Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5GAK_0011/1/31:53No text annotation
Not in a motif group
HL_5GAK_0021/1/69:74No text annotation
Not in a motif group
homologous
HL_8C3A_002
HL_02862.2
HL_5GAK_0031/1/90:96No text annotation
Not in a motif group
homologous
HL_8C3A_003
HL_67216.7
HL_5GAK_0041/1/132:136No text annotation
Not in a motif group
geometric
HL_4WF9_037
HL_53837.2
HL_5GAK_0051/1/194:201T-loop with 1 bulged base
Not in a motif group
homologous
HL_5TBW_005
HL_41998.1
HL_5GAK_0061/1/208:212No text annotation
Not in a motif group
homologous
HL_5TBW_006
HL_98984.4
HL_5GAK_0071/1/216:224No text annotation
Not in a motif group
homologous
HL_8C3A_007
HL_08002.9
HL_5GAK_0081/1/278:287No text annotation
Not in a motif group
homologous
HL_5TBW_008
HL_71554.2
HL_5GAK_0101/1/357:362No text annotation
Not in a motif group
homologous
HL_8C3A_010
HL_35490.2
HL_5GAK_0111/1/382:387GNRA
Not in a motif group
homologous
HL_5TBW_011
HL_35490.2
HL_5GAK_0121/1/543:548No text annotation
Not in a motif group
homologous
HL_5TBW_012
HL_86373.3
HL_5GAK_0131/1/599:604GNRA
Not in a motif group
homologous
HL_5TBW_013
HL_35490.2
HL_5GAK_0141/1/640:649No text annotation
Not in a motif group
homologous
HL_8C3A_014
HL_41998.1
HL_5GAK_0151/1/686:694No text annotation
Not in a motif group
homologous
HL_5TBW_015
HL_03345.1
HL_5GAK_0161/1/707:712GNRA
Not in a motif group
homologous
HL_5TBW_016
HL_35490.2
HL_5GAK_0171/1/732:737GNRA
Not in a motif group
homologous
HL_5TBW_017
HL_35490.2
HL_5GAK_0221/1/958:963No text annotation
Not in a motif group
homologous
HL_8C3A_022
HL_96598.1
HL_5GAK_0251/1/1126:1132GNRA
Not in a motif group
homologous
HL_5TBW_025
HL_35490.2
HL_5GAK_0261/1/1148:1155No text annotation
Not in a motif group
homologous
HL_5TBW_026
HL_64430.2
HL_5GAK_0301/1/1403:1408No text annotation
Not in a motif group
homologous
HL_8C3A_030
HL_35490.2
HL_5GAK_0621/1/2840:2848No text annotation
Not in a motif group
homologous
HL_5TBW_061
HL_06192.2
HL_5GAK_0631/1/2897:2904No text annotation
Not in a motif group
homologous
HL_5TBW_062
HL_91104.1
HL_5GAK_0641/1/2920:2926No text annotation
Not in a motif group
homologous
HL_5TBW_063
HL_43656.2
HL_5GAK_0661/1/3025:3030No text annotation
Not in a motif group
homologous
HL_8C3A_066
HL_35490.2
HL_5GAK_0671/1/3068:3073No text annotation
Not in a motif group
homologous
HL_8C3A_067
HL_46680.1
HL_5GAK_0681/1/3110:3124No text annotation
Not in a motif group
homologous
HL_8C3A_068
HL_56677.7
HL_5GAK_0691/1/3194:3197No text annotation
Not in a motif group
geometric
HL_4WF9_037
HL_53837.2
HL_5GAK_0701/1/3240:3247No text annotation
Not in a motif group
homologous
HL_5TBW_069
HL_26380.1
HL_5GAK_0711/1/3303:3311No text annotation
Not in a motif group
geometric
HL_5J7L_201
HL_64690.1
HL_5GAK_0721/1/3350:3353No text annotation
Not in a motif group
HL_5GAK_0731/3/36:41No text annotation
Not in a motif group
homologous
HL_5TBW_185
HL_87939.2
HL_5GAK_0741/3/88:93GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_35490.2
HL_5GAK_0751/4/47:56No text annotation
Not in a motif group
geometric
HL_7A0S_001
HL_99167.2
HL_5GAK_0771/4/108:114No text annotation
Not in a motif group
homologous
HL_5TBW_075
HL_53619.1
HL_5GAK_0781/4/124:129No text annotation
Not in a motif group
homologous
HL_5TBW_076
HL_96851.2
HL_5GAK_0791/A/12:23No text annotation
Not in a motif group
homologous
HL_5E6M_001
HL_82231.1
HL_5GAK_0801/A/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_5IBB_210
HL_53597.4
HL_5GAK_0811/A/53:61No text annotation
Not in a motif group
HL_5GAK_0821/B/13:22No text annotation
Not in a motif group
homologous
HL_4YYE_001
NA
HL_5GAK_0831/B/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_6UFG_007
HL_53597.4
HL_5GAK_0841/B/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4V8N_145
HL_22280.4

Problematic loops

#loop idProblemSequence
HL_5GAK_009No text annotation
HL_5GAK_018No text annotation
HL_5GAK_019GNRA
HL_5GAK_020No text annotation
HL_5GAK_021No text annotation
HL_5GAK_023GNRA
HL_5GAK_024No text annotation
HL_5GAK_027No text annotation
HL_5GAK_028No text annotation
HL_5GAK_029No text annotation
HL_5GAK_031No text annotation
HL_5GAK_032No text annotation
HL_5GAK_033No text annotation
HL_5GAK_034No text annotation
HL_5GAK_035No text annotation
HL_5GAK_036GNRA
HL_5GAK_037No text annotation
HL_5GAK_038No text annotation
HL_5GAK_039No text annotation
HL_5GAK_040No text annotation
HL_5GAK_041No text annotation
HL_5GAK_042GNRA with one bulged base
HL_5GAK_043UNCG
HL_5GAK_044No text annotation
HL_5GAK_045No text annotation
HL_5GAK_046No text annotation
HL_5GAK_047No text annotation
HL_5GAK_048Other HL
HL_5GAK_049No text annotation
HL_5GAK_050No text annotation
HL_5GAK_051No text annotation
HL_5GAK_052No text annotation
HL_5GAK_053No text annotation
HL_5GAK_054No text annotation
HL_5GAK_055No text annotation
HL_5GAK_056No text annotation
HL_5GAK_057No text annotation
HL_5GAK_058No text annotation
HL_5GAK_059No text annotation
HL_5GAK_060No text annotation
HL_5GAK_061No text annotation
HL_5GAK_065GNRA
HL_5GAK_076No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5GAK_0011/1/5:7,
1/4/152:154
Isolated cWH basepair
Not in a motif group
geometric
IL_3R1C_017
IL_70707.2
IL_5GAK_0021/1/7:8,
1/4/150:152
No text annotation
Not in a motif group
homologous
IL_8C3A_002
IL_61258.12
IL_5GAK_0031/1/8:12,
1/4/146:150
No text annotation
Not in a motif group
geometric
IL_5TBW_121
IL_05145.2
IL_5GAK_0041/1/12:15,
1/4/144:146
No text annotation
Not in a motif group
geometric
IL_4V9F_105
IL_86319.2
IL_5GAK_0051/1/27:28,
1/1/56:58
No text annotation
Not in a motif group
homologous
IL_8C3A_004
IL_76488.4
IL_5GAK_0061/1/82:89,
1/1/97:103
No text annotation
Not in a motif group
homologous
IL_5TBW_006
IL_88613.1
IL_5GAK_0071/1/123:124,
1/1/144:149
No text annotation
Not in a motif group
homologous
IL_5TBW_007
IL_19724.2
IL_5GAK_0081/1/125:127,
1/1/141:143
No text annotation
Not in a motif group
homologous
IL_8C3A_008
IL_86319.2
IL_5GAK_0091/1/163:165,
1/1/257:258
Single stack bend
Not in a motif group
homologous
IL_5TBW_009
IL_76488.4
IL_5GAK_0101/1/169:170,
1/1/248:253
No text annotation
Not in a motif group
homologous
IL_5TBW_010
IL_74684.1
IL_5GAK_0111/1/177:179,
1/1/237:241
Major groove platform with extra pair
Not in a motif group
homologous
IL_5TBW_011
IL_63450.2
IL_5GAK_0121/1/333:335,
1/4/28:30
No text annotation
Not in a motif group
geometric
IL_3ICQ_003
IL_70707.2
IL_5GAK_0131/1/336:339,
1/4/25:27
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_3TD0_005
IL_43275.1
IL_5GAK_0141/1/376:379,
1/1/390:403
No text annotation
Not in a motif group
homologous
IL_5TBW_014
IL_60992.6
IL_5GAK_0151/1/404:412,
1/4/11:20
No text annotation
Not in a motif group
IL_5GAK_0161/1/413:416,
1/4/7:10
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6CZR_168
IL_67743.1
IL_5GAK_0171/1/429:431,
1/1/628:630
No text annotation
Not in a motif group
homologous
IL_5TBW_016
IL_70707.2
IL_5GAK_0191/1/512:513,
1/1/577:579
No text annotation
Not in a motif group
homologous
IL_8C3A_020
IL_37497.6
IL_5GAK_0201/1/517:525,
1/1/567:573
No text annotation
Not in a motif group
homologous
IL_5TBW_019
IL_23992.1
IL_5GAK_0211/1/531:538,
1/1/553:561
No text annotation
Not in a motif group
homologous
IL_5TBW_020
IL_07703.1
IL_5GAK_0231/1/668:670,
1/1/792:794
No text annotation
Not in a motif group
homologous
IL_8C3A_023
IL_86319.2
IL_5GAK_0241/1/680:684,
1/1/696:700
No text annotation
Not in a motif group
homologous
IL_5TBW_022
IL_74284.1
IL_5GAK_0251/1/725:728,
1/1/741:745
UAA/GAN
Not in a motif group
homologous
IL_5TBW_023
IL_07235.1
IL_5GAK_0261/1/752:753,
1/1/779:781
Single bulged A
Not in a motif group
homologous
IL_5TBW_024
IL_37497.6
IL_5GAK_0271/1/755:756,
1/1/775:777
Single bulged U
Not in a motif group
homologous
IL_5TBW_025
IL_83039.16
IL_5GAK_0291/1/803:805,
1/1/938:940
No text annotation
Not in a motif group
homologous
IL_8C3A_029
IL_86319.2
IL_5GAK_0301/1/805:809,
1/1/931:938
No text annotation
Not in a motif group
geometric
IL_5TBW_028
IL_17470.6
IL_5GAK_0361/1/954:956,
1/1/965:967
No text annotation
Not in a motif group
homologous
IL_8C3A_037
IL_86319.2
IL_5GAK_0371/1/969:970,
1/1/1111:1113
No text annotation
Not in a motif group
homologous
IL_8C3A_038
IL_76488.4
IL_5GAK_0381/1/977:981,
1/1/1102:1104
No text annotation
Not in a motif group
homologous
IL_5TBW_036
IL_67474.4
IL_5GAK_0391/1/983:985,
1/1/1099:1100
No text annotation
Not in a motif group
IL_5GAK_0491/1/1120:1123,
1/1/1135:1138
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_255D_001
IL_90802.1
IL_5GAK_0501/1/1167:1171,
1/1/1328:1332
No text annotation
Not in a motif group
homologous
IL_8C3A_051
IL_89002.2
IL_5GAK_0511/1/1173:1180,
1/1/1325:1326
No text annotation
Not in a motif group
homologous
IL_8C3A_052
IL_15861.7
IL_5GAK_0521/1/1180:1182,
1/1/1324:1325
Single bulged U
Not in a motif group
geometric
IL_7A0S_035
IL_83039.16
IL_5GAK_0531/1/1187:1194,
1/1/1314:1319
No text annotation
Not in a motif group
homologous
IL_5TBW_051
IL_27086.1
IL_5GAK_0541/1/1194:1205,
1/1/1299:1314
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_5GAK_0551/1/1207:1209,
1/1/1296:1297
No text annotation
Not in a motif group
homologous
IL_8C3A_056
IL_83039.16
IL_5GAK_0561/1/1217:1226,
1/1/1283:1288
No text annotation
Not in a motif group
IL_5GAK_0591/1/1376:1378,
1/1/1428:1431
No text annotation
Not in a motif group
homologous
IL_8C3A_061
IL_52767.4
IL_5GAK_0601/1/1385:1387,
1/1/1420:1421
No text annotation
Not in a motif group
homologous
IL_8C3A_062
IL_37497.6
IL_5GAK_0611/1/1388:1396,
1/1/1414:1419
No text annotation
Not in a motif group
IL_5GAK_0621/1/1398:1400,
1/1/1411:1412
Single bulged A
Not in a motif group
homologous
IL_5TBW_060
IL_37497.6
IL_5GAK_0631/1/1444:1450,
1/1/2354:2359
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_061
IL_76042.2
IL_5GAK_0951/1/2391:2394,
1/1/2986:2988
No text annotation
Not in a motif group
homologous
IL_8C3A_096
IL_63450.2
IL_5GAK_1071/1/2824:2826,
1/1/2863:2865
No text annotation
Not in a motif group
geometric
IL_5TBW_021
IL_86319.2
IL_5GAK_1081/1/2826:2831,
1/1/2857:2863
No text annotation
Not in a motif group
IL_5GAK_1091/1/2835:2839,
1/1/2849:2853
No text annotation
Not in a motif group
homologous
IL_8C3A_114
NA
IL_5GAK_1101/1/2876:2877,
1/1/2949:2951
Major groove platform
Not in a motif group
homologous
IL_5TBW_107
IL_76223.2
IL_5GAK_1111/1/2879:2881,
1/1/2943:2947
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5TBW_108
IL_90933.2
IL_5GAK_1121/1/2881:2882,
1/1/2940:2943
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_109
IL_71530.2
IL_5GAK_1131/1/2889:2891,
1/1/2912:2914
No text annotation
Not in a motif group
homologous
IL_8C3A_118
IL_86319.2
IL_5GAK_1141/1/2891:2892,
1/1/2909:2912
Minor groove platform with intercalation
Not in a motif group
geometric
IL_5TBW_111
IL_95601.3
IL_5GAK_1151/1/2918:2920,
1/1/2926:2928
No text annotation
Not in a motif group
geometric
IL_5TBW_127
IL_86319.2
IL_5GAK_1191/1/3004:3007,
1/1/3139:3144
No text annotation
Not in a motif group
homologous
IL_8C3A_123
IL_09705.10
IL_5GAK_1201/1/3012:3014,
1/1/3040:3042
No text annotation
Not in a motif group
homologous
IL_8C3A_124
IL_86319.2
IL_5GAK_1211/1/3018:3025,
1/1/3030:3036
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5TBW_116
IL_04346.7
IL_5GAK_1221/1/3046:3051,
1/1/3091:3095
No text annotation
Not in a motif group
geometric
IL_5TBW_062
IL_93630.2
IL_5GAK_1231/1/3054:3059,
1/1/3084:3088
No text annotation
Not in a motif group
homologous
IL_8C3A_127
IL_17136.1
IL_5GAK_1241/1/3063:3064,
1/1/3077:3080
No text annotation
Not in a motif group
homologous
IL_8C3A_128
IL_71530.2
IL_5GAK_1251/1/3103:3107,
1/1/3127:3131
No text annotation
Not in a motif group
homologous
IL_8C3A_129
IL_89002.2
IL_5GAK_1261/1/3164:3166,
1/1/3284:3286
No text annotation
Not in a motif group
homologous
IL_8C3A_130
IL_86319.2
IL_5GAK_1281/1/3177:3179,
1/1/3210:3211
Single bulged A
Not in a motif group
homologous
IL_5TBW_123
IL_37497.6
IL_5GAK_1291/1/3179:3188,
1/1/3204:3210
No text annotation
Not in a motif group
geometric
IL_5TBW_124
IL_15174.1
IL_5GAK_1301/1/3193:3194,
1/1/3197:3199
Single bulged U
Not in a motif group
geometric
IL_5TBW_125
IL_83039.16
IL_5GAK_1311/1/3225:3229,
1/1/3258:3260
No text annotation
Not in a motif group
homologous
IL_5TBW_126
IL_19389.6
IL_5GAK_1321/1/3233:3235,
1/1/3252:3254
No text annotation
Not in a motif group
geometric
IL_7A0S_031
IL_86319.2
IL_5GAK_1331/1/3235:3238,
1/1/3249:3252
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_128
IL_30621.4
IL_5GAK_1341/1/3300:3303,
1/1/3311:3314
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_129
IL_30621.4
IL_5GAK_1351/1/3324:3325,
1/1/3381:3383
Single bulged U
Not in a motif group
homologous
IL_5TBW_131
IL_83039.16
IL_5GAK_1361/1/3328:3330,
1/1/3373:3378
No text annotation
Not in a motif group
homologous
IL_8C3A_138
IL_90933.2
IL_5GAK_1371/1/3332:3337,
1/1/3367:3371
No text annotation
Not in a motif group
homologous
IL_5TBW_133
IL_83162.5
IL_5GAK_1381/1/3340:3342,
1/1/3363:3364
Single bulged U
Not in a motif group
geometric
IL_3TZR_002
IL_83039.16
IL_5GAK_1391/1/3342:3345,
1/1/3360:3363
No text annotation
Not in a motif group
homologous
IL_8C3A_141
IL_09705.10
IL_5GAK_1401/1/3349:3350,
1/1/3353:3356
No text annotation
Not in a motif group
IL_5GAK_1411/3/15:16,
1/3/63:65
Single bulged A
Not in a motif group
homologous
IL_5TBW_372
IL_37497.6
IL_5GAK_1421/3/21:27,
1/3/53:58
No text annotation
Not in a motif group
homologous
IL_5TBW_373
IL_10207.2
IL_5GAK_1431/3/28:29,
1/3/49:52
Minor groove platform
Not in a motif group
homologous
IL_5TBW_374
IL_63797.2
IL_5GAK_1441/3/29:30,
1/3/47:49
Single stack bend
Not in a motif group
geometric
IL_4V9F_081
IL_76488.4
IL_5GAK_1451/3/32:36,
1/3/41:45
Symmetric double minor groove platform
Not in a motif group
geometric
IL_5TBW_376
IL_58103.6
IL_5GAK_1461/3/72:80,
1/3/100:106
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_377
IL_04346.7
IL_5GAK_1471/3/84:87,
1/3/94:96
No text annotation
Not in a motif group
homologous
IL_5TBW_378
IL_86319.2
IL_5GAK_1481/4/63:64,
1/4/96:98
Single base bend
Not in a motif group
geometric
IL_5IBB_340
IL_92001.1
IL_5GAK_1491/4/64:66,
1/4/93:96
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5TBW_145
IL_43275.1
IL_5GAK_1521/B/3:5,
1/B/68:70
No text annotation
Not in a motif group
homologous
IL_4WSM_380
NA

Problematic loops

#loop idProblemSequence
IL_5GAK_018No text annotation
IL_5GAK_022No text annotation
IL_5GAK_028No text annotation
IL_5GAK_031Single bulged G
IL_5GAK_032No text annotation
IL_5GAK_033Major groove platform with extra cWW
IL_5GAK_034No text annotation
IL_5GAK_035Multiple bulged bases
IL_5GAK_0407x7 Sarcin-Ricin with intercalated A; G-bulge
IL_5GAK_041No text annotation
IL_5GAK_042No text annotation
IL_5GAK_043Tandem non-canonical cWW pairs
IL_5GAK_044No text annotation
IL_5GAK_045Other IL
IL_5GAK_046No text annotation
IL_5GAK_047No text annotation
IL_5GAK_048No text annotation
IL_5GAK_057No text annotation
IL_5GAK_058No text annotation
IL_5GAK_064No text annotation
IL_5GAK_065UAA/GAN
IL_5GAK_066No text annotation
IL_5GAK_067No text annotation
IL_5GAK_068No text annotation
IL_5GAK_069No text annotation
IL_5GAK_070No text annotation
IL_5GAK_071No text annotation
IL_5GAK_072No text annotation
IL_5GAK_073Single bulged C
IL_5GAK_074No text annotation
IL_5GAK_075No text annotation
IL_5GAK_076No text annotation
IL_5GAK_077Kink-turn
IL_5GAK_078CC cWW
IL_5GAK_079No text annotation
IL_5GAK_080No text annotation
IL_5GAK_081No text annotation
IL_5GAK_082No text annotation
IL_5GAK_083No text annotation
IL_5GAK_084No text annotation
IL_5GAK_085CC cWW
IL_5GAK_086Single bulged A
IL_5GAK_087Kink-turn related
IL_5GAK_088No text annotation
IL_5GAK_089Major groove outside cWW, minor groove, intercalation pocket
IL_5GAK_090No text annotation
IL_5GAK_091No text annotation
IL_5GAK_092No text annotation
IL_5GAK_093Multiple bulged bases
IL_5GAK_094No text annotation
IL_5GAK_096No text annotation
IL_5GAK_097Single bulged U
IL_5GAK_098Minor groove platform
IL_5GAK_099Double sheared
IL_5GAK_100Single stack bend
IL_5GAK_101No text annotation
IL_5GAK_102Single bulged A
IL_5GAK_103No text annotation
IL_5GAK_104No text annotation
IL_5GAK_105No text annotation
IL_5GAK_106Major groove platform
IL_5GAK_116No text annotation
IL_5GAK_117No text annotation
IL_5GAK_118No text annotation
IL_5GAK_127No text annotation
IL_5GAK_150No text annotation
IL_5GAK_151No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5GAK_0011/1/113:123,
1/1/149:158,
1/1/263:267
No text annotation
Not in a motif group
J3_5GAK_0091/1/2886:2889,
1/1/2914:2916,
1/1/2930:2936
No text annotation
Not in a motif group
homologous
J3_8C3A_011
NA
J3_5GAK_0101/1/3298:3300,
1/1/3314:3320,
1/1/3387:3390
No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
J3_5GAK_002No text annotation
J3_5GAK_003No text annotation
J3_5GAK_004No text annotation
J3_5GAK_005No text annotation
J3_5GAK_006No text annotation
J3_5GAK_007No text annotation
J3_5GAK_008No text annotation

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