4V6L Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V6L_001 | 1/AA/12:22 | No text annotation Not in a motif group | ||
| HL_4V6L_002 | 1/AA/82:87 | No text annotation Not in a motif group | geometric HL_4L8H_001 HL_53837.1 | |
| HL_4V6L_003 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_4V6L_004 | 1/AA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_4V6L_005 | 1/AA/207:212 | UNCG Not in a motif group | geometric HL_1I6U_001 HL_03562.2 | |
| HL_4V6L_006 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_4V6L_007 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_4V6L_008 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V6L_009 | 1/AA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_4V6L_010 | 1/AA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_4V6L_011 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_4V6L_012 | 1/AA/462:470 | No text annotation Not in a motif group | geometric HL_5J7L_151 HL_90617.2 | |
| HL_4V6L_013 | 1/AA/521:528 | No text annotation Not in a motif group | ||
| HL_4V6L_014 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_4V6L_015 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_4V6L_016 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_4V6L_017 | 1/AA/785:797 | No text annotation Not in a motif group | ||
| HL_4V6L_018 | 1/AA/839:847 | No text annotation Not in a motif group | homologous HL_5J7L_018 HL_34168.2 | |
| HL_4V6L_019 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_4V6L_020 | 1/AA/897:902 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_4V6L_021 | 1/AA/962:973 | No text annotation Not in a motif group | geometric HL_5B63_003 HL_25462.2 | |
| HL_4V6L_022 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_4V6L_023 | 1/AA/1028:1033 | UNCG Not in a motif group | geometric HL_1I6U_001 HL_03562.2 | |
| HL_4V6L_024 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_6CZR_095 HL_42097.1 | |
| HL_4V6L_025 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4V6L_026 | 1/AA/1134:1140 | No text annotation Not in a motif group | homologous HL_5J7L_025 HL_03562.2 | |
| HL_4V6L_027 | 1/AA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_4V6L_028 | 1/AA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_4V6L_029 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_4V6L_030 | 1/AA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_4V6L_031 | 1/AA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_4V6L_032 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4V6L_033 | 1/AB/13:22 | No text annotation Not in a motif group | homologous HL_1QF6_001 NA | |
| HL_4V6L_034 | 1/AB/30:40 | No text annotation Not in a motif group | homologous HL_5IB8_208 NA | |
| HL_4V6L_035 | 1/AB/53:61 | No text annotation Not in a motif group | homologous HL_5E81_207 NA | |
| HL_4V6L_036 | 1/AE/13:22 | No text annotation Not in a motif group | homologous HL_4YYE_001 NA | |
| HL_4V6L_037 | 1/AE/30:40 | No text annotation Not in a motif group | homologous HL_1B23_002 NA | |
| HL_4V6L_038 | 1/AE/53:61 | No text annotation Not in a motif group | homologous HL_5IBB_211 NA | |
| HL_4V6L_039 | 1/BA/38:44 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_4V6L_040 | 1/BA/85:91 | No text annotation Not in a motif group | ||
| HL_4V6L_041 | 1/BB/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_4V6L_042 | 1/BB/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_4V6L_043 | 1/BB/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_4V6L_044 | 1/BB/137:142 | No text annotation Not in a motif group | ||
| HL_4V6L_045 | 1/BB/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_4V6L_046 | 1/BB/194:201 | No text annotation Not in a motif group | geometric HL_4V9F_006 HL_06192.2 | |
| HL_4V6L_047 | 1/BB/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_4V6L_048 | 1/BB/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_4V6L_049 | 1/BB/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_4WF9_010 HL_89380.2 | |
| HL_4V6L_050 | 1/BB/319:323 | No text annotation Not in a motif group | homologous HL_4WF9_011 HL_75407.1 | |
| HL_4V6L_051 | 1/BB/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_4V6L_052 | 1/BB/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_4V6L_053 | 1/BB/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4V6L_054 | 1/BB/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4V6L_055 | 1/BB/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_4V6L_056 | 1/BB/540:553 | No text annotation Not in a motif group | ||
| HL_4V6L_057 | 1/BB/564:577 | No text annotation Not in a motif group | ||
| HL_4V6L_058 | 1/BB/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_4V6L_059 | 1/BB/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_4V6L_060 | 1/BB/641:647 | No text annotation Not in a motif group | ||
| HL_4V6L_061 | 1/BB/712:719 | No text annotation Not in a motif group | ||
| HL_4V6L_062 | 1/BB/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
| HL_4V6L_063 | 1/BB/779:785 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_4V6L_064 | 1/BB/826:831 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_64365.1 | |
| HL_4V6L_065 | 1/BB/885:891 | No text annotation Not in a motif group | geometric HL_3IGI_004 HL_30784.2 | |
| HL_4V6L_066 | 1/BB/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
| HL_4V6L_067 | 1/BB/977:986 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_4V6L_068 | 1/BB/1064:1074 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_75407.1 | |
| HL_4V6L_069 | 1/BB/1092:1099 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.2 | |
| HL_4V6L_070 | 1/BB/1172:1177 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_4V6L_071 | 1/BB/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_4V6L_072 | 1/BB/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_4V6L_073 | 1/BB/1324:1330 | No text annotation Not in a motif group | geometric HL_7A0S_033 HL_46680.1 | |
| HL_4V6L_074 | 1/BB/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_4V6L_075 | 1/BB/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_4V6L_076 | 1/BB/1450:1461 | No text annotation Not in a motif group | ||
| HL_4V6L_077 | 1/BB/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_4V6L_078 | 1/BB/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_03562.2 | |
| HL_4V6L_079 | 1/BB/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_4V6L_080 | 1/BB/1612:1619 | No text annotation Not in a motif group | ||
| HL_4V6L_081 | 1/BB/1629:1637 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_4V6L_082 | 1/BB/1691:1696 | UNCG Not in a motif group | geometric HL_4LFB_011 HL_03562.2 | |
| HL_4V6L_083 | 1/BB/1728:1731 | No text annotation Not in a motif group | geometric HL_5VW1_002 HL_38927.2 | |
| HL_4V6L_084 | 1/BB/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_4V6L_085 | 1/BB/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_4V6L_086 | 1/BB/1806:1811 | No text annotation Not in a motif group | homologous HL_4WF9_044 NA | |
| HL_4V6L_087 | 1/BB/1868:1873 | No text annotation Not in a motif group | homologous HL_4WF9_045 NA | |
| HL_4V6L_088 | 1/BB/1910:1920 | No text annotation Not in a motif group | homologous HL_5J7L_181 NA | |
| HL_4V6L_089 | 1/BB/1949:1957 | No text annotation Not in a motif group | homologous HL_7A0S_048 HL_51824.1 | |
| HL_4V6L_090 | 1/BB/2027:2036 | No text annotation Not in a motif group | ||
| HL_4V6L_091 | 1/BB/2143:2148 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_4V6L_092 | 1/BB/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_4V6L_093 | 1/BB/2246:2258 | No text annotation Not in a motif group | ||
| HL_4V6L_094 | 1/BB/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_4V6L_095 | 1/BB/2303:2313 | No text annotation Not in a motif group | geometric HL_4V9F_011 HL_75407.1 | |
| HL_4V6L_096 | 1/BB/2324:2331 | No text annotation Not in a motif group | homologous HL_4WF9_052 HL_12078.2 | |
| HL_4V6L_097 | 1/BB/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_4V6L_098 | 1/BB/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_4V6L_099 | 1/BB/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_4V6L_100 | 1/BB/2471:2479 | No text annotation Not in a motif group | homologous HL_7A0S_059 HL_06192.2 | |
| HL_4V6L_101 | 1/BB/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_4V6L_102 | 1/BB/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4V6L_103 | 1/BB/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_4V6L_104 | 1/BB/2658:2663 | GNRA Not in a motif group | homologous HL_4WF9_060 HL_42097.1 | |
| HL_4V6L_105 | 1/BB/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_7A0S_064 HL_46680.1 | |
| HL_4V6L_106 | 1/BB/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_4V6L_107 | 1/BB/2796:2800 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_53837.1 | |
| HL_4V6L_108 | 1/BB/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_4V6L_109 | 1/BB/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V6L_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_4V6L_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_4V6L_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_4V6L_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_4V6L_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_4V6L_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_4V6L_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_4V6L_008 | 1/AA/75:76, 1/AA/93:95 | Single bulged G Not in a motif group | geometric IL_5DEA_002 IL_00225.2 | |
| IL_4V6L_009 | 1/AA/128:131, 1/AA/231:233 | No text annotation Not in a motif group | ||
| IL_4V6L_010 | 1/AA/132:136, 1/AA/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
| IL_4V6L_011 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_4V6L_012 | 1/AA/202:207, 1/AA/212:215 | No text annotation Not in a motif group | ||
| IL_4V6L_013 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_4V6L_014 | 1/AA/249:253, 1/AA/273:275 | No text annotation Not in a motif group | ||
| IL_4V6L_015 | 1/AA/292:294, 1/AA/303:308 | No text annotation Not in a motif group | ||
| IL_4V6L_016 | 1/AA/367:369, 1/AA/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_4V6L_017 | 1/AA/371:376, 1/AA/387:390 | No text annotation Not in a motif group | ||
| IL_4V6L_018 | 1/AA/409:416, 1/AA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4V6L_019 | 1/AA/440:442, 1/AA/492:497 | No text annotation Not in a motif group | ||
| IL_4V6L_020 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_88269.3 | |
| IL_4V6L_021 | 1/AA/450:455, 1/AA/477:483 | No text annotation Not in a motif group | homologous IL_5J7L_023 IL_70801.1 | |
| IL_4V6L_022 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_4V6L_023 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_4V6L_024 | 1/AA/569:575, 1/AA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_4V6L_025 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_4V6L_026 | 1/AA/594:597, 1/AA/643:645 | No text annotation Not in a motif group | ||
| IL_4V6L_027 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_4V6L_028 | 1/AA/603:612, 1/AA/628:635 | No text annotation Not in a motif group | ||
| IL_4V6L_029 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_50694.2 | |
| IL_4V6L_030 | 1/AA/659:661, 1/AA/744:747 | No text annotation Not in a motif group | ||
| IL_4V6L_031 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_4V6L_032 | 1/AA/684:688, 1/AA/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_4V6L_033 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_4V6L_034 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_4V6L_035 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4V6L_036 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_4V6L_037 | 1/AA/925:928, 1/AA/1389:1391 | No text annotation Not in a motif group | geometric IL_5H1K_001 IL_95997.1 | |
| IL_4V6L_038 | 1/AA/932:935, 1/AA/1380:1385 | No text annotation Not in a motif group | ||
| IL_4V6L_039 | 1/AA/941:943, 1/AA/1340:1342 | Isolated cWS basepair Not in a motif group | geometric IL_5TBW_047 IL_52767.2 | |
| IL_4V6L_040 | 1/AA/953:954, 1/AA/1226:1228 | No text annotation Not in a motif group | ||
| IL_4V6L_041 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform Not in a motif group | homologous IL_5J7L_043 IL_47078.1 | |
| IL_4V6L_042 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
| IL_4V6L_043 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U Not in a motif group | geometric IL_5J7L_046 IL_83039.13 | |
| IL_4V6L_044 | 1/AA/1050:1052, 1/AA/1206:1208 | No text annotation Not in a motif group | geometric IL_5TBW_021 IL_95997.1 | |
| IL_4V6L_045 | 1/AA/1052:1056, 1/AA/1204:1206 | No text annotation Not in a motif group | homologous IL_6CZR_154 IL_76319.2 | |
| IL_4V6L_046 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_4V6L_047 | 1/AA/1060:1063, 1/AA/1193:1197 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.2 | |
| IL_4V6L_048 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_4V6L_049 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_4V6L_050 | 1/AA/1158:1162, 1/AA/1174:1181 | No text annotation Not in a motif group | ||
| IL_4V6L_051 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_4V6L_052 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | ||
| IL_4V6L_053 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_4V6L_054 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_4V6L_055 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_4V6L_056 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4V6L_057 | 1/AA/1405:1409, 1/AA/1491:1496 | No text annotation Not in a motif group | homologous IL_4LFB_058 NA | |
| IL_4V6L_058 | 1/AA/1412:1414, 1/AA/1486:1488 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_95997.1 | |
| IL_4V6L_059 | 1/AA/1416:1420, 1/AA/1480:1484 | No text annotation Not in a motif group | ||
| IL_4V6L_060 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_4V6L_061 | 1/AA/1440:1442, 1/AA/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_42622.2 | |
| IL_4V6L_062 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 | |
| IL_4V6L_063 | 1/BA/17:19, 1/BA/64:67 | Single bulged G, near cWW Not in a motif group | geometric IL_5J7L_008 IL_82068.2 | |
| IL_4V6L_064 | 1/BA/23:28, 1/BA/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4V6L_065 | 1/BA/30:32, 1/BA/50:54 | No text annotation Not in a motif group | ||
| IL_4V6L_066 | 1/BA/34:38, 1/BA/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_4V9F_104 IL_58103.6 | |
| IL_4V6L_067 | 1/BA/71:79, 1/BA/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_4V6L_068 | 1/BB/24:30, 1/BB/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_4V6L_069 | 1/BB/36:37, 1/BB/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_4V6L_070 | 1/BB/43:45, 1/BB/433:436 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_4V6L_071 | 1/BB/82:85, 1/BB/97:104 | No text annotation Not in a motif group | ||
| IL_4V6L_072 | 1/BB/183:184, 1/BB/212:214 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_76488.2 | |
| IL_4V6L_073 | 1/BB/188:194, 1/BB/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_4V6L_074 | 1/BB/239:245, 1/BB/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_4V6L_075 | 1/BB/269:271, 1/BB/366:370 | No text annotation Not in a motif group | ||
| IL_4V6L_076 | 1/BB/274:281, 1/BB/359:363 | No text annotation Not in a motif group | ||
| IL_4V6L_077 | 1/BB/293:295, 1/BB/343:347 | No text annotation Not in a motif group | ||
| IL_4V6L_078 | 1/BB/481:484, 1/BB/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
| IL_4V6L_079 | 1/BB/536:539, 1/BB/554:557 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_4V6L_080 | 1/BB/606:610, 1/BB/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_4V6L_081 | 1/BB/672:674, 1/BB/806:808 | No text annotation Not in a motif group | geometric IL_5TBW_046 IL_95997.1 | |
| IL_4V6L_082 | 1/BB/674:678, 1/BB/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.6 | |
| IL_4V6L_083 | 1/BB/697:698, 1/BB/763:765 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.2 | |
| IL_4V6L_084 | 1/BB/702:707, 1/BB/724:730 | No text annotation Not in a motif group | ||
| IL_4V6L_085 | 1/BB/738:740, 1/BB/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_4V6L_086 | 1/BB/775:777, 1/BB/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7A0S_021 IL_90991.6 | |
| IL_4V6L_087 | 1/BB/842:848, 1/BB/930:936 | No text annotation Not in a motif group | ||
| IL_4V6L_088 | 1/BB/849:851, 1/BB/926:929 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_4V6L_089 | 1/BB/856:862, 1/BB/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_4V6L_090 | 1/BB/862:863, 1/BB/913:915 | Single bulged G Not in a motif group | geometric IL_4C7O_004 IL_00225.2 | |
| IL_4V6L_091 | 1/BB/864:868, 1/BB/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_4V6L_092 | 1/BB/870:873, 1/BB/904:907 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_008 IL_30621.2 | |
| IL_4V6L_093 | 1/BB/875:879, 1/BB/898:902 | No text annotation Not in a motif group | ||
| IL_4V6L_094 | 1/BB/880:881, 1/BB/895:897 | No text annotation Not in a motif group | ||
| IL_4V6L_095 | 1/BB/994:996, 1/BB/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_4V6L_096 | 1/BB/998:1002, 1/BB/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
| IL_4V6L_097 | 1/BB/1004:1011, 1/BB/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_4V6L_098 | 1/BB/1011:1013, 1/BB/1149:1150 | No text annotation Not in a motif group | ||
| IL_4V6L_099 | 1/BB/1017:1024, 1/BB/1140:1145 | No text annotation Not in a motif group | ||
| IL_4V6L_100 | 1/BB/1024:1030, 1/BB/1124:1140 | No text annotation Not in a motif group | ||
| IL_4V6L_101 | 1/BB/1031:1034, 1/BB/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_4V6L_102 | 1/BB/1038:1041, 1/BB/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_4V6L_103 | 1/BB/1043:1051, 1/BB/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.4 | |
| IL_4V6L_104 | 1/BB/1059:1062, 1/BB/1076:1079 | No text annotation Not in a motif group | homologous IL_6PRV_001 IL_23544.2 | |
| IL_4V6L_105 | 1/BB/1087:1090, 1/BB/1101:1102 | Major groove platform Not in a motif group | geometric IL_3NKB_002 IL_27635.1 | |
| IL_4V6L_106 | 1/BB/1196:1198, 1/BB/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7A0S_041 IL_52767.2 | |
| IL_4V6L_107 | 1/BB/1202:1206, 1/BB/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_4V6L_108 | 1/BB/1208:1215, 1/BB/1234:1238 | Kink-turn Not in a motif group | homologous IL_7A0S_043 IL_70923.2 | |
| IL_4V6L_109 | 1/BB/1262:1270, 1/BB/2010:2017 | No text annotation Not in a motif group | ||
| IL_4V6L_110 | 1/BB/1310:1313, 1/BB/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_4V6L_111 | 1/BB/1319:1324, 1/BB/1330:1333 | No text annotation Not in a motif group | ||
| IL_4V6L_112 | 1/BB/1351:1355, 1/BB/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_4V6L_113 | 1/BB/1357:1361, 1/BB/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_4V6L_114 | 1/BB/1415:1416, 1/BB/1582:1587 | No text annotation Not in a motif group | ||
| IL_4V6L_115 | 1/BB/1417:1421, 1/BB/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_4V6L_116 | 1/BB/1432:1435, 1/BB/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_4V6L_117 | 1/BB/1437:1441, 1/BB/1550:1555 | No text annotation Not in a motif group | ||
| IL_4V6L_118 | 1/BB/1468:1471, 1/BB/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_4V6L_119 | 1/BB/1474:1478, 1/BB/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_4V6L_120 | 1/BB/1480:1483, 1/BB/1506:1511 | No text annotation Not in a motif group | ||
| IL_4V6L_121 | 1/BB/1489:1491, 1/BB/1499:1500 | No text annotation Not in a motif group | ||
| IL_4V6L_122 | 1/BB/1526:1529, 1/BB/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_4V6L_123 | 1/BB/1651:1656, 1/BB/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_4V6L_124 | 1/BB/1663:1665, 1/BB/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_4V6L_125 | 1/BB/1666:1669, 1/BB/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_4V6L_126 | 1/BB/1669:1674, 1/BB/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
| IL_4V6L_127 | 1/BB/1686:1691, 1/BB/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7A0S_063 IL_65969.2 | |
| IL_4V6L_128 | 1/BB/1712:1718, 1/BB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_4V6L_129 | 1/BB/1720:1724, 1/BB/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
| IL_4V6L_130 | 1/BB/1727:1728, 1/BB/1731:1733 | Single bulged C Not in a motif group | homologous IL_5J7L_311 IL_61258.12 | |
| IL_4V6L_131 | 1/BB/1770:1771, 1/BB/1980:1982 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_4V6L_132 | 1/BB/1798:1804, 1/BB/1813:1821 | No text annotation Not in a motif group | ||
| IL_4V6L_133 | 1/BB/1837:1840, 1/BB/1902:1903 | No text annotation Not in a motif group | homologous IL_4WF9_070 NA | |
| IL_4V6L_134 | 1/BB/1841:1842, 1/BB/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4WF9_071 IL_69996.1 | |
| IL_4V6L_135 | 1/BB/1846:1849, 1/BB/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_4PDB_002 IL_09061.6 | |
| IL_4V6L_136 | 1/BB/1864:1867, 1/BB/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_4V6L_137 | 1/BB/1933:1934, 1/BB/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_59677.2 | |
| IL_4V6L_138 | 1/BB/1934:1945, 1/BB/1961:1964 | No text annotation Not in a motif group | ||
| IL_4V6L_139 | 1/BB/2050:2052, 1/BB/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_4V6L_140 | 1/BB/2053:2056, 1/BB/2612:2616 | No text annotation Not in a motif group | ||
| IL_4V6L_141 | 1/BB/2064:2066, 1/BB/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_4V6L_142 | 1/BB/2067:2070, 1/BB/2441:2443 | No text annotation Not in a motif group | homologous IL_5J7L_323 NA | |
| IL_4V6L_143 | 1/BB/2070:2071, 1/BB/2438:2441 | Minor groove platform Not in a motif group | geometric IL_4WF9_081 IL_42622.2 | |
| IL_4V6L_144 | 1/BB/2081:2083, 1/BB/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7A0S_077 IL_38958.7 | |
| IL_4V6L_145 | 1/BB/2085:2087, 1/BB/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_4V6L_146 | 1/BB/2103:2107, 1/BB/2182:2186 | No text annotation Not in a motif group | ||
| IL_4V6L_147 | 1/BB/2107:2110, 1/BB/2179:2182 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.2 | |
| IL_4V6L_148 | 1/BB/2110:2120, 1/BB/2178:2179 | No text annotation Not in a motif group | ||
| IL_4V6L_149 | 1/BB/2201:2204, 1/BB/2220:2222 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3KTW_002 IL_82068.2 | |
| IL_4V6L_150 | 1/BB/2350:2353, 1/BB/2364:2367 | Double sheared Not in a motif group | homologous IL_4WF9_087 IL_09705.9 | |
| IL_4V6L_151 | 1/BB/2401:2403, 1/BB/2414:2415 | Major groove platform Not in a motif group | homologous IL_7A0S_082 IL_27635.1 | |
| IL_4V6L_152 | 1/BB/2453:2456, 1/BB/2495:2500 | No text annotation Not in a motif group | ||
| IL_4V6L_153 | 1/BB/2456:2459, 1/BB/2493:2495 | No text annotation Not in a motif group | homologous IL_5J7L_336 NA | |
| IL_4V6L_154 | 1/BB/2459:2461, 1/BB/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_4V9F_084 IL_92788.2 | |
| IL_4V6L_155 | 1/BB/2466:2470, 1/BB/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_4V6L_156 | 1/BB/2507:2509, 1/BB/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_4V6L_157 | 1/BB/2510:2513, 1/BB/2571:2578 | No text annotation Not in a motif group | ||
| IL_4V6L_158 | 1/BB/2522:2523, 1/BB/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_4WF9_097 IL_95601.3 | |
| IL_4V6L_159 | 1/BB/2588:2590, 1/BB/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_4V6L_160 | 1/BB/2591:2592, 1/BB/2601:2603 | Single bulged A Not in a motif group | homologous IL_5J7L_344 IL_37497.2 | |
| IL_4V6L_161 | 1/BB/2636:2640, 1/BB/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_4V6L_162 | 1/BB/2652:2658, 1/BB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_4V6L_163 | 1/BB/2680:2684, 1/BB/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_4V6L_164 | 1/BB/2687:2691, 1/BB/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_4V6L_165 | 1/BB/2695:2696, 1/BB/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_4V6L_166 | 1/BB/2737:2742, 1/BB/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_4V6L_167 | 1/BB/2806:2811, 1/BB/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_4V6L_168 | 1/BB/2838:2839, 1/BB/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_4WF9_106 IL_16396.2 | |
| IL_4V6L_169 | 1/BB/2843:2846, 1/BB/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_4V6L_170 | 1/BB/2847:2852, 1/BB/2865:2869 | No text annotation Not in a motif group | homologous IL_7A0S_101 IL_83162.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V6L_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation Not in a motif group | ||
| J3_4V6L_002 | 1/AA/586:590, 1/AA/649:654, 1/AA/754:755 | No text annotation Not in a motif group | ||
| J3_4V6L_003 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | ||
| J3_4V6L_004 | 1/AA/943:947, 1/AA/1234:1237, 1/AA/1337:1340 | No text annotation Not in a motif group | ||
| J3_4V6L_005 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4V6L_006 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | ||
| J3_4V6L_007 | 1/AA/1003:1006, 1/AA/1023:1027, 1/AA/1034:1037 | No text annotation Not in a motif group | ||
| J3_4V6L_008 | 1/AA/1063:1068, 1/AA/1107:1114, 1/AA/1186:1193 | No text annotation Not in a motif group | ||
| J3_4V6L_009 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_4V6L_010 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_4V6L_011 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
| J3_4V6L_012 | 1/BA/10:16, 1/BA/68:70, 1/BA/106:110 | No text annotation Not in a motif group | homologous J3_7A0S_014 NA | |
| J3_4V6L_013 | 1/BB/30:31, 1/BB/474:481, 1/BB/509:510 | No text annotation Not in a motif group | ||
| J3_4V6L_014 | 1/BB/56:57, 1/BB/70:76, 1/BB/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_4V6L_015 | 1/BB/682:689, 1/BB/773:775, 1/BB/791:795 | No text annotation Not in a motif group | ||
| J3_4V6L_016 | 1/BB/698:700, 1/BB/732:736, 1/BB/760:763 | No text annotation Not in a motif group | homologous J3_4WF9_003 NA | |
| J3_4V6L_017 | 1/BB/1053:1058, 1/BB/1080:1087, 1/BB/1102:1106 | No text annotation Not in a motif group | ||
| J3_4V6L_018 | 1/BB/1298:1303, 1/BB/1625:1627, 1/BB/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_4V6L_019 | 1/BB/1306:1309, 1/BB/1605:1611, 1/BB/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_4V6L_020 | 1/BB/2091:2093, 1/BB/2196:2200, 1/BB/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4V6L_021 | 1/BB/2295:2299, 1/BB/2317:2323, 1/BB/2332:2337 | No text annotation Not in a motif group | ||
| J3_4V6L_022 | 1/BB/2517:2520, 1/BB/2545:2547, 1/BB/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_4V6L_023 | 1/BB/2789:2791, 1/BB/2805:2806, 1/BB/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_4V6L_024 | 1/BB/2812:2815, 1/BB/2831:2836, 1/BB/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA |
Problematic loops
No problematic loops
Coloring options: