5GAK Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5GAK_001 | 1/1/31:53 | No text annotation Not in a motif group | ||
| HL_5GAK_002 | 1/1/69:74 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_5GAK_003 | 1/1/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_5GAK_004 | 1/1/132:136 | No text annotation Not in a motif group | geometric HL_4WF9_037 HL_94803.1 | |
| HL_5GAK_005 | 1/1/194:201 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_89380.2 | |
| HL_5GAK_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_5GAK_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_5GAK_008 | 1/1/278:287 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_5GAK_010 | 1/1/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_5GAK_011 | 1/1/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_5GAK_012 | 1/1/543:548 | No text annotation Not in a motif group | homologous HL_5TBW_012 HL_86373.2 | |
| HL_5GAK_013 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_5GAK_014 | 1/1/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_5GAK_015 | 1/1/686:694 | No text annotation Not in a motif group | homologous HL_5TBW_015 HL_03345.1 | |
| HL_5GAK_016 | 1/1/707:712 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_42097.1 | |
| HL_5GAK_017 | 1/1/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_5GAK_022 | 1/1/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_5GAK_025 | 1/1/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_5GAK_026 | 1/1/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_5GAK_030 | 1/1/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_5GAK_062 | 1/1/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_5GAK_063 | 1/1/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_5GAK_064 | 1/1/2920:2926 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_5GAK_066 | 1/1/3025:3030 | No text annotation Not in a motif group | homologous HL_8C3A_066 HL_42097.1 | |
| HL_5GAK_067 | 1/1/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_5GAK_068 | 1/1/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_5GAK_069 | 1/1/3194:3197 | No text annotation Not in a motif group | geometric HL_4WF9_037 HL_94803.1 | |
| HL_5GAK_070 | 1/1/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_5GAK_071 | 1/1/3303:3311 | No text annotation Not in a motif group | geometric HL_5J7L_201 HL_27930.1 | |
| HL_5GAK_072 | 1/1/3350:3353 | No text annotation Not in a motif group | ||
| HL_5GAK_073 | 1/3/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_87939.1 | |
| HL_5GAK_074 | 1/3/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_5GAK_075 | 1/4/47:56 | No text annotation Not in a motif group | geometric HL_7A0S_001 HL_99167.1 | |
| HL_5GAK_077 | 1/4/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_5GAK_078 | 1/4/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_5GAK_079 | 1/A/12:23 | No text annotation Not in a motif group | homologous HL_5E6M_001 HL_82231.1 | |
| HL_5GAK_080 | 1/A/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_5IBB_210 HL_53597.2 | |
| HL_5GAK_081 | 1/A/53:61 | No text annotation Not in a motif group | ||
| HL_5GAK_082 | 1/B/13:22 | No text annotation Not in a motif group | homologous HL_4YYE_001 NA | |
| HL_5GAK_083 | 1/B/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_6UFG_007 HL_53597.2 | |
| HL_5GAK_084 | 1/B/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V8N_145 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5GAK_009 | No text annotation | ||
| HL_5GAK_018 | No text annotation | ||
| HL_5GAK_019 | GNRA | ||
| HL_5GAK_020 | No text annotation | ||
| HL_5GAK_021 | No text annotation | ||
| HL_5GAK_023 | GNRA | ||
| HL_5GAK_024 | No text annotation | ||
| HL_5GAK_027 | No text annotation | ||
| HL_5GAK_028 | No text annotation | ||
| HL_5GAK_029 | No text annotation | ||
| HL_5GAK_031 | No text annotation | ||
| HL_5GAK_032 | No text annotation | ||
| HL_5GAK_033 | No text annotation | ||
| HL_5GAK_034 | No text annotation | ||
| HL_5GAK_035 | No text annotation | ||
| HL_5GAK_036 | GNRA | ||
| HL_5GAK_037 | No text annotation | ||
| HL_5GAK_038 | No text annotation | ||
| HL_5GAK_039 | No text annotation | ||
| HL_5GAK_040 | No text annotation | ||
| HL_5GAK_041 | No text annotation | ||
| HL_5GAK_042 | GNRA with one bulged base | ||
| HL_5GAK_043 | UNCG | ||
| HL_5GAK_044 | No text annotation | ||
| HL_5GAK_045 | No text annotation | ||
| HL_5GAK_046 | No text annotation | ||
| HL_5GAK_047 | No text annotation | ||
| HL_5GAK_048 | Other HL | ||
| HL_5GAK_049 | No text annotation | ||
| HL_5GAK_050 | No text annotation | ||
| HL_5GAK_051 | No text annotation | ||
| HL_5GAK_052 | No text annotation | ||
| HL_5GAK_053 | No text annotation | ||
| HL_5GAK_054 | No text annotation | ||
| HL_5GAK_055 | No text annotation | ||
| HL_5GAK_056 | No text annotation | ||
| HL_5GAK_057 | No text annotation | ||
| HL_5GAK_058 | No text annotation | ||
| HL_5GAK_059 | No text annotation | ||
| HL_5GAK_060 | No text annotation | ||
| HL_5GAK_061 | No text annotation | ||
| HL_5GAK_065 | GNRA | ||
| HL_5GAK_076 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5GAK_001 | 1/1/5:7, 1/4/152:154 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_017 IL_51629.2 | |
| IL_5GAK_002 | 1/1/7:8, 1/4/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_5GAK_003 | 1/1/8:12, 1/4/146:150 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_5GAK_004 | 1/1/12:15, 1/4/144:146 | No text annotation Not in a motif group | geometric IL_4V9F_105 IL_95997.1 | |
| IL_5GAK_005 | 1/1/27:28, 1/1/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_5GAK_006 | 1/1/82:89, 1/1/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_5GAK_007 | 1/1/123:124, 1/1/144:149 | No text annotation Not in a motif group | homologous IL_5TBW_007 IL_19724.2 | |
| IL_5GAK_008 | 1/1/125:127, 1/1/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_5GAK_009 | 1/1/163:165, 1/1/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_5GAK_010 | 1/1/169:170, 1/1/248:253 | No text annotation Not in a motif group | homologous IL_5TBW_010 IL_74684.1 | |
| IL_5GAK_011 | 1/1/177:179, 1/1/237:241 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_011 IL_63450.2 | |
| IL_5GAK_012 | 1/1/333:335, 1/4/28:30 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_51629.2 | |
| IL_5GAK_013 | 1/1/336:339, 1/4/25:27 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_5GAK_014 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_5GAK_015 | 1/1/404:412, 1/4/11:20 | No text annotation Not in a motif group | ||
| IL_5GAK_016 | 1/1/413:416, 1/4/7:10 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_67743.1 | |
| IL_5GAK_017 | 1/1/429:431, 1/1/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_5GAK_019 | 1/1/512:513, 1/1/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.2 | |
| IL_5GAK_020 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_5GAK_021 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_5GAK_023 | 1/1/668:670, 1/1/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_5GAK_024 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_5GAK_025 | 1/1/725:728, 1/1/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.1 | |
| IL_5GAK_026 | 1/1/752:753, 1/1/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.2 | |
| IL_5GAK_027 | 1/1/755:756, 1/1/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_5GAK_029 | 1/1/803:805, 1/1/938:940 | No text annotation Not in a motif group | homologous IL_8C3A_029 IL_95997.1 | |
| IL_5GAK_030 | 1/1/805:809, 1/1/931:938 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
| IL_5GAK_036 | 1/1/954:956, 1/1/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_5GAK_037 | 1/1/969:970, 1/1/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_5GAK_038 | 1/1/977:981, 1/1/1102:1104 | No text annotation Not in a motif group | homologous IL_5TBW_036 IL_67474.4 | |
| IL_5GAK_039 | 1/1/983:985, 1/1/1099:1100 | No text annotation Not in a motif group | ||
| IL_5GAK_049 | 1/1/1120:1123, 1/1/1135:1138 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_255D_001 IL_90802.1 | |
| IL_5GAK_050 | 1/1/1167:1171, 1/1/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_5GAK_051 | 1/1/1173:1180, 1/1/1325:1326 | No text annotation Not in a motif group | homologous IL_8C3A_052 IL_15861.7 | |
| IL_5GAK_052 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U Not in a motif group | geometric IL_7A0S_035 IL_83039.13 | |
| IL_5GAK_053 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation Not in a motif group | homologous IL_5TBW_051 IL_27086.1 | |
| IL_5GAK_054 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_5GAK_055 | 1/1/1207:1209, 1/1/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_5GAK_056 | 1/1/1217:1226, 1/1/1283:1288 | No text annotation Not in a motif group | ||
| IL_5GAK_059 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_5GAK_060 | 1/1/1385:1387, 1/1/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_5GAK_061 | 1/1/1388:1396, 1/1/1414:1419 | No text annotation Not in a motif group | ||
| IL_5GAK_062 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_5GAK_063 | 1/1/1444:1450, 1/1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_5GAK_095 | 1/1/2391:2394, 1/1/2986:2988 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_5GAK_107 | 1/1/2824:2826, 1/1/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_021 IL_95997.1 | |
| IL_5GAK_108 | 1/1/2826:2831, 1/1/2857:2863 | No text annotation Not in a motif group | ||
| IL_5GAK_109 | 1/1/2835:2839, 1/1/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_5GAK_110 | 1/1/2876:2877, 1/1/2949:2951 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_5GAK_111 | 1/1/2879:2881, 1/1/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_108 IL_90933.2 | |
| IL_5GAK_112 | 1/1/2881:2882, 1/1/2940:2943 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_5GAK_113 | 1/1/2889:2891, 1/1/2912:2914 | No text annotation Not in a motif group | homologous IL_8C3A_118 IL_51629.2 | |
| IL_5GAK_114 | 1/1/2891:2892, 1/1/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.3 | |
| IL_5GAK_115 | 1/1/2918:2920, 1/1/2926:2928 | No text annotation Not in a motif group | geometric IL_5TBW_127 IL_95997.1 | |
| IL_5GAK_119 | 1/1/3004:3007, 1/1/3139:3144 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.9 | |
| IL_5GAK_120 | 1/1/3012:3014, 1/1/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_5GAK_121 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_5GAK_122 | 1/1/3046:3051, 1/1/3091:3095 | No text annotation Not in a motif group | geometric IL_5TBW_062 IL_93630.2 | |
| IL_5GAK_123 | 1/1/3054:3059, 1/1/3084:3088 | No text annotation Not in a motif group | homologous IL_8C3A_127 IL_17136.1 | |
| IL_5GAK_124 | 1/1/3063:3064, 1/1/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_5GAK_125 | 1/1/3103:3107, 1/1/3127:3131 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.2 | |
| IL_5GAK_126 | 1/1/3164:3166, 1/1/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_5GAK_128 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | homologous IL_5TBW_123 IL_37497.2 | |
| IL_5GAK_129 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_5GAK_130 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_5GAK_131 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation Not in a motif group | homologous IL_5TBW_126 IL_19389.6 | |
| IL_5GAK_132 | 1/1/3233:3235, 1/1/3252:3254 | No text annotation Not in a motif group | geometric IL_7A0S_031 IL_95997.1 | |
| IL_5GAK_133 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_128 IL_30621.2 | |
| IL_5GAK_134 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_129 IL_30621.2 | |
| IL_5GAK_135 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_5GAK_136 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_5GAK_137 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation Not in a motif group | homologous IL_5TBW_133 IL_83162.5 | |
| IL_5GAK_138 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U Not in a motif group | geometric IL_3TZR_002 IL_83039.13 | |
| IL_5GAK_139 | 1/1/3342:3345, 1/1/3360:3363 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_5GAK_140 | 1/1/3349:3350, 1/1/3353:3356 | No text annotation Not in a motif group | ||
| IL_5GAK_141 | 1/3/15:16, 1/3/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_5GAK_142 | 1/3/21:27, 1/3/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_5GAK_143 | 1/3/28:29, 1/3/49:52 | Minor groove platform Not in a motif group | homologous IL_5TBW_374 IL_63797.2 | |
| IL_5GAK_144 | 1/3/29:30, 1/3/47:49 | Single stack bend Not in a motif group | geometric IL_4V9F_081 IL_76488.2 | |
| IL_5GAK_145 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.6 | |
| IL_5GAK_146 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_5GAK_147 | 1/3/84:87, 1/3/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_5GAK_148 | 1/4/63:64, 1/4/96:98 | Single base bend Not in a motif group | geometric IL_5IBB_340 IL_92001.1 | |
| IL_5GAK_149 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_82068.2 | |
| IL_5GAK_152 | 1/B/3:5, 1/B/68:70 | No text annotation Not in a motif group | homologous IL_4WSM_380 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5GAK_018 | No text annotation | ||
| IL_5GAK_022 | No text annotation | ||
| IL_5GAK_028 | No text annotation | ||
| IL_5GAK_031 | Single bulged G | ||
| IL_5GAK_032 | No text annotation | ||
| IL_5GAK_033 | Major groove platform with extra cWW | ||
| IL_5GAK_034 | No text annotation | ||
| IL_5GAK_035 | Multiple bulged bases | ||
| IL_5GAK_040 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5GAK_041 | No text annotation | ||
| IL_5GAK_042 | No text annotation | ||
| IL_5GAK_043 | Tandem non-canonical cWW pairs | ||
| IL_5GAK_044 | No text annotation | ||
| IL_5GAK_045 | Other IL | ||
| IL_5GAK_046 | No text annotation | ||
| IL_5GAK_047 | No text annotation | ||
| IL_5GAK_048 | No text annotation | ||
| IL_5GAK_057 | No text annotation | ||
| IL_5GAK_058 | No text annotation | ||
| IL_5GAK_064 | No text annotation | ||
| IL_5GAK_065 | UAA/GAN | ||
| IL_5GAK_066 | No text annotation | ||
| IL_5GAK_067 | No text annotation | ||
| IL_5GAK_068 | No text annotation | ||
| IL_5GAK_069 | No text annotation | ||
| IL_5GAK_070 | No text annotation | ||
| IL_5GAK_071 | No text annotation | ||
| IL_5GAK_072 | No text annotation | ||
| IL_5GAK_073 | Single bulged C | ||
| IL_5GAK_074 | No text annotation | ||
| IL_5GAK_075 | No text annotation | ||
| IL_5GAK_076 | No text annotation | ||
| IL_5GAK_077 | Kink-turn | ||
| IL_5GAK_078 | CC cWW | ||
| IL_5GAK_079 | No text annotation | ||
| IL_5GAK_080 | No text annotation | ||
| IL_5GAK_081 | No text annotation | ||
| IL_5GAK_082 | No text annotation | ||
| IL_5GAK_083 | No text annotation | ||
| IL_5GAK_084 | No text annotation | ||
| IL_5GAK_085 | CC cWW | ||
| IL_5GAK_086 | Single bulged A | ||
| IL_5GAK_087 | Kink-turn related | ||
| IL_5GAK_088 | No text annotation | ||
| IL_5GAK_089 | Major groove outside cWW, minor groove, intercalation pocket | ||
| IL_5GAK_090 | No text annotation | ||
| IL_5GAK_091 | No text annotation | ||
| IL_5GAK_092 | No text annotation | ||
| IL_5GAK_093 | Multiple bulged bases | ||
| IL_5GAK_094 | No text annotation | ||
| IL_5GAK_096 | No text annotation | ||
| IL_5GAK_097 | Single bulged U | ||
| IL_5GAK_098 | Minor groove platform | ||
| IL_5GAK_099 | Double sheared | ||
| IL_5GAK_100 | Single stack bend | ||
| IL_5GAK_101 | No text annotation | ||
| IL_5GAK_102 | Single bulged A | ||
| IL_5GAK_103 | No text annotation | ||
| IL_5GAK_104 | No text annotation | ||
| IL_5GAK_105 | No text annotation | ||
| IL_5GAK_106 | Major groove platform | ||
| IL_5GAK_116 | No text annotation | ||
| IL_5GAK_117 | No text annotation | ||
| IL_5GAK_118 | No text annotation | ||
| IL_5GAK_127 | No text annotation | ||
| IL_5GAK_150 | No text annotation | ||
| IL_5GAK_151 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5GAK_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation Not in a motif group | ||
| J3_5GAK_009 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_5GAK_010 | 1/1/3298:3300, 1/1/3314:3320, 1/1/3387:3390 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5GAK_002 | No text annotation | ||
| J3_5GAK_003 | No text annotation | ||
| J3_5GAK_004 | No text annotation | ||
| J3_5GAK_005 | No text annotation | ||
| J3_5GAK_006 | No text annotation | ||
| J3_5GAK_007 | No text annotation | ||
| J3_5GAK_008 | No text annotation |
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