_0111/AA/1116:1120,
1/AA/1153:1158,
1/AA/1181:1184
No text annotation
Not in a motif group
J3_4V6Q_0121/AA/1237:1242,
1/AA/1295:1303,
1/AA/1334:1337
No text annotation
Not in a motif group
J3_4V6Q_0131/BA/10:16,
1/BA/68:70,
1/BA/106:110
No text annotation
Not in a motif group
J3_4V6Q_0141/BB/30:31,
1/BB/474:481,
1/BB/509:510
No text annotation
Not in a motif group
homologous
J3_7A0S_001
NA
J3_4V6Q_0151/BB/55:57,
1/BB/70:76,
1/BB/110:115
No text annotation
Not in a motif group
J3_4V6Q_0161/BB/683:689,
1/BB/773:775,
1/BB/791:794
No text annotation
Not in a motif group
J3_4V6Q_0171/BB/698:700,
1/BB/732:736,
1/BB/760:763
No text annotation
Not in a motif group
J3_4V6Q_0181/BB/1055:1058,
1/BB/1080:1087,
1/BB/1102:1104
No text annotation
Not in a motif group
J3_4V6Q_0191/BB/1298:1303,
1/BB/1625:1627,
1/BB/1639:1642
No text annotation
Not in a motif group
J3_4V6Q_0201/BB/1306:1309,
1/BB/1605:1611,
1/BB/1620:1622
No text annotation
Not in a motif group
homologous
J3_7A0S_007
NA
J3_4V6Q_0211/BB/1344:1350,
1/BB/1381:1385,
1/BB/1402:1403
No text annotation
Not in a motif group
J3_4V6Q_0221/BB/2091:2093,
1/BB/2196:2200,
1/BB/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_4V6Q_0231/BB/2295:2299,
1/BB/2317:2323,
1/BB/2332:2337
No text annotation
Not in a motif group
J3_4V6Q_0241/BB/2517:2521,
1/BB/2544:2547,
1/BB/2561:2567
No text annotation
Not in a motif group
J3_4V6Q_0251/BB/2789:2791,
1/BB/2805:2806,
1/BB/2892:2894
No text annotation
Not in a motif group
homologous
J3_5J7L_047
NA
J3_4V6Q_0261/BB/2812:2815,
1/BB/2831:2836,
1/BB/2882:2888
No text annotation
Not in a motif group
homologous
J3_5J7L_048
NA

Problematic loops

No problematic loops


Coloring options:
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