6N8L Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6N8L_001 | 1/1/38:45 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.2 | |
| HL_6N8L_002 | 1/1/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_6N8L_003 | 1/1/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_6N8L_004 | 1/1/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_98426.1 | |
| HL_6N8L_005 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_6N8L_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_6N8L_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_6N8L_008 | 1/1/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_6N8L_010 | 1/1/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_6N8L_011 | 1/1/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_6N8L_012 | 1/1/540:551 | No text annotation Not in a motif group | ||
| HL_6N8L_013 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_6N8L_014 | 1/1/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_6N8L_015 | 1/1/686:694 | No text annotation Not in a motif group | homologous HL_5TBW_015 HL_03345.1 | |
| HL_6N8L_016 | 1/1/707:712 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_42097.1 | |
| HL_6N8L_017 | 1/1/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_6N8L_022 | 1/1/958:963 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_94803.1 | |
| HL_6N8L_025 | 1/1/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_6N8L_026 | 1/1/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_6N8L_030 | 1/1/1403:1408 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_42097.1 | |
| HL_6N8L_062 | 1/1/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_6N8L_063 | 1/1/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_6N8L_064 | 1/1/2920:2926 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_6N8L_066 | 1/1/3025:3030 | No text annotation Not in a motif group | homologous HL_8C3A_066 HL_42097.1 | |
| HL_6N8L_067 | 1/1/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_6N8L_068 | 1/1/3110:3124 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.7 | |
| HL_6N8L_069 | 1/1/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_6N8L_070 | 1/1/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_6N8L_071 | 1/1/3303:3311 | No text annotation Not in a motif group | homologous HL_8C3A_071 HL_27930.1 | |
| HL_6N8L_072 | 1/1/3350:3353 | No text annotation Not in a motif group | homologous HL_8C3A_072 HL_53837.1 | |
| HL_6N8L_073 | 1/2/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_6N8L_074 | 1/2/88:93 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 | |
| HL_6N8L_075 | 1/3/47:56 | No text annotation Not in a motif group | geometric HL_7A0S_001 HL_99167.1 | |
| HL_6N8L_076 | 1/3/69:89 | No text annotation Not in a motif group | ||
| HL_6N8L_077 | 1/3/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_6N8L_078 | 1/3/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6N8L_009 | No text annotation | ||
| HL_6N8L_018 | No text annotation | ||
| HL_6N8L_019 | GNRA | ||
| HL_6N8L_020 | No text annotation | ||
| HL_6N8L_021 | No text annotation | ||
| HL_6N8L_023 | No text annotation | ||
| HL_6N8L_024 | No text annotation | ||
| HL_6N8L_027 | No text annotation | ||
| HL_6N8L_028 | No text annotation | ||
| HL_6N8L_029 | No text annotation | ||
| HL_6N8L_031 | No text annotation | ||
| HL_6N8L_032 | No text annotation | ||
| HL_6N8L_033 | Other HL | ||
| HL_6N8L_034 | No text annotation | ||
| HL_6N8L_035 | No text annotation | ||
| HL_6N8L_036 | GNRA | ||
| HL_6N8L_037 | No text annotation | ||
| HL_6N8L_038 | No text annotation | ||
| HL_6N8L_039 | No text annotation | ||
| HL_6N8L_040 | No text annotation | ||
| HL_6N8L_041 | No text annotation | ||
| HL_6N8L_042 | GNRA with one bulged base | ||
| HL_6N8L_043 | UNCG | ||
| HL_6N8L_044 | No text annotation | ||
| HL_6N8L_045 | No text annotation | ||
| HL_6N8L_046 | No text annotation | ||
| HL_6N8L_047 | No text annotation | ||
| HL_6N8L_048 | Other HL | ||
| HL_6N8L_049 | No text annotation | ||
| HL_6N8L_050 | No text annotation | ||
| HL_6N8L_051 | No text annotation | ||
| HL_6N8L_052 | No text annotation | ||
| HL_6N8L_053 | No text annotation | ||
| HL_6N8L_054 | No text annotation | ||
| HL_6N8L_055 | No text annotation | ||
| HL_6N8L_056 | No text annotation | ||
| HL_6N8L_057 | No text annotation | ||
| HL_6N8L_058 | No text annotation | ||
| HL_6N8L_059 | No text annotation | ||
| HL_6N8L_060 | No text annotation | ||
| HL_6N8L_061 | No text annotation | ||
| HL_6N8L_065 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6N8L_001 | 1/1/3:4, 1/3/155:156 | No text annotation Not in a motif group | ||
| IL_6N8L_002 | 1/1/7:8, 1/3/150:152 | Single bulged C Not in a motif group | homologous IL_5TBW_002 IL_61258.12 | |
| IL_6N8L_003 | 1/1/13:15, 1/3/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_6N8L_004 | 1/1/27:28, 1/1/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_6N8L_005 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_6N8L_006 | 1/1/82:89, 1/1/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_6N8L_007 | 1/1/123:124, 1/1/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_6N8L_008 | 1/1/125:127, 1/1/141:143 | No text annotation Not in a motif group | homologous IL_5TBW_008 IL_95997.1 | |
| IL_6N8L_009 | 1/1/163:165, 1/1/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_6N8L_010 | 1/1/168:173, 1/1/245:254 | No text annotation Not in a motif group | ||
| IL_6N8L_011 | 1/1/177:179, 1/1/237:241 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_011 IL_63450.2 | |
| IL_6N8L_012 | 1/1/189:191, 1/1/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_6N8L_013 | 1/1/337:339, 1/3/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_6N8L_014 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | homologous IL_8C3A_015 IL_60992.6 | |
| IL_6N8L_015 | 1/1/404:410, 1/3/13:19 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5TBW_015 IL_66414.6 | |
| IL_6N8L_016 | 1/1/429:431, 1/1/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_6N8L_018 | 1/1/512:513, 1/1/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_6N8L_019 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_6N8L_020 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_6N8L_021 | 1/1/668:670, 1/1/792:794 | No text annotation Not in a motif group | homologous IL_5TBW_021 IL_95997.1 | |
| IL_6N8L_022 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_6N8L_023 | 1/1/725:728, 1/1/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.1 | |
| IL_6N8L_024 | 1/1/752:753, 1/1/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.2 | |
| IL_6N8L_025 | 1/1/754:756, 1/1/775:778 | No text annotation Not in a motif group | geometric IL_4V88_475 IL_95997.1 | |
| IL_6N8L_027 | 1/1/803:805, 1/1/938:940 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_95997.1 | |
| IL_6N8L_028 | 1/1/805:809, 1/1/931:938 | No text annotation Not in a motif group | homologous IL_5TBW_028 IL_17470.6 | |
| IL_6N8L_033 | 1/1/969:971, 1/1/1110:1113 | No text annotation Not in a motif group | ||
| IL_6N8L_034 | 1/1/977:981, 1/1/1102:1104 | No text annotation Not in a motif group | homologous IL_5TBW_036 IL_67474.4 | |
| IL_6N8L_035 | 1/1/983:985, 1/1/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_6N8L_041 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_6N8L_042 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.2 | |
| IL_6N8L_043 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.7 | |
| IL_6N8L_044 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.13 | |
| IL_6N8L_045 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_6N8L_046 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_6N8L_047 | 1/1/1207:1209, 1/1/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_6N8L_048 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn Not in a motif group | homologous IL_5TBW_054 IL_90538.4 | |
| IL_6N8L_051 | 1/1/1376:1378, 1/1/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_6N8L_052 | 1/1/1385:1387, 1/1/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_6N8L_053 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_6N8L_054 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_6N8L_055 | 1/1/1444:1450, 1/1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_6N8L_084 | 1/1/2390:2394, 1/1/2986:2989 | No text annotation Not in a motif group | ||
| IL_6N8L_098 | 1/1/2824:2826, 1/1/2863:2865 | No text annotation Not in a motif group | homologous IL_5TBW_103 IL_95997.1 | |
| IL_6N8L_099 | 1/1/2826:2828, 1/1/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_6N8L_100 | 1/1/2828:2830, 1/1/2858:2862 | No text annotation Not in a motif group | homologous IL_5TBW_105 IL_92788.2 | |
| IL_6N8L_101 | 1/1/2835:2839, 1/1/2849:2853 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.8 | |
| IL_6N8L_102 | 1/1/2876:2877, 1/1/2949:2951 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_6N8L_103 | 1/1/2879:2881, 1/1/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_6N8L_104 | 1/1/2881:2882, 1/1/2940:2943 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_109 IL_71530.2 | |
| IL_6N8L_105 | 1/1/2889:2891, 1/1/2912:2914 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_6N8L_106 | 1/1/2891:2892, 1/1/2909:2912 | No text annotation Not in a motif group | homologous IL_8C3A_119 IL_95601.3 | |
| IL_6N8L_107 | 1/1/2918:2920, 1/1/2926:2928 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_6N8L_109 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_6N8L_110 | 1/1/3012:3014, 1/1/3040:3042 | No text annotation Not in a motif group | homologous IL_5TBW_115 IL_95997.1 | |
| IL_6N8L_111 | 1/1/3018:3025, 1/1/3030:3036 | No text annotation Not in a motif group | homologous IL_8C3A_125 IL_04346.7 | |
| IL_6N8L_112 | 1/1/3047:3052, 1/1/3090:3094 | No text annotation Not in a motif group | ||
| IL_6N8L_113 | 1/1/3054:3059, 1/1/3084:3088 | No text annotation Not in a motif group | homologous IL_8C3A_127 IL_17136.1 | |
| IL_6N8L_114 | 1/1/3063:3064, 1/1/3077:3080 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_6N8L_115 | 1/1/3102:3107, 1/1/3127:3132 | UAA/GAN with extra cWW Not in a motif group | geometric IL_7RQB_107 IL_49767.5 | |
| IL_6N8L_116 | 1/1/3164:3166, 1/1/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_6N8L_118 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | homologous IL_5TBW_123 IL_37497.2 | |
| IL_6N8L_119 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_6N8L_120 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_6N8L_121 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation Not in a motif group | homologous IL_5TBW_126 IL_19389.6 | |
| IL_6N8L_122 | 1/1/3233:3235, 1/1/3252:3254 | No text annotation Not in a motif group | homologous IL_5TBW_127 IL_95997.1 | |
| IL_6N8L_123 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6MWN_005 IL_30621.2 | |
| IL_6N8L_124 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_6N8L_125 | 1/1/3318:3321, 1/1/3386:3388 | No text annotation Not in a motif group | geometric IL_3LA5_001 IL_95997.1 | |
| IL_6N8L_126 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_6N8L_127 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_6N8L_128 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation Not in a motif group | homologous IL_5TBW_133 IL_83162.5 | |
| IL_6N8L_129 | 1/1/3340:3342, 1/1/3363:3364 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.13 | |
| IL_6N8L_130 | 1/1/3342:3345, 1/1/3360:3363 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_6N8L_131 | 1/1/3348:3350, 1/1/3353:3357 | No text annotation Not in a motif group | geometric IL_7A0S_026 IL_51629.2 | |
| IL_6N8L_132 | 1/2/15:16, 1/2/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_6N8L_133 | 1/2/21:27, 1/2/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_6N8L_134 | 1/2/28:29, 1/2/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_63797.2 | |
| IL_6N8L_135 | 1/2/29:30, 1/2/47:49 | Single stack bend Not in a motif group | homologous IL_5TBW_375 IL_76488.2 | |
| IL_6N8L_136 | 1/2/32:36, 1/2/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_6N8L_137 | 1/2/72:80, 1/2/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_6N8L_138 | 1/2/84:87, 1/2/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_6N8L_139 | 1/3/64:67, 1/3/92:96 | No text annotation Not in a motif group | ||
| IL_6N8L_140 | 1/3/68:69, 1/3/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6N8L_017 | No text annotation | ||
| IL_6N8L_026 | No text annotation | ||
| IL_6N8L_029 | No text annotation | ||
| IL_6N8L_030 | No text annotation | ||
| IL_6N8L_031 | Single bulged U | ||
| IL_6N8L_032 | Multiple bulged bases | ||
| IL_6N8L_036 | No text annotation | ||
| IL_6N8L_037 | No text annotation | ||
| IL_6N8L_038 | Tandem non-canonical cWW pairs | ||
| IL_6N8L_039 | No text annotation | ||
| IL_6N8L_040 | Single bulged A | ||
| IL_6N8L_049 | No text annotation | ||
| IL_6N8L_050 | Major groove platform with extra cWW | ||
| IL_6N8L_056 | No text annotation | ||
| IL_6N8L_057 | UAA/GAN | ||
| IL_6N8L_058 | Other IL | ||
| IL_6N8L_059 | Multiple bulged bases | ||
| IL_6N8L_060 | No text annotation | ||
| IL_6N8L_061 | Triple sheared with non-canonical cWW | ||
| IL_6N8L_062 | No text annotation | ||
| IL_6N8L_063 | Single bulged C | ||
| IL_6N8L_064 | Single stack bend | ||
| IL_6N8L_065 | No text annotation | ||
| IL_6N8L_066 | No text annotation | ||
| IL_6N8L_067 | Kink-turn | ||
| IL_6N8L_068 | No text annotation | ||
| IL_6N8L_069 | No text annotation | ||
| IL_6N8L_070 | No text annotation | ||
| IL_6N8L_071 | Intercalated tWH | ||
| IL_6N8L_072 | tSH-tSH-tHH-tHS | ||
| IL_6N8L_073 | No text annotation | ||
| IL_6N8L_074 | No text annotation | ||
| IL_6N8L_075 | No text annotation | ||
| IL_6N8L_076 | Kink-turn related | ||
| IL_6N8L_077 | No text annotation | ||
| IL_6N8L_078 | No text annotation | ||
| IL_6N8L_079 | Single bulged U | ||
| IL_6N8L_080 | Major groove platform with extra pair | ||
| IL_6N8L_081 | No text annotation | ||
| IL_6N8L_082 | Multiple bulged bases | ||
| IL_6N8L_083 | No text annotation | ||
| IL_6N8L_085 | Minor groove platform with intercalation | ||
| IL_6N8L_086 | No text annotation | ||
| IL_6N8L_087 | Minor groove platform | ||
| IL_6N8L_088 | Isolated tHS basepair with bulges | ||
| IL_6N8L_089 | No text annotation | ||
| IL_6N8L_090 | No text annotation | ||
| IL_6N8L_091 | No text annotation | ||
| IL_6N8L_092 | No text annotation | ||
| IL_6N8L_093 | Single bulged A | ||
| IL_6N8L_094 | Isolated tHS basepair with bulges | ||
| IL_6N8L_095 | No text annotation | ||
| IL_6N8L_096 | No text annotation | ||
| IL_6N8L_097 | Major groove platform | ||
| IL_6N8L_108 | Single bulged A | ||
| IL_6N8L_117 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6N8L_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation Not in a motif group | ||
| J3_6N8L_002 | 1/1/369:376, 1/1/403:404, 1/3/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_6N8L_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_6N8L_006 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation Not in a motif group | homologous J3_5TBW_006 NA | |
| J3_6N8L_014 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation Not in a motif group | ||
| J3_6N8L_015 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_6N8L_016 | 1/2/9:14, 1/2/66:67, 1/2/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_6N8L_017 | 1/3/43:45, 1/3/58:64, 1/3/96:101 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6N8L_004 | No text annotation | ||
| J3_6N8L_005 | No text annotation | ||
| J3_6N8L_007 | No text annotation | ||
| J3_6N8L_008 | No text annotation | ||
| J3_6N8L_009 | No text annotation | ||
| J3_6N8L_010 | No text annotation | ||
| J3_6N8L_011 | No text annotation | ||
| J3_6N8L_012 | No text annotation | ||
| J3_6N8L_013 | No text annotation |
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