RNA 3D Hub

JAR3D Query RF03064-3.48 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 2 Internal loop

Column numbers: 14-55, 129-131 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    A-CAAGAACU-------------------------------U*A-U  194

    
    U-AUAUCAAA-------------------------------C*G-G   83

    
    U-AUAUCAAA-------------------------------U*A-G   71

    
    C-ACAGCAAA-------------------------------C*G-G   43

    
    C-AUAUCAAA-------------------------------C*G-G   37

    
    A-CAAGGAAC-------------------------------U*A-U   29

    
    U-AUACAAA--------------------------------C*G-G   29

    
    C-AUAUCAAA-------------------------------U*A-G   27

    
    U-ACAUCAAA-------------------------------C*G-G   26

    
    U-ACAGCAAA-------------------------------C*G-G   25

    
    U-AUAUAAA--------------------------------C*G-G   25

    
    U-AUACCAAA-------------------------------C*G-G   24

    
    A-CAAGAACC-------------------------------U*A-U   22

    
    A-CUAGAACU-------------------------------U*A-U   22

    
    U-AUACAAA--------------------------------C*G-A   20

    
    A-CAGGAACU-------------------------------U*A-U   19

    
    U-AUAGCAAA-------------------------------C*G-G   18

    
    C-AUACAAAA-------------------------------U*A-G   14

    
    U-AUAGCAAA-------------------------------U*A-G   14

    
    U-ACAUCAAA-------------------------------U*A-G   13

    
    C-AUACAAA--------------------------------C*G-G   11

    
    U-ACAUAAA--------------------------------C*G-G   11

    
    C-ACAUCAAA-------------------------------C*G-G   10

    
    C-ACAUCAAA-------------------------------U*A-G   10

    
    C-AUACCAAA-------------------------------C*G-G   10

    
    U-AUAUUAAA-------------------------------C*G-G   10

    
    C-AAACAAA--------------------------------C*G-G   10

    
    G-ACACCAAA-------------------------------C*G-C    9

    
    U-AUAUCAAA-------------------------------G*U-G    9

    
    A-CACGAACU-------------------------------U*A-U    8

    
    A-CUAGAACU-------------------------------U*G-U    8

    
    U-AUAACAAA-------------------------------U*A-G    8

    
    U-AUAUCAAA-------------------------------C*G-A    8

    
    A-CCAGAACU-------------------------------U*A-U    7

    
    C-ACACCAAA-------------------------------U*A-G    7

    
    U-ACACCAAA-------------------------------U*A-G    7

    
    U-AUACCAAA-------------------------------U*A-G    7

    
    C-AAAGAAA--------------------------------C*G-G    7

    
    C-AUAUCAA--------------------------------C*G-G    7

    
    A-AAAACAAA-------------------------------U*A-U    6

    
    A-CAAAAAAA-------------------------------U*A-U    6

    
    A-GAAGAACU-------------------------------U*A-U    6

    
    C-AUAAAAAA-------------------------------C*G-G    6

    
    C-AUAAAAAA-------------------------------U*A-G    6

    
    C-AUAACAAA-------------------------------U*A-G    6

    
    G-AUACCAAA-------------------------------C*G-C    6

    
    U-ACACAAA--------------------------------C*G-G    6

    
    A-AAAGAAAA-------------------------------U*A-U    5

    
    A-CAAAAACC-------------------------------U*A-U    5

    
    A-CAAAAACU-------------------------------U*A-U    5

    
    A-CAAGGACC-------------------------------U*A-U    5

    
    A-CAUGAACU-------------------------------U*A-U    5

    
    A-CUUGAACU-------------------------------U*A-U    5

    
    U-ACAAAAAA-------------------------------C*G-A    5

    
    U-ACACCAAA-------------------------------C*G-G    5

    
    C-ACACCAA--------------------------------C*G-G    5

    
    U-UAAUAAU--------------------------------C*G-G    5

    
    ACUUAGGAUC-------------------------------U*A-U    4

    
    A-UAAAAAAA-------------------------------U*A-U    4

    
    C-AUACCAAA-------------------------------U*A-G    4

    
    G-AUACGAAA-------------------------------C*G-C    4

    
    U-ACACCAAA-------------------------------C*G-A    4

    
    U-AUACCAAA-------------------------------C*G-A    4

    
    U-AUAUCAAA-------------------------------G*G-G    4

    
    A-CAAAAAA--------------------------------U*A-U    4

    
    C-AAGGAAA--------------------------------C*G-G    4

    
    C-ACACCAAC-------------------------------C*GGG    3

    
    A-CAAGAAUU-------------------------------U*A-U    3

    
    A-CAUGGACC-------------------------------U*A-U    3

    
    A-CUAGGACC-------------------------------U*A-U    3

    
    A-UACAAAGA-------------------------------U*A-U    3

    
    C-AUAGCAAA-------------------------------C*G-G    3

    
    C-CUAUCAAA-------------------------------C*G-G    3

    
    G-AUAUCAAA-------------------------------C*G-C    3

    
    U-AGAUCAAA-------------------------------C*G-G    3

    
    U-AUAGAAAA-------------------------------C*G-G    3

    
    U-AUGUCAAA-------------------------------C*G-G    3

    
    U-CUAUCAAA-------------------------------U*A-G    3

    
    C-ACUCAAA--------------------------------C*G-G    3

    
    C-AUAAAAA--------------------------------U*A-G    3

    
    C-AUACAAA--------------------------------U*A-G    3

    
    C-AUACCAA--------------------------------C*G-G    3

    
    U-AAGAAAA--------------------------------U*A-A    3

    
    U-AAGACAA--------------------------------U*A-A    3

    
    U-AUAAAAA--------------------------------C*G-A    3

    
    U-AUAUAAA--------------------------------C*G-A    3

    
    U-GUACAAA--------------------------------C*G-A    3

    
    A-CAUAGUUGUUCCAACAUUGGUUGUUCCAACAUUGGAACUU*A-U    2

    
    C-AUAUCAAAA------------------------------C*G-G    2

    
    UAUAAUCAAA-------------------------------C*G-A    2

    
    A-AAAACCAU-------------------------------U*A-U    2

    
    A-CAAGAAAC-------------------------------U*A-U    2

    
    A-CAAGAGCU-------------------------------U*A-U    2

    
    A-CAAGGAAU-------------------------------U*A-U    2

    
    A-CAAUAACU-------------------------------U*A-U    2

    
    A-CACAACAA-------------------------------U*A-U    2

    
    A-CAUGGAUC-------------------------------U*A-U    2

    
    A-CGAGAACU-------------------------------U*A-U    2

    
    A-CUAGAACA-------------------------------U*A-U    2

    
    A-UACAAAAU-------------------------------U*A-U    2

    
    C-AAAAAAAA-------------------------------C*G-G    2

    
    C-ACACCAAA-------------------------------C*G-G    2

    
    C-AUAACAAA-------------------------------C*G-G    2

    
    C-GUAUCAAA-------------------------------C*G-G    2

    
    G-ACACCAGA-------------------------------C*G-C    2

    
    G-ACACGAAA-------------------------------C*G-C    2

    
    G-AUACCAGA-------------------------------C*G-C    2

    
    U-AAACCAAA-------------------------------C*G-G    2

    
    U-AAAGCAAA-------------------------------C*G-G    2

    
    U-AAAUCAAA-------------------------------C*G-G    2

    
    U-AAGCCAAA-------------------------------C*G-G    2

    
    U-AGAACAAA-------------------------------C*G-G    2

    
    U-AUAACAAA-------------------------------C*G-G    2

    
    U-AUAGUAAA-------------------------------U*A-G    2

    
    U-AUAUAAAA-------------------------------C*G-G    2

    
    U-AUAUAAAA-------------------------------G*U-G    2

    
    U-AUAUCAAA-------------------------------C*A-G    2

    
    U-AUAUCAAA-------------------------------U*G-G    2

    
    U-CUACCAAA-------------------------------U*A-G    2

    
    U-GCACCAAA-------------------------------C*G-A    2

    
    U-GCAUCAAA-------------------------------C*G-G    2

    
    U-GUAAGAAA-------------------------------U*U-G    2

    
    U-GUAUCAAA-------------------------------C*G-A    2

    
    U-GUAUCAAA-------------------------------C*G-G    2

    
    A-AAACAAA--------------------------------U*A-U    2

    
    C-AAAAAAA--------------------------------C*G-G    2

    
    C-AAAACAA--------------------------------C*G-G    2

    
    C-AAUCAAA--------------------------------C*G-G    2

    
    C-ACACAAA--------------------------------C*G-G    2

    
    C-ACAUAAA--------------------------------C*G-G    2

    
    C-ACAUCAA--------------------------------C*G-G    2

    
    C-AUACAAG--------------------------------C*G-G    2

    
    C-AUAUAAA--------------------------------C*G-G    2

    
    C-GAAAAAA--------------------------------C*G-G    2

    
    C-GGACAAA--------------------------------C*G-G    2

    
    G-AAACCAG--------------------------------C*G-A    2

    
    G-AGACAAA--------------------------------C*G-C    2

    
    U-AAACAAA--------------------------------C*G-A    2

    
    U-AAGCAAA--------------------------------C*G-A    2

    
    U-ACACCAA--------------------------------C*G-A    2

    
    U-ACAUAAA--------------------------------C*G-A    2

    
    U-AUAAAAA--------------------------------C*G-G    2

    
    U-AUAAAAG--------------------------------C*G-A    2

    
    U-AUAUAAG--------------------------------C*G-G    2

    
    U-GCACAAA--------------------------------C*G-A    2

    
    A-CAAAAA---------------------------------U*A-U    2

    
    U-AGACCA---------------------------------C*G-A    2

    
    A-CAUAGUUGUUCCA-ACAU--------------UGGAACUU*A-U    1

    
    A-CAUUGUUGUUCCA----ACAU-----------UGGAACUU*A-U    1

    
    C-AAACAAAA--------------------GUA--------C*G-G    1

    
    U-AUAUCAUC------AA----------------------AC*G-G    1

    
    CAUACUCAAA------------------------------CC*G-G    1

    
    U-UUAUAUCA-------AA----------------------C*A-G    1

    
    U-UUAUAUCAAA-----------------------------C*A-G    1

    
    A-CUUAGGAU------------------------------CU*A-U    1

    
    A-CUUAGGAUC------------------------------U*A-U    1

    
    A-CUUUGGAUC------------------------------U*A-U    1

    
    A-UAAAAAAA------------------------------AU*A-U    1

    
    C-AUAAAAAA------------------------------AC*G-G    1

    
    C-AUAUCAAA-------------------------------C*GGG    1

    
    U-AUAAAAAAA------------------------------C*G-A    1

    
    U-AUAGAAAAA------------------------------C*G-G    1

    
    U-AUAGCAAA-------------------------------C*GGA    1

    
    U-AUAUACAAA------------------------------C*G-G    1

    
    U-AUAUCAAA------------------------------AC*G-G    1

    
    UUACAUCAAA-------------------------------C*G-G    1

    
    A-AAAACAAA-------------------------------G*A-U    1

    
    A-AAAGAACU-------------------------------U*A-U    1

    
    A-AGACCAAA-------------------------------C*G-A    1

    
    A-AGACCGAA-------------------------------C*G-A    1

    
    A-AUAACAAA-------------------------------U*A-G    1

    
    A-AUAGAACU-------------------------------U*A-U    1

    
    A-CAAAAAAC-------------------------------U*A-U    1

    
    A-CAAAACAA-------------------------------U*A-U    1

    
    A-CAACAAAU-------------------------------U*A-U    1

    
    A-CAAGAACC-------------------------------A*A-U    1

    
    A-CAAGAUCU-------------------------------U*A-U    1

    
    A-CAAGUACU-------------------------------U*A-U    1

    
    A-CAAUAAAC-------------------------------U*A-U    1

    
    A-CACAAACC-------------------------------U*A-U    1

    
    A-CAGGAACC-------------------------------U*A-U    1

    
    A-CAGGGACC-------------------------------U*A-U    1

    
    A-CAUAACAA-------------------------------U*A-U    1

    
    A-CAUAAUAA-------------------------------U*A-U    1

    
    A-CAUGAACC-------------------------------U*A-U    1

    
    A-CAUGAAUC-------------------------------U*A-U    1

    
    A-CGUGAACU-------------------------------U*A-U    1

    
    A-CUAGAAAU-------------------------------U*A-U    1

    
    A-CUCGAACU-------------------------------U*A-U    1

    
    A-CUGGAACU-------------------------------U*A-U    1

    
    A-CUUGAACA-------------------------------U*A-U    1

    
    A-CUUGAACU-------------------------------U*G-U    1

    
    A-GAAGAACU-------------------------------U*G-U    1

    
    A-GAUGAACU-------------------------------U*A-U    1

    
    A-UAAGAACU-------------------------------U*A-U    1

    
    A-UAAGAAUU-------------------------------U*A-U    1

    
    A-UAAGGAAC-------------------------------U*A-U    1

    
    A-UACAACAA-------------------------------U*A-U    1

    
    A-UACAACGA-------------------------------U*A-U    1

    
    A-UAGGAAAA-------------------------------U*A-U    1

    
    A-UAUAAAGA-------------------------------U*A-U    1

    
    A-UAUAACAA-------------------------------U*A-U    1

    
    A-UUAGAACU-------------------------------U*G-U    1

    
    C-AAACAAAA-------------------------------A*G-G    1

    
    C-ACACAAAA-------------------------------C*G-G    1

    
    C-ACAUCAAA-------------------------------C*A-G    1

    
    C-AUAUCAAA-------------------------------U*A-C    1

    
    C-AUAUCAAA-------------------------------U*G-G    1

    
    C-AUAUCCAA-------------------------------U*A-G    1

    
    C-AUAUUAAA-------------------------------U*A-G    1

    
    C-AUGCAAAA-------------------------------U*A-G    1

    
    C-AUGCCAAA-------------------------------U*A-G    1

    
    C-GAAAAAAA-------------------------------C*G-G    1

    
    C-GCAUCAAA-------------------------------C*G-G    1

    
    C-GGACCAAA-------------------------------C*G-G    1

    
    C-GUAACAAA-------------------------------C*G-G    1

    
    G-ACGCCAAA-------------------------------C*G-C    1

    
    G-AUACAAAA-------------------------------C*G-C    1

    
    G-UGACCAAG-------------------------------C*G-G    1

    
    U-AAAACAAA-------------------------------C*G-G    1

    
    U-AAAUCAAA-------------------------------A*U-G    1

    
    U-AAUAUAAA-------------------------------C*G-A    1

    
    U-ACAACAAA-------------------------------C*G-G    1

    
    U-ACACAAAA-------------------------------U*A-G    1

    
    U-ACAGCAAA-------------------------------U*A-G    1

    
    U-ACAGUAAA-------------------------------C*G-G    1

    
    U-ACAUAAAA-------------------------------C*G-G    1

    
    U-ACAUCAAA-------------------------------C*G-A    1

    
    U-ACAUUAAA-------------------------------C*G-A    1

    
    U-ACCCCAAA-------------------------------C*G-G    1

    
    U-ACGCCAAA-------------------------------C*G-A    1

    
    U-AGAGCAAA-------------------------------C*G-G    1

    
    U-AGAUCAAA-------------------------------U*A-G    1

    
    U-AUAACAAA-------------------------------C*G-A    1

    
    U-AUAAGAAA-------------------------------C*G-G    1

    
    U-AUAAGAAA-------------------------------G*U-G    1

    
    U-AUAAGAAA-------------------------------U*U-G    1

    
    U-AUAAUAAA-------------------------------U*A-G    1

    
    U-AUACAAAA-------------------------------U*A-G    1

    
    U-AUACCAAA-------------------------------G*G-G    1

    
    U-AUACCAAA-------------------------------G*U-G    1

    
    U-AUACCAAA-------------------------------U*A-A    1

    
    U-AUACUAAA-------------------------------U*A-A    1

    
    U-AUAGCGAA-------------------------------U*A-G    1

    
    U-AUAUAAAG-------------------------------C*G-A    1

    
    U-AUAUCAAA-------------------------------C*G-C    1

    
    U-AUAUCAAA-------------------------------U*U-G    1

    
    U-AUAUCACA-------------------------------U*A-G    1

    
    U-AUAUUAAA-------------------------------C*G-A    1

    
    U-AUAUUAAA-------------------------------U*A-G    1

    
    U-AUGACAAA-------------------------------C*G-G    1

    
    U-AUGACAAA-------------------------------U*A-G    1

    
    U-AUGCCAAA-------------------------------C*G-A    1

    
    U-AUGCCAAA-------------------------------U*A-G    1

    
    U-AUGGCAAA-------------------------------C*G-G    1

    
    U-AUUUGACC-------------------------------C*G-A    1

    
    U-CUAUCAAA-------------------------------C*G-A    1

    
    U-GCAUCAAA-------------------------------U*A-G    1

    
    U-GUAUCAAA-------------------------------G*G-G    1

    
    U-GUAUCAUA-------------------------------C*A-G    1

    
    U-UAUACAAA-------------------------------C*G-A    1

    
    A-AAAAGAA--------------------------------U*A-U    1

    
    A-AGUUUAU--------------------------------U*G-U    1

    
    A-CAAAACA--------------------------------U*A-U    1

    
    A-CAAAACU--------------------------------U*A-U    1

    
    A-CAAGCAA--------------------------------U*A-U    1

    
    A-GAAGACC--------------------------------U*A-U    1

    
    A-UAAAAAA--------------------------------U*A-U    1

    
    A-UAAAAAU--------------------------------U*A-U    1

    
    C-AAACAAA--------------------------------A*G-G    1

    
    C-AAACAAA--------------------------------C*A-G    1

    
    C-AAACAAG--------------------------------U*A-G    1

    
    C-AAACAGA--------------------------------U*A-G    1

    
    C-AAAGCAA--------------------------------C*G-G    1

    
    C-AAAUAAA--------------------------------C*G-G    1

    
    C-AACCAAA--------------------------------C*G-G    1

    
    C-AACGAAA--------------------------------C*G-G    1

    
    C-AAGACCA--------------------------------C*G-G    1

    
    C-ACACAAA--------------------------------U*A-G    1

    
    C-ACAUCCA--------------------------------C*G-G    1

    
    C-ACCCCAA--------------------------------C*G-G    1

    
    C-ACGCAAA--------------------------------C*G-G    1

    
    C-AGACAAA--------------------------------C*G-G    1

    
    C-AUAAAAA--------------------------------C*G-G    1

    
    C-AUACCAA--------------------------------U*G-G    1

    
    C-AUACGGA--------------------------------C*G-G    1

    
    C-GCAUCCA--------------------------------C*G-G    1

    
    C-GGACAAG--------------------------------C*G-G    1

    
    C-GUACUAA--------------------------------C*A-G    1

    
    U-AAAACAA--------------------------------U*A-A    1

    
    U-AAAACCA--------------------------------C*G-A    1

    
    U-AAAAUCA--------------------------------C*G-A    1

    
    U-AAACAAA--------------------------------C*G-G    1

    
    U-AAACAAA--------------------------------U*A-A    1

    
    U-AAACAAA--------------------------------U*A-G    1

    
    U-AAAUAAA--------------------------------C*G-G    1

    
    U-AAGAAAA--------------------------------C*G-A    1

    
    U-AAGAACC--------------------------------C*G-A    1

    
    U-AAGACAA--------------------------------U*A-G    1

    
    U-AAGACCA--------------------------------C*G-A    1

    
    U-ACAAAAA--------------------------------C*G-A    1

    
    U-ACAACCA--------------------------------C*G-A    1

    
    U-ACACAAA--------------------------------U*G-G    1

    
    U-ACAGAAA--------------------------------C*G-A    1

    
    U-ACAUCAA--------------------------------C*G-G    1

    
    U-ACGAAAA--------------------------------C*G-A    1

    
    U-AUACAAA--------------------------------U*G-A    1

    
    U-AUACAAG--------------------------------C*G-G    1

    
    U-AUAUAAA--------------------------------C*U-A    1

    
    U-AUAUCAA--------------------------------C*G-G    1

    
    U-AUAUCAA--------------------------------U*A-G    1

    
    U-AUCUAAA--------------------------------C*G-G    1

    
    U-AUGAAAC--------------------------------C*G-A    1

    
    U-GUAAAAA--------------------------------C*G-A    1

    
    U-GUAACCA--------------------------------C*G-A    1

    
    U-GUACAAA--------------------------------U*A-G    1

    
    U-GUAUAAA--------------------------------C*G-G    1

    
    U-GUGCAAA--------------------------------C*G-A    1

    
    C-AAA--AAA-------------------------------U*A-G    1

    
    C-AAAAAA---------------------------------C*G-G    1

    
    C-AUA--AAA-------------------------------U*A-G    1

    
    C-AUAAAA---------------------------------U*A-G    1

    
    G-AUGAGC---------------------------------C*G-C    1

    
    U-AAA--AAA-------------------------------C*G-A    1

    
    U-AACCAA---------------------------------C*G-A    1

    
    U-AUACA--A-------------------------------C*G-A    1

    
    U-GAACGA---------------------------------C*G-A    1

    
    A-AAU---A-------------------------------GC*G-U    1

    
    U-----UAA-------------------------------UC*G-G    1

    
    Omitted sequenced and counts

    
    A-CACGAACU-------------------------------U*A-N    1

    
    C-ANACAAU--------------------------------C*G-G    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_45944.2

Basepair signature:
cWW-L-L-tWH-L-L-L-cWW

3.95 -56.42 8 5

2

Motif group IL_46112.1

Basepair signature:
cWW-L-L-L-L-L-cWW

3.39 -75.58 7 5

3

Motif group IL_58960.1

Basepair signature:
cWW-L-L-tWW-L-L-L-cWW

3.03 -66.00 7 4

4

Motif group IL_27393.6

Basepair signature:
cWW-L-L-L-L-L-L-cWW

1.13 -84.81 6 4

5

Motif group IL_45034.1

Basepair signature:
cWW-L-L-L-L-L-L-cWW

0.71 -150.14 8 5

6

Motif group IL_55662.1

Basepair signature:
cWW-L-L-L-L-L-L-L-L-L-cWW

0.56 -59.82 8 5

7

Motif group IL_15861.5

Basepair signature:
cWW-L-L-L-cSH-L-cWW

0.42 -143.40 6 4

SSU/LSU pseudoknot

8

Motif group IL_74271.1

Basepair signature:
cWW-L-L-L-tWH-L-L-L-cWW

0.28 -63.05 9 5

9

Motif group IL_19569.2

Basepair signature:
cWW-L-L-L-L-cWW

0.28 -149.47 6 4

10

Motif group IL_79734.1

Basepair signature:
cWW-R-R-R-R-cWW

0.21 -137.09 6 3

11

Motif group IL_08939.1

Basepair signature:
cWW-L-L-L-L-cWW

0.21 -158.46 7 4

12

Motif group IL_01560.1

Basepair signature:
cWW-L-L-L-cSH-L-L-cWW

0.14 -71.15 9 5

13

Motif group IL_51877.1

Basepair signature:
cWW-L-L-tWW-L-L-L-cWS-cWW

0.14 -95.38 8 4

14

Motif group IL_62827.1

Basepair signature:
cWW-R-cWH-R-R-R-cWW

0.07 -133.63 7 5

cWH basepair with bulged bases

15

Motif group IL_76195.1

Basepair signature:
cWW-L-L-cWW

0.07 -279.06 7 4

16

Motif group IL_03470.1

Basepair signature:
cWW-R-R-R-cWW

0.07 -285.18 9 6

17

Motif group IL_53738.1

Basepair signature:
cWW-R-R-R-R-R-R-R-R-R-R-cWW

0.00 -106.95 8 6

Pseudoknot

18

Motif group IL_54896.1

Basepair signature:
cWW-L-L-L-L-L-L-tSS-cWW

0.00 -108.21 8 6

19

Motif group IL_19023.1

Basepair signature:
cWW-cHW-L-L-L-L-L-L-L-L-cWW

0.00 -109.67 8 6

20

Motif group IL_45481.1

Basepair signature:
cWW-L-R-cHW-L-L-tSW-L-cWW

0.00 -133.54 11 8

21

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-L-L-L-L-cWW

0.00 -142.54 10 8

Reverse kink-turn related

22

Motif group IL_89731.1

Basepair signature:
cWW-R-tWH-R-R-R-cWW

0.00 -143.86 7 4

23

Motif group IL_97253.1

Basepair signature:
cWW-L-R-R-R-R-R-R-R-L-L-cWW

0.00 -150.18 9 8

24

Motif group IL_64842.1

Basepair signature:
cWW-L-L-L-tWH-cSH-cWW

0.00 -159.48 6 5

25

Motif group IL_63750.1

Basepair signature:
cWW-tSS-cSS-tWW-L-tSH-R-R-cWW

0.00 -162.18 8 6

26

Motif group IL_80884.1

Basepair signature:
cWW-cWW-R-R-R-R-cWW

0.00 -165.28 7 6

27

Motif group IL_39507.1

Basepair signature:
cWW-L-R-L-L-L-cWW

0.00 -171.44 8 6

28

Motif group IL_61300.1

Basepair signature:
cWW-cSS-L-tHW-tSS-L-L-L-L-L-L-cWW

0.00 -175.50 10 8

29

Motif group IL_95811.1

Basepair signature:
cWW-L-L-L-cWW-L-bif-cWW

0.00 -175.79 7 5

Vitamin B12 Aptamer

30

Motif group IL_74184.1

Basepair signature:
cWW-L-L-L-L-L-tHS-cWW

0.00 -176.39 10 8

31

Motif group IL_93585.1

Basepair signature:
cWW-L-L-L-tWH-cSH-L-cWW-cWW

0.00 -188.44 8 6

Kink-turn related

32

Motif group IL_71960.4

Basepair signature:
cWW-cSH-cWW

0.00 -199.44 6 4

Minor groove platform

33

Motif group IL_79393.7

Basepair signature:
cWW-L-R-R-L-L-L-L-cWW

0.00 -206.11 8 6

34

Motif group IL_89055.1

Basepair signature:
cWW-cWW-L-R-R-L-L-L-L-L-cWW-cWW

0.00 -208.56 13 10

35

Motif group IL_46401.1

Basepair signature:
cWW-L-L-L-L-tHH-cWW

0.00 -218.78 9 6

36

Motif group IL_00559.1

Basepair signature:
cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-cWW-cWW

0.00 -220.10 15 13

37

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-L-L-L-bif-cWW

0.00 -223.87 9 7

Reverse turn

38

Motif group IL_56867.1

Basepair signature:
cWW-L-R-R-L-L-cSS-L-cWW-cWW

0.00 -224.42 11 10

39

Motif group IL_90348.1

Basepair signature:
cWW-R-R-R-cWW

0.00 -229.04 7 4

40

Motif group IL_15978.1

Basepair signature:
cWW-R-cSW-R-R-tHS-cWW

0.00 -230.23 9 6

41

Motif group IL_80412.1

Basepair signature:
cWW-R-R-R-R-R-tWS-cWW

0.00 -231.50 10 8

42

Motif group IL_90157.1

Basepair signature:
cWW-L-L-L-L-tHH-cWS-cWW

0.00 -233.21 9 7

43

Motif group IL_70480.1

Basepair signature:
cWW-L-R-L-tHW-L-L-cWW

0.00 -234.95 9 7

44

Motif group IL_69457.1

Basepair signature:
cWW-L-L-L-L-L-tHH-tHS-cWW

0.00 -235.21 7 6

45

Motif group IL_60695.5

Basepair signature:
cWW-L-R-R-R-R-cWW

0.00 -236.22 8 7

46

Motif group IL_82426.3

Basepair signature:
cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW

0.00 -242.65 11 9

Part of G-quadruplex

47

Motif group IL_01502.1

Basepair signature:
cWW-L-R-R-L-L-L-L-cWW-cWW

0.00 -242.98 10 9

48

Motif group IL_65876.1

Basepair signature:
cWW-tSH-L-R-R-R-cWW

0.00 -246.29 9 8

Kink-turn

49

Motif group IL_39287.1

Basepair signature:
cWW-tSH-tHS-tSS-L-R-R-R-R-R-cWW

0.00 -247.71 12 9

Kink-turn related

50

Motif group IL_22821.1

Basepair signature:
cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW

0.00 -259.08 13 12

Pseudoknot

51

Motif group IL_09732.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -259.86 8 7

52

Motif group IL_17971.1

Basepair signature:
cWW-tWW-L-tWW-L-cWW

0.00 -262.59 11 9

53

Motif group IL_85630.1

Basepair signature:
cWW-cWW-L-R-R-R-R-R-L-tHS-cWW

0.00 -272.04 10 10

54

Motif group IL_74736.1

Basepair signature:
cWW-tSH-L-R-R-L-cWW

0.00 -273.67 11 8

55

Motif group IL_61084.1

Basepair signature:
cWW-L-R-R-L-L-L-cWW

0.00 -275.94 10 8

56

Motif group IL_69091.1

Basepair signature:
cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW

0.00 -277.33 11 10

57

Motif group IL_19724.1

Basepair signature:
cWW-cSH-R-R-cWW

0.00 -282.45 7 5

58

Motif group IL_65320.1

Basepair signature:
cWW-L-R-R-R-L-tHW-L-R-R-L-cWW

0.00 -289.79 12 10

59

Motif group IL_73399.1

Basepair signature:
cWW-L-R-R-R-cWW

0.00 -303.45 8 7

60

Motif group IL_49655.1

Basepair signature:
cWW-tWW-L-R-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -308.86 17 15

61

Motif group IL_69979.1

Basepair signature:
cWW-L-R-R-R-R-L-L-L-cWW

0.00 -308.88 12 10

62

Motif group IL_20463.1

Basepair signature:
cWW-L-R-R-R-cWH-R-tHH-cSH-tWH-tHS-cWW

0.00 -310.08 10 10

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

63

Motif group IL_96878.1

Basepair signature:
cWW-tSH-L-R-R-L-L-L-cWW

0.00 -310.32 11 8

64

Motif group IL_04667.1

Basepair signature:
cWW-tWH-cSW-L-R-R-L-tHS-cWW

0.00 -311.31 12 11

Kink-turn related

65

Motif group IL_92343.1

Basepair signature:
cWW-L-R-R-R-L-L-cWW

0.00 -313.20 9 8

66

Motif group IL_50789.1

Basepair signature:
cWW-L-L-L-cWW

0.00 -316.45 8 6

67

Motif group IL_47108.1

Basepair signature:
cWW-tHH-L-R-R-R-cWW

0.00 -317.98 10 7

68

Motif group IL_77870.1

Basepair signature:
cWW-bif-L-L-L-tHS-cWW-cWW

0.00 -318.42 9 7

69

Motif group IL_03420.1

Basepair signature:
cWW-R-cSH-tWH-tSH-tHS-cWW

0.00 -321.86 10 8

tSH-tHS-tHW

70

Motif group IL_39443.1

Basepair signature:
cWW-L-L-tWH-L-R-R-L-cWW

0.00 -323.51 11 8

71

Motif group IL_46732.1

Basepair signature:
cWW-R-R-tHS-cWW

0.00 -323.77 9 7

72

Motif group IL_31890.1

Basepair signature:
cWW-L-R-R-L-L-cWW

0.00 -325.95 10 8

73

Motif group IL_33557.1

Basepair signature:
cWW-cWW-tHH-L-R-R-R-L-L-L-cWW

0.00 -328.96 11 9

Kink-turn related

74

Motif group IL_12750.1

Basepair signature:
cWW-L-R-cWW-L-R-R-R-R-L-L-cWW

0.00 -330.88 14 11

75

Motif group IL_65055.1

Basepair signature:
cWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -335.73 17 15

76

Motif group IL_61275.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -336.36 9 8

77

Motif group IL_34626.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -337.53 7 5

78

Motif group IL_69573.1

Basepair signature:
cWW-L-R-tWH-L-R-R-R-R-L-L-tWW-cWW

0.00 -337.87 11 10

79

Motif group IL_96942.1

Basepair signature:
cWW-L-R-R-R-tHW-tHW-bif-cWW

0.00 -338.47 12 8

80

Motif group IL_74051.1

Basepair signature:
cWW-tSS-L-tSH-tHS-L-cWW

0.00 -338.89 9 7

Kink-turn

81

Motif group IL_93094.1

Basepair signature:
cWW-tSH-tHH-R-R-R-cWW

0.00 -341.97 6 5

Reverse kink-turn

82

Motif group IL_80355.1

Basepair signature:
cWW-tWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -343.59 17 15

83

Motif group IL_09061.3

Basepair signature:
cWW-cSW-cWW

0.00 -344.66 6 4

Major groove minor groove platform; mini C-loop

84

Motif group IL_68057.1

Basepair signature:
cWW-tSS-L-tSH-tHS-cWW-cWW

0.00 -348.76 9 7

Kink-turn

85

Motif group IL_58390.1

Basepair signature:
cWW-bif-tSW-L-L-L-cWW-cSW-R-cWW

0.00 -349.97 12 10

Minor groove platform related

86

Motif group IL_32181.1

Basepair signature:
cWW-cWW-cWW-L-cSW-L-R-R-R-cWW

0.00 -352.02 14 12

87

Motif group IL_29978.3

Basepair signature:
cWW-L-L-L-tHS-cWW

0.00 -353.41 7 5

88

Motif group IL_11882.1

Basepair signature:
cWW-L-R-R-tHW-tHW-L-R-cWW

0.00 -358.95 11 9

89

Motif group IL_20245.1

Basepair signature:
cWW-L-R-R-R-R-L-L-L-L-L-L-L-L-L-L-L-L-cWW-L-R-cWW

0.00 -360.12 18 16

90

Motif group IL_17470.4

Basepair signature:
cWW-R-tHW-tHW-tWW-cWW

0.00 -361.39 8 7

tHW-tHW cross-strand stack

91

Motif group IL_95993.1

Basepair signature:
cWW-R-tSS-tWW-tWW-cWW

0.00 -361.55 11 9

Kink-turn related

92

Motif group IL_89587.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -364.05 10 7

93

Motif group IL_04736.1

Basepair signature:
cWW-tSW-L-R-R-L-tWS-cWW

0.00 -364.32 12 10

94

Motif group IL_36582.1

Basepair signature:
cWW-L-R-L-tHH-L-tWH-tHS-cWW

0.00 -367.84 9 8

8x6 Sarcin-Ricin with inserted A; G-bulge

95

Motif group IL_67474.2

Basepair signature:
cWW-R-R-cWW

0.00 -369.65 7 5

96

Motif group IL_42521.1

Basepair signature:
cWW-L-L-cWW-cWW

0.00 -370.76 9 7

97

Motif group IL_42092.1

Basepair signature:
cWW-tSH-L-L-L-cWW

0.00 -372.18 8 6

Isolated basepair with bulged bases

98

Motif group IL_98876.1

Basepair signature:
cWW-cWW-L-R-R-tHW-bif-cWW

0.00 -374.90 12 9

99

Motif group IL_58346.1

Basepair signature:
cWW-cSH-R-R-R-L-cWW-cWW

0.00 -376.32 9 8

100

Motif group IL_38044.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW

0.00 -380.30 16 14

101

Motif group IL_02284.2

Basepair signature:
cWW-L-R-cWW

0.00 -380.54 7 5

102

Motif group IL_92604.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -381.62 7 6

103

Motif group IL_70627.1

Basepair signature:
cWW-R-R-tWH-L-R-cWW

0.00 -381.75 10 9

UAA/GAN related

104

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-L-tSH-tHS-tHS-cWW

0.00 -383.29 9 8

Kink-turn

105

Motif group IL_95688.1

Basepair signature:
cWW-L-cSS-cSS-L-R-cWW

0.00 -383.75 11 8

106

Motif group IL_55658.1

Basepair signature:
cWW-L-L-cWW

0.00 -385.49 7 6

107

Motif group IL_88269.2

Basepair signature:
cWW-tSH-tHW-L-cSH-R-cWW

0.00 -393.80 9 8

6x5 Sarcin-Ricin; G-bulge

108

Motif group IL_51366.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW

0.00 -395.17 16 14

109

Motif group IL_82988.1

Basepair signature:
cWW-cWW-L-L-tHS-cWW

0.00 -397.21 9 7

110

Motif group IL_70801.1

Basepair signature:
cWW-L-R-R-tWW-cWW-cWW-cWW

0.00 -401.56 10 9

111

Motif group IL_68780.2

Basepair signature:
cWW-tSH-tSH-tHS-tSS-R-cWW

0.00 -401.87 8 7

Kink-turn

112

Motif group IL_47002.1

Basepair signature:
cWW-tSH-L-L-tHH-cWW

0.00 -401.90 9 8

113

Motif group IL_39371.2

Basepair signature:
cWW-cWW

0.00 -403.64 7 4

114

Motif group IL_55666.1

Basepair signature:
cWW-R-cWH-L-L-L-cWW

0.00 -404.85 8 6

115

Motif group IL_36973.4

Basepair signature:
cWW-tSH-L-R-R-R-L-L-cWW-cWW

0.00 -406.70 9 9

116

Motif group IL_94351.1

Basepair signature:
cWW-tSH-L-R-L-tHS-cWW

0.00 -408.79 10 9

117

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -410.93 10 8

Kink-turn related

118

Motif group IL_66497.1

Basepair signature:
cWW-tWH-L-R-tHS-bif-cWW

0.00 -412.35 11 9

119

Motif group IL_35310.1

Basepair signature:
cWW-R-R-cWW

0.00 -412.36 9 6

Bulged stacked bases

120

Motif group IL_01963.1

Basepair signature:
cWW-L-R-R-R-cSH-cWW

0.00 -412.78 13 10

121

Motif group IL_78030.1

Basepair signature:
cWW-L-R-R-cWW

0.00 -413.05 10 8

122

Motif group IL_37722.1

Basepair signature:
cWW-cWW-tSH-tWH-tHS-tSS-R-cWW

0.00 -413.76 10 9

123

Motif group IL_68741.1

Basepair signature:
cWW-R-R-R-cWW

0.00 -422.30 8 5

124

Motif group IL_23544.2

Basepair signature:
cWW-L-R-R-cWW

0.00 -425.40 8 6

125

Motif group IL_53318.1

Basepair signature:
cWW-cWW-tWH-tSH-tHS-cWW

0.00 -428.08 10 8

126

Motif group IL_34780.1

Basepair signature:
cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW

0.00 -434.38 13 11

Kink-turn

127

Motif group IL_89197.1

Basepair signature:
cWW-tSH-R-tHH-tHS-cWW

0.00 -434.49 8 7

128

Motif group IL_29549.7

Basepair signature:
cWW-tSH-tSH-tHS-tSS-R-cWW

0.00 -435.20 8 6

Kink-turn

129

Motif group IL_84315.1

Basepair signature:
cWW-tHS-cWS-R-tSW-R-R-cWW

0.00 -438.80 8 5

130

Motif group IL_05523.1

Basepair signature:
cWW-L-R-cWW-cSW-cSH-cWW

0.00 -445.16 11 9

131

Motif group IL_60171.1

Basepair signature:
cWW-L-tWH-R-R-R-cWW

0.00 -449.41 9 6

Major groove platform; stack outside cWW

132

Motif group IL_94878.1

Basepair signature:
cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW

0.00 -449.56 21 20

133

Motif group IL_89193.1

Basepair signature:
cWW-L-R-R-cSH-tWH-tHS-cWW

0.00 -450.70 11 9

5x5 Sarcin-Ricin with intercalated A; G-bulge

134

Motif group IL_96596.1

Basepair signature:
cWW-tSH-tHW-L-R-cWW-cWW

0.00 -453.08 9 8

135

Motif group IL_83162.2

Basepair signature:
cWW-tSH-L-R-L-tHH-cWW

0.00 -455.56 9 8

tHS double platform

136

Motif group IL_61017.1

Basepair signature:
cWW-L-R-R-R-cWW

0.00 -455.84 9 7

137

Motif group IL_06300.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -456.32 11 8

138

Motif group IL_09129.1

Basepair signature:
cWW-tWH-tWH-L-R-L-tWW-cWW

0.00 -460.15 10 8

139

Motif group IL_41414.1

Basepair signature:
cWW-cWW-R-R-cSH-R-bif-tWH-R-R-R-R-cWS-cWW

0.00 -463.51 12 10

140

Motif group IL_29509.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -466.24 11 10

8x7 Sarcin-Ricin; G-bulge

141

Motif group IL_34590.1

Basepair signature:
cWW-L-R-R-R-R-L-L-tHH-cSH-tWH-tHS-cWW

0.00 -467.44 13 12

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

142

Motif group IL_13730.9

Basepair signature:
cWW-cWW

0.00 -470.10 7 6

Multiple bulged bases

143

Motif group IL_58819.1

Basepair signature:
cWW-L-R-R-tWH-L-tSS-tHW-R-tHH-cWW-cWW

0.00 -476.19 12 11

144

Motif group IL_29821.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -477.39 9 8

UAA/GAN with extra stack

145

Motif group IL_27900.1

Basepair signature:
cWW-tSH-cWW

0.00 -479.69 7 6

Minor groove platform

146

Motif group IL_24606.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-L-cWW

0.00 -482.55 12 9

8x6 Sarcin-Ricin with inserted Y; G-bulge

147

Motif group IL_19389.4

Basepair signature:
cWW-L-cSH-cWW

0.00 -482.94 7 6

Major groove platform with intercalated tWH

148

Motif group IL_68633.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-L-cWW-cWW

0.00 -484.80 13 10

9x7 Sarcin-Ricin with inserted C; G-bulge

149

Motif group IL_44325.1

Basepair signature:
cWW-cWH-R-cWW

0.00 -486.26 10 7

150

Motif group IL_51265.1

Basepair signature:
cWW-tSS-L-tSH-tHS-cWW

0.00 -486.91 8 6

Kink-turn from U4

151

Motif group IL_67834.1

Basepair signature:
cWW-R-R-R-R-R-R-tWW-R-R-R-R-R-R-R-R-R-R-R-R-cWW

0.00 -487.29 17 14

152

Motif group IL_34907.1

Basepair signature:
cWW-R-tWH-L-tHS-cWW

0.00 -488.04 9 7

UAA/GAN

153

Motif group IL_13394.1

Basepair signature:
cWW-L-R-R-R-R-tSS-R-R-R-R-R-R-R-R-L-L-L-cWW

0.00 -489.87 15 14

154

Motif group IL_81215.2

Basepair signature:
cWW-cWW-L-R-R-cWW

0.00 -492.18 8 7

155

Motif group IL_90720.1

Basepair signature:
cWW-L-L-tHS-R-cWW

0.00 -495.91 10 7

156

Motif group IL_66745.4

Basepair signature:
cWW-cWW-L-R-cWW-cWW

0.00 -500.43 10 7

157

Motif group IL_98353.1

Basepair signature:
cWW-cWS-L-L-cWW

0.00 -509.06 8 7

158

Motif group IL_51087.2

Basepair signature:
cWW-L-R-R-R-L-cWW

0.00 -509.14 8 7

159

Motif group IL_22863.1

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -509.30 12 11

tSH-tHW-tHH-tHS

160

Motif group IL_58103.4

Basepair signature:
cWW-L-L-cWS-tSW-cWW

0.00 -511.70 10 8

Symmetric double minor groove platform

161

Motif group IL_47154.3

Basepair signature:
cWW-cSW-L-R-cWW

0.00 -517.85 9 7

162

Motif group IL_54670.1

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -519.57 11 8

tSH-tSH-tHH-tHS

163

Motif group IL_93830.2

Basepair signature:
cWW-cWW-bif-R-cSH-tWH-tHS-cWW

0.00 -520.43 10 9

7x7 Sarcin-Ricin with intercalated A; G-bulge

164

Motif group IL_26785.1

Basepair signature:
cWW-cWW-L-R-R-tSH-tHW-cSH-tHH-tHS-cWW

0.00 -522.20 11 10

10x8 Sarcin-Ricin; G-bulge

165

Motif group IL_94431.4

Basepair signature:
cWW-cSH-cWS-cWW

0.00 -525.53 7 5

Minor groove platform

166

Motif group IL_90538.2

Basepair signature:
cWW-tSS-L-tSH-tSS-tHS-L-R-L-cWW

0.00 -531.12 9 6

Kink-turn

167

Motif group IL_07931.4

Basepair signature:
cWW-tSH-cWW-cWW

0.00 -531.56 9 7

168

Motif group IL_08296.2

Basepair signature:
cWW-tSH-R-R-cWW

0.00 -534.79 12 9

UAA/GAN related, with intercalation

169

Motif group IL_53034.1

Basepair signature:
cWW-cWW-cWW

0.00 -539.02 8 7

170

Motif group IL_57188.2

Basepair signature:
cWW-tWW-cSH-L-tWW-cSH-cWW

0.00 -540.04 10 8

Kink-turn related

171

Motif group IL_34470.1

Basepair signature:
cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -543.21 13 11

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

172

Motif group IL_35058.1

Basepair signature:
cWW-tSW-L-cWS-tSW-R-R-cWW

0.00 -545.91 10 9

Symmetric double minor groove platform

173

Motif group IL_91036.1

Basepair signature:
cWW-R-R-cWW

0.00 -547.08 7 6

174

Motif group IL_95485.5

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -552.59 7 6

Major groove platform with extra cWW

175

Motif group IL_77771.1

Basepair signature:
cWW-L-L-cWW

0.00 -553.20 8 6

176

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-cWW-cWW

0.00 -553.32 11 9

177

Motif group IL_65075.1

Basepair signature:
cWW-L-L-cWW

0.00 -562.36 10 6

178

Motif group IL_60676.4

Basepair signature:
cWW-R-cWW

0.00 -569.51 7 6

179

Motif group IL_68506.1

Basepair signature:
cWW-cWW-tSH-R-tHW-tHW-tWH-L-R-cWW-cWW

0.00 -576.18 13 12

180

Motif group IL_34915.2

Basepair signature:
cWW-R-tWH-cSH-cWW

0.00 -580.44 11 9

Receptor of 11-nt loop-receptor motif

181

Motif group IL_59423.1

Basepair signature:
cWW-L-R-R-tHS-cWW

0.00 -580.73 9 7

182

Motif group IL_01312.10

Basepair signature:
cWW-cWW-cWW

0.00 -580.90 7 7

Isolated non-canonical cWW pair

183

Motif group IL_86040.1

Basepair signature:
cWW-L-R-cSW-cSH-cWW

0.00 -581.47 8 7

184

Motif group IL_19557.1

Basepair signature:
cWW-L-cWW

0.00 -586.36 10 7

185

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -593.32 12 9

8x6 Sarcin-Ricin with bulged A; G-bulge

186

Motif group IL_74980.1

Basepair signature:
cWW-L-R-cWW-cWW-cWW

0.00 -597.77 12 10

187

Motif group IL_14148.3

Basepair signature:
cWW-cWW-tSH-cWW

0.00 -601.75 8 7

Minor groove platform with extra cWW

188

Motif group IL_80663.8

Basepair signature:
cWW-tHS-cSH-cWW

0.00 -614.38 7 6

Major groove platform

189

Motif group IL_06437.8

Basepair signature:
cWW-tSH-cWW

0.00 -614.84 7 5

Minor groove platform

190

Motif group IL_49767.3

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -620.86 9 7

UAA/GAN with extra cWW

191

Motif group IL_66414.4

Basepair signature:
cWW-cWW-tSH-tHS-tHS-L-R-cWW

0.00 -621.37 10 9

Triple sheared with non-canonical cWW

192

Motif group IL_22615.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-cSH-R-R-L-tHH-tHS-cWW

0.00 -622.26 21 19

193

Motif group IL_63596.2

Basepair signature:
cWW-tWH-cSH-L-cWS-cWW

0.00 -629.30 7 5

C-loop

194

Motif group IL_98736.1

Basepair signature:
cWW-L-R-cSW-cWW

0.00 -640.06 11 8

Self complementary

195

Motif group IL_45289.1

Basepair signature:
cWW-bif-cSH-cSW-cWW-cWW

0.00 -644.47 8 5

196

Motif group IL_90600.1

Basepair signature:
cWW-R-R-tHS-cWW

0.00 -650.24 8 6

197

Motif group IL_23934.1

Basepair signature:
cWW-R-tWH-tHS-cWW

0.00 -655.43 9 8

tSH-tHW

198

Motif group IL_76308.3

Basepair signature:
cWW-tSH-tWH-tHW-tHS-cWW-cWW

0.00 -661.21 10 9

tSH-tWH-tHS-cWW

199

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-tWH-tWH-tSS-L-L-L-bif-cWW-tSS-cSS-R-R-cWW

0.00 -665.77 17 15

Kink-turn related

200

Motif group IL_28564.1

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -667.49 9 8

201

Motif group IL_48280.1

Basepair signature:
cWW-tSH-R-cWW

0.00 -670.56 8 6

202

Motif group IL_04346.4

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -673.73 10 9

8x7 Sarcin-Ricin; G-bulge

203

Motif group IL_38634.3

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -677.31 9 8

cWH basepair and non-canonical AC

204

Motif group IL_53523.4

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -678.75 9 7

UAA/GAN

205

Motif group IL_99373.2

Basepair signature:
cWW-bif-L-cWW

0.00 -693.66 8 7

206

Motif group IL_55953.2

Basepair signature:
cWW-tSH-R-tHS-L-bif-cWW

0.00 -705.16 10 9

207

Motif group IL_81326.2

Basepair signature:
cWW-L-cWW-cWW

0.00 -730.50 7 6

208

Motif group IL_16109.3

Basepair signature:
cWW-R-cSH-tWH-tHS-cWW

0.00 -757.99 9 8

5x5 Sarcin-Ricin with intercalated A; G-bulge

209

Motif group IL_98882.2

Basepair signature:
cWW-R-cWW

0.00 -764.02 10 7

Decoding loop related

210

Motif group IL_85877.9

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -790.73 8 6

Tandem non-canonical cWW pairs

211

Motif group IL_94181.3

Basepair signature:
cWW-L-cWW

0.00 -798.25 7 6

Intercalated cWS

212

Motif group IL_37181.1

Basepair signature:
cWW-cWW-cWW

0.00 -799.28 8 6

Isolated non-canonical cWW pair

213

Motif group IL_14266.1

Basepair signature:
cWW-R-cWW

0.00 -812.23 8 6

214

Motif group IL_04106.2

Basepair signature:
cWW-cWW-cWW

0.00 -821.36 7 6

Isolated non-canonical cWW pair

215

Motif group IL_03932.2

Basepair signature:
cWW-tHS-cWW

0.00 -825.37 8 6

Major groove platform with intercalation

216

Motif group IL_02060.2

Basepair signature:
cWW-cHH-cWW

0.00 -837.54 8 6

Major groove platform

217

Motif group IL_36143.2

Basepair signature:
cWW-R-cWW

0.00 -855.75 9 7

218

Motif group IL_81328.5

Basepair signature:
cWW-R-cWW

0.00 -860.57 8 7

Major groove intercalation

219

Motif group IL_24905.8

Basepair signature:
cWW-cSW-R-cWW

0.00 -889.25 10 9

220

Motif group IL_18459.1

Basepair signature:
cWW-cWW-R-cWW

0.00 -932.95 8 7

221

Motif group IL_08757.2

Basepair signature:
cWW-tSH-tHW-cWW

0.00 -945.64 8 6

tSH-tHW

222

Motif group IL_87630.3

Basepair signature:
cWW-tSH-cSH-cWW

0.00 -971.50 8 6

Major groove platform with extra pair

223

Motif group IL_81389.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -1163.19 9 9

UAA/GAN related

224

Motif group IL_94501.1

Basepair signature:
cWW-cWW-cWW-tHW-cWH-cSH-cWH-cSH-tHS-cWW

0.00 -3989.59 12 11

225

Motif group IL_61812.1

Basepair signature:
cWW-cWW-tSH-tHW-cSH-tHH-tHS-cWW-cWW

0.00 -4168.29 12 11

9x8 Sarcin-Ricin; G-bulge

226

Motif group IL_22436.1

Basepair signature:
cWW-L-cSS-tWH-tHW-cWW-cWW

0.00 -4208.54 9 8

Kink-turn related

227

Motif group IL_56501.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -4282.19 10 9

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

228

Motif group IL_41593.1

Basepair signature:
cWW-cHW-tHW-tHW-tHW-bif-cWW

0.00 -4316.41 11 9

229

Motif group IL_10517.1

Basepair signature:
cWW-cWW-tSH-tWH-tHW-tHS-cWW-cWW

0.00 -4337.47 12 10

230

Motif group IL_59724.1

Basepair signature:
cWW-bif-tSH-tHW-cSH-tHH-bif-cWW

0.00 -4342.49 12 10

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

231

Motif group IL_19048.1

Basepair signature:
cWW-bif-bif-L-L-cSW-cWW-cSH-R-cWW

0.00 -4374.20 12 11

232

Motif group IL_31504.1

Basepair signature:
cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW

0.00 -4411.46 20 18

233

Motif group IL_16702.1

Basepair signature:
cWW-tSH-tWH-tHW-cWH-tSS-tHW-tHH-cWW

0.00 -4459.44 12 10

234

Motif group IL_45257.1

Basepair signature:
cWW-tSH-cWH-tWH-tSS-tHW-tHH-cWW

0.00 -4524.06 11 10

235

Motif group IL_24106.1

Basepair signature:
cWW-tSH-tWH-tWH-R-R-R-R-R-R-R-cWW

0.00 -4560.73 20 18

236

Motif group IL_84409.1

Basepair signature:
cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW

0.00 -4561.27 19 18

237

Motif group IL_96860.1

Basepair signature:
cWW-cWW-cWH-L-cWW-cWW

0.00 -4619.76 11 7

238

Motif group IL_35110.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -4712.10 9 8

7x6 Sarcin-Ricin; G-bulge

239

Motif group IL_42032.1

Basepair signature:
cWW-tWH-R-R-R-cSH-cWW-cWW

0.00 -4722.16 9 6

240

Motif group IL_17069.2

Basepair signature:
cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW

0.00 -4802.66 11 11

Kink-turn related

241

Motif group IL_56455.2

Basepair signature:
cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW

0.00 -5112.24 13 12

Bacterial 5S Loop E

242

Motif group IL_87677.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5170.00 11 9

tWH-tWH-tHW-tHW

243

Motif group IL_76900.1

Basepair signature:
cWW-tSH-tSH-tHS-tSS-L-R-cWW

0.00 -5235.28 12 10

Kink-turn

244

Motif group IL_92440.4

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5272.13 11 9

tWH-tWH-tHW-tHW

245

Motif group IL_21121.1

Basepair signature:
cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW

0.00 -5300.43 11 10

246

Motif group IL_85931.1

Basepair signature:
cWW-cSW-tSH-tHH-tSS-tSS-R-R-cWW

0.00 -5302.50 9 8

Kink-turn

247

Motif group IL_60992.4

Basepair signature:
cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW

0.00 -5309.48 10 8

248

Motif group IL_17765.1

Basepair signature:
cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW

0.00 -5312.68 9 7

249

Motif group IL_75283.1

Basepair signature:
cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW

0.00 -5448.66 11 10

250

Motif group IL_64879.1

Basepair signature:
cWW-tSH-tSH-tHS-tHS-cWW

0.00 -5449.13 8 7

Triple sheared related

251

Motif group IL_16456.1

Basepair signature:
cWW-tSH-tSH-tHS-tSS-tSS-R-cWW

0.00 -5462.04 9 8

Kink-turn

252

Motif group IL_20549.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -5530.53 11 9

Receptor of 11-nt loop-receptor motif

253

Motif group IL_90922.1

Basepair signature:
cWW-tSH-tWH-tHS-tSS-tSS-R-cWW

0.00 -5561.88 9 8

Kink-turn

254

Motif group IL_72416.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -5695.56 9 9

255

Motif group IL_81522.1

Basepair signature:
cWW-cSH-L-cWS-cWW

0.00 -5864.43 10 8

Major groove minor groove platform with intercalation; mini C-loop

256

Motif group IL_52729.1

Basepair signature:
cWW-cWW-cWW-cWW-cWH-cWW

0.00 -5915.60 11 9

257

Motif group IL_97601.6

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -5928.26 11 9

Receptor of 11-nt loop-receptor motif

258

Motif group IL_75461.2

Basepair signature:
cWW-cSS-L-R-R-cWW

0.00 -6092.33 8 7

180 degree turn

259

Motif group IL_38810.1

Basepair signature:
cWW-L-cWW

0.00 -6158.41 9 8

260

Motif group IL_86428.1

Basepair signature:
cWW-tHW-cWW-L-cSH-R-tHS-cWW-cWW

0.00 -6180.16 9 8

261

Motif group IL_74353.1

Basepair signature:
cWW-tSH-tHS-tHS-cWW-cWW

0.00 -6226.12 10 9

Triple sheared with non-canonical cWW

262

Motif group IL_14397.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -6229.82 11 8

263

Motif group IL_98711.1

Basepair signature:
cWW-tSH-tHW-tWW-cWW

0.00 -6242.33 10 9

tSH-tHW-tWW

264

Motif group IL_94518.4

Basepair signature:
cWW-bif-cWW-cWW-cWW-cWW

0.00 -6418.38 9 8

265

Motif group IL_19954.1

Basepair signature:
cWW-tSH-tSH-tHS-cWW-cWW

0.00 -6420.80 10 8

266

Motif group IL_56105.1

Basepair signature:
cWW-tHS-cSH-tHS-cWW

0.00 -6496.27 10 8

267

Motif group IL_50676.4

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -6526.65 9 7

Tandem non-canonical cWW pairs

268

Motif group IL_18472.1

Basepair signature:
cWW-R-tSW-R-tSW-L-L-cWW

0.00 -6606.85 10 9

269

Motif group IL_51590.1

Basepair signature:
cWW-cSH-tWH-cSH-cWW-cWW

0.00 -6634.41 8 7

C-loop with extra cWW pair

270

Motif group IL_18894.1

Basepair signature:
cWW-tSH-tSH-tHS-tHS-cWW

0.00 -6811.43 10 9

Quadruple sheared

271

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -6942.25 10 9

tSH-tHW-tWH-tHS

272

Motif group IL_53529.1

Basepair signature:
cWW-L-cWH-R-R-cWW

0.00 -6942.50 10 7

273

Motif group IL_35904.1

Basepair signature:
cWW-tSH-tSS-tSS-R-R-R-R-cWW

0.00 -7097.51 7 6

Kink-turn

274

Motif group IL_66584.4

Basepair signature:
cWW-tSH-tSH-tHH-tHS-cWW

0.00 -7178.15 10 8

tSH-tSH-tHH-tHS

275

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -7549.14 11 8

tSH-tHH-tHS

276

Motif group IL_69421.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -7710.64 10 7

277

Motif group IL_78994.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -7920.71 9 8

278

Motif group IL_47743.1

Basepair signature:
cWW-cSW-tWH-cSH-L-cWS-cWW

0.00 -7954.78 9 6

279

Motif group IL_96042.3

Basepair signature:
cWW-cWW-cSH-R-cWW

0.00 -7957.46 9 6

Major groove minor groove platform with extra cWW

280

Motif group IL_84158.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -7976.43 11 8

Tandem non-canonical cWW pairs

281

Motif group IL_74719.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -8386.95 8 7

Double sheared

282

Motif group IL_52451.9

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -8417.72 10 7

283

Motif group IL_93270.1

Basepair signature:
cWW-L-L-cWS-cWW

0.00 -8547.03 8 5

Minor groove platform

284

Motif group IL_08376.2

Basepair signature:
cWW-tWH-tSW-L-cWW

0.00 -8601.90 6 5

C-loop

285

Motif group IL_07342.2

Basepair signature:
cWW-cWW

0.00 -8603.20 8 6

Bulged stacked bases

286

Motif group IL_90991.4

Basepair signature:
cWW-cWW

0.00 -8628.34 7 6

Multiple bulged bases

287

Motif group IL_04038.3

Basepair signature:
cWW-L-cWW

0.00 -8683.57 7 7

Single stack bend

288

Motif group IL_18369.2

Basepair signature:
cWW-cSH-tHS-cWW

0.00 -8685.05 7 6

289

Motif group IL_38958.5

Basepair signature:
cWW-tHS-cWW

0.00 -8687.40 8 6

Isolated tHS basepair with bulges

290

Motif group IL_54997.4

Basepair signature:
cWW-tWW-cWW

0.00 -8712.38 9 7

Isolated tWW turn

291

Motif group IL_67621.4

Basepair signature:
cWW-cWS-cWW

0.00 -8713.61 8 7

Isolated cWS basepair

292

Motif group IL_10543.1

Basepair signature:
cWW-L-R-cWW

0.00 -8742.54 9 8

Isolated non-canonical cWW contact

293

Motif group IL_16160.1

Basepair signature:
cWW-L-R-cWW

0.00 -8745.08 10 8

Isolated non-canonical cWW pair

294

Motif group IL_80617.1

Basepair signature:
cWW-L-R-cWW

0.00 -8763.13 10 8

Isolated non-canonical cWW contact

295

Motif group IL_51971.1

Basepair signature:
cWW-L-R-cWW

0.00 -8763.13 10 8

Isolated non-canonical cWW contact

296

Motif group IL_77341.1

Basepair signature:
cWW-L-R-cWW

0.00 -8764.79 10 8

297

Motif group IL_09705.6

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -8803.77 8 7

Double sheared

298

Motif group IL_15795.1

Basepair signature:
cWW-cSH-R-cWW

0.00 -8846.54 10 8

Minor groove platform

299

Motif group IL_72938.1

Basepair signature:
cWW-cWW-cSH-cSH-tHS-cWW

0.00 -9075.62 9 7

8-nt loop receptor

300

Motif group IL_55896.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -9341.69 11 9

Triple sheared

301

Motif group IL_99645.1

Basepair signature:
cWW-cWW

0.00 -9999.00 9 7

Single bulged G

302

Motif group IL_96600.1

Basepair signature:
cWW-cWW

0.00 -9999.00 10 7

Single bulged U

303

Motif group IL_94592.1

Basepair signature:
cWW-cWW

0.00 -9999.00 10 7

Single bulged U

304

Motif group IL_90106.3

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -9999.00 9 8

305

Motif group IL_85053.1

Basepair signature:
cWW-cWW

0.00 -9999.00 10 7

Single bulged G

306

Motif group IL_83121.6

Basepair signature:
cWW-cSS-R-cWW

0.00 -9999.00 8 6

307

Motif group IL_83039.9

Basepair signature:
cWW-cWW

0.00 -9999.00 7 7

Single bulged U

308

Motif group IL_80007.14

Basepair signature:
cWW-cWW

0.00 -9999.00 7 7

Single bulged A

309

Motif group IL_75560.1

Basepair signature:
cWW-cWW

0.00 -9999.00 9 7

Single bulged A

310

Motif group IL_70995.5

Basepair signature:
cWW-tSH-L-cWW

0.00 -9999.00 7 6

Major groove platform; stack outside cWW

311

Motif group IL_61258.7

Basepair signature:
cWW-cWW

0.00 -9999.00 7 7

Single bulged C

312

Motif group IL_59521.1

Basepair signature:
cWW-cWW

0.00 -9999.00 9 6

313

Motif group IL_59137.8

Basepair signature:
cWW-cWW

0.00 -9999.00 7 7

Single bulged G

314

Motif group IL_56467.5

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -9999.00 8 8

Triple sheared

315

Motif group IL_54678.2

Basepair signature:
cWW-cWW

0.00 -9999.00 9 7

316

Motif group IL_42589.5

Basepair signature:
cWW-cHW-cWW

0.00 -9999.00 8 7

Isolated cWH basepair

317

Motif group IL_40508.3

Basepair signature:
cWW-cWW

0.00 -9999.00 9 7

Major groove intercalation

318

Motif group IL_39521.4

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -9999.00 8 8

tSH-tWH-tHS

319

Motif group IL_28060.3

Basepair signature:
cWW-tHH-L-cWS-R-cWW

0.00 -9999.00 9 6

Major groove minor groove platform with tHH

320

Motif group IL_24590.1

Basepair signature:
cWW-tHH-cWW

0.00 -9999.00 10 8

321

Motif group IL_23663.4

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -9999.00 10 7

322

Motif group IL_14526.1

Basepair signature:
cWW-cWW-tWW-cWW

0.00 -9999.00 9 7

tWW and non-canonical cWW

Coloring options: