6W2T Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6W2T_001 | 1/A/392:399 | No text annotation Not in a motif group | geometric HL_5TBW_021 HL_33817.1 | |
| HL_6W2T_002 | 1/A/408:435 | No text annotation Not in a motif group | ||
| HL_6W2T_003 | 1/A/483:493 | No text annotation Not in a motif group | ||
| HL_6W2T_004 | 1/A/531:546 | No text annotation Not in a motif group | ||
| HL_6W2T_005 | 1/A/557:563 | No text annotation Not in a motif group | geometric HL_7RQB_011 HL_75407.1 | |
| HL_6W2T_006 | 1/A/647:656 | No text annotation Not in a motif group | ||
| HL_6W2T_007 | 1/a/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6W2T_008 | 1/a/69:80 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_6W2T_009 | 1/a/156:162 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_6W2T_010 | 1/a/197:202 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_6W2T_011 | 1/a/288:295 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_27930.1 | |
| HL_6W2T_012 | 1/a/322:329 | No text annotation Not in a motif group | ||
| HL_6W2T_013 | 1/a/377:387 | No text annotation Not in a motif group | ||
| HL_6W2T_014 | 1/a/416:421 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6W2T_015 | 1/a/441:452 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6W2T_016 | 1/a/462:467 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_6W2T_017 | 1/a/498:504 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6W2T_018 | 1/a/539:544 | No text annotation Not in a motif group | ||
| HL_6W2T_019 | 1/a/569:581 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_6W2T_020 | 1/a/618:623 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_6W2T_021 | 1/a/820:828 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6W2T_022 | 1/a/833:841 | No text annotation Not in a motif group | ||
| HL_6W2T_023 | 1/a/885:901 | No text annotation Not in a motif group | ||
| HL_6W2T_024 | 1/a/957:966 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6W2T_025 | 1/a/994:999 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6W2T_026 | 1/a/1054:1064 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_6W2T_027 | 1/a/1113:1120 | No text annotation Not in a motif group | ||
| HL_6W2T_028 | 1/a/1141:1146 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_6W2T_029 | 1/a/1178:1183 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_6W2T_030 | 1/a/1245:1254 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_6W2T_031 | 1/a/1295:1304 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_6W2T_032 | 1/a/1353:1358 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_6W2T_033 | 1/a/1366:1373 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_6W2T_034 | 1/a/1416:1424 | No text annotation Not in a motif group | ||
| HL_6W2T_035 | 1/a/1460:1466 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_6W2T_036 | 1/a/1565:1570 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_6W2T_037 | 1/a/1614:1625 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_6W2T_038 | 1/a/1658:1666 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6W2T_039 | 1/a/1759:1773 | No text annotation Not in a motif group | ||
| HL_6W2T_040 | 1/a/1847:1852 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6W2T_001 | 1/A/362:370, 1/A/454:461 | No text annotation Not in a motif group | ||
| IL_6W2T_002 | 1/A/371:373, 1/A/450:453 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_340 IL_90933.2 | |
| IL_6W2T_003 | 1/A/374:378, 1/A/445:449 | Triple sheared Not in a motif group | geometric IL_4WFL_001 IL_56467.8 | |
| IL_6W2T_004 | 1/A/378:382, 1/A/439:445 | No text annotation Not in a motif group | ||
| IL_6W2T_005 | 1/A/390:392, 1/A/399:401 | No text annotation Not in a motif group | geometric IL_2ZKO_001 IL_95997.1 | |
| IL_6W2T_006 | 1/A/594:600, 1/A/682:689 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge Not in a motif group | geometric IL_4V9F_012 IL_59724.1 | |
| IL_6W2T_007 | 1/A/600:605, 1/A/676:682 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_6W2T_008 | 1/a/23:25, 1/a/649:651 | No text annotation Not in a motif group | geometric IL_3MEI_002 IL_95997.1 | |
| IL_6W2T_009 | 1/a/34:36, 1/a/519:521 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_6W2T_010 | 1/a/37:40, 1/a/514:518 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.9 | |
| IL_6W2T_011 | 1/a/41:47, 1/a/479:481 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_6W2T_012 | 1/a/49:51, 1/a/476:477 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6W2T_013 | 1/a/57:62, 1/a/86:88 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6W2T_014 | 1/a/63:68, 1/a/81:85 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_6W2T_015 | 1/a/108:110, 1/a/351:353 | No text annotation Not in a motif group | geometric IL_1T0E_002 IL_95997.1 | |
| IL_6W2T_016 | 1/a/110:112, 1/a/349:351 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_6W2T_017 | 1/a/112:115, 1/a/348:349 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_6W2T_018 | 1/a/116:121, 1/a/343:347 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6W2T_019 | 1/a/123:125, 1/a/338:341 | No text annotation Not in a motif group | ||
| IL_6W2T_020 | 1/a/130:144, 1/a/175:182 | No text annotation Not in a motif group | ||
| IL_6W2T_021 | 1/a/144:151, 1/a/167:175 | No text annotation Not in a motif group | ||
| IL_6W2T_022 | 1/a/152:154, 1/a/164:166 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_6W2T_023 | 1/a/188:192, 1/a/207:211 | Triple sheared Not in a motif group | geometric IL_4WFL_001 IL_56467.8 | |
| IL_6W2T_024 | 1/a/193:195, 1/a/205:206 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6W2T_025 | 1/a/195:196, 1/a/203:205 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_6W2T_026 | 1/a/216:219, 1/a/302:309 | No text annotation Not in a motif group | ||
| IL_6W2T_027 | 1/a/223:288, 1/a/295:298 | No text annotation Not in a motif group | ||
| IL_6W2T_028 | 1/a/312:314, 1/a/336:337 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6W2T_029 | 1/a/316:319, 1/a/332:334 | No text annotation Not in a motif group | ||
| IL_6W2T_030 | 1/a/359:364, 1/a/396:403 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6W2T_031 | 1/a/366:371, 1/a/393:394 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6W2T_032 | 1/a/411:413, 1/a/424:429 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6W2T_033 | 1/a/437:439, 1/a/454:456 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6W2T_034 | 1/a/459:461, 1/a/468:470 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_6W2T_035 | 1/a/487:489, 1/a/511:512 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.13 | |
| IL_6W2T_036 | 1/a/491:495, 1/a/508:509 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6W2T_037 | 1/a/495:496, 1/a/506:508 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6W2T_038 | 1/a/529:530, 1/a/554:556 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.2 | |
| IL_6W2T_039 | 1/a/535:537, 1/a/546:549 | No text annotation Not in a motif group | ||
| IL_6W2T_040 | 1/a/563:565, 1/a/585:592 | No text annotation Not in a motif group | homologous IL_8C3A_420 IL_55023.1 | |
| IL_6W2T_041 | 1/a/566:569, 1/a/581:584 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_30621.2 | |
| IL_6W2T_042 | 1/a/599:608, 1/a/635:637 | No text annotation Not in a motif group | ||
| IL_6W2T_043 | 1/a/611:617, 1/a/624:632 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_6W2T_044 | 1/a/663:665, 1/a/1162:1164 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_6W2T_045 | 1/a/665:671, 1/a/1161:1162 | No text annotation Not in a motif group | geometric IL_4LFB_022 IL_69996.1 | |
| IL_6W2T_046 | 1/a/673:675, 1/a/1030:1032 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6W2T_047 | 1/a/676:680, 1/a/1025:1029 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6W2T_048 | 1/a/692:695, 1/a/731:734 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_110 IL_67743.1 | |
| IL_6W2T_049 | 1/a/745:749, 1/a/794:796 | No text annotation Not in a motif group | ||
| IL_6W2T_050 | 1/a/752:754, 1/a/790:791 | No text annotation Not in a motif group | ||
| IL_6W2T_051 | 1/a/802:803, 1/a/860:863 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_6W2T_052 | 1/a/805:807, 1/a/856:858 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_6W2T_053 | 1/a/807:816, 1/a/848:856 | No text annotation Not in a motif group | ||
| IL_6W2T_054 | 1/a/874:876, 1/a/910:912 | No text annotation Not in a motif group | geometric IL_5Y85_006 IL_95997.1 | |
| IL_6W2T_055 | 1/a/877:879, 1/a/907:909 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_6W2T_056 | 1/a/922:923, 1/a/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
| IL_6W2T_057 | 1/a/924:927, 1/a/1014:1018 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.2 | |
| IL_6W2T_058 | 1/a/927:931, 1/a/1010:1014 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_6W2T_059 | 1/a/931:935, 1/a/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_6W2T_060 | 1/a/942:945, 1/a/981:984 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_6W2T_061 | 1/a/952:956, 1/a/967:974 | Kink-turn Not in a motif group | homologous IL_4V88_434 IL_45067.2 | |
| IL_6W2T_062 | 1/a/1042:1047, 1/a/1071:1073 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
| IL_6W2T_063 | 1/a/1047:1051, 1/a/1067:1071 | tSH-tHW-tHS Not in a motif group | geometric IL_4LFB_033 IL_17136.1 | |
| IL_6W2T_064 | 1/a/1091:1093, 1/a/1152:1158 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6W2T_065 | 1/a/1098:1101, 1/a/1131:1134 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_6W2T_066 | 1/a/1101:1103, 1/a/1129:1131 | No text annotation Not in a motif group | geometric IL_4V9F_105 IL_95997.1 | |
| IL_6W2T_067 | 1/a/1108:1110, 1/a/1123:1124 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_6W2T_068 | 1/a/1168:1175, 1/a/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_6W2T_069 | 1/a/1203:1204, 1/a/1694:1696 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_6W2T_070 | 1/a/1206:1208, 1/a/1691:1692 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_6W2T_071 | 1/a/1214:1217, 1/a/1681:1685 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6W2T_072 | 1/a/1230:1232, 1/a/1526:1528 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_6W2T_073 | 1/a/1235:1236, 1/a/1521:1523 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6W2T_074 | 1/a/1270:1272, 1/a/1510:1512 | Isolated cWH basepair Not in a motif group | geometric IL_6IA2_003 IL_51629.2 | |
| IL_6W2T_075 | 1/a/1280:1287, 1/a/1314:1317 | No text annotation Not in a motif group | ||
| IL_6W2T_076 | 1/a/1287:1290, 1/a/1309:1314 | No text annotation Not in a motif group | ||
| IL_6W2T_077 | 1/a/1291:1294, 1/a/1305:1308 | No text annotation Not in a motif group | ||
| IL_6W2T_078 | 1/a/1325:1327, 1/a/1502:1503 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_6W2T_079 | 1/a/1329:1333, 1/a/1498:1500 | Isolated cWS basepair Not in a motif group | geometric IL_4V88_450 IL_76319.2 | |
| IL_6W2T_080 | 1/a/1333:1335, 1/a/1492:1498 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_6W2T_081 | 1/a/1337:1338, 1/a/1488:1490 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_6W2T_082 | 1/a/1347:1349, 1/a/1380:1382 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_6W2T_083 | 1/a/1363:1365, 1/a/1374:1375 | No text annotation Not in a motif group | ||
| IL_6W2T_084 | 1/a/1395:1399, 1/a/1447:1450 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.2 | |
| IL_6W2T_085 | 1/a/1402:1405, 1/a/1441:1444 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_6W2T_086 | 1/a/1412:1413, 1/a/1427:1429 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6W2T_087 | 1/a/1537:1539, 1/a/1594:1596 | No text annotation Not in a motif group | geometric IL_4P3T_001 IL_95997.1 | |
| IL_6W2T_088 | 1/a/1550:1558, 1/a/1577:1582 | No text annotation Not in a motif group | geometric IL_5J7L_055 IL_75461.4 | |
| IL_6W2T_089 | 1/a/1560:1562, 1/a/1573:1575 | No text annotation Not in a motif group | geometric IL_5AOX_001 IL_95997.1 | |
| IL_6W2T_090 | 1/a/1604:1610, 1/a/1629:1635 | No text annotation Not in a motif group | homologous IL_8C3A_469 IL_10092.1 | |
| IL_6W2T_091 | 1/a/1700:1702, 1/a/1833:1836 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_6W2T_092 | 1/a/1702:1705, 1/a/1829:1833 | No text annotation Not in a motif group | homologous IL_4V88_464 IL_99670.1 | |
| IL_6W2T_093 | 1/a/1706:1708, 1/a/1826:1828 | No text annotation Not in a motif group | geometric IL_5MWI_007 IL_95997.1 | |
| IL_6W2T_094 | 1/a/1708:1711, 1/a/1822:1826 | No text annotation Not in a motif group | ||
| IL_6W2T_095 | 1/a/1714:1716, 1/a/1817:1819 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6W2T_096 | 1/a/1717:1722, 1/a/1812:1816 | No text annotation Not in a motif group | ||
| IL_6W2T_097 | 1/a/1729:1731, 1/a/1803:1805 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_6W2T_098 | 1/a/1733:1736, 1/a/1798:1801 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_6W2T_099 | 1/a/1739:1741, 1/a/1793:1795 | UU cWW water inserted Not in a motif group | geometric IL_4E48_002 IL_95997.1 | |
| IL_6W2T_100 | 1/a/1742:1746, 1/a/1788:1792 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_6W2T_101 | 1/a/1750:1754, 1/a/1778:1784 | No text annotation Not in a motif group | ||
| IL_6W2T_102 | 1/a/1754:1756, 1/a/1777:1778 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_6W2T_103 | 1/a/1756:1758, 1/a/1774:1777 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6W2T_001 | 1/A/384:390, 1/A/401:408, 1/A/435:437 | No text annotation Not in a motif group | ||
| J3_6W2T_002 | 1/A/521:530, 1/A/547:554, 1/A/566:572 | No text annotation Not in a motif group | ||
| J3_6W2T_003 | 1/a/40:41, 1/a/481:487, 1/a/512:514 | No text annotation Not in a motif group | ||
| J3_6W2T_004 | 1/a/682:685, 1/a/917:922, 1/a/1022:1023 | No text annotation Not in a motif group | ||
| J3_6W2T_005 | 1/a/816:819, 1/a/829:831, 1/a/843:848 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_6W2T_006 | 1/a/938:941, 1/a/985:993, 1/a/1000:1004 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6W2T_007 | 1/a/1094:1096, 1/a/1136:1140, 1/a/1147:1151 | No text annotation Not in a motif group | ||
| J3_6W2T_008 | 1/a/1218:1221, 1/a/1645:1651, 1/a/1673:1680 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_6W2T_009 | 1/a/1225:1228, 1/a/1530:1532, 1/a/1638:1641 | No text annotation Not in a motif group | homologous J3_8C3A_039 NA | |
| J3_6W2T_010 | 1/a/1237:1244, 1/a/1255:1266, 1/a/1516:1520 | No text annotation Not in a motif group | ||
| J3_6W2T_011 | 1/a/1272:1277, 1/a/1320:1324, 1/a/1504:1510 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_6W2T_012 | 1/a/1340:1345, 1/a/1384:1389, 1/a/1481:1486 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_6W2T_013 | 1/a/1350:1351, 1/a/1360:1363, 1/a/1375:1379 | No text annotation Not in a motif group | ||
| J3_6W2T_014 | 1/a/1532:1536, 1/a/1597:1604, 1/a/1635:1638 | No text annotation Not in a motif group | homologous J3_4V88_041 NA |
Problematic loops
No problematic loops
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