4D67 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4D67_001 | No text annotation | ||
| HL_4D67_002 | No text annotation | ||
| HL_4D67_003 | No text annotation | ||
| HL_4D67_004 | No text annotation | ||
| HL_4D67_005 | No text annotation | ||
| HL_4D67_078 | T-loop with 1 bulged base | ||
| HL_4D67_006 | No text annotation | ||
| HL_4D67_007 | T-loop with unstacked turn | ||
| HL_4D67_008 | No text annotation | ||
| HL_4D67_079 | T-loop related | ||
| HL_4D67_009 | Pseudoknot geometry | ||
| HL_4D67_010 | GNRA | ||
| HL_4D67_011 | No text annotation | ||
| HL_4D67_012 | No text annotation | ||
| HL_4D67_080 | No text annotation | ||
| HL_4D67_013 | No text annotation | ||
| HL_4D67_014 | T-loop with 2 stacked bulged bases | ||
| HL_4D67_015 | No text annotation | ||
| HL_4D67_081 | No text annotation | ||
| HL_4D67_016 | GNRA | ||
| HL_4D67_017 | No text annotation | ||
| HL_4D67_018 | No text annotation | ||
| HL_4D67_019 | No text annotation | ||
| HL_4D67_085 | No text annotation | ||
| HL_4D67_020 | No text annotation | ||
| HL_4D67_021 | No text annotation | ||
| HL_4D67_022 | No text annotation | ||
| HL_4D67_023 | Externally structured | ||
| HL_4D67_024 | No text annotation | ||
| HL_4D67_025 | No text annotation | ||
| HL_4D67_026 | GNRA | ||
| HL_4D67_027 | No text annotation | ||
| HL_4D67_028 | No text annotation | ||
| HL_4D67_029 | No text annotation | ||
| HL_4D67_030 | GNRA | ||
| HL_4D67_031 | T-loop with 2 stacked bulged bases | ||
| HL_4D67_032 | No text annotation | ||
| HL_4D67_086 | Pseudoknot geometry with 3' bulge | ||
| HL_4D67_033 | GNRA variation | ||
| HL_4D67_034 | No text annotation | ||
| HL_4D67_087 | Mini UNCG | ||
| HL_4D67_035 | No text annotation | ||
| HL_4D67_036 | No text annotation | ||
| HL_4D67_037 | GNRA | ||
| HL_4D67_038 | No text annotation | ||
| HL_4D67_039 | No text annotation | ||
| HL_4D67_040 | No text annotation | ||
| HL_4D67_041 | No text annotation | ||
| HL_4D67_042 | No text annotation | ||
| HL_4D67_043 | GNRA | ||
| HL_4D67_044 | UNCG | ||
| HL_4D67_045 | No text annotation | ||
| HL_4D67_046 | No text annotation | ||
| HL_4D67_047 | No text annotation | ||
| HL_4D67_048 | GNRA | ||
| HL_4D67_049 | GNRA | ||
| HL_4D67_050 | No text annotation | ||
| HL_4D67_051 | No text annotation | ||
| HL_4D67_052 | No text annotation | ||
| HL_4D67_053 | No text annotation | ||
| HL_4D67_088 | No text annotation | ||
| HL_4D67_054 | No text annotation | ||
| HL_4D67_055 | No text annotation | ||
| HL_4D67_056 | No text annotation | ||
| HL_4D67_057 | No text annotation | ||
| HL_4D67_058 | Pseudoknot geometry | ||
| HL_4D67_059 | No text annotation | ||
| HL_4D67_060 | GNRA with extra cWW | ||
| HL_4D67_082 | GNRA | ||
| HL_4D67_061 | No text annotation | ||
| HL_4D67_062 | No text annotation | ||
| HL_4D67_063 | No text annotation | ||
| HL_4D67_089 | GNRA variation | ||
| HL_4D67_064 | No text annotation | ||
| HL_4D67_065 | GNRA | ||
| HL_4D67_066 | GNRA | ||
| HL_4D67_067 | Ribsomal LSU H95 | ||
| HL_4D67_068 | No text annotation | ||
| HL_4D67_083 | No text annotation | ||
| HL_4D67_069 | No text annotation | ||
| HL_4D67_070 | No text annotation | ||
| HL_4D67_071 | No text annotation | ||
| HL_4D67_090 | No text annotation | ||
| HL_4D67_072 | Pseudoknot with intercalation | ||
| HL_4D67_073 | No text annotation | ||
| HL_4D67_084 | No text annotation | ||
| HL_4D67_074 | No text annotation | ||
| HL_4D67_075 | No text annotation | ||
| HL_4D67_076 | No text annotation | ||
| HL_4D67_077 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4D67_001 | No text annotation | ||
| IL_4D67_159 | No text annotation | ||
| IL_4D67_208 | No text annotation | ||
| IL_4D67_002 | Other IL | ||
| IL_4D67_003 | Tandem non-canonical cWW pairs | ||
| IL_4D67_004 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4D67_160 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4D67_005 | No text annotation | ||
| IL_4D67_161 | No text annotation | ||
| IL_4D67_209 | No text annotation | ||
| IL_4D67_006 | Minor groove platform | ||
| IL_4D67_007 | Isolated non-canonical cWW pair | ||
| IL_4D67_210 | No text annotation | ||
| IL_4D67_162 | Isolated non-canonical cWW pair | ||
| IL_4D67_008 | Single bulged A | ||
| IL_4D67_009 | No text annotation | ||
| IL_4D67_163 | No text annotation | ||
| IL_4D67_010 | Single stack bend | ||
| IL_4D67_011 | Triple sheared with non-canonical cWW | ||
| IL_4D67_012 | No text annotation | ||
| IL_4D67_013 | Isolated non-canonical cWW pair | ||
| IL_4D67_014 | No text annotation | ||
| IL_4D67_211 | No text annotation | ||
| IL_4D67_164 | No text annotation | ||
| IL_4D67_165 | Isolated non-canonical cWW pair | ||
| IL_4D67_212 | No text annotation | ||
| IL_4D67_015 | No text annotation | ||
| IL_4D67_016 | No text annotation | ||
| IL_4D67_213 | No text annotation | ||
| IL_4D67_017 | No text annotation | ||
| IL_4D67_018 | Isolated non-canonical cWW pair | ||
| IL_4D67_019 | Isolated non-canonical cWW pair | ||
| IL_4D67_020 | No text annotation | ||
| IL_4D67_166 | No text annotation | ||
| IL_4D67_214 | No text annotation | ||
| IL_4D67_167 | No text annotation | ||
| IL_4D67_021 | No text annotation | ||
| IL_4D67_022 | Tandem non-canonical cWW pairs | ||
| IL_4D67_023 | No text annotation | ||
| IL_4D67_024 | Isolated non-canonical cWW pair | ||
| IL_4D67_168 | No text annotation | ||
| IL_4D67_025 | No text annotation | ||
| IL_4D67_026 | Tandem non-canonical cWW pairs | ||
| IL_4D67_169 | Multiple bulged bases | ||
| IL_4D67_027 | Multiple bulged bases | ||
| IL_4D67_028 | No text annotation | ||
| IL_4D67_029 | No text annotation | ||
| IL_4D67_170 | Isolated non-canonical cWW pair | ||
| IL_4D67_030 | Multiple bulged bases | ||
| IL_4D67_031 | No text annotation | ||
| IL_4D67_171 | Isolated non-canonical cWW pair | ||
| IL_4D67_032 | No text annotation | ||
| IL_4D67_172 | No text annotation | ||
| IL_4D67_033 | Tandem non-canonical cWW pairs | ||
| IL_4D67_034 | Isolated non-canonical cWW pair | ||
| IL_4D67_035 | No text annotation | ||
| IL_4D67_036 | No text annotation | ||
| IL_4D67_215 | No text annotation | ||
| IL_4D67_173 | Tandem non-canonical cWW pairs | ||
| IL_4D67_037 | No text annotation | ||
| IL_4D67_038 | Tandem non-canonical cWW pairs | ||
| IL_4D67_039 | Single bulged A | ||
| IL_4D67_174 | No text annotation | ||
| IL_4D67_040 | Minor groove platform | ||
| IL_4D67_041 | Isolated non-canonical cWW pair | ||
| IL_4D67_175 | No text annotation | ||
| IL_4D67_042 | tHW-tHW cross-strand stack | ||
| IL_4D67_176 | Triple sheared with non-canonical cWW | ||
| IL_4D67_043 | No text annotation | ||
| IL_4D67_044 | Major groove platform with extra cWW | ||
| IL_4D67_045 | Single bulged U | ||
| IL_4D67_046 | No text annotation | ||
| IL_4D67_047 | Isolated non-canonical cWW pair | ||
| IL_4D67_048 | No text annotation | ||
| IL_4D67_049 | Multiple bulged bases | ||
| IL_4D67_050 | Single bulged G | ||
| IL_4D67_051 | No text annotation | ||
| IL_4D67_177 | No text annotation | ||
| IL_4D67_052 | Minor groove platform | ||
| IL_4D67_216 | C-loop with bulged stacked A's | ||
| IL_4D67_053 | No text annotation | ||
| IL_4D67_054 | Tandem non-canonical cWW pairs | ||
| IL_4D67_178 | Isolated non-canonical cWW pair | ||
| IL_4D67_055 | Tandem non-canonical cWW pairs | ||
| IL_4D67_056 | No text annotation | ||
| IL_4D67_179 | No text annotation | ||
| IL_4D67_057 | No text annotation | ||
| IL_4D67_058 | Single bulged A | ||
| IL_4D67_059 | Tandem non-canonical cWW pairs | ||
| IL_4D67_180 | Isolated non-canonical cWW pair | ||
| IL_4D67_060 | UAA/GAN | ||
| IL_4D67_061 | Isolated non-canonical cWW pair | ||
| IL_4D67_062 | Multiple bulged bases | ||
| IL_4D67_181 | Partly complementary | ||
| IL_4D67_063 | No text annotation | ||
| IL_4D67_064 | No text annotation | ||
| IL_4D67_065 | Single bulged U | ||
| IL_4D67_066 | Tandem non-canonical cWW pairs | ||
| IL_4D67_067 | Isolated cWS basepair | ||
| IL_4D67_068 | Isolated non-canonical cWW pair | ||
| IL_4D67_182 | Single bulged A | ||
| IL_4D67_069 | No text annotation | ||
| IL_4D67_217 | No text annotation | ||
| IL_4D67_183 | No text annotation | ||
| IL_4D67_070 | Single bulged A | ||
| IL_4D67_071 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_4D67_072 | Major groove platform; stack outside cWW | ||
| IL_4D67_184 | No text annotation | ||
| IL_4D67_073 | C-loop | ||
| IL_4D67_074 | UAA/GAN | ||
| IL_4D67_075 | No text annotation | ||
| IL_4D67_185 | Partly complementary | ||
| IL_4D67_076 | Isolated cWH basepair | ||
| IL_4D67_077 | Isolated non-canonical cWW pair | ||
| IL_4D67_078 | Triple sheared | ||
| IL_4D67_079 | Single bulged A | ||
| IL_4D67_080 | Single stack bend | ||
| IL_4D67_081 | No text annotation | ||
| IL_4D67_186 | No text annotation | ||
| IL_4D67_082 | Minor groove platform | ||
| IL_4D67_187 | No text annotation | ||
| IL_4D67_218 | No text annotation | ||
| IL_4D67_083 | No text annotation | ||
| IL_4D67_084 | No text annotation | ||
| IL_4D67_085 | Isolated tWW turn | ||
| IL_4D67_086 | Major groove platform; stack outside cWW | ||
| IL_4D67_188 | No text annotation | ||
| IL_4D67_087 | Intercalated tWH | ||
| IL_4D67_088 | No text annotation | ||
| IL_4D67_089 | Isolated non-canonical cWW pair | ||
| IL_4D67_090 | No text annotation | ||
| IL_4D67_091 | Single bulged A | ||
| IL_4D67_092 | Kink-turn related | ||
| IL_4D67_093 | Major groove intercalation | ||
| IL_4D67_094 | Multiple bulged bases | ||
| IL_4D67_095 | No text annotation | ||
| IL_4D67_096 | No text annotation | ||
| IL_4D67_097 | No text annotation | ||
| IL_4D67_098 | Single stack bend | ||
| IL_4D67_099 | Bulged stacked bases | ||
| IL_4D67_100 | No text annotation | ||
| IL_4D67_101 | No text annotation | ||
| IL_4D67_102 | Major groove platform with intercalation | ||
| IL_4D67_189 | Single bulged U | ||
| IL_4D67_103 | Isolated non-canonical cWW pair | ||
| IL_4D67_104 | Minor groove platform | ||
| IL_4D67_105 | No text annotation | ||
| IL_4D67_190 | No text annotation | ||
| IL_4D67_106 | No text annotation | ||
| IL_4D67_219 | No text annotation | ||
| IL_4D67_191 | No text annotation | ||
| IL_4D67_107 | Isolated non-canonical cWW pair | ||
| IL_4D67_108 | No text annotation | ||
| IL_4D67_192 | No text annotation | ||
| IL_4D67_193 | No text annotation | ||
| IL_4D67_109 | No text annotation | ||
| IL_4D67_110 | No text annotation | ||
| IL_4D67_111 | Single bulged A | ||
| IL_4D67_112 | Isolated tHS basepair with bulges | ||
| IL_4D67_113 | Tandem non-canonical cWW pairs | ||
| IL_4D67_114 | Single stack bend | ||
| IL_4D67_115 | Major groove platform | ||
| IL_4D67_116 | Isolated non-canonical cWW pair | ||
| IL_4D67_117 | Major groove platform | ||
| IL_4D67_118 | Major groove minor groove platform with extra cWW | ||
| IL_4D67_119 | No text annotation | ||
| IL_4D67_120 | Major groove platform | ||
| IL_4D67_121 | No text annotation | ||
| IL_4D67_194 | No text annotation | ||
| IL_4D67_122 | Multiple bulged bases | ||
| IL_4D67_123 | Isolated non-canonical cWW pair | ||
| IL_4D67_124 | No text annotation | ||
| IL_4D67_125 | Isolated non-canonical cWW pair | ||
| IL_4D67_195 | Single bulged A | ||
| IL_4D67_126 | No text annotation | ||
| IL_4D67_196 | No text annotation | ||
| IL_4D67_127 | No text annotation | ||
| IL_4D67_128 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4D67_129 | No text annotation | ||
| IL_4D67_220 | No text annotation | ||
| IL_4D67_197 | No text annotation | ||
| IL_4D67_130 | UAA/GAN related | ||
| IL_4D67_131 | Tandem non-canonical cWW pairs | ||
| IL_4D67_198 | No text annotation | ||
| IL_4D67_132 | Isolated cWS basepair | ||
| IL_4D67_133 | UAA/GAN with extra cWW | ||
| IL_4D67_199 | UAA/GAN | ||
| IL_4D67_134 | No text annotation | ||
| IL_4D67_200 | Minor groove platform | ||
| IL_4D67_135 | Tandem non-canonical cWW pairs | ||
| IL_4D67_201 | No text annotation | ||
| IL_4D67_202 | Tandem non-canonical cWW pairs | ||
| IL_4D67_136 | Isolated non-canonical cWW pair | ||
| IL_4D67_221 | No text annotation | ||
| IL_4D67_137 | No text annotation | ||
| IL_4D67_138 | No text annotation | ||
| IL_4D67_139 | Isolated non-canonical cWW pair | ||
| IL_4D67_203 | Multiple bulged bases | ||
| IL_4D67_204 | No text annotation | ||
| IL_4D67_140 | No text annotation | ||
| IL_4D67_141 | No text annotation | ||
| IL_4D67_142 | Minor groove platform | ||
| IL_4D67_143 | Single bulged G | ||
| IL_4D67_144 | Tandem non-canonical cWW pairs | ||
| IL_4D67_145 | No text annotation | ||
| IL_4D67_146 | Single bulged U | ||
| IL_4D67_205 | No text annotation | ||
| IL_4D67_147 | No text annotation | ||
| IL_4D67_148 | No text annotation | ||
| IL_4D67_149 | Single bulged U | ||
| IL_4D67_150 | Double sheared; A in syn | ||
| IL_4D67_206 | Isolated non-canonical cWW with bulges | ||
| IL_4D67_151 | No text annotation | ||
| IL_4D67_152 | Single bulged U | ||
| IL_4D67_153 | Single stack bend with SAM intercalation | ||
| IL_4D67_154 | Multiple bulged bases | ||
| IL_4D67_155 | Minor groove platform related | ||
| IL_4D67_207 | No text annotation | ||
| IL_4D67_156 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4D67_157 | Isolated cWH basepair | ||
| IL_4D67_158 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4D67_017 | No text annotation | ||
| J3_4D67_001 | No text annotation | ||
| J3_4D67_035 | No text annotation | ||
| J3_4D67_018 | No text annotation | ||
| J3_4D67_036 | No text annotation | ||
| J3_4D67_019 | No text annotation | ||
| J3_4D67_037 | No text annotation | ||
| J3_4D67_020 | No text annotation | ||
| J3_4D67_021 | No text annotation | ||
| J3_4D67_038 | No text annotation | ||
| J3_4D67_022 | No text annotation | ||
| J3_4D67_002 | No text annotation | ||
| J3_4D67_003 | No text annotation | ||
| J3_4D67_023 | No text annotation | ||
| J3_4D67_039 | No text annotation | ||
| J3_4D67_004 | No text annotation | ||
| J3_4D67_040 | No text annotation | ||
| J3_4D67_024 | No text annotation | ||
| J3_4D67_005 | No text annotation | ||
| J3_4D67_006 | No text annotation | ||
| J3_4D67_041 | No text annotation | ||
| J3_4D67_025 | No text annotation | ||
| J3_4D67_007 | No text annotation | ||
| J3_4D67_008 | No text annotation | ||
| J3_4D67_026 | No text annotation | ||
| J3_4D67_042 | No text annotation | ||
| J3_4D67_027 | No text annotation | ||
| J3_4D67_043 | No text annotation | ||
| J3_4D67_028 | No text annotation | ||
| J3_4D67_009 | No text annotation | ||
| J3_4D67_010 | No text annotation | ||
| J3_4D67_029 | No text annotation | ||
| J3_4D67_044 | No text annotation | ||
| J3_4D67_011 | No text annotation | ||
| J3_4D67_030 | No text annotation | ||
| J3_4D67_031 | No text annotation | ||
| J3_4D67_012 | No text annotation | ||
| J3_4D67_032 | No text annotation | ||
| J3_4D67_013 | No text annotation | ||
| J3_4D67_033 | No text annotation | ||
| J3_4D67_014 | No text annotation | ||
| J3_4D67_034 | No text annotation | ||
| J3_4D67_015 | No text annotation | ||
| J3_4D67_016 | No text annotation | ||
| J4_4D67_001 | No text annotation | ||
| J4_4D67_010 | No text annotation | ||
| J4_4D67_002 | No text annotation | ||
| J4_4D67_003 | No text annotation | ||
| J4_4D67_004 | No text annotation | ||
| J4_4D67_011 | No text annotation | ||
| J4_4D67_005 | No text annotation | ||
| J4_4D67_006 | No text annotation | ||
| J4_4D67_007 | No text annotation | ||
| J4_4D67_008 | No text annotation | ||
| J4_4D67_009 | No text annotation | ||
| J5_4D67_001 | No text annotation | ||
| J5_4D67_002 | No text annotation | ||
| J5_4D67_003 | No text annotation | ||
| J5_4D67_005 | No text annotation | ||
| J5_4D67_004 | No text annotation | ||
| J6_4D67_003 | No text annotation | ||
| J6_4D67_001 | No text annotation | ||
| J6_4D67_004 | No text annotation | ||
| J6_4D67_002 | No text annotation | ||
| J7_4D67_001 | No text annotation | ||
| J9_4D67_002 | No text annotation | ||
| J9_4D67_001 | No text annotation |
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