5GAK Internal, Hairpin and 3-way Junction Loop Motifs

152 Internal loops
84 Hairpin loops
10 Junction loops

Valid loops

#	loop id	location	motif
1	IL_5GAK_001 ➜	1/1/5:7,1/4/152:154	NA
2	IL_5GAK_002 ➜	1/1/7:8,1/4/150:152	NA
3	IL_5GAK_003 ➜	1/1/8:12,1/4/146:150	NA
4	IL_5GAK_004 ➜	1/1/12:15,1/4/144:146	NA
5	IL_5GAK_005 ➜	1/1/27:28,1/1/56:58	NA
6	IL_5GAK_006 ➜	1/1/82:89,1/1/97:103	NA
7	IL_5GAK_007 ➜	1/1/123:124,1/1/144:149	NA
8	IL_5GAK_008 ➜	1/1/125:127,1/1/141:143	NA
9	IL_5GAK_009 ➜	1/1/163:165,1/1/257:258	NA
10	IL_5GAK_010 ➜	1/1/169:170,1/1/248:253	NA
11	IL_5GAK_011 ➜	1/1/177:179,1/1/237:241	NA
12	IL_5GAK_012 ➜	1/1/333:335,1/4/28:30	NA
13	IL_5GAK_013 ➜	1/1/336:339,1/4/25:27	NA
14	IL_5GAK_014 ➜	1/1/376:379,1/1/390:403	NA
15	IL_5GAK_015 ➜	1/1/404:412,1/4/11:20	NA
16	IL_5GAK_016 ➜	1/1/413:416,1/4/7:10	NA
17	IL_5GAK_017 ➜	1/1/429:431,1/1/628:630	NA
18	IL_5GAK_019 ➜	1/1/512:513,1/1/577:579	NA
19	IL_5GAK_020 ➜	1/1/517:525,1/1/567:573	NA
20	IL_5GAK_021 ➜	1/1/531:538,1/1/553:561	NA
21	IL_5GAK_023 ➜	1/1/668:670,1/1/792:794	NA
22	IL_5GAK_024 ➜	1/1/680:684,1/1/696:700	NA
23	IL_5GAK_025 ➜	1/1/725:728,1/1/741:745	NA
24	IL_5GAK_026 ➜	1/1/752:753,1/1/779:781	NA
25	IL_5GAK_027 ➜	1/1/755:756,1/1/775:777	NA
26	IL_5GAK_029 ➜	1/1/803:805,1/1/938:940	NA
27	IL_5GAK_030 ➜	1/1/805:809,1/1/931:938	NA
28	IL_5GAK_036 ➜	1/1/954:956,1/1/965:967	NA
29	IL_5GAK_037 ➜	1/1/969:970,1/1/1111:1113	NA
30	IL_5GAK_038 ➜	1/1/977:981,1/1/1102:1104	NA
31	IL_5GAK_039 ➜	1/1/983:985,1/1/1099:1100	NA
32	IL_5GAK_049 ➜	1/1/1120:1123,1/1/1135:1138	NA
33	IL_5GAK_050 ➜	1/1/1167:1171,1/1/1328:1332	NA
34	IL_5GAK_051 ➜	1/1/1173:1180,1/1/1325:1326	NA
35	IL_5GAK_052 ➜	1/1/1180:1182,1/1/1324:1325	NA
36	IL_5GAK_053 ➜	1/1/1187:1194,1/1/1314:1319	NA
37	IL_5GAK_054 ➜	1/1/1194:1205,1/1/1299:1314	NA
38	IL_5GAK_055 ➜	1/1/1207:1209,1/1/1296:1297	NA
39	IL_5GAK_056 ➜	1/1/1217:1226,1/1/1283:1288	NA
40	IL_5GAK_059 ➜	1/1/1376:1378,1/1/1428:1431	NA
41	IL_5GAK_060 ➜	1/1/1385:1387,1/1/1420:1421	NA
42	IL_5GAK_061 ➜	1/1/1388:1396,1/1/1414:1419	NA
43	IL_5GAK_062 ➜	1/1/1398:1400,1/1/1411:1412	NA
44	IL_5GAK_063 ➜	1/1/1444:1450,1/1/2354:2359	NA
45	IL_5GAK_095 ➜	1/1/2391:2394,1/1/2986:2988	NA
46	IL_5GAK_107 ➜	1/1/2824:2826,1/1/2863:2865	NA
47	IL_5GAK_108 ➜	1/1/2826:2831,1/1/2857:2863	NA
48	IL_5GAK_109 ➜	1/1/2835:2839,1/1/2849:2853	NA
49	IL_5GAK_110 ➜	1/1/2876:2877,1/1/2949:2951	NA
50	IL_5GAK_111 ➜	1/1/2879:2881,1/1/2943:2947	NA
51	IL_5GAK_112 ➜	1/1/2881:2882,1/1/2940:2943	NA
52	IL_5GAK_113 ➜	1/1/2889:2891,1/1/2912:2914	NA
53	IL_5GAK_114 ➜	1/1/2891:2892,1/1/2909:2912	NA
54	IL_5GAK_115 ➜	1/1/2918:2920,1/1/2926:2928	NA
55	IL_5GAK_119 ➜	1/1/3004:3007,1/1/3139:3144	NA
56	IL_5GAK_120 ➜	1/1/3012:3014,1/1/3040:3042	NA
57	IL_5GAK_121 ➜	1/1/3018:3025,1/1/3030:3036	NA
58	IL_5GAK_122 ➜	1/1/3046:3051,1/1/3091:3095	NA
59	IL_5GAK_123 ➜	1/1/3054:3059,1/1/3084:3088	NA
60	IL_5GAK_124 ➜	1/1/3063:3064,1/1/3077:3080	NA
61	IL_5GAK_125 ➜	1/1/3103:3107,1/1/3127:3131	NA
62	IL_5GAK_126 ➜	1/1/3164:3166,1/1/3284:3286	NA
63	IL_5GAK_128 ➜	1/1/3177:3179,1/1/3210:3211	NA
64	IL_5GAK_129 ➜	1/1/3179:3188,1/1/3204:3210	NA
65	IL_5GAK_130 ➜	1/1/3193:3194,1/1/3197:3199	NA
66	IL_5GAK_131 ➜	1/1/3225:3229,1/1/3258:3260	NA
67	IL_5GAK_132 ➜	1/1/3233:3235,1/1/3252:3254	NA
68	IL_5GAK_133 ➜	1/1/3235:3238,1/1/3249:3252	NA
69	IL_5GAK_134 ➜	1/1/3300:3303,1/1/3311:3314	NA
70	IL_5GAK_135 ➜	1/1/3324:3325,1/1/3381:3383	NA
71	IL_5GAK_136 ➜	1/1/3328:3330,1/1/3373:3378	NA
72	IL_5GAK_137 ➜	1/1/3332:3337,1/1/3367:3371	NA
73	IL_5GAK_138 ➜	1/1/3340:3342,1/1/3363:3364	NA
74	IL_5GAK_139 ➜	1/1/3342:3345,1/1/3360:3363	NA
75	IL_5GAK_140 ➜	1/1/3349:3350,1/1/3353:3356	NA
76	IL_5GAK_141 ➜	1/3/15:16,1/3/63:65	NA
77	IL_5GAK_142 ➜	1/3/21:27,1/3/53:58	NA
78	IL_5GAK_143 ➜	1/3/28:29,1/3/49:52	NA
79	IL_5GAK_144 ➜	1/3/29:30,1/3/47:49	NA
80	IL_5GAK_145 ➜	1/3/32:36,1/3/41:45	NA
81	IL_5GAK_146 ➜	1/3/72:80,1/3/100:106	NA
82	IL_5GAK_147 ➜	1/3/84:87,1/3/94:96	NA
83	IL_5GAK_148 ➜	1/4/63:64,1/4/96:98	NA
84	IL_5GAK_149 ➜	1/4/64:66,1/4/93:96	NA
85	IL_5GAK_152 ➜	1/B/3:5,1/B/68:70	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_5GAK_018 ➜	missing nts	435, 436, 437, 438, 439, 440, 494, 495, 618, 619, 620, 621, 622, 623, 624
2	IL_5GAK_022 ➜	complementary	GAC,GUC
3	IL_5GAK_028 ➜	missing nts	758, 759, 760, 761, 762, 763, 768, 769, 770, 771, 772, 773
4	IL_5GAK_031 ➜	missing nts	833, 834, 859, 860, 861
5	IL_5GAK_032 ➜	missing nts	834, 835, 836, 837, 838, 855, 856, 857, 858, 859
6	IL_5GAK_033 ➜	missing nts	869, 870, 871, 872, 888, 889, 890
7	IL_5GAK_034 ➜	missing nts	873, 874, 875, 886, 887
8	IL_5GAK_035 ➜	missing nts	907, 908, 909, 919, 920, 921, 922, 923
9	IL_5GAK_040 ➜	missing nts	991, 992, 993, 994, 995, 996, 997, 1052, 1053, 1054, 1055, 1056, 1057, 1058
10	IL_5GAK_041 ➜	missing nts	997, 998, 1050, 1051, 1052
11	IL_5GAK_042 ➜	missing nts	999, 1000, 1001, 1002, 1003, 1004, 1046, 1047, 1048, 1049
12	IL_5GAK_043 ➜	missing nts	1006, 1007, 1008, 1009, 1041, 1042, 1043, 1044
13	IL_5GAK_044 ➜	missing nts	1009, 1010, 1011, 1039, 1040, 1041
14	IL_5GAK_045 ➜	missing nts	1013, 1014, 1015, 1016, 1017, 1018, 1034, 1035, 1036, 1037
15	IL_5GAK_046 ➜	missing nts	1018, 1019, 1020, 1032, 1033, 1034
16	IL_5GAK_047 ➜	missing nts	1069, 1070, 1071, 1087, 1088, 1089
17	IL_5GAK_048 ➜	missing nts	1074, 1075, 1076, 1083, 1084
18	IL_5GAK_057 ➜	missing nts	1234, 1235, 1236, 1237, 1238, 1250, 1251, 1252, 1253, 1254
19	IL_5GAK_058 ➜	missing nts	1262, 1263, 1264, 1265, 1266, 1275, 1276, 1277
20	IL_5GAK_064 ➜	missing nts	1500, 1501, 1502, 1503, 1504, 1505, 1513, 1514, 1515, 1516
21	IL_5GAK_065 ➜	missing nts	1532, 1533, 1534, 1535, 1536, 1585, 1586, 1587, 1588, 1589, 1590
22	IL_5GAK_066 ➜	missing nts	1560, 1561, 1562, 1563, 1577, 1578, 1579
23	IL_5GAK_067 ➜	missing nts	1563, 1564, 1565, 1574, 1575, 1576, 1577
24	IL_5GAK_068 ➜	missing nts	1618, 1619, 1620, 1621, 1824, 1825, 1826
25	IL_5GAK_069 ➜	missing nts	1623, 1624, 1625, 1626, 1627, 1816, 1817, 1818, 1819, 1820, 1821, 1822
26	IL_5GAK_070 ➜	missing nts	1627, 1628, 1629, 1630, 1631, 1811, 1812, 1813, 1814, 1815, 1816
27	IL_5GAK_071 ➜	missing nts	1645, 1646, 1647, 1648, 1649, 1806, 1807, 1808, 1809, 1810
28	IL_5GAK_072 ➜	missing nts	1661, 1662, 1663, 1786, 1787, 1788
29	IL_5GAK_073 ➜	missing nts	1669, 1670, 1778, 1779, 1780
30	IL_5GAK_074 ➜	missing nts	1670, 1671, 1776, 1777, 1778
31	IL_5GAK_075 ➜	missing nts	1694, 1695, 1696, 1697, 1698, 1747, 1748, 1749, 1750, 1751, 1752
32	IL_5GAK_076 ➜	missing nts	1702, 1703, 1704, 1705, 1706, 1707, 1737, 1738, 1739, 1740, 1741, 1742, 1743
33	IL_5GAK_077 ➜	missing nts	1711, 1712, 1713, 1714, 1715, 1716, 1717, 1727, 1728, 1729, 1730, 1731, 1732, 1733
34	IL_5GAK_078 ➜	missing nts	AGA,UCU
35	IL_5GAK_079 ➜	missing nts	1883, 1884, 1885, 1886, 1887, 1888, 1889, 2346, 2347, 2348, 2349
36	IL_5GAK_080 ➜	missing nts	1895, 1896, 1897, 2338, 2339, 2340
37	IL_5GAK_081 ➜	missing nts	1898, 1899, 1900, 1901, 1902, 1903, 1904, 1905, 1906, 2333, 2334, 2335, 2336, 2337
38	IL_5GAK_082 ➜	missing nts	1918, 1919, 1920, 1921, 1922, 1923, 1928, 1929, 1930, 1931, 1932, 1933, 1934
39	IL_5GAK_083 ➜	missing nts	1940, 1941, 1942, 2106, 2107, 2108
40	IL_5GAK_084 ➜	missing nts	1947, 1948, 2098, 2099, 2100, 2101
41	IL_5GAK_085 ➜	missing nts	AUC,GAU
42	IL_5GAK_086 ➜	missing nts	2128, 2129, 2323, 2324, 2325
43	IL_5GAK_087 ➜	missing nts	2156, 2157, 2158, 2159, 2160, 2161, 2173, 2174, 2175, 2176, 2177, 2178, 2179, 2180
44	IL_5GAK_088 ➜	missing nts	2196, 2197, 2198, 2199, 2245, 2246
45	IL_5GAK_089 ➜	missing nts	2200, 2201, 2241, 2242, 2243, 2244
46	IL_5GAK_090 ➜	missing nts	2202, 2203, 2204, 2238, 2239, 2240
47	IL_5GAK_091 ➜	missing nts	2204, 2205, 2206, 2207, 2208, 2209, 2210, 2235, 2236, 2237, 2238
48	IL_5GAK_092 ➜	missing nts	2211, 2212, 2213, 2214, 2215, 2216, 2217, 2218, 2227, 2228, 2229, 2230, 2231, 2232, 2233, 2234
49	IL_5GAK_093 ➜	missing nts	2276, 2277, 2307, 2308, 2309, 2310
50	IL_5GAK_094 ➜	missing nts	2277, 2278, 2279, 2280, 2281, 2282, 2283, 2284, 2285, 2286, 2287, 2288, 2304, 2305, 2306, 2307
51	IL_5GAK_096 ➜	missing nts	2396, 2397, 2398, 2981, 2982, 2983, 2984
52	IL_5GAK_097 ➜	missing nts	2409, 2410, 2411, 2811, 2812
53	IL_5GAK_098 ➜	missing nts	2412, 2413, 2807, 2808, 2809, 2810
54	IL_5GAK_099 ➜	missing nts	2422, 2423, 2424, 2425, 2604, 2605, 2606, 2607, 2608
55	IL_5GAK_100 ➜	missing nts	2444, 2445, 2501, 2502, 2503
56	IL_5GAK_101 ➜	missing nts	2520, 2521, 2522, 2523, 2524, 2525, 2526, 2584, 2585, 2586, 2587
57	IL_5GAK_102 ➜	missing nts	2614, 2615, 2625, 2626, 2627
58	IL_5GAK_103 ➜	missing nts	2666, 2667, 2668, 2686, 2687, 2688, 2689, 2690
59	IL_5GAK_104 ➜	missing nts	2718, 2719, 2720, 2721, 2735, 2736, 2737, 2738
60	IL_5GAK_105 ➜	missing nts	2770, 2771, 2772, 2773, 2787, 2788
61	IL_5GAK_106 ➜	missing nts	2823, 2824, 2865, 2866, 2867
62	IL_5GAK_116 ➜	missing nts	2957, 2958, 2959, 2973, 2974, 2975
63	IL_5GAK_117 ➜	missing nts	2960, 2961, 2970, 2971, 2972
64	IL_5GAK_118 ➜	missing nts	GUC,GAC
65	IL_5GAK_127 ➜	missing nts	3168, 3169, 3170, 3280, 3281, 3282
66	IL_5GAK_150 ➜	complementary	GUC,GAC
67	IL_5GAK_151 ➜	complementary	CAGG,CCUG

Valid loops

#	loop id	location	motif
1	HL_5GAK_001 ➜	1/1/31:53	NA
2	HL_5GAK_002 ➜	1/1/69:74	NA
3	HL_5GAK_003 ➜	1/1/90:96	NA
4	HL_5GAK_004 ➜	1/1/132:136	NA
5	HL_5GAK_005 ➜	1/1/194:201	NA
6	HL_5GAK_006 ➜	1/1/208:212	NA
7	HL_5GAK_007 ➜	1/1/216:224	NA
8	HL_5GAK_008 ➜	1/1/278:287	NA
9	HL_5GAK_010 ➜	1/1/357:362	NA
10	HL_5GAK_011 ➜	1/1/382:387	NA
11	HL_5GAK_012 ➜	1/1/543:548	NA
12	HL_5GAK_013 ➜	1/1/599:604	NA
13	HL_5GAK_014 ➜	1/1/640:649	NA
14	HL_5GAK_015 ➜	1/1/686:694	NA
15	HL_5GAK_016 ➜	1/1/707:712	NA
16	HL_5GAK_017 ➜	1/1/732:737	NA
17	HL_5GAK_022 ➜	1/1/958:963	NA
18	HL_5GAK_025 ➜	1/1/1126:1132	NA
19	HL_5GAK_026 ➜	1/1/1148:1155	NA
20	HL_5GAK_030 ➜	1/1/1403:1408	NA
21	HL_5GAK_062 ➜	1/1/2840:2848	NA
22	HL_5GAK_063 ➜	1/1/2897:2904	NA
23	HL_5GAK_064 ➜	1/1/2920:2926	NA
24	HL_5GAK_066 ➜	1/1/3025:3030	NA
25	HL_5GAK_067 ➜	1/1/3068:3073	NA
26	HL_5GAK_068 ➜	1/1/3110:3124	NA
27	HL_5GAK_069 ➜	1/1/3194:3197	NA
28	HL_5GAK_070 ➜	1/1/3240:3247	NA
29	HL_5GAK_071 ➜	1/1/3303:3311	NA
30	HL_5GAK_072 ➜	1/1/3350:3353	NA
31	HL_5GAK_073 ➜	1/3/36:41	NA
32	HL_5GAK_074 ➜	1/3/88:93	NA
33	HL_5GAK_075 ➜	1/4/47:56	NA
34	HL_5GAK_077 ➜	1/4/108:114	NA
35	HL_5GAK_078 ➜	1/4/124:129	NA
36	HL_5GAK_079 ➜	1/A/12:23	NA
37	HL_5GAK_080 ➜	1/A/31:39	NA
38	HL_5GAK_081 ➜	1/A/53:61	NA
39	HL_5GAK_082 ➜	1/B/13:22	NA
40	HL_5GAK_083 ➜	1/B/31:39	NA
41	HL_5GAK_084 ➜	1/B/53:61	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_5GAK_009 ➜	missing nts	303, 304, 305, 306, 307, 308, 309, 310, 311, 312
2	HL_5GAK_018 ➜	missing nts	763, 764, 765, 766, 767, 768
3	HL_5GAK_019 ➜	missing nts	844, 845, 846, 847, 848, 849
4	HL_5GAK_020 ➜	missing nts	876, 877, 878, 879, 880, 881, 882, 883, 884, 885
5	HL_5GAK_021 ➜	missing nts	910, 911, 912, 913, 914, 915, 916, 917, 918
6	HL_5GAK_023 ➜	missing nts	1023, 1024, 1025, 1026, 1027, 1028, 1029
7	HL_5GAK_024 ➜	missing nts	1076, 1077, 1078, 1079, 1080, 1081, 1082, 1083
8	HL_5GAK_027 ➜	missing nts	1239, 1240, 1241, 1242, 1243, 1244, 1245, 1246, 1247, 1248, 1249
9	HL_5GAK_028 ➜	missing nts	1266, 1267, 1268, 1269, 1270, 1271, 1272, 1273, 1274, 1275
10	HL_5GAK_029 ➜	missing nts	1347, 1348, 1349, 1350, 1351, 1352, 1353, 1354, 1355, 1356, 1357
11	HL_5GAK_031 ➜	missing nts	1462, 1463, 1464, 1465, 1466, 1467, 1468, 1469, 1470
12	HL_5GAK_032 ➜	missing nts	1506, 1507, 1508, 1509, 1510, 1511, 1512
13	HL_5GAK_033 ➜	missing nts	1544, 1545, 1546, 1547, 1548, 1549
14	HL_5GAK_034 ➜	missing nts	1565, 1566, 1567, 1568, 1569, 1570, 1571, 1572, 1573, 1574
15	HL_5GAK_035 ➜	missing nts	1599, 1600, 1601, 1602, 1603, 1604, 1605, 1606, 1607, 1608
16	HL_5GAK_036 ➜	missing nts	1634, 1635, 1636, 1637, 1638, 1639
17	HL_5GAK_037 ➜	missing nts	1680, 1681, 1682, 1683, 1684, 1685, 1686, 1687, 1688
18	HL_5GAK_038 ➜	missing nts	1719, 1720, 1721, 1722, 1723, 1724, 1725
19	HL_5GAK_039 ➜	missing nts	1759, 1760, 1761, 1762, 1763, 1764, 1765, 1766
20	HL_5GAK_040 ➜	missing nts	1792, 1793, 1794, 1795, 1796
21	HL_5GAK_041 ➜	missing nts	1844, 1845, 1846, 1847, 1848, 1849, 1850, 1851
22	HL_5GAK_042 ➜	missing nts	1862, 1863, 1864, 1865, 1866, 1867, 1868
23	HL_5GAK_043 ➜	missing nts	1923, 1924, 1925, 1926, 1927, 1928
24	HL_5GAK_044 ➜	missing nts	1952, 1953, 1954, 1955, 2093, 2094
25	HL_5GAK_045 ➜	missing nts	2110, 2111, 2112, 2113, 2114
26	HL_5GAK_046 ➜	missing nts	2135, 2136, 2137, 2138, 2139, 2140, 2141, 2142, 2143, 2144, 2145
27	HL_5GAK_047 ➜	missing nts	2164, 2165, 2166, 2167, 2168, 2169, 2170
28	HL_5GAK_048 ➜	missing nts	2220, 2221, 2222, 2223, 2224, 2225
29	HL_5GAK_049 ➜	missing nts	2253, 2254, 2255, 2256, 2257, 2258, 2259, 2260, 2261, 2262, 2263
30	HL_5GAK_050 ➜	missing nts	2292, 2293, 2294, 2295, 2296, 2297, 2298, 2299, 2300
31	HL_5GAK_051 ➜	missing nts	2369, 2370, 2371, 2372, 2373, 2374, 2375, 2376, 2377, 2378
32	HL_5GAK_052 ➜	missing nts	2450, 2451, 2452, 2492, 2493, 2494, 2495, 2496
33	HL_5GAK_053 ➜	missing nts	2535, 2536, 2537, 2538, 2539, 2540, 2541, 2542, 2543, 2544
34	HL_5GAK_054 ➜	missing nts	2567, 2568, 2569, 2570, 2571, 2572, 2573, 2574
35	HL_5GAK_055 ➜	missing nts	2616, 2617, 2618, 2619, 2620, 2621, 2622, 2623, 2624
36	HL_5GAK_056 ➜	missing nts	2633, 2634, 2635, 2636, 2637, 2638, 2639, 2640, 2641, 2642, 2643, 2644, 2645
37	HL_5GAK_057 ➜	missing nts	2673, 2674, 2675, 2676, 2677, 2678, 2679, 2680, 2681
38	HL_5GAK_058 ➜	missing nts	2693, 2694, 2695, 2696, 2697, 2698, 2699, 2700
39	HL_5GAK_059 ➜	missing nts	2724, 2725, 2726, 2727, 2728, 2729, 2730, 2731, 2732
40	HL_5GAK_060 ➜	missing nts	2744, 2745, 2746, 2747, 2748, 2749
41	HL_5GAK_061 ➜	missing nts	2776, 2777, 2778, 2779, 2780, 2781, 2782, 2783, 2784
42	HL_5GAK_065 ➜	missing nts	2963, 2964, 2965, 2966, 2967, 2968
43	HL_5GAK_076 ➜	missing nts	68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91

Valid loops

#	loop id	location	motif
1	J3_5GAK_001 ➜	1/1/113:123,1/1/149:158,1/1/263:267	NA
2	J3_5GAK_009 ➜	1/1/2886:2889,1/1/2914:2916,1/1/2930:2936	NA
3	J3_5GAK_010 ➜	1/1/3298:3300,1/1/3314:3320,1/1/3387:3390	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_5GAK_002 ➜	missing nts	814, 815, 816, 817, 818, 819, 820, 905, 906, 907, 923, 924, 925, 926
2	J3_5GAK_003 ➜	missing nts	828, 829, 830, 831, 863, 864, 865, 866, 867, 892, 893, 894, 895, 896, 897
3	J3_5GAK_004 ➜	missing nts	1230, 1231, 1232, 1256, 1257, 1258, 1259, 1260, 1261, 1262, 1277, 1278, 1279
4	J3_5GAK_005 ➜	missing nts	1479, 1480, 1481, 1482, 1483, 1484, 1485, 1857, 1858, 1859, 1871, 1872, 1873, 1874
5	J3_5GAK_006 ➜	missing nts	1488, 1489, 1490, 1491, 1837, 1838, 1839, 1840, 1841, 1842, 1843, 1852, 1853, 1854
6	J3_5GAK_007 ➜	missing nts	2432, 2433, 2434, 2435, 2512, 2513, 2514, 2515, 2516, 2517, 2590, 2591, 2592, 2593, 2594, 2595, 2596, 2597
7	J3_5GAK_008 ➜	missing nts	2664, 2665, 2666, 2690, 2691, 2692, 2701, 2702, 2703, 2704, 2705, 2706

Coloring options: Nucleotide numbers