Valid loops

#loop idlocationmotif
11/1/5:7,1/4/152:154NA
21/1/7:8,1/4/150:152NA
31/1/8:12,1/4/146:150NA
41/1/12:15,1/4/144:146NA
51/1/27:28,1/1/56:58NA
61/1/82:89,1/1/97:103NA
71/1/123:124,1/1/144:149NA
81/1/125:127,1/1/141:143NA
91/1/163:165,1/1/257:258NA
101/1/169:170,1/1/248:253NA
111/1/177:179,1/1/237:241NA
121/1/333:335,1/4/28:30NA
131/1/336:339,1/4/25:27NA
141/1/376:379,1/1/390:403NA
151/1/404:412,1/4/11:20NA
161/1/413:416,1/4/7:10NA
171/1/429:431,1/1/628:630NA
181/1/512:513,1/1/577:579NA
191/1/517:525,1/1/567:573NA
201/1/531:538,1/1/553:561NA
211/1/668:670,1/1/792:794NA
221/1/680:684,1/1/696:700NA
231/1/725:728,1/1/741:745NA
241/1/752:753,1/1/779:781NA
251/1/755:756,1/1/775:777NA
261/1/803:805,1/1/938:940NA
271/1/805:809,1/1/931:938NA
281/1/954:956,1/1/965:967NA
291/1/969:970,1/1/1111:1113NA
301/1/977:981,1/1/1102:1104NA
311/1/983:985,1/1/1099:1100NA
321/1/1120:1123,1/1/1135:1138NA
331/1/1167:1171,1/1/1328:1332NA
341/1/1173:1180,1/1/1325:1326NA
351/1/1180:1182,1/1/1324:1325NA
361/1/1187:1194,1/1/1314:1319NA
371/1/1194:1205,1/1/1299:1314NA
381/1/1207:1209,1/1/1296:1297NA
391/1/1217:1226,1/1/1283:1288NA
401/1/1376:1378,1/1/1428:1431NA
411/1/1385:1387,1/1/1420:1421NA
421/1/1388:1396,1/1/1414:1419NA
431/1/1398:1400,1/1/1411:1412NA
441/1/1444:1450,1/1/2354:2359NA
451/1/2391:2394,1/1/2986:2988NA
461/1/2824:2826,1/1/2863:2865NA
471/1/2826:2831,1/1/2857:2863NA
481/1/2835:2839,1/1/2849:2853NA
491/1/2876:2877,1/1/2949:2951NA
501/1/2879:2881,1/1/2943:2947NA
511/1/2881:2882,1/1/2940:2943NA
521/1/2889:2891,1/1/2912:2914NA
531/1/2891:2892,1/1/2909:2912NA
541/1/2918:2920,1/1/2926:2928NA
551/1/3004:3007,1/1/3139:3144NA
561/1/3012:3014,1/1/3040:3042NA
571/1/3018:3025,1/1/3030:3036NA
581/1/3046:3051,1/1/3091:3095NA
591/1/3054:3059,1/1/3084:3088NA
601/1/3063:3064,1/1/3077:3080NA
611/1/3103:3107,1/1/3127:3131NA
621/1/3164:3166,1/1/3284:3286NA
631/1/3177:3179,1/1/3210:3211NA
641/1/3179:3188,1/1/3204:3210NA
651/1/3193:3194,1/1/3197:3199NA
661/1/3225:3229,1/1/3258:3260NA
671/1/3233:3235,1/1/3252:3254NA
681/1/3235:3238,1/1/3249:3252NA
691/1/3300:3303,1/1/3311:3314NA
701/1/3324:3325,1/1/3381:3383NA
711/1/3328:3330,1/1/3373:3378NA
721/1/3332:3337,1/1/3367:3371NA
731/1/3340:3342,1/1/3363:3364NA
741/1/3342:3345,1/1/3360:3363NA
751/1/3349:3350,1/1/3353:3356NA
761/3/15:16,1/3/63:65NA
771/3/21:27,1/3/53:58NA
781/3/28:29,1/3/49:52NA
791/3/29:30,1/3/47:49NA
801/3/32:36,1/3/41:45NA
811/3/72:80,1/3/100:106NA
821/3/84:87,1/3/94:96NA
831/4/63:64,1/4/96:98NA
841/4/64:66,1/4/93:96NA
851/B/3:5,1/B/68:70NA

Problematic loops

#loop idProblemSequence
1435, 436, 437, 438, 439, 440, 494, 495, 618, 619, 620, 621, 622, 623, 624
2GAC,GUC
3758, 759, 760, 761, 762, 763, 768, 769, 770, 771, 772, 773
4833, 834, 859, 860, 861
5834, 835, 836, 837, 838, 855, 856, 857, 858, 859
6869, 870, 871, 872, 888, 889, 890
7873, 874, 875, 886, 887
8907, 908, 909, 919, 920, 921, 922, 923
9991, 992, 993, 994, 995, 996, 997, 1052, 1053, 1054, 1055, 1056, 1057, 1058
10997, 998, 1050, 1051, 1052
11999, 1000, 1001, 1002, 1003, 1004, 1046, 1047, 1048, 1049
121006, 1007, 1008, 1009, 1041, 1042, 1043, 1044
131009, 1010, 1011, 1039, 1040, 1041
141013, 1014, 1015, 1016, 1017, 1018, 1034, 1035, 1036, 1037
151018, 1019, 1020, 1032, 1033, 1034
161069, 1070, 1071, 1087, 1088, 1089
171074, 1075, 1076, 1083, 1084
181234, 1235, 1236, 1237, 1238, 1250, 1251, 1252, 1253, 1254
191262, 1263, 1264, 1265, 1266, 1275, 1276, 1277
201500, 1501, 1502, 1503, 1504, 1505, 1513, 1514, 1515, 1516
211532, 1533, 1534, 1535, 1536, 1585, 1586, 1587, 1588, 1589, 1590
221560, 1561, 1562, 1563, 1577, 1578, 1579
231563, 1564, 1565, 1574, 1575, 1576, 1577
241618, 1619, 1620, 1621, 1824, 1825, 1826
251623, 1624, 1625, 1626, 1627, 1816, 1817, 1818, 1819, 1820, 1821, 1822
261627, 1628, 1629, 1630, 1631, 1811, 1812, 1813, 1814, 1815, 1816
271645, 1646, 1647, 1648, 1649, 1806, 1807, 1808, 1809, 1810
281661, 1662, 1663, 1786, 1787, 1788
291669, 1670, 1778, 1779, 1780
301670, 1671, 1776, 1777, 1778
311694, 1695, 1696, 1697, 1698, 1747, 1748, 1749, 1750, 1751, 1752
321702, 1703, 1704, 1705, 1706, 1707, 1737, 1738, 1739, 1740, 1741, 1742, 1743
331711, 1712, 1713, 1714, 1715, 1716, 1717, 1727, 1728, 1729, 1730, 1731, 1732, 1733
34AGA,UCU
351883, 1884, 1885, 1886, 1887, 1888, 1889, 2346, 2347, 2348, 2349
361895, 1896, 1897, 2338, 2339, 2340
371898, 1899, 1900, 1901, 1902, 1903, 1904, 1905, 1906, 2333, 2334, 2335, 2336, 2337
381918, 1919, 1920, 1921, 1922, 1923, 1928, 1929, 1930, 1931, 1932, 1933, 1934
391940, 1941, 1942, 2106, 2107, 2108
401947, 1948, 2098, 2099, 2100, 2101
41AUC,GAU
422128, 2129, 2323, 2324, 2325
432156, 2157, 2158, 2159, 2160, 2161, 2173, 2174, 2175, 2176, 2177, 2178, 2179, 2180
442196, 2197, 2198, 2199, 2245, 2246
452200, 2201, 2241, 2242, 2243, 2244
462202, 2203, 2204, 2238, 2239, 2240
472204, 2205, 2206, 2207, 2208, 2209, 2210, 2235, 2236, 2237, 2238
482211, 2212, 2213, 2214, 2215, 2216, 2217, 2218, 2227, 2228, 2229, 2230, 2231, 2232, 2233, 2234
492276, 2277, 2307, 2308, 2309, 2310
502277, 2278, 2279, 2280, 2281, 2282, 2283, 2284, 2285, 2286, 2287, 2288, 2304, 2305, 2306, 2307
512396, 2397, 2398, 2981, 2982, 2983, 2984
522409, 2410, 2411, 2811, 2812
532412, 2413, 2807, 2808, 2809, 2810
542422, 2423, 2424, 2425, 2604, 2605, 2606, 2607, 2608
552444, 2445, 2501, 2502, 2503
562520, 2521, 2522, 2523, 2524, 2525, 2526, 2584, 2585, 2586, 2587
572614, 2615, 2625, 2626, 2627
582666, 2667, 2668, 2686, 2687, 2688, 2689, 2690
592718, 2719, 2720, 2721, 2735, 2736, 2737, 2738
602770, 2771, 2772, 2773, 2787, 2788
612823, 2824, 2865, 2866, 2867
622957, 2958, 2959, 2973, 2974, 2975
632960, 2961, 2970, 2971, 2972
64GUC,GAC
653168, 3169, 3170, 3280, 3281, 3282
66GUC,GAC
67CAGG,CCUG

Valid loops

#loop idlocationmotif
11/1/31:53NA
21/1/69:74NA
31/1/90:96NA
41/1/132:136NA
51/1/194:201NA
61/1/208:212NA
71/1/216:224NA
81/1/278:287NA
91/1/357:362NA
101/1/382:387NA
111/1/543:548NA
121/1/599:604NA
131/1/640:649NA
141/1/686:694NA
151/1/707:712NA
161/1/732:737NA
171/1/958:963NA
181/1/1126:1132NA
191/1/1148:1155NA
201/1/1403:1408NA
211/1/2840:2848NA
221/1/2897:2904NA
231/1/2920:2926NA
241/1/3025:3030NA
251/1/3068:3073NA
261/1/3110:3124NA
271/1/3194:3197NA
281/1/3240:3247NA
291/1/3303:3311NA
301/1/3350:3353NA
311/3/36:41NA
321/3/88:93NA
331/4/47:56NA
341/4/108:114NA
351/4/124:129NA
361/A/12:23NA
371/A/31:39NA
381/A/53:61NA
391/B/13:22NA
401/B/31:39NA
411/B/53:61NA

Problematic loops

#loop idProblemSequence
1303, 304, 305, 306, 307, 308, 309, 310, 311, 312
2763, 764, 765, 766, 767, 768
3844, 845, 846, 847, 848, 849
4876, 877, 878, 879, 880, 881, 882, 883, 884, 885
5910, 911, 912, 913, 914, 915, 916, 917, 918
61023, 1024, 1025, 1026, 1027, 1028, 1029
71076, 1077, 1078, 1079, 1080, 1081, 1082, 1083
81239, 1240, 1241, 1242, 1243, 1244, 1245, 1246, 1247, 1248, 1249
91266, 1267, 1268, 1269, 1270, 1271, 1272, 1273, 1274, 1275
101347, 1348, 1349, 1350, 1351, 1352, 1353, 1354, 1355, 1356, 1357
111462, 1463, 1464, 1465, 1466, 1467, 1468, 1469, 1470
121506, 1507, 1508, 1509, 1510, 1511, 1512
131544, 1545, 1546, 1547, 1548, 1549
141565, 1566, 1567, 1568, 1569, 1570, 1571, 1572, 1573, 1574
151599, 1600, 1601, 1602, 1603, 1604, 1605, 1606, 1607, 1608
161634, 1635, 1636, 1637, 1638, 1639
171680, 1681, 1682, 1683, 1684, 1685, 1686, 1687, 1688
181719, 1720, 1721, 1722, 1723, 1724, 1725
191759, 1760, 1761, 1762, 1763, 1764, 1765, 1766
201792, 1793, 1794, 1795, 1796
211844, 1845, 1846, 1847, 1848, 1849, 1850, 1851
221862, 1863, 1864, 1865, 1866, 1867, 1868
231923, 1924, 1925, 1926, 1927, 1928
241952, 1953, 1954, 1955, 2093, 2094
252110, 2111, 2112, 2113, 2114
262135, 2136, 2137, 2138, 2139, 2140, 2141, 2142, 2143, 2144, 2145
272164, 2165, 2166, 2167, 2168, 2169, 2170
282220, 2221, 2222, 2223, 2224, 2225
292253, 2254, 2255, 2256, 2257, 2258, 2259, 2260, 2261, 2262, 2263
302292, 2293, 2294, 2295, 2296, 2297, 2298, 2299, 2300
312369, 2370, 2371, 2372, 2373, 2374, 2375, 2376, 2377, 2378
322450, 2451, 2452, 2492, 2493, 2494, 2495, 2496
332535, 2536, 2537, 2538, 2539, 2540, 2541, 2542, 2543, 2544
342567, 2568, 2569, 2570, 2571, 2572, 2573, 2574
352616, 2617, 2618, 2619, 2620, 2621, 2622, 2623, 2624
362633, 2634, 2635, 2636, 2637, 2638, 2639, 2640, 2641, 2642, 2643, 2644, 2645
372673, 2674, 2675, 2676, 2677, 2678, 2679, 2680, 2681
382693, 2694, 2695, 2696, 2697, 2698, 2699, 2700
392724, 2725, 2726, 2727, 2728, 2729, 2730, 2731, 2732
402744, 2745, 2746, 2747, 2748, 2749
412776, 2777, 2778, 2779, 2780, 2781, 2782, 2783, 2784
422963, 2964, 2965, 2966, 2967, 2968
4368, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91

Valid loops

#loop idlocationmotif
11/1/113:123,1/1/149:158,1/1/263:267NA
21/1/2886:2889,1/1/2914:2916,1/1/2930:2936NA
31/1/3298:3300,1/1/3314:3320,1/1/3387:3390NA

Problematic loops

#loop idProblemSequence
1814, 815, 816, 817, 818, 819, 820, 905, 906, 907, 923, 924, 925, 926
2828, 829, 830, 831, 863, 864, 865, 866, 867, 892, 893, 894, 895, 896, 897
31230, 1231, 1232, 1256, 1257, 1258, 1259, 1260, 1261, 1262, 1277, 1278, 1279
41479, 1480, 1481, 1482, 1483, 1484, 1485, 1857, 1858, 1859, 1871, 1872, 1873, 1874
51488, 1489, 1490, 1491, 1837, 1838, 1839, 1840, 1841, 1842, 1843, 1852, 1853, 1854
62432, 2433, 2434, 2435, 2512, 2513, 2514, 2515, 2516, 2517, 2590, 2591, 2592, 2593, 2594, 2595, 2596, 2597
72664, 2665, 2666, 2690, 2691, 2692, 2701, 2702, 2703, 2704, 2705, 2706

Coloring options: