5GAK | Motifs

Valid loops

#	loop id	location	annotation	motif
1	HL_5GAK_001 ➜	1/1/31:53	NA	NA
2	HL_5GAK_002 ➜	1/1/69:74	NA	NA
3	HL_5GAK_003 ➜	1/1/90:96	NA	NA
4	HL_5GAK_004 ➜	1/1/132:136	NA	NA
5	HL_5GAK_005 ➜	1/1/194:201	NA	NA
6	HL_5GAK_006 ➜	1/1/208:212	NA	NA
7	HL_5GAK_007 ➜	1/1/216:224	NA	NA
8	HL_5GAK_008 ➜	1/1/278:287	NA	NA
9	HL_5GAK_010 ➜	1/1/357:362	NA	NA
10	HL_5GAK_011 ➜	1/1/382:387	NA	NA
11	HL_5GAK_012 ➜	1/1/543:548	NA	NA
12	HL_5GAK_013 ➜	1/1/599:604	NA	NA
13	HL_5GAK_014 ➜	1/1/640:649	NA	NA
14	HL_5GAK_015 ➜	1/1/686:694	NA	NA
15	HL_5GAK_016 ➜	1/1/707:712	NA	NA
16	HL_5GAK_017 ➜	1/1/732:737	NA	NA
17	HL_5GAK_022 ➜	1/1/958:963	NA	NA
18	HL_5GAK_025 ➜	1/1/1126:1132	NA	NA
19	HL_5GAK_026 ➜	1/1/1148:1155	NA	NA
20	HL_5GAK_030 ➜	1/1/1403:1408	NA	NA
21	HL_5GAK_062 ➜	1/1/2840:2848	NA	NA
22	HL_5GAK_063 ➜	1/1/2897:2904	NA	NA
23	HL_5GAK_064 ➜	1/1/2920:2926	NA	NA
24	HL_5GAK_066 ➜	1/1/3025:3030	NA	NA
25	HL_5GAK_067 ➜	1/1/3068:3073	NA	NA
26	HL_5GAK_068 ➜	1/1/3110:3124	NA	NA
27	HL_5GAK_069 ➜	1/1/3194:3197	NA	NA
28	HL_5GAK_070 ➜	1/1/3240:3247	NA	NA
29	HL_5GAK_071 ➜	1/1/3303:3311	NA	NA
30	HL_5GAK_072 ➜	1/1/3350:3353	NA	NA
31	HL_5GAK_073 ➜	1/3/36:41	NA	NA
32	HL_5GAK_074 ➜	1/3/88:93	NA	NA
33	HL_5GAK_075 ➜	1/4/47:56	NA	NA
34	HL_5GAK_077 ➜	1/4/108:114	NA	NA
35	HL_5GAK_078 ➜	1/4/124:129	NA	NA
36	HL_5GAK_079 ➜	1/A/12:23	NA	NA
37	HL_5GAK_080 ➜	1/A/31:39	NA	NA
38	HL_5GAK_081 ➜	1/A/53:61	NA	NA
39	HL_5GAK_082 ➜	1/B/13:22	NA	NA
40	HL_5GAK_083 ➜	1/B/31:39	NA	NA
41	HL_5GAK_084 ➜	1/B/53:61	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_5GAK_009 ➜	missing nts	NA
2	HL_5GAK_018 ➜	missing nts	NA
3	HL_5GAK_019 ➜	missing nts	NA
4	HL_5GAK_020 ➜	missing nts	NA
5	HL_5GAK_021 ➜	missing nts	NA
6	HL_5GAK_023 ➜	missing nts	NA
7	HL_5GAK_024 ➜	missing nts	NA
8	HL_5GAK_027 ➜	missing nts	NA
9	HL_5GAK_028 ➜	missing nts	NA
10	HL_5GAK_029 ➜	missing nts	NA
11	HL_5GAK_031 ➜	missing nts	NA
12	HL_5GAK_032 ➜	missing nts	NA
13	HL_5GAK_033 ➜	missing nts	NA
14	HL_5GAK_034 ➜	missing nts	NA
15	HL_5GAK_035 ➜	missing nts	NA
16	HL_5GAK_036 ➜	missing nts	NA
17	HL_5GAK_037 ➜	missing nts	NA
18	HL_5GAK_038 ➜	missing nts	NA
19	HL_5GAK_039 ➜	missing nts	NA
20	HL_5GAK_040 ➜	missing nts	NA
21	HL_5GAK_041 ➜	missing nts	NA
22	HL_5GAK_042 ➜	missing nts	NA
23	HL_5GAK_043 ➜	missing nts	NA
24	HL_5GAK_044 ➜	missing nts	NA
25	HL_5GAK_045 ➜	missing nts	NA
26	HL_5GAK_046 ➜	missing nts	NA
27	HL_5GAK_047 ➜	missing nts	NA
28	HL_5GAK_048 ➜	missing nts	NA
29	HL_5GAK_049 ➜	missing nts	NA
30	HL_5GAK_050 ➜	missing nts	NA
31	HL_5GAK_051 ➜	missing nts	NA
32	HL_5GAK_052 ➜	missing nts	NA
33	HL_5GAK_053 ➜	missing nts	NA
34	HL_5GAK_054 ➜	missing nts	NA
35	HL_5GAK_055 ➜	missing nts	NA
36	HL_5GAK_056 ➜	missing nts	NA
37	HL_5GAK_057 ➜	missing nts	NA
38	HL_5GAK_058 ➜	missing nts	NA
39	HL_5GAK_059 ➜	missing nts	NA
40	HL_5GAK_060 ➜	missing nts	NA
41	HL_5GAK_061 ➜	missing nts	NA
42	HL_5GAK_065 ➜	missing nts	NA
43	HL_5GAK_076 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_5GAK_001 ➜	1/1/5:7,1/4/152:154	NA	NA
2	IL_5GAK_002 ➜	1/1/7:8,1/4/150:152	NA	NA
3	IL_5GAK_003 ➜	1/1/8:12,1/4/146:150	NA	NA
4	IL_5GAK_004 ➜	1/1/12:15,1/4/144:146	NA	NA
5	IL_5GAK_005 ➜	1/1/27:28,1/1/56:58	NA	NA
6	IL_5GAK_006 ➜	1/1/82:89,1/1/97:103	NA	NA
7	IL_5GAK_007 ➜	1/1/123:124,1/1/144:149	NA	NA
8	IL_5GAK_008 ➜	1/1/125:127,1/1/141:143	NA	NA
9	IL_5GAK_009 ➜	1/1/163:165,1/1/257:258	NA	NA
10	IL_5GAK_010 ➜	1/1/169:170,1/1/248:253	NA	NA
11	IL_5GAK_011 ➜	1/1/177:179,1/1/237:241	NA	NA
12	IL_5GAK_012 ➜	1/1/333:335,1/4/28:30	NA	NA
13	IL_5GAK_013 ➜	1/1/336:339,1/4/25:27	NA	NA
14	IL_5GAK_014 ➜	1/1/376:379,1/1/390:403	NA	NA
15	IL_5GAK_015 ➜	1/1/404:412,1/4/11:20	NA	NA
16	IL_5GAK_016 ➜	1/1/413:416,1/4/7:10	NA	NA
17	IL_5GAK_017 ➜	1/1/429:431,1/1/628:630	NA	NA
18	IL_5GAK_019 ➜	1/1/512:513,1/1/577:579	NA	NA
19	IL_5GAK_020 ➜	1/1/517:525,1/1/567:573	NA	NA
20	IL_5GAK_021 ➜	1/1/531:538,1/1/553:561	NA	NA
21	IL_5GAK_023 ➜	1/1/668:670,1/1/792:794	NA	NA
22	IL_5GAK_024 ➜	1/1/680:684,1/1/696:700	NA	NA
23	IL_5GAK_025 ➜	1/1/725:728,1/1/741:745	NA	NA
24	IL_5GAK_026 ➜	1/1/752:753,1/1/779:781	NA	NA
25	IL_5GAK_027 ➜	1/1/755:756,1/1/775:777	NA	NA
26	IL_5GAK_029 ➜	1/1/803:805,1/1/938:940	NA	NA
27	IL_5GAK_030 ➜	1/1/805:809,1/1/931:938	NA	NA
28	IL_5GAK_036 ➜	1/1/954:956,1/1/965:967	NA	NA
29	IL_5GAK_037 ➜	1/1/969:970,1/1/1111:1113	NA	NA
30	IL_5GAK_038 ➜	1/1/977:981,1/1/1102:1104	NA	NA
31	IL_5GAK_039 ➜	1/1/983:985,1/1/1099:1100	NA	NA
32	IL_5GAK_049 ➜	1/1/1120:1123,1/1/1135:1138	NA	NA
33	IL_5GAK_050 ➜	1/1/1167:1171,1/1/1328:1332	NA	NA
34	IL_5GAK_051 ➜	1/1/1173:1180,1/1/1325:1326	NA	NA
35	IL_5GAK_052 ➜	1/1/1180:1182,1/1/1324:1325	NA	NA
36	IL_5GAK_053 ➜	1/1/1187:1194,1/1/1314:1319	NA	NA
37	IL_5GAK_054 ➜	1/1/1194:1205,1/1/1299:1314	NA	NA
38	IL_5GAK_055 ➜	1/1/1207:1209,1/1/1296:1297	NA	NA
39	IL_5GAK_056 ➜	1/1/1217:1226,1/1/1283:1288	NA	NA
40	IL_5GAK_059 ➜	1/1/1376:1378,1/1/1428:1431	NA	NA
41	IL_5GAK_060 ➜	1/1/1385:1387,1/1/1420:1421	NA	NA
42	IL_5GAK_061 ➜	1/1/1388:1396,1/1/1414:1419	NA	NA
43	IL_5GAK_062 ➜	1/1/1398:1400,1/1/1411:1412	NA	NA
44	IL_5GAK_063 ➜	1/1/1444:1450,1/1/2354:2359	NA	NA
45	IL_5GAK_095 ➜	1/1/2391:2394,1/1/2986:2988	NA	NA
46	IL_5GAK_107 ➜	1/1/2824:2826,1/1/2863:2865	NA	NA
47	IL_5GAK_108 ➜	1/1/2826:2831,1/1/2857:2863	NA	NA
48	IL_5GAK_109 ➜	1/1/2835:2839,1/1/2849:2853	NA	NA
49	IL_5GAK_110 ➜	1/1/2876:2877,1/1/2949:2951	NA	NA
50	IL_5GAK_111 ➜	1/1/2879:2881,1/1/2943:2947	NA	NA
51	IL_5GAK_112 ➜	1/1/2881:2882,1/1/2940:2943	NA	NA
52	IL_5GAK_113 ➜	1/1/2889:2891,1/1/2912:2914	NA	NA
53	IL_5GAK_114 ➜	1/1/2891:2892,1/1/2909:2912	NA	NA
54	IL_5GAK_115 ➜	1/1/2918:2920,1/1/2926:2928	NA	NA
55	IL_5GAK_119 ➜	1/1/3004:3007,1/1/3139:3144	NA	NA
56	IL_5GAK_120 ➜	1/1/3012:3014,1/1/3040:3042	NA	NA
57	IL_5GAK_121 ➜	1/1/3018:3025,1/1/3030:3036	NA	NA
58	IL_5GAK_122 ➜	1/1/3046:3051,1/1/3091:3095	NA	NA
59	IL_5GAK_123 ➜	1/1/3054:3059,1/1/3084:3088	NA	NA
60	IL_5GAK_124 ➜	1/1/3063:3064,1/1/3077:3080	NA	NA
61	IL_5GAK_125 ➜	1/1/3103:3107,1/1/3127:3131	NA	NA
62	IL_5GAK_126 ➜	1/1/3164:3166,1/1/3284:3286	NA	NA
63	IL_5GAK_128 ➜	1/1/3177:3179,1/1/3210:3211	NA	NA
64	IL_5GAK_129 ➜	1/1/3179:3188,1/1/3204:3210	NA	NA
65	IL_5GAK_130 ➜	1/1/3193:3194,1/1/3197:3199	NA	NA
66	IL_5GAK_131 ➜	1/1/3225:3229,1/1/3258:3260	NA	NA
67	IL_5GAK_132 ➜	1/1/3233:3235,1/1/3252:3254	NA	NA
68	IL_5GAK_133 ➜	1/1/3235:3238,1/1/3249:3252	NA	NA
69	IL_5GAK_134 ➜	1/1/3300:3303,1/1/3311:3314	NA	NA
70	IL_5GAK_135 ➜	1/1/3324:3325,1/1/3381:3383	NA	NA
71	IL_5GAK_136 ➜	1/1/3328:3330,1/1/3373:3378	NA	NA
72	IL_5GAK_137 ➜	1/1/3332:3337,1/1/3367:3371	NA	NA
73	IL_5GAK_138 ➜	1/1/3340:3342,1/1/3363:3364	NA	NA
74	IL_5GAK_139 ➜	1/1/3342:3345,1/1/3360:3363	NA	NA
75	IL_5GAK_140 ➜	1/1/3349:3350,1/1/3353:3356	NA	NA
76	IL_5GAK_141 ➜	1/3/15:16,1/3/63:65	NA	NA
77	IL_5GAK_142 ➜	1/3/21:27,1/3/53:58	NA	NA
78	IL_5GAK_143 ➜	1/3/28:29,1/3/49:52	NA	NA
79	IL_5GAK_144 ➜	1/3/29:30,1/3/47:49	NA	NA
80	IL_5GAK_145 ➜	1/3/32:36,1/3/41:45	NA	NA
81	IL_5GAK_146 ➜	1/3/72:80,1/3/100:106	NA	NA
82	IL_5GAK_147 ➜	1/3/84:87,1/3/94:96	NA	NA
83	IL_5GAK_148 ➜	1/4/63:64,1/4/96:98	NA	NA
84	IL_5GAK_149 ➜	1/4/64:66,1/4/93:96	NA	NA
85	IL_5GAK_152 ➜	1/B/3:5,1/B/68:70	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_5GAK_018 ➜	missing nts	NA
2	IL_5GAK_022 ➜	complementary	NA
3	IL_5GAK_028 ➜	missing nts	NA
4	IL_5GAK_031 ➜	missing nts	NA
5	IL_5GAK_032 ➜	missing nts	NA
6	IL_5GAK_033 ➜	missing nts	NA
7	IL_5GAK_034 ➜	missing nts	NA
8	IL_5GAK_035 ➜	missing nts	NA
9	IL_5GAK_040 ➜	missing nts	NA
10	IL_5GAK_041 ➜	missing nts	NA
11	IL_5GAK_042 ➜	missing nts	NA
12	IL_5GAK_043 ➜	missing nts	NA
13	IL_5GAK_044 ➜	missing nts	NA
14	IL_5GAK_045 ➜	missing nts	NA
15	IL_5GAK_046 ➜	missing nts	NA
16	IL_5GAK_047 ➜	missing nts	NA
17	IL_5GAK_048 ➜	missing nts	NA
18	IL_5GAK_057 ➜	missing nts	NA
19	IL_5GAK_058 ➜	missing nts	NA
20	IL_5GAK_064 ➜	missing nts	NA
21	IL_5GAK_065 ➜	missing nts	NA
22	IL_5GAK_066 ➜	missing nts	NA
23	IL_5GAK_067 ➜	missing nts	NA
24	IL_5GAK_068 ➜	missing nts	NA
25	IL_5GAK_069 ➜	missing nts	NA
26	IL_5GAK_070 ➜	missing nts	NA
27	IL_5GAK_071 ➜	missing nts	NA
28	IL_5GAK_072 ➜	missing nts	NA
29	IL_5GAK_073 ➜	missing nts	NA
30	IL_5GAK_074 ➜	missing nts	NA
31	IL_5GAK_075 ➜	missing nts	NA
32	IL_5GAK_076 ➜	missing nts	NA
33	IL_5GAK_077 ➜	missing nts	NA
34	IL_5GAK_078 ➜	missing nts	NA
35	IL_5GAK_079 ➜	missing nts	NA
36	IL_5GAK_080 ➜	missing nts	NA
37	IL_5GAK_081 ➜	missing nts	NA
38	IL_5GAK_082 ➜	missing nts	NA
39	IL_5GAK_083 ➜	missing nts	NA
40	IL_5GAK_084 ➜	missing nts	NA
41	IL_5GAK_085 ➜	missing nts	NA
42	IL_5GAK_086 ➜	missing nts	NA
43	IL_5GAK_087 ➜	missing nts	NA
44	IL_5GAK_088 ➜	missing nts	NA
45	IL_5GAK_089 ➜	missing nts	NA
46	IL_5GAK_090 ➜	missing nts	NA
47	IL_5GAK_091 ➜	missing nts	NA
48	IL_5GAK_092 ➜	missing nts	NA
49	IL_5GAK_093 ➜	missing nts	NA
50	IL_5GAK_094 ➜	missing nts	NA
51	IL_5GAK_096 ➜	missing nts	NA
52	IL_5GAK_097 ➜	missing nts	NA
53	IL_5GAK_098 ➜	missing nts	NA
54	IL_5GAK_099 ➜	missing nts	NA
55	IL_5GAK_100 ➜	missing nts	NA
56	IL_5GAK_101 ➜	missing nts	NA
57	IL_5GAK_102 ➜	missing nts	NA
58	IL_5GAK_103 ➜	missing nts	NA
59	IL_5GAK_104 ➜	missing nts	NA
60	IL_5GAK_105 ➜	missing nts	NA
61	IL_5GAK_106 ➜	missing nts	NA
62	IL_5GAK_116 ➜	missing nts	NA
63	IL_5GAK_117 ➜	missing nts	NA
64	IL_5GAK_118 ➜	missing nts	NA
65	IL_5GAK_127 ➜	missing nts	NA
66	IL_5GAK_150 ➜	complementary	NA
67	IL_5GAK_151 ➜	complementary	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_5GAK_001 ➜	1/1/113:123,1/1/149:158,1/1/263:267	NA	NA
2	J3_5GAK_009 ➜	1/1/2886:2889,1/1/2914:2916,1/1/2930:2936	NA	NA
3	J3_5GAK_010 ➜	1/1/3298:3300,1/1/3314:3320,1/1/3387:3390	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_5GAK_002 ➜	missing nts	NA
2	J3_5GAK_003 ➜	missing nts	NA
3	J3_5GAK_004 ➜	missing nts	NA
4	J3_5GAK_005 ➜	missing nts	NA
5	J3_5GAK_006 ➜	missing nts	NA
6	J3_5GAK_007 ➜	missing nts	NA
7	J3_5GAK_008 ➜	missing nts	NA

5GAK Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops