6OG7 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6OG7_001 | 1/1/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 NA | |
| HL_6OG7_002 | 1/1/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_00807.1 | |
| HL_6OG7_003 | 1/1/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_70546.2 | |
| HL_6OG7_004 | 1/1/137:142 | No text annotation Not in a motif group | ||
| HL_6OG7_005 | 1/1/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_6OG7_006 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_4WF9_006 HL_06192.3 | |
| HL_6OG7_007 | 1/1/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_56241.2 | |
| HL_6OG7_008 | 1/1/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.8 | |
| HL_6OG7_009 | 1/1/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_41998.2 | |
| HL_6OG7_010 | 1/1/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.10 | |
| HL_6OG7_011 | 1/1/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.5 | |
| HL_6OG7_012 | 1/1/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.2 | |
| HL_6OG7_013 | 1/1/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_85603.1 | |
| HL_6OG7_014 | 1/1/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_85603.1 | |
| HL_6OG7_015 | 1/1/544:549 | No text annotation Not in a motif group | ||
| HL_6OG7_016 | 1/1/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_41998.2 | |
| HL_6OG7_017 | 1/1/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.4 | |
| HL_6OG7_018 | 1/1/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_85603.1 | |
| HL_6OG7_019 | 1/1/640:648 | No text annotation Not in a motif group | ||
| HL_6OG7_020 | 1/1/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.3 | |
| HL_6OG7_021 | 1/1/744:753 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.7 | |
| HL_6OG7_022 | 1/1/779:785 | No text annotation Not in a motif group | ||
| HL_6OG7_023 | 1/1/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 NA | |
| HL_6OG7_024 | 1/1/884:892 | No text annotation Not in a motif group | ||
| HL_6OG7_025 | 1/1/955:962 | No text annotation Not in a motif group | homologous HL_7A0S_026 HL_85603.1 | |
| HL_6OG7_026 | 1/1/978:985 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.3 | |
| HL_6OG7_027 | 1/1/1064:1074 | No text annotation Not in a motif group | ||
| HL_6OG7_028 | 1/1/1092:1099 | No text annotation Not in a motif group | homologous HL_7RQB_030 NA | |
| HL_6OG7_029 | 1/1/1171:1178 | No text annotation Not in a motif group | ||
| HL_6OG7_030 | 1/1/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.3 | |
| HL_6OG7_031 | 1/1/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_41998.2 | |
| HL_6OG7_032 | 1/1/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.2 | |
| HL_6OG7_033 | 1/1/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.3 | |
| HL_6OG7_034 | 1/1/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 NA | |
| HL_6OG7_035 | 1/1/1450:1461 | No text annotation Not in a motif group | ||
| HL_6OG7_036 | 1/1/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.2 | |
| HL_6OG7_037 | 1/1/1533:1538 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_91104.2 | |
| HL_6OG7_038 | 1/1/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 NA | |
| HL_6OG7_039 | 1/1/1612:1619 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.3 | |
| HL_6OG7_040 | 1/1/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_85603.1 | |
| HL_6OG7_041 | 1/1/1691:1696 | UNCG Not in a motif group | geometric HL_5J7L_030 HL_29960.1 | |
| HL_6OG7_042 | 1/1/1727:1733 | No text annotation Not in a motif group | ||
| HL_6OG7_043 | 1/1/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.6 | |
| HL_6OG7_044 | 1/1/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.6 | |
| HL_6OG7_045 | 1/1/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_85603.1 | |
| HL_6OG7_046 | 1/1/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_85603.1 | |
| HL_6OG7_047 | 1/1/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_6OG7_048 | 1/1/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.2 | |
| HL_6OG7_049 | 1/1/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.7 | |
| HL_6OG7_050 | 1/1/2139:2152 | No text annotation Not in a motif group | ||
| HL_6OG7_051 | 1/1/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.7 | |
| HL_6OG7_052 | 1/1/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.3 | |
| HL_6OG7_053 | 1/1/2264:2276 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.7 | |
| HL_6OG7_054 | 1/1/2303:2313 | No text annotation Not in a motif group | ||
| HL_6OG7_055 | 1/1/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.5 | |
| HL_6OG7_056 | 1/1/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.3 | |
| HL_6OG7_057 | 1/1/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_85603.1 | |
| HL_6OG7_058 | 1/1/2404:2413 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_40210.3 | |
| HL_6OG7_059 | 1/1/2470:2480 | No text annotation Not in a motif group | ||
| HL_6OG7_060 | 1/1/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_91104.2 | |
| HL_6OG7_061 | 1/1/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_6OG7_062 | 1/1/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 NA | |
| HL_6OG7_063 | 1/1/2658:2663 | No text annotation Not in a motif group | homologous HL_7RQB_064 NA | |
| HL_6OG7_064 | 1/1/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.2 | |
| HL_6OG7_065 | 1/1/2745:2759 | No text annotation Not in a motif group | homologous HL_4WF9_062 HL_56677.8 | |
| HL_6OG7_066 | 1/1/2795:2801 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_91104.2 | |
| HL_6OG7_067 | 1/1/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_64690.2 | |
| HL_6OG7_068 | 1/1/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_85603.1 | |
| HL_6OG7_069 | 1/2/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_83767.1 | |
| HL_6OG7_070 | 1/2/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.6 | |
| HL_6OG7_071 | 1/3/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_6OG7_072 | 1/3/76:93 | No text annotation Not in a motif group | ||
| HL_6OG7_073 | 1/3/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_85603.1 | |
| HL_6OG7_074 | 1/3/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_85603.1 | |
| HL_6OG7_075 | 1/3/206:213 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
| HL_6OG7_076 | 1/3/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.3 | |
| HL_6OG7_077 | 1/3/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_85603.1 | |
| HL_6OG7_078 | 1/3/320:333 | No text annotation Not in a motif group | homologous HL_6CZR_079 HL_81205.2 | |
| HL_6OG7_079 | 1/3/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_29960.1 | |
| HL_6OG7_080 | 1/3/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_85603.1 | |
| HL_6OG7_081 | 1/3/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_29960.1 | |
| HL_6OG7_082 | 1/3/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.3 | |
| HL_6OG7_083 | 1/3/522:527 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_70546.2 | |
| HL_6OG7_084 | 1/3/617:623 | No text annotation Not in a motif group | homologous HL_6CZR_085 HL_26881.3 | |
| HL_6OG7_085 | 1/3/689:698 | No text annotation Not in a motif group | homologous HL_6CZR_086 HL_12326.2 | |
| HL_6OG7_086 | 1/3/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.3 | |
| HL_6OG7_087 | 1/3/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.2 | |
| HL_6OG7_088 | 1/3/840:846 | No text annotation Not in a motif group | ||
| HL_6OG7_089 | 1/3/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_85603.1 | |
| HL_6OG7_090 | 1/3/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_85603.1 | |
| HL_6OG7_091 | 1/3/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_6OG7_092 | 1/3/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_85603.1 | |
| HL_6OG7_093 | 1/3/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_85603.1 | |
| HL_6OG7_094 | 1/3/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_6OG7_095 | 1/3/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_6OG7_096 | 1/3/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.4 | |
| HL_6OG7_097 | 1/3/1265:1270 | No text annotation Not in a motif group | homologous HL_6CZR_099 NA | |
| HL_6OG7_098 | 1/3/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_41998.2 | |
| HL_6OG7_099 | 1/3/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_6OG7_100 | 1/3/1449:1454 | No text annotation Not in a motif group | geometric HL_7RQB_011 NA | |
| HL_6OG7_101 | 1/3/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_6OG7_102 | 1/5/13:22 | No text annotation Not in a motif group | homologous HL_5E81_211 NA | |
| HL_6OG7_103 | 1/5/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.4 | |
| HL_6OG7_104 | 1/5/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4LCK_003 HL_22280.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6OG7_001 | 1/1/24:30, 1/1/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_4WF9_001 IL_66414.7 | |
| IL_6OG7_002 | 1/1/36:37, 1/1/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.7 | |
| IL_6OG7_003 | 1/1/43:44, 1/1/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.5 | |
| IL_6OG7_004 | 1/1/81:85, 1/1/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 NA | |
| IL_6OG7_005 | 1/1/183:184, 1/1/212:214 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_76488.5 | |
| IL_6OG7_006 | 1/1/188:194, 1/1/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7A0S_006 IL_04346.8 | |
| IL_6OG7_007 | 1/1/239:245, 1/1/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.3 | |
| IL_6OG7_008 | 1/1/269:271, 1/1/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_6OG7_009 | 1/1/274:282, 1/1/358:363 | No text annotation Not in a motif group | ||
| IL_6OG7_010 | 1/1/293:295, 1/1/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.2 | |
| IL_6OG7_011 | 1/1/481:484, 1/1/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.7 | |
| IL_6OG7_012 | 1/1/536:539, 1/1/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.11 | |
| IL_6OG7_013 | 1/1/564:566, 1/1/575:577 | No text annotation Not in a motif group | geometric IL_4Y1M_005 IL_70707.3 | |
| IL_6OG7_014 | 1/1/606:610, 1/1/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.2 | |
| IL_6OG7_015 | 1/1/672:674, 1/1/806:808 | No text annotation Not in a motif group | geometric IL_4WF9_020 IL_86319.3 | |
| IL_6OG7_016 | 1/1/674:678, 1/1/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 NA | |
| IL_6OG7_017 | 1/1/697:698, 1/1/763:765 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.7 | |
| IL_6OG7_018 | 1/1/702:703, 1/1/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 NA | |
| IL_6OG7_019 | 1/1/703:707, 1/1/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 NA | |
| IL_6OG7_020 | 1/1/738:740, 1/1/757:758 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.4 | |
| IL_6OG7_021 | 1/1/775:777, 1/1/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 NA | |
| IL_6OG7_022 | 1/1/844:847, 1/1/933:934 | Other IL Not in a motif group | homologous IL_5J7L_267 IL_92001.2 | |
| IL_6OG7_023 | 1/1/847:848, 1/1/930:933 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
| IL_6OG7_024 | 1/1/850:851, 1/1/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.5 | |
| IL_6OG7_025 | 1/1/856:862, 1/1/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_6OG7_026 | 1/1/862:863, 1/1/913:915 | Single bulged G Not in a motif group | homologous IL_5J7L_271 IL_00225.4 | |
| IL_6OG7_027 | 1/1/864:868, 1/1/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.7 | |
| IL_6OG7_028 | 1/1/870:872, 1/1/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_86319.3 | |
| IL_6OG7_029 | 1/1/874:879, 1/1/898:903 | No text annotation Not in a motif group | ||
| IL_6OG7_030 | 1/1/880:881, 1/1/895:897 | No text annotation Not in a motif group | ||
| IL_6OG7_031 | 1/1/994:996, 1/1/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 NA | |
| IL_6OG7_032 | 1/1/998:1002, 1/1/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.3 | |
| IL_6OG7_033 | 1/1/1004:1011, 1/1/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.8 | |
| IL_6OG7_034 | 1/1/1011:1013, 1/1/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.17 | |
| IL_6OG7_035 | 1/1/1018:1024, 1/1/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.4 | |
| IL_6OG7_036 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.2 | |
| IL_6OG7_037 | 1/1/1031:1034, 1/1/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 NA | |
| IL_6OG7_038 | 1/1/1038:1041, 1/1/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.4 | |
| IL_6OG7_039 | 1/1/1042:1051, 1/1/1108:1113 | No text annotation Not in a motif group | ||
| IL_6OG7_040 | 1/1/1059:1062, 1/1/1076:1079 | No text annotation Not in a motif group | homologous IL_5J7L_285 IL_23544.2 | |
| IL_6OG7_041 | 1/1/1087:1091, 1/1/1100:1102 | No text annotation Not in a motif group | ||
| IL_6OG7_042 | 1/1/1196:1198, 1/1/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.5 | |
| IL_6OG7_043 | 1/1/1202:1206, 1/1/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6OG7_044 | 1/1/1208:1215, 1/1/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 NA | |
| IL_6OG7_045 | 1/1/1262:1269, 1/1/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.8 | |
| IL_6OG7_046 | 1/1/1310:1313, 1/1/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 NA | |
| IL_6OG7_047 | 1/1/1319:1323, 1/1/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.7 | |
| IL_6OG7_048 | 1/1/1351:1355, 1/1/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 NA | |
| IL_6OG7_049 | 1/1/1357:1361, 1/1/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.2 | |
| IL_6OG7_050 | 1/1/1415:1416, 1/1/1582:1587 | No text annotation Not in a motif group | geometric IL_5J7L_294 IL_90348.1 | |
| IL_6OG7_051 | 1/1/1416:1421, 1/1/1577:1582 | No text annotation Not in a motif group | ||
| IL_6OG7_052 | 1/1/1432:1435, 1/1/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_6OG7_053 | 1/1/1437:1440, 1/1/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7A0S_053 IL_04059.2 | |
| IL_6OG7_054 | 1/1/1467:1471, 1/1/1520:1525 | tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_056 IL_62654.1 | |
| IL_6OG7_055 | 1/1/1473:1478, 1/1/1513:1518 | No text annotation Not in a motif group | ||
| IL_6OG7_056 | 1/1/1481:1482, 1/1/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.5 | |
| IL_6OG7_057 | 1/1/1489:1491, 1/1/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.7 | |
| IL_6OG7_058 | 1/1/1526:1530, 1/1/1541:1546 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_6OG7_059 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.3 | |
| IL_6OG7_060 | 1/1/1663:1665, 1/1/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.8 | |
| IL_6OG7_061 | 1/1/1666:1669, 1/1/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 NA | |
| IL_6OG7_062 | 1/1/1669:1674, 1/1/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_4WF9_065 IL_76273.2 | |
| IL_6OG7_063 | 1/1/1686:1691, 1/1/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 NA | |
| IL_6OG7_064 | 1/1/1712:1718, 1/1/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_6OG7_065 | 1/1/1720:1726, 1/1/1734:1740 | No text annotation Not in a motif group | ||
| IL_6OG7_066 | 1/1/1770:1771, 1/1/1980:1982 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.7 | |
| IL_6OG7_067 | 1/1/1798:1804, 1/1/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7A0S_065 IL_17069.4 | |
| IL_6OG7_068 | 1/1/1837:1840, 1/1/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_066 IL_88739.4 | |
| IL_6OG7_069 | 1/1/1841:1842, 1/1/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.3 | |
| IL_6OG7_070 | 1/1/1846:1849, 1/1/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 NA | |
| IL_6OG7_071 | 1/1/1864:1867, 1/1/1874:1878 | UAA/GAN Not in a motif group | homologous IL_4WF9_075 IL_77691.2 | |
| IL_6OG7_072 | 1/1/1933:1934, 1/1/1964:1967 | No text annotation Not in a motif group | geometric IL_4WF9_076 IL_59677.3 | |
| IL_6OG7_073 | 1/1/1934:1945, 1/1/1961:1964 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_6OG7_074 | 1/1/2050:2052, 1/1/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.4 | |
| IL_6OG7_075 | 1/1/2054:2056, 1/1/2612:2615 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_6OG7_076 | 1/1/2067:2069, 1/1/2442:2443 | Single bulged U Not in a motif group | homologous IL_4WF9_080 IL_83039.17 | |
| IL_6OG7_077 | 1/1/2070:2072, 1/1/2437:2441 | No text annotation Not in a motif group | ||
| IL_6OG7_078 | 1/1/2081:2083, 1/1/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.8 | |
| IL_6OG7_079 | 1/1/2085:2087, 1/1/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 NA | |
| IL_6OG7_080 | 1/1/2102:2105, 1/1/2184:2187 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.4 | |
| IL_6OG7_081 | 1/1/2105:2121, 1/1/2177:2184 | No text annotation Not in a motif group | ||
| IL_6OG7_082 | 1/1/2202:2204, 1/1/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.17 | |
| IL_6OG7_083 | 1/1/2350:2353, 1/1/2364:2367 | Double sheared Not in a motif group | homologous IL_4WF9_087 IL_09705.11 | |
| IL_6OG7_084 | 1/1/2401:2403, 1/1/2414:2415 | No text annotation Not in a motif group | ||
| IL_6OG7_085 | 1/1/2453:2454, 1/1/2498:2500 | Single stack bend Not in a motif group | homologous IL_4WF9_089 IL_76488.5 | |
| IL_6OG7_086 | 1/1/2454:2455, 1/1/2496:2498 | Major groove platform Not in a motif group | geometric IL_4WF9_090 IL_27635.4 | |
| IL_6OG7_087 | 1/1/2456:2459, 1/1/2493:2495 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 NA | |
| IL_6OG7_088 | 1/1/2459:2461, 1/1/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 NA | |
| IL_6OG7_089 | 1/1/2466:2470, 1/1/2480:2484 | Triple sheared Not in a motif group | geometric IL_7A0S_087 IL_56467.9 | |
| IL_6OG7_090 | 1/1/2507:2509, 1/1/2579:2582 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 NA | |
| IL_6OG7_091 | 1/1/2510:2512, 1/1/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 NA | |
| IL_6OG7_092 | 1/1/2512:2513, 1/1/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.3 | |
| IL_6OG7_093 | 1/1/2522:2523, 1/1/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.4 | |
| IL_6OG7_094 | 1/1/2589:2591, 1/1/2603:2605 | No text annotation Not in a motif group | geometric IL_4YHW_001 IL_70707.3 | |
| IL_6OG7_095 | 1/1/2591:2592, 1/1/2601:2603 | No text annotation Not in a motif group | ||
| IL_6OG7_096 | 1/1/2636:2640, 1/1/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.2 | |
| IL_6OG7_097 | 1/1/2652:2658, 1/1/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 NA | |
| IL_6OG7_098 | 1/1/2680:2684, 1/1/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.7 | |
| IL_6OG7_099 | 1/1/2687:2691, 1/1/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.4 | |
| IL_6OG7_100 | 1/1/2695:2696, 1/1/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.3 | |
| IL_6OG7_101 | 1/1/2737:2742, 1/1/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7A0S_098 IL_49767.6 | |
| IL_6OG7_102 | 1/1/2806:2811, 1/1/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_49460.2 | |
| IL_6OG7_103 | 1/1/2838:2839, 1/1/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.3 | |
| IL_6OG7_104 | 1/1/2843:2846, 1/1/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.4 | |
| IL_6OG7_105 | 1/1/2847:2852, 1/1/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 NA | |
| IL_6OG7_106 | 1/2/17:18, 1/2/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.7 | |
| IL_6OG7_107 | 1/2/23:28, 1/2/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_6OG7_108 | 1/2/30:31, 1/2/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V9F_103 IL_09061.9 | |
| IL_6OG7_109 | 1/2/34:38, 1/2/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_5J7L_358 IL_58103.7 | |
| IL_6OG7_110 | 1/2/71:79, 1/2/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.4 | |
| IL_6OG7_111 | 1/3/30:32, 1/3/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.4 | |
| IL_6OG7_112 | 1/3/44:45, 1/3/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.7 | |
| IL_6OG7_113 | 1/3/47:52, 1/3/359:361 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_14177.1 | |
| IL_6OG7_114 | 1/3/54:56, 1/3/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_80097.2 | |
| IL_6OG7_115 | 1/3/63:66, 1/3/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_6OG7_116 | 1/3/67:69, 1/3/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_6OG7_117 | 1/3/70:73, 1/3/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_6OG7_118 | 1/3/75:76, 1/3/93:95 | Major groove intercalation Not in a motif group | geometric IL_5J7L_352 IL_16396.3 | |
| IL_6OG7_119 | 1/3/128:131, 1/3/231:233 | No text annotation Not in a motif group | ||
| IL_6OG7_120 | 1/3/132:136, 1/3/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.4 | |
| IL_6OG7_121 | 1/3/144:146, 1/3/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_70707.3 | |
| IL_6OG7_122 | 1/3/147:153, 1/3/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_6OG7_123 | 1/3/203:206, 1/3/213:214 | Minor groove platform Not in a motif group | geometric IL_3MXH_005 IL_15052.1 | |
| IL_6OG7_124 | 1/3/242:247, 1/3/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.3 | |
| IL_6OG7_125 | 1/3/249:252, 1/3/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_6OG7_126 | 1/3/292:293, 1/3/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_6OG7_127 | 1/3/367:369, 1/3/392:393 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.17 | |
| IL_6OG7_128 | 1/3/371:375, 1/3/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6OG7_129 | 1/3/375:376, 1/3/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.4 | |
| IL_6OG7_130 | 1/3/409:416, 1/3/427:433 | No text annotation Not in a motif group | homologous IL_5J7L_020 IL_28026.1 | |
| IL_6OG7_131 | 1/3/440:442, 1/3/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_6OG7_132 | 1/3/446:450, 1/3/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_88269.3 | |
| IL_6OG7_133 | 1/3/450:455, 1/3/477:483 | No text annotation Not in a motif group | geometric IL_5J7L_023 IL_70801.1 | |
| IL_6OG7_134 | 1/3/504:511, 1/3/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.8 | |
| IL_6OG7_135 | 1/3/515:521, 1/3/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_6OG7_136 | 1/3/569:575, 1/3/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.1 | |
| IL_6OG7_137 | 1/3/580:584, 1/3/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.2 | |
| IL_6OG7_138 | 1/3/594:596, 1/3/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.4 | |
| IL_6OG7_139 | 1/3/597:598, 1/3/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.9 | |
| IL_6OG7_140 | 1/3/605:612, 1/3/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_6OG7_141 | 1/3/654:655, 1/3/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_031 IL_50694.3 | |
| IL_6OG7_142 | 1/3/659:660, 1/3/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.5 | |
| IL_6OG7_143 | 1/3/662:666, 1/3/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_6OG7_144 | 1/3/673:678, 1/3/712:717 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.2 | |
| IL_6OG7_145 | 1/3/684:688, 1/3/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.3 | |
| IL_6OG7_146 | 1/3/774:778, 1/3/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_6OG7_147 | 1/3/779:783, 1/3/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.2 | |
| IL_6OG7_148 | 1/3/887:894, 1/3/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_6OG7_149 | 1/3/922:924, 1/3/1392:1395 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_43275.2 | |
| IL_6OG7_150 | 1/3/925:927, 1/3/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.4 | |
| IL_6OG7_151 | 1/3/933:935, 1/3/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_6OG7_152 | 1/3/953:954, 1/3/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_6OG7_153 | 1/3/993:997, 1/3/1044:1045 | Minor groove platform Not in a motif group | geometric IL_5J7L_043 IL_47078.1 | |
| IL_6OG7_154 | 1/3/998:999, 1/3/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.5 | |
| IL_6OG7_155 | 1/3/1003:1007, 1/3/1022:1037 | No text annotation Not in a motif group | ||
| IL_6OG7_156 | 1/3/1048:1050, 1/3/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.17 | |
| IL_6OG7_157 | 1/3/1051:1056, 1/3/1204:1207 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5C5W_001 IL_30621.4 | |
| IL_6OG7_158 | 1/3/1057:1059, 1/3/1198:1203 | No text annotation Not in a motif group | ||
| IL_6OG7_159 | 1/3/1060:1061, 1/3/1195:1197 | Single bulged U Not in a motif group | homologous IL_6CZR_156 IL_83039.17 | |
| IL_6OG7_160 | 1/3/1061:1063, 1/3/1193:1195 | No text annotation Not in a motif group | geometric IL_5VCI_001 IL_86319.3 | |
| IL_6OG7_161 | 1/3/1124:1128, 1/3/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_6OG7_162 | 1/3/1129:1132, 1/3/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_6OG7_163 | 1/3/1158:1161, 1/3/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_6OG7_164 | 1/3/1247:1253, 1/3/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_6OG7_165 | 1/3/1255:1258, 1/3/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_6OG7_166 | 1/3/1259:1263, 1/3/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.9 | |
| IL_6OG7_167 | 1/3/1303:1308, 1/3/1329:1334 | No text annotation Not in a motif group | geometric IL_5J7L_057 IL_19954.2 | |
| IL_6OG7_168 | 1/3/1399:1401, 1/3/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_6OG7_169 | 1/3/1401:1404, 1/3/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6OG7_170 | 1/3/1405:1407, 1/3/1494:1496 | No text annotation Not in a motif group | geometric IL_5MWI_007 IL_86319.3 | |
| IL_6OG7_171 | 1/3/1407:1409, 1/3/1491:1494 | Decoding loop related Not in a motif group | geometric IL_2O3X_003 IL_02284.7 | |
| IL_6OG7_172 | 1/3/1412:1414, 1/3/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_86319.3 | |
| IL_6OG7_173 | 1/3/1416:1419, 1/3/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.11 | |
| IL_6OG7_174 | 1/3/1429:1435, 1/3/1466:1471 | No text annotation Not in a motif group | ||
| IL_6OG7_175 | 1/3/1440:1442, 1/3/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_42622.5 | |
| IL_6OG7_176 | 1/3/1445:1448, 1/3/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.7 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6OG7_001 | 1/1/30:31, 1/1/474:481, 1/1/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_6OG7_002 | 1/1/56:57, 1/1/70:76, 1/1/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_6OG7_003 | 1/1/683:689, 1/1/773:775, 1/1/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_6OG7_004 | 1/1/698:700, 1/1/732:736, 1/1/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_6OG7_005 | 1/1/1055:1057, 1/1/1081:1087, 1/1/1102:1104 | No text annotation Not in a motif group | homologous J3_6PRV_001 NA | |
| J3_6OG7_006 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation Not in a motif group | homologous J3_4WF9_004 NA | |
| J3_6OG7_007 | 1/1/1306:1309, 1/1/1605:1611, 1/1/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_6OG7_008 | 1/1/1344:1349, 1/1/1382:1385, 1/1/1402:1403 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_6OG7_009 | 1/1/2091:2093, 1/1/2196:2200, 1/1/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_6OG7_010 | 1/1/2295:2299, 1/1/2317:2323, 1/1/2332:2337 | No text annotation Not in a motif group | ||
| J3_6OG7_011 | 1/1/2517:2520, 1/1/2545:2547, 1/1/2561:2567 | No text annotation Not in a motif group | homologous J3_4WF9_009 NA | |
| J3_6OG7_012 | 1/1/2789:2792, 1/1/2804:2806, 1/1/2892:2894 | No text annotation Not in a motif group | ||
| J3_6OG7_013 | 1/1/2812:2815, 1/1/2831:2836, 1/1/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_6OG7_014 | 1/2/10:16, 1/2/68:70, 1/2/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA | |
| J3_6OG7_015 | 1/3/46:47, 1/3/361:367, 1/3/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_6OG7_016 | 1/3/586:588, 1/3/651:654, 1/3/754:755 | No text annotation Not in a motif group | ||
| J3_6OG7_017 | 1/3/672:673, 1/3/717:725, 1/3/732:734 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
| J3_6OG7_018 | 1/3/826:829, 1/3/857:861, 1/3/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_6OG7_019 | 1/3/936:939, 1/3/1344:1350, 1/3/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_6OG7_020 | 1/3/943:946, 1/3/1235:1237, 1/3/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_6OG7_021 | 1/3/955:962, 1/3/973:984, 1/3/1221:1225 | No text annotation Not in a motif group | ||
| J3_6OG7_022 | 1/3/990:993, 1/3/1045:1047, 1/3/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_6OG7_023 | 1/3/1063:1068, 1/3/1107:1113, 1/3/1187:1193 | No text annotation Not in a motif group | ||
| J3_6OG7_024 | 1/3/1073:1074, 1/3/1083:1087, 1/3/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_6OG7_025 | 1/3/1116:1118, 1/3/1155:1158, 1/3/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_6OG7_026 | 1/3/1237:1241, 1/3/1296:1303, 1/3/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA |
Problematic loops
No problematic loops
Coloring options: