RNA 3D Hub

JAR3D Query RF03064-3.48 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 3 Internal loop

Column numbers: 57-64, 121-127 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    AAAGU-AG*C-AAAAU  182

    
    UGAGU-AG*C-AAAAG  132

    
    UGAGU-AG*C-CAAAG   92

    
    AGAGU-AG*C-AAAAU   83

    
    GUAGU-AG*C-AAGGC   47

    
    CGAGU-AG*C-AAAAG   44

    
    GUAGU-AG*C-GAGGC   44

    
    UGAGU-AG*C-GAAAG   36

    
    UGAGU-AG*U-GAAAG   36

    
    AAAGU-AG*C-GAAAU   31

    
    UGAGU-AG*C-AAAAA   31

    
    CAAGU-AG*C-AAAAG   29

    
    UGAGU-AG*U-GAAAA   29

    
    AUAGU-AG*U-GAGGU   25

    
    GAAGU-AG*C-AAAAC   25

    
    GUAGU-AG*C-GAGAC   24

    
    GGAGU-AG*C-AAAAC   23

    
    AGAGU-AG*C-GAAAU   20

    
    AAAGU-AG*C-CAAAU   15

    
    AGAGU-AG*C-CAAAU   15

    
    AGAGU-AG*U-GAAAU   15

    
    UUAGU-AG*C-GAGAA   15

    
    AAAGU-AG*U-AAAAU   14

    
    AAAGU-AG*U-GAAAU   14

    
    UUAGU-AG*C-GAGGA   12

    
    AUAGU-AG*C-GAGGU   11

    
    CUAGU-AG*C-GAGAG   11

    
    UGAGU-AG*C-GAAAA   11

    
    UAAGU-AG*C-GAAAG    9

    
    CAAGU-AG*C-GAAAG    8

    
    GGAGU-AG*C-GAAAC    8

    
    UAAGU-AG*C-AAAAG    8

    
    UUAGU-AG*C-AAAAG    8

    
    AAAGU-AA*U-GAAAU    7

    
    CGAGU-AG*C-CAAAG    7

    
    GGAGU-AG*C-CAAAC    7

    
    UGAUU-AG*C-GAAAG    7

    
    CAAGU-AG*U-GAAAG    6

    
    GUAUU-AG*C-GAGGC    6

    
    UGAGU-AG*U-CAAAA    6

    
    AAAGU-AG*CAAAAAU    5

    
    AGAGU-AA*U-GAAAU    5

    
    AGAUU-AG*U-GAAAU    5

    
    AGAGU-AG*U-AAAAU    4

    
    AUAGU-AG*C-AAGGU    4

    
    AUAGU-AG*C-GAGAU    4

    
    CAAGU-AG*C-GAACG    4

    
    CGAGU-AG*C-GAAAG    4

    
    CUAGU-AG*C-GAAAG    4

    
    GCGGU-AG*C-GAAAC    4

    
    GUAGU-AG*C-AAAAC    4

    
    GUAGU-AG*C-AAACC    4

    
    UGAGU-AG*C-CAAAA    4

    
    CAAGU-AG*C-AAAAA    3

    
    CAAGU-AG*C-CAAAG    3

    
    CCAGU-AG*C-CAAAA    3

    
    GAAGU-AG*C-CAAAC    3

    
    GAAGU-AG*C-GAAAC    3

    
    GUAGU-AG*C-AAGAC    3

    
    UAAGU-AG*C-AAAAA    3

    
    UAAGU-AG*C-GAAAA    3

    
    UAAGU-AG*U-GAAAG    3

    
    UCGGU-AG*C-AAAGA    3

    
    UGAGU-AC*U-GAAAG    3

    
    UGAGU-AG*U-AAAAG    3

    
    UGAGU-AG*U-CAAAG    3

    
    UUAGU-AG*C-AAAAA    3

    
    UUAGU-AG*C-AAGAA    3

    
    CGAGU-AG*CAAAAAG    2

    
    AAAGU-AG*C-UAAAU    2

    
    AAAUU-AG*C-AAAAU    2

    
    AGAAU-AG*C-AAAAU    2

    
    CCAGU-AG*C-GAGAG    2

    
    CGAGU-AG*U-CAAAG    2

    
    CUAGU-AG*U-CAAAG    2

    
    GAAGU-AG*C-GAAAA    2

    
    GCGGU-AG*C-AAAAC    2

    
    GUAGU-AG*C-AAAGC    2

    
    GUAGU-AG*C-GAAAC    2

    
    GUAGU-AG*U-GAGAC    2

    
    GUUGU-AG*C-GAAGC    2

    
    UAAGU-AG*C-CAAAA    2

    
    UAAUU-AG*C-GAAAG    2

    
    UAAUU-AG*U-GAAAG    2

    
    UCAGU-AG*C-GAGGA    2

    
    UGAAU-AG*U-GAAAG    2

    
    UGAGU-AA*U-GAAAA    2

    
    UGAGU-AA*U-GAAAG    2

    
    UGUGU-AG*C-CAAAG    2

    
    UUACU-AG*C-GAGGA    2

    
    UUAGU-AG*C-AAGGA    2

    
    UUAGU-AG*C-CAAAG    2

    
    UUAGU-AG*C-GAAAG    2

    
    UUAGU-AG*U-GAGAA    2

    
    UUAUU-AG*C-GAGGA    2

    
    AAAGU-AG*CAAAAUA    1

    
    AAAGU-AG*UGAAAAU    1

    
    AAAGUUAG*C-AAAAU    1

    
    CAAGU-AG*CAAAAAG    1

    
    CAAGU-AG*UAGAACG    1

    
    CGAGU-AG*CAAAAGG    1

    
    CUAGUUAG*C-GAAAG    1

    
    UAAGU-AG*CGAAAAA    1

    
    UGAGU-AG*CAAAAAA    1

    
    UGAGU-AG*UGAAAAA    1

    
    UGAGU-AG*UUGAAAA    1

    
    UGAGUUAG*C-AAAAG    1

    
    AAAAU-AG*C-GAAAU    1

    
    AAAAU-AG*U-AAAAU    1

    
    AAAAU-AG*U-GAAAU    1

    
    AAAGU-AA*U-AAAAU    1

    
    AAAGU-AG*C-AAAAC    1

    
    AAAGU-AG*C-AAACU    1

    
    AAAGU-AG*C-AAGAU    1

    
    AAAGU-AG*U-CAAAU    1

    
    AAAGU-AG*U-GAACU    1

    
    AAAUU-AG*U-GAAAU    1

    
    AGAAU-AG*C-CAAAU    1

    
    AGAAU-AG*U-GAAAU    1

    
    AGAGC-AG*U-GAAAU    1

    
    AGAGU-AA*C-AAAAU    1

    
    AGAGU-AC*G-GAAAU    1

    
    AGAGU-AG*C-AAAAC    1

    
    AGAGU-AG*C-CGAAU    1

    
    AGAUU-AG*C-GAAAU    1

    
    AUAGU-AA*U-GAACU    1

    
    AUAGU-AG*C-AAAGC    1

    
    AUAGU-AG*C-GAGAG    1

    
    AUAGU-AG*C-UAGAU    1

    
    AUAGU-AG*U-AAGGU    1

    
    AUAGU-AG*U-GAAAU    1

    
    AUAGU-AG*U-GAAGU    1

    
    AUAUU-AG*C-GAGGU    1

    
    AUGGU-AG*C-AAAAU    1

    
    AUGGU-AG*C-GAAGU    1

    
    CAAGU-AC*G-GAAAA    1

    
    CAAGU-AC*G-GAAAG    1

    
    CAAGU-AG*A-AAAGU    1

    
    CAAGU-AG*C-AAACG    1

    
    CAAGU-AG*U-AAAAG    1

    
    CAAGU-AG*U-CAAAG    1

    
    CAAUU-AG*C-GAAAG    1

    
    CCAGU-AG*U-GAGAG    1

    
    CCGGU-AC*G-GAAAG    1

    
    CCGGU-AG*C-GAAAG    1

    
    CGAGU-AG*C-AAAAA    1

    
    CGAGU-AG*C-GAAAA    1

    
    CGAGU-AG*U-GAAAG    1

    
    CUAGU-AG*C-AAACG    1

    
    CUAGU-AG*C-CAACG    1

    
    CUAGU-AG*C-GAACG    1

    
    CUAGU-AG*U-GAGAG    1

    
    CUAGU-AG*U-GAGGG    1

    
    CUAUU-AG*C-GAGAG    1

    
    GAAGU-AG*C-GAGAC    1

    
    GAAGU-AG*U-AAAAC    1

    
    GGAAU-AG*C-AAAAC    1

    
    GGAGU-AA*U-AAAAC    1

    
    GGAGU-AG*C-AAAAU    1

    
    GGAGU-AG*C-UAAAC    1

    
    GGAGU-AG*U-AAAAC    1

    
    GGAGU-AG*U-AAAAU    1

    
    GGAGU-AG*U-GAAAC    1

    
    GUAAU-AG*U-GAAAC    1

    
    GUAGU-AG*C-AAAGU    1

    
    GUAGU-AG*C-AAGGA    1

    
    GUAGU-AG*C-GAAAA    1

    
    GUAGU-AG*C-GAGGG    1

    
    GUAGU-GG*C-GAGGC    1

    
    GUGGU-AG*C-AAAAC    1

    
    GUGGU-AG*C-GAAAC    1

    
    GUGGU-AG*C-GAAGC    1

    
    UAAGU-AC*G-GAAAG    1

    
    UAAGU-AG*C-AAACA    1

    
    UAAGU-AG*C-CAAAG    1

    
    UAAGU-AG*U-GAACA    1

    
    UCAGU-AG*C-GAGAA    1

    
    UCGGU-AG*C-GAAGA    1

    
    UGAAU-AG*C-GAAAG    1

    
    UGAAU-AG*C-GGAAG    1

    
    UGAGG-AG*C-CAAAG    1

    
    UGAGU-AA*C-GAAAG    1

    
    UGAGU-AA*C-GAAAU    1

    
    UGAGU-AA*U-GAAAU    1

    
    UGAGU-AG*C-GGAAG    1

    
    UGAGU-CG*U-CAAAA    1

    
    UGAUC-AG*U-GAAAG    1

    
    UGAUU-AG*C-GAAAA    1

    
    UGAUU-AG*U-GAAAG    1

    
    UGGGU-AG*C-AAAAA    1

    
    UUAGU-AC*G-GAAAA    1

    
    UUAGU-AG*C-AAACG    1

    
    UUAGU-AG*C-CAACA    1

    
    UUAGU-AG*C-CAACG    1

    
    UUAGU-AG*C-GAAAA    1

    
    UUAGU-AG*C-GGGGA    1

    
    UUAGU-AG*U-GAAAG    1

    
    UUAGU-AG*U-GAGGA    1

    
    UUAUU-AG*C-GAGGG    1

    
    UUAUU-AG*U-GAGGG    1

    
    UUGGU-AG*C-AAAGA    1

    
    UUGGU-AG*U-GAAGA    1

    
    AAA-U-AG*C-AAAAU    1

    
    AAAGU-AG*C--AAAU    1

    
    UGAGU-AG*C-A-AAG    1

    
    ---GU-AG*C-AAAGA    1

    
    Omitted sequenced and counts

    
    UGAGU-AG*C-MAAAG    1

    
    UGAGU-AG*U-ANAAG    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_56501.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

95.63 18.35 6 3

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

2

Motif group IL_35110.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

94.29 64.50 2 1

7x6 Sarcin-Ricin; G-bulge

3

Motif group IL_24606.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-L-cWW

80.39 16.14 5 2

8x6 Sarcin-Ricin with inserted Y; G-bulge

4

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

73.41 10.57 5 3

8x6 Sarcin-Ricin with bulged A; G-bulge

5

Motif group IL_93830.2

Basepair signature:
cWW-cWW-bif-R-cSH-tWH-tHS-cWW

68.55 5.81 5 3

7x7 Sarcin-Ricin with intercalated A; G-bulge

6

Motif group IL_36582.1

Basepair signature:
cWW-L-R-L-tHH-L-tWH-tHS-cWW

57.05 2.91 7 3

8x6 Sarcin-Ricin with inserted A; G-bulge

7

Motif group IL_54670.1

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

53.95 -4.99 5 3

tSH-tSH-tHH-tHS

8

Motif group IL_89193.1

Basepair signature:
cWW-L-R-R-cSH-tWH-tHS-cWW

25.74 -13.61 5 4

5x5 Sarcin-Ricin with intercalated A; G-bulge

9

Motif group IL_04346.4

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

20.31 -12.55 4 3

8x7 Sarcin-Ricin; G-bulge

10

Motif group IL_66584.4

Basepair signature:
cWW-tSH-tSH-tHH-tHS-cWW

17.14 -30.38 5 3

tSH-tSH-tHH-tHS

11

Motif group IL_36973.4

Basepair signature:
cWW-tSH-L-R-R-R-L-L-cWW-cWW

5.78 -34.32 6 5

12

Motif group IL_96596.1

Basepair signature:
cWW-tSH-tHW-L-R-cWW-cWW

3.10 -40.36 8 5

13

Motif group IL_88269.2

Basepair signature:
cWW-tSH-tHW-L-cSH-R-cWW

1.97 -38.83 5 4

6x5 Sarcin-Ricin; G-bulge

14

Motif group IL_29509.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

1.34 -36.13 7 5

8x7 Sarcin-Ricin; G-bulge

15

Motif group IL_16456.1

Basepair signature:
cWW-tSH-tSH-tHS-tSS-tSS-R-cWW

1.20 -55.05 7 5

Kink-turn

16

Motif group IL_74353.1

Basepair signature:
cWW-tSH-tHS-tHS-cWW-cWW

0.78 -54.37 6 4

Triple sheared with non-canonical cWW

17

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.71 -47.06 5 3

tSH-tHW-tWH-tHS

18

Motif group IL_09129.1

Basepair signature:
cWW-tWH-tWH-L-R-L-tWW-cWW

0.42 -75.71 6 5

19

Motif group IL_04736.1

Basepair signature:
cWW-tSW-L-R-R-L-tWS-cWW

0.35 -37.16 7 5

20

Motif group IL_76900.1

Basepair signature:
cWW-tSH-tSH-tHS-tSS-L-R-cWW

0.28 -51.61 7 5

Kink-turn

21

Motif group IL_57188.2

Basepair signature:
cWW-tWW-cSH-L-tWW-cSH-cWW

0.21 -40.87 5 5

Kink-turn related

22

Motif group IL_49767.3

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.21 -72.89 5 4

UAA/GAN with extra cWW

23

Motif group IL_17971.1

Basepair signature:
cWW-tWW-L-tWW-L-cWW

0.14 -42.09 8 6

24

Motif group IL_11882.1

Basepair signature:
cWW-L-R-R-tHW-tHW-L-R-cWW

0.14 -55.04 8 5

25

Motif group IL_95688.1

Basepair signature:
cWW-L-cSS-cSS-L-R-cWW

0.14 -66.81 7 5

26

Motif group IL_17470.4

Basepair signature:
cWW-R-tHW-tHW-tWW-cWW

0.07 -43.26 5 3

tHW-tHW cross-strand stack

27

Motif group IL_94518.4

Basepair signature:
cWW-bif-cWW-cWW-cWW-cWW

0.07 -49.45 7 4

28

Motif group IL_96878.1

Basepair signature:
cWW-tSH-L-R-R-L-L-L-cWW

0.07 -60.61 6 5

29

Motif group IL_89587.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.07 -61.68 8 5

30

Motif group IL_89197.1

Basepair signature:
cWW-tSH-R-tHH-tHS-cWW

0.07 -62.04 8 4

31

Motif group IL_18894.1

Basepair signature:
cWW-tSH-tSH-tHS-tHS-cWW

0.07 -69.12 7 4

Quadruple sheared

32

Motif group IL_29821.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.07 -93.90 8 4

UAA/GAN with extra stack

33

Motif group IL_68633.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-L-cWW-cWW

0.00 -46.75 6 4

9x7 Sarcin-Ricin with inserted C; G-bulge

34

Motif group IL_01502.1

Basepair signature:
cWW-L-R-R-L-L-L-L-cWW-cWW

0.00 -48.62 9 6

35

Motif group IL_70801.1

Basepair signature:
cWW-L-R-R-tWW-cWW-cWW-cWW

0.00 -53.14 9 5

36

Motif group IL_69979.1

Basepair signature:
cWW-L-R-R-R-R-L-L-L-cWW

0.00 -56.29 8 6

37

Motif group IL_22436.1

Basepair signature:
cWW-L-cSS-tWH-tHW-cWW-cWW

0.00 -58.99 8 6

Kink-turn related

38

Motif group IL_76308.3

Basepair signature:
cWW-tSH-tWH-tHW-tHS-cWW-cWW

0.00 -59.22 8 5

tSH-tWH-tHS-cWW

39

Motif group IL_05523.1

Basepair signature:
cWW-L-R-cWW-cSW-cSH-cWW

0.00 -60.36 8 6

40

Motif group IL_66497.1

Basepair signature:
cWW-tWH-L-R-tHS-bif-cWW

0.00 -61.42 7 6

41

Motif group IL_17069.2

Basepair signature:
cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW

0.00 -62.54 7 4

Kink-turn related

42

Motif group IL_87677.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -62.81 9 6

tWH-tWH-tHW-tHW

43

Motif group IL_92440.4

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -67.98 8 5

tWH-tWH-tHW-tHW

44

Motif group IL_39443.1

Basepair signature:
cWW-L-L-tWH-L-R-R-L-cWW

0.00 -68.57 6 5

45

Motif group IL_59724.1

Basepair signature:
cWW-bif-tSH-tHW-cSH-tHH-bif-cWW

0.00 -72.42 7 6

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

46

Motif group IL_96942.1

Basepair signature:
cWW-L-R-R-R-tHW-tHW-bif-cWW

0.00 -72.71 8 6

47

Motif group IL_60695.5

Basepair signature:
cWW-L-R-R-R-R-cWW

0.00 -74.51 7 4

48

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -77.05 6 4

tSH-tHH-tHS

49

Motif group IL_98876.1

Basepair signature:
cWW-cWW-L-R-R-tHW-bif-cWW

0.00 -79.13 9 7

50

Motif group IL_75461.2

Basepair signature:
cWW-cSS-L-R-R-cWW

0.00 -79.70 6 5

180 degree turn

51

Motif group IL_29549.7

Basepair signature:
cWW-tSH-tSH-tHS-tSS-R-cWW

0.00 -80.52 6 4

Kink-turn

52

Motif group IL_34470.1

Basepair signature:
cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -81.28 6 5

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

53

Motif group IL_65876.1

Basepair signature:
cWW-tSH-L-R-R-R-cWW

0.00 -82.59 9 6

Kink-turn

54

Motif group IL_33557.1

Basepair signature:
cWW-cWW-tHH-L-R-R-R-L-L-L-cWW

0.00 -83.79 8 7

Kink-turn related

55

Motif group IL_98711.1

Basepair signature:
cWW-tSH-tHW-tWW-cWW

0.00 -84.00 8 5

tSH-tHW-tWW

56

Motif group IL_58346.1

Basepair signature:
cWW-cSH-R-R-R-L-cWW-cWW

0.00 -85.75 8 6

57

Motif group IL_95993.1

Basepair signature:
cWW-R-tSS-tWW-tWW-cWW

0.00 -86.40 8 7

Kink-turn related

58

Motif group IL_70627.1

Basepair signature:
cWW-R-R-tWH-L-R-cWW

0.00 -88.93 7 4

UAA/GAN related

59

Motif group IL_52729.1

Basepair signature:
cWW-cWW-cWW-cWW-cWH-cWW

0.00 -88.97 7 5

60

Motif group IL_74736.1

Basepair signature:
cWW-tSH-L-R-R-L-cWW

0.00 -89.39 9 6

61

Motif group IL_65320.1

Basepair signature:
cWW-L-R-R-R-L-tHW-L-R-R-L-cWW

0.00 -90.04 11 7

62

Motif group IL_47002.1

Basepair signature:
cWW-tSH-L-L-tHH-cWW

0.00 -91.05 7 5

63

Motif group IL_68780.2

Basepair signature:
cWW-tSH-tSH-tHS-tSS-R-cWW

0.00 -92.57 8 5

Kink-turn

64

Motif group IL_86428.1

Basepair signature:
cWW-tHW-cWW-L-cSH-R-tHS-cWW-cWW

0.00 -93.40 8 5

65

Motif group IL_61812.1

Basepair signature:
cWW-cWW-tSH-tHW-cSH-tHH-tHS-cWW-cWW

0.00 -94.82 9 6

9x8 Sarcin-Ricin; G-bulge

66

Motif group IL_68057.1

Basepair signature:
cWW-tSS-L-tSH-tHS-cWW-cWW

0.00 -96.05 8 7

Kink-turn

67

Motif group IL_79393.7

Basepair signature:
cWW-L-R-R-L-L-L-L-cWW

0.00 -96.60 8 6

68

Motif group IL_66414.4

Basepair signature:
cWW-cWW-tSH-tHS-tHS-L-R-cWW

0.00 -96.76 7 6

Triple sheared with non-canonical cWW

69

Motif group IL_03420.1

Basepair signature:
cWW-R-cSH-tWH-tSH-tHS-cWW

0.00 -97.80 7 5

tSH-tHS-tHW

70

Motif group IL_85630.1

Basepair signature:
cWW-cWW-L-R-R-R-R-R-L-tHS-cWW

0.00 -99.68 10 8

71

Motif group IL_53318.1

Basepair signature:
cWW-cWW-tWH-tSH-tHS-cWW

0.00 -102.02 7 4

72

Motif group IL_19954.1

Basepair signature:
cWW-tSH-tSH-tHS-cWW-cWW

0.00 -102.04 8 6

73

Motif group IL_55953.2

Basepair signature:
cWW-tSH-R-tHS-L-bif-cWW

0.00 -102.89 8 5

74

Motif group IL_83162.2

Basepair signature:
cWW-tSH-L-R-L-tHH-cWW

0.00 -103.12 6 4

tHS double platform

75

Motif group IL_61275.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -104.16 8 6

76

Motif group IL_94351.1

Basepair signature:
cWW-tSH-L-R-L-tHS-cWW

0.00 -105.32 8 6

77

Motif group IL_32181.1

Basepair signature:
cWW-cWW-cWW-L-cSW-L-R-R-R-cWW

0.00 -105.40 11 9

78

Motif group IL_56867.1

Basepair signature:
cWW-L-R-R-L-L-cSS-L-cWW-cWW

0.00 -105.89 9 8

79

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-L-tSH-tHS-tHS-cWW

0.00 -106.12 9 6

Kink-turn

80

Motif group IL_80412.1

Basepair signature:
cWW-R-R-R-R-R-tWS-cWW

0.00 -107.17 10 7

81

Motif group IL_22863.1

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -107.69 8 7

tSH-tHW-tHH-tHS

82

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-L-L-L-bif-cWW

0.00 -107.87 10 7

Reverse turn

83

Motif group IL_73399.1

Basepair signature:
cWW-L-R-R-R-cWW

0.00 -108.83 7 4

84

Motif group IL_37722.1

Basepair signature:
cWW-cWW-tSH-tWH-tHS-tSS-R-cWW

0.00 -109.02 8 5

85

Motif group IL_16702.1

Basepair signature:
cWW-tSH-tWH-tHW-cWH-tSS-tHW-tHH-cWW

0.00 -109.38 6 4

86

Motif group IL_47108.1

Basepair signature:
cWW-tHH-L-R-R-R-cWW

0.00 -111.61 7 4

87

Motif group IL_14397.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -112.65 8 5

88

Motif group IL_72416.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -112.96 7 5

89

Motif group IL_45257.1

Basepair signature:
cWW-tSH-cWH-tWH-tSS-tHW-tHH-cWW

0.00 -114.43 7 4

90

Motif group IL_18472.1

Basepair signature:
cWW-R-tSW-R-tSW-L-L-cWW

0.00 -114.89 8 5

91

Motif group IL_34590.1

Basepair signature:
cWW-L-R-R-R-R-L-L-tHH-cSH-tWH-tHS-cWW

0.00 -115.22 9 6

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

92

Motif group IL_64879.1

Basepair signature:
cWW-tSH-tSH-tHS-tHS-cWW

0.00 -116.27 7 5

Triple sheared related

93

Motif group IL_90922.1

Basepair signature:
cWW-tSH-tWH-tHS-tSS-tSS-R-cWW

0.00 -118.54 8 6

Kink-turn

94

Motif group IL_12750.1

Basepair signature:
cWW-L-R-cWW-L-R-R-R-R-L-L-cWW

0.00 -120.65 10 9

95

Motif group IL_15978.1

Basepair signature:
cWW-R-cSW-R-R-tHS-cWW

0.00 -122.47 7 5

96

Motif group IL_77870.1

Basepair signature:
cWW-bif-L-L-L-tHS-cWW-cWW

0.00 -124.59 10 7

97

Motif group IL_42032.1

Basepair signature:
cWW-tWH-R-R-R-cSH-cWW-cWW

0.00 -125.05 8 7

98

Motif group IL_41593.1

Basepair signature:
cWW-cHW-tHW-tHW-tHW-bif-cWW

0.00 -126.08 10 6

99

Motif group IL_19048.1

Basepair signature:
cWW-bif-bif-L-L-cSW-cWW-cSH-R-cWW

0.00 -126.76 9 6

100

Motif group IL_92343.1

Basepair signature:
cWW-L-R-R-R-L-L-cWW

0.00 -127.65 7 6

101

Motif group IL_66745.4

Basepair signature:
cWW-cWW-L-R-cWW-cWW

0.00 -128.22 6 5

102

Motif group IL_90157.1

Basepair signature:
cWW-L-L-L-L-tHH-cWS-cWW

0.00 -130.77 9 8

103

Motif group IL_58390.1

Basepair signature:
cWW-bif-tSW-L-L-L-cWW-cSW-R-cWW

0.00 -131.68 10 6

Minor groove platform related

104

Motif group IL_21121.1

Basepair signature:
cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW

0.00 -132.40 7 6

105

Motif group IL_96860.1

Basepair signature:
cWW-cWW-cWH-L-cWW-cWW

0.00 -137.47 7 6

106

Motif group IL_90538.2

Basepair signature:
cWW-tSS-L-tSH-tSS-tHS-L-R-L-cWW

0.00 -138.14 7 6

Kink-turn

107

Motif group IL_70480.1

Basepair signature:
cWW-L-R-L-tHW-L-L-cWW

0.00 -138.32 11 7

108

Motif group IL_69091.1

Basepair signature:
cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW

0.00 -139.02 12 9

109

Motif group IL_58819.1

Basepair signature:
cWW-L-R-R-tWH-L-tSS-tHW-R-tHH-cWW-cWW

0.00 -139.21 9 6

110

Motif group IL_97253.1

Basepair signature:
cWW-L-R-R-R-R-R-R-R-L-L-cWW

0.00 -141.42 12 9

111

Motif group IL_26785.1

Basepair signature:
cWW-cWW-L-R-R-tSH-tHW-cSH-tHH-tHS-cWW

0.00 -142.49 9 7

10x8 Sarcin-Ricin; G-bulge

112

Motif group IL_10517.1

Basepair signature:
cWW-cWW-tSH-tWH-tHW-tHS-cWW-cWW

0.00 -143.06 10 6

113

Motif group IL_89055.1

Basepair signature:
cWW-cWW-L-R-R-L-L-L-L-L-cWW-cWW

0.00 -143.14 10 9

114

Motif group IL_59423.1

Basepair signature:
cWW-L-R-R-tHS-cWW

0.00 -145.70 7 4

115

Motif group IL_82988.1

Basepair signature:
cWW-cWW-L-L-tHS-cWW

0.00 -146.58 7 5

116

Motif group IL_94501.1

Basepair signature:
cWW-cWW-cWW-tHW-cWH-cSH-cWH-cSH-tHS-cWW

0.00 -146.60 10 8

117

Motif group IL_61084.1

Basepair signature:
cWW-L-R-R-L-L-L-cWW

0.00 -146.68 8 6

118

Motif group IL_98353.1

Basepair signature:
cWW-cWS-L-L-cWW

0.00 -149.39 9 8

119

Motif group IL_93094.1

Basepair signature:
cWW-tSH-tHH-R-R-R-cWW

0.00 -150.34 10 6

Reverse kink-turn

120

Motif group IL_69573.1

Basepair signature:
cWW-L-R-tWH-L-R-R-R-R-L-L-tWW-cWW

0.00 -150.80 11 9

121

Motif group IL_46401.1

Basepair signature:
cWW-L-L-L-L-tHH-cWW

0.00 -152.33 9 7

122

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-cWW-cWW

0.00 -153.04 8 7

123

Motif group IL_04667.1

Basepair signature:
cWW-tWH-cSW-L-R-R-L-tHS-cWW

0.00 -153.53 10 9

Kink-turn related

124

Motif group IL_16109.3

Basepair signature:
cWW-R-cSH-tWH-tHS-cWW

0.00 -154.14 4 3

5x5 Sarcin-Ricin with intercalated A; G-bulge

125

Motif group IL_56455.2

Basepair signature:
cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW

0.00 -156.39 8 6

Bacterial 5S Loop E

126

Motif group IL_74051.1

Basepair signature:
cWW-tSS-L-tSH-tHS-L-cWW

0.00 -157.26 7 6

Kink-turn

127

Motif group IL_34907.1

Basepair signature:
cWW-R-tWH-L-tHS-cWW

0.00 -158.67 6 4

UAA/GAN

128

Motif group IL_20463.1

Basepair signature:
cWW-L-R-R-R-cWH-R-tHH-cSH-tWH-tHS-cWW

0.00 -160.22 10 8

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

129

Motif group IL_22821.1

Basepair signature:
cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW

0.00 -160.40 12 9

Pseudoknot

130

Motif group IL_51265.1

Basepair signature:
cWW-tSS-L-tSH-tHS-cWW

0.00 -161.61 6 5

Kink-turn from U4

131

Motif group IL_01963.1

Basepair signature:
cWW-L-R-R-R-cSH-cWW

0.00 -163.92 8 7

132

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -165.46 9 8

Kink-turn related

133

Motif group IL_35058.1

Basepair signature:
cWW-tSW-L-cWS-tSW-R-R-cWW

0.00 -166.56 9 7

Symmetric double minor groove platform

134

Motif group IL_08296.2

Basepair signature:
cWW-tSH-R-R-cWW

0.00 -166.84 7 5

UAA/GAN related, with intercalation

135

Motif group IL_69457.1

Basepair signature:
cWW-L-L-L-L-L-tHH-tHS-cWW

0.00 -168.55 8 7

136

Motif group IL_39287.1

Basepair signature:
cWW-tSH-tHS-tSS-L-R-R-R-R-R-cWW

0.00 -172.49 11 8

Kink-turn related

137

Motif group IL_85931.1

Basepair signature:
cWW-cSW-tSH-tHH-tSS-tSS-R-R-cWW

0.00 -174.23 9 6

Kink-turn

138

Motif group IL_95811.1

Basepair signature:
cWW-L-L-L-cWW-L-bif-cWW

0.00 -175.32 10 7

Vitamin B12 Aptamer

139

Motif group IL_62827.1

Basepair signature:
cWW-R-cWH-R-R-R-cWW

0.00 -175.93 9 8

cWH basepair with bulged bases

140

Motif group IL_20549.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -177.74 6 5

Receptor of 11-nt loop-receptor motif

141

Motif group IL_63750.1

Basepair signature:
cWW-tSS-cSS-tWW-L-tSH-R-R-cWW

0.00 -177.83 11 8

142

Motif group IL_51590.1

Basepair signature:
cWW-cSH-tWH-cSH-cWW-cWW

0.00 -181.67 9 6

C-loop with extra cWW pair

143

Motif group IL_80884.1

Basepair signature:
cWW-cWW-R-R-R-R-cWW

0.00 -182.72 10 8

144

Motif group IL_53523.4

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -186.55 5 4

UAA/GAN

145

Motif group IL_47743.1

Basepair signature:
cWW-cSW-tWH-cSH-L-cWS-cWW

0.00 -187.04 8 5

146

Motif group IL_34780.1

Basepair signature:
cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW

0.00 -187.84 10 9

Kink-turn

147

Motif group IL_64842.1

Basepair signature:
cWW-L-L-L-tWH-cSH-cWW

0.00 -188.06 10 7

148

Motif group IL_74980.1

Basepair signature:
cWW-L-R-cWW-cWW-cWW

0.00 -188.52 9 8

149

Motif group IL_39507.1

Basepair signature:
cWW-L-R-L-L-L-cWW

0.00 -193.39 10 7.5

150

Motif group IL_74184.1

Basepair signature:
cWW-L-L-L-L-L-tHS-cWW

0.00 -196.15 9 8

151

Motif group IL_58103.4

Basepair signature:
cWW-L-L-cWS-tSW-cWW

0.00 -197.63 8 6

Symmetric double minor groove platform

152

Motif group IL_93585.1

Basepair signature:
cWW-L-L-L-tWH-cSH-L-cWW-cWW

0.00 -202.04 10 6

Kink-turn related

153

Motif group IL_34915.2

Basepair signature:
cWW-R-tWH-cSH-cWW

0.00 -202.78 6 5

Receptor of 11-nt loop-receptor motif

154

Motif group IL_31890.1

Basepair signature:
cWW-L-R-R-L-L-cWW

0.00 -205.16 10 7

155

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-L-L-L-L-cWW

0.00 -207.23 10 8

Reverse kink-turn related

156

Motif group IL_55896.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -210.00 5 4

Triple sheared

157

Motif group IL_06300.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -212.81 7 6

158

Motif group IL_46732.1

Basepair signature:
cWW-R-R-tHS-cWW

0.00 -217.06 9 6

159

Motif group IL_74719.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -218.40 6 4

Double sheared

160

Motif group IL_55666.1

Basepair signature:
cWW-R-cWH-L-L-L-cWW

0.00 -219.15 9 6

161

Motif group IL_23934.1

Basepair signature:
cWW-R-tWH-tHS-cWW

0.00 -219.15 7 6

tSH-tHW

162

Motif group IL_69421.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -220.12 8 5

163

Motif group IL_42521.1

Basepair signature:
cWW-L-L-cWW-cWW

0.00 -220.43 7 5

164

Motif group IL_78994.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -221.25 7 6

165

Motif group IL_68506.1

Basepair signature:
cWW-cWW-tSH-R-tHW-tHW-tWH-L-R-cWW-cWW

0.00 -221.44 12 8

166

Motif group IL_60171.1

Basepair signature:
cWW-L-tWH-R-R-R-cWW

0.00 -224.98 7 7

Major groove platform; stack outside cWW

167

Motif group IL_54896.1

Basepair signature:
cWW-L-L-L-L-L-L-tSS-cWW

0.00 -228.91 10 9

168

Motif group IL_39521.4

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -237.10 4 3

tSH-tWH-tHS

169

Motif group IL_90720.1

Basepair signature:
cWW-L-L-tHS-R-cWW

0.00 -238.59 6 5

170

Motif group IL_81522.1

Basepair signature:
cWW-cSH-L-cWS-cWW

0.00 -240.23 10 7

Major groove minor groove platform with intercalation; mini C-loop

171

Motif group IL_38810.1

Basepair signature:
cWW-L-cWW

0.00 -244.18 9 7

172

Motif group IL_51087.2

Basepair signature:
cWW-L-R-R-R-L-cWW

0.00 -247.32 6 4

173

Motif group IL_97601.6

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -249.90 6 5

Receptor of 11-nt loop-receptor motif

174

Motif group IL_09732.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -252.89 9 7

175

Motif group IL_42092.1

Basepair signature:
cWW-tSH-L-L-L-cWW

0.00 -256.36 9 6

Isolated basepair with bulged bases

176

Motif group IL_48280.1

Basepair signature:
cWW-tSH-R-cWW

0.00 -257.53 6 5

177

Motif group IL_90106.3

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -260.76 6 5

178

Motif group IL_81215.2

Basepair signature:
cWW-cWW-L-R-R-cWW

0.00 -261.07 7 6

179

Motif group IL_38634.3

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -261.41 7 6

cWH basepair and non-canonical AC

180

Motif group IL_85877.9

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -263.18 6 5

Tandem non-canonical cWW pairs

181

Motif group IL_19023.1

Basepair signature:
cWW-cHW-L-L-L-L-L-L-L-L-cWW

0.00 -263.75 10 9

182

Motif group IL_84315.1

Basepair signature:
cWW-tHS-cWS-R-tSW-R-R-cWW

0.00 -268.82 9 7

183

Motif group IL_56467.5

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -275.30 4 4

Triple sheared

184

Motif group IL_00559.1

Basepair signature:
cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-cWW-cWW

0.00 -279.72 16 13

185

Motif group IL_08757.2

Basepair signature:
cWW-tSH-tHW-cWW

0.00 -280.74 5 4

tSH-tHW

186

Motif group IL_56105.1

Basepair signature:
cWW-tHS-cSH-tHS-cWW

0.00 -282.36 8 6

187

Motif group IL_29978.3

Basepair signature:
cWW-L-L-L-tHS-cWW

0.00 -282.51 8 5

188

Motif group IL_81389.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -286.48 5 4

UAA/GAN related

189

Motif group IL_28564.1

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -288.82 8 6

190

Motif group IL_50676.4

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -294.66 9 6

Tandem non-canonical cWW pairs

191

Motif group IL_24905.8

Basepair signature:
cWW-cSW-R-cWW

0.00 -298.95 8 6

192

Motif group IL_98736.1

Basepair signature:
cWW-L-R-cSW-cWW

0.00 -301.00 9 8

Self complementary

193

Motif group IL_04106.2

Basepair signature:
cWW-cWW-cWW

0.00 -301.80 8 6

Isolated non-canonical cWW pair

194

Motif group IL_01312.10

Basepair signature:
cWW-cWW-cWW

0.00 -305.39 7 6

Isolated non-canonical cWW pair

195

Motif group IL_90600.1

Basepair signature:
cWW-R-R-tHS-cWW

0.00 -306.73 8 5

196

Motif group IL_51877.1

Basepair signature:
cWW-L-L-tWW-L-L-L-cWS-cWW

0.00 -307.48 9 8

197

Motif group IL_47154.3

Basepair signature:
cWW-cSW-L-R-cWW

0.00 -315.02 8 6

198

Motif group IL_82426.3

Basepair signature:
cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW

0.00 -315.03 9 9

Part of G-quadruplex

199

Motif group IL_53529.1

Basepair signature:
cWW-L-cWH-R-R-cWW

0.00 -321.78 7 6

200

Motif group IL_81326.2

Basepair signature:
cWW-L-cWW-cWW

0.00 -322.23 7 5

201

Motif group IL_52451.9

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -331.01 7 5

202

Motif group IL_20245.1

Basepair signature:
cWW-L-R-R-R-R-L-L-L-L-L-L-L-L-L-L-L-L-cWW-L-R-cWW

0.00 -339.73 16 15

203

Motif group IL_23544.2

Basepair signature:
cWW-L-R-R-cWW

0.00 -343.14 8 7

204

Motif group IL_45289.1

Basepair signature:
cWW-bif-cSH-cSW-cWW-cWW

0.00 -344.85 6 5

205

Motif group IL_14526.1

Basepair signature:
cWW-cWW-tWW-cWW

0.00 -345.85 9 6

tWW and non-canonical cWW

206

Motif group IL_63596.2

Basepair signature:
cWW-tWH-cSH-L-cWS-cWW

0.00 -346.08 7 5

C-loop

207

Motif group IL_50789.1

Basepair signature:
cWW-L-L-L-cWW

0.00 -357.79 10 8

208

Motif group IL_07931.4

Basepair signature:
cWW-tSH-cWW-cWW

0.00 -359.19 7 6

209

Motif group IL_86040.1

Basepair signature:
cWW-L-R-cSW-cSH-cWW

0.00 -359.96 8 6

210

Motif group IL_98882.2

Basepair signature:
cWW-R-cWW

0.00 -360.47 8 6

Decoding loop related

211

Motif group IL_09705.6

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -360.88 6 5

Double sheared

212

Motif group IL_44325.1

Basepair signature:
cWW-cWH-R-cWW

0.00 -361.93 7 6

213

Motif group IL_61300.1

Basepair signature:
cWW-cSS-L-tHW-tSS-L-L-L-L-L-L-cWW

0.00 -362.34 13 12

214

Motif group IL_53034.1

Basepair signature:
cWW-cWW-cWW

0.00 -362.66 9 6

215

Motif group IL_49655.1

Basepair signature:
cWW-tWW-L-R-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -370.26 20 17

216

Motif group IL_94878.1

Basepair signature:
cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW

0.00 -371.77 18 16

217

Motif group IL_61017.1

Basepair signature:
cWW-L-R-R-R-cWW

0.00 -374.99 7 6

218

Motif group IL_51366.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW

0.00 -375.84 14 12

219

Motif group IL_84158.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -378.66 10 8

Tandem non-canonical cWW pairs

220

Motif group IL_38044.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW

0.00 -379.90 15 14

221

Motif group IL_13394.1

Basepair signature:
cWW-L-R-R-R-R-tSS-R-R-R-R-R-R-R-R-L-L-L-cWW

0.00 -384.53 16 13

222

Motif group IL_13730.9

Basepair signature:
cWW-cWW

0.00 -386.21 7 7

Multiple bulged bases

223

Motif group IL_22615.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-cSH-R-R-L-tHH-tHS-cWW

0.00 -387.94 13 11

224

Motif group IL_92604.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -389.13 7 6

225

Motif group IL_74271.1

Basepair signature:
cWW-L-L-L-tWH-L-L-L-cWW

0.00 -393.40 10 8

226

Motif group IL_65055.1

Basepair signature:
cWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -394.26 20 17

227

Motif group IL_34626.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -397.63 8 7

228

Motif group IL_55662.1

Basepair signature:
cWW-L-L-L-L-L-L-L-L-L-cWW

0.00 -401.47 10 10

229

Motif group IL_01560.1

Basepair signature:
cWW-L-L-L-cSH-L-L-cWW

0.00 -402.04 11 9

230

Motif group IL_15795.1

Basepair signature:
cWW-cSH-R-cWW

0.00 -403.51 9 7

Minor groove platform

231

Motif group IL_80355.1

Basepair signature:
cWW-tWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -404.89 20 17

232

Motif group IL_60676.4

Basepair signature:
cWW-R-cWW

0.00 -406.23 7 5

233

Motif group IL_19569.2

Basepair signature:
cWW-L-L-L-L-cWW

0.00 -407.69 9 6

234

Motif group IL_46112.1

Basepair signature:
cWW-L-L-L-L-L-cWW

0.00 -414.71 12 9

235

Motif group IL_41414.1

Basepair signature:
cWW-cWW-R-R-cSH-R-bif-tWH-R-R-R-R-cWS-cWW

0.00 -416.78 13 12

236

Motif group IL_99373.2

Basepair signature:
cWW-bif-L-cWW

0.00 -423.28 8 6

237

Motif group IL_45944.2

Basepair signature:
cWW-L-L-tWH-L-L-L-cWW

0.00 -425.54 9 8

238

Motif group IL_18369.2

Basepair signature:
cWW-cSH-tHS-cWW

0.00 -426.19 9 5

239

Motif group IL_78030.1

Basepair signature:
cWW-L-R-R-cWW

0.00 -430.19 8 7

240

Motif group IL_38958.5

Basepair signature:
cWW-tHS-cWW

0.00 -432.09 5 5

Isolated tHS basepair with bulges

241

Motif group IL_02284.2

Basepair signature:
cWW-L-R-cWW

0.00 -434.95 7 6

242

Motif group IL_79734.1

Basepair signature:
cWW-R-R-R-R-cWW

0.00 -442.44 9 7

243

Motif group IL_37181.1

Basepair signature:
cWW-cWW-cWW

0.00 -444.53 8 7

Isolated non-canonical cWW pair

244

Motif group IL_95485.5

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -446.66 7 6

Major groove platform with extra cWW

245

Motif group IL_67474.2

Basepair signature:
cWW-R-R-cWW

0.00 -446.76 8 5

246

Motif group IL_96042.3

Basepair signature:
cWW-cWW-cSH-R-cWW

0.00 -446.90 7 6

Major groove minor groove platform with extra cWW

247

Motif group IL_14148.3

Basepair signature:
cWW-cWW-tSH-cWW

0.00 -451.86 7 6

Minor groove platform with extra cWW

248

Motif group IL_19557.1

Basepair signature:
cWW-L-cWW

0.00 -457.41 8 8

249

Motif group IL_27393.6

Basepair signature:
cWW-L-L-L-L-L-L-cWW

0.00 -457.86 10 8

250

Motif group IL_72938.1

Basepair signature:
cWW-cWW-cSH-cSH-tHS-cWW

0.00 -464.45 7 5

8-nt loop receptor

251

Motif group IL_58960.1

Basepair signature:
cWW-L-L-tWW-L-L-L-cWW

0.00 -467.06 8 8

252

Motif group IL_89731.1

Basepair signature:
cWW-R-tWH-R-R-R-cWW

0.00 -473.15 9 6

253

Motif group IL_45481.1

Basepair signature:
cWW-L-R-cHW-L-L-tSW-L-cWW

0.00 -473.95 12 11

254

Motif group IL_67621.4

Basepair signature:
cWW-cWS-cWW

0.00 -475.71 8 7

Isolated cWS basepair

255

Motif group IL_53738.1

Basepair signature:
cWW-R-R-R-R-R-R-R-R-R-R-cWW

0.00 -480.98 14 13

Pseudoknot

256

Motif group IL_39371.2

Basepair signature:
cWW-cWW

0.00 -484.45 8 7

257

Motif group IL_28060.3

Basepair signature:
cWW-tHH-L-cWS-R-cWW

0.00 -492.87 8 6

Major groove minor groove platform with tHH

258

Motif group IL_23663.4

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -495.51 7 6

259

Motif group IL_45034.1

Basepair signature:
cWW-L-L-L-L-L-L-cWW

0.00 -501.57 12 8

260

Motif group IL_15861.5

Basepair signature:
cWW-L-L-L-cSH-L-cWW

0.00 -502.42 9 8

SSU/LSU pseudoknot

261

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-tWH-tWH-tSS-L-L-L-bif-cWW-tSS-cSS-R-R-cWW

0.00 -502.90 12 10

Kink-turn related

262

Motif group IL_18459.1

Basepair signature:
cWW-cWW-R-cWW

0.00 -508.49 9 7

263

Motif group IL_24590.1

Basepair signature:
cWW-tHH-cWW

0.00 -518.18 9 7

264

Motif group IL_54997.4

Basepair signature:
cWW-tWW-cWW

0.00 -519.41 7 6

Isolated tWW turn

265

Motif group IL_08939.1

Basepair signature:
cWW-L-L-L-L-cWW

0.00 -520.80 11 8

266

Motif group IL_90348.1

Basepair signature:
cWW-R-R-R-cWW

0.00 -522.07 9 7

267

Motif group IL_90991.4

Basepair signature:
cWW-cWW

0.00 -525.20 9 6

Multiple bulged bases

268

Motif group IL_65075.1

Basepair signature:
cWW-L-L-cWW

0.00 -531.41 9 8

269

Motif group IL_87630.3

Basepair signature:
cWW-tSH-cSH-cWW

0.00 -546.18 8 6

Major groove platform with extra pair

270

Motif group IL_03470.1

Basepair signature:
cWW-R-R-R-cWW

0.00 -549.60 8 7

271

Motif group IL_04038.3

Basepair signature:
cWW-L-cWW

0.00 -570.97 8 6

Single stack bend

272

Motif group IL_19724.1

Basepair signature:
cWW-cSH-R-R-cWW

0.00 -573.93 9 7

273

Motif group IL_54678.2

Basepair signature:
cWW-cWW

0.00 -574.85 8 6

274

Motif group IL_36143.2

Basepair signature:
cWW-R-cWW

0.00 -577.42 8 7

275

Motif group IL_08376.2

Basepair signature:
cWW-tWH-tSW-L-cWW

0.00 -578.48 8.5 7

C-loop

276

Motif group IL_94431.4

Basepair signature:
cWW-cSH-cWS-cWW

0.00 -579.11 8 7

Minor groove platform

277

Motif group IL_80617.1

Basepair signature:
cWW-L-R-cWW

0.00 -600.06 9 8

Isolated non-canonical cWW contact

278

Motif group IL_51971.1

Basepair signature:
cWW-L-R-cWW

0.00 -600.06 9 8

Isolated non-canonical cWW contact

279

Motif group IL_77341.1

Basepair signature:
cWW-L-R-cWW

0.00 -602.38 9 8

280

Motif group IL_31504.1

Basepair signature:
cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW

0.00 -614.62 15 13

281

Motif group IL_24106.1

Basepair signature:
cWW-tSH-tWH-tWH-R-R-R-R-R-R-R-cWW

0.00 -616.04 12 11

282

Motif group IL_10543.1

Basepair signature:
cWW-L-R-cWW

0.00 -626.04 8 8

Isolated non-canonical cWW contact

283

Motif group IL_03932.2

Basepair signature:
cWW-tHS-cWW

0.00 -649.41 8 7

Major groove platform with intercalation

284

Motif group IL_16160.1

Basepair signature:
cWW-L-R-cWW

0.00 -652.39 10 9

Isolated non-canonical cWW pair

285

Motif group IL_42589.5

Basepair signature:
cWW-cHW-cWW

0.00 -655.82 8 7

Isolated cWH basepair

286

Motif group IL_59521.1

Basepair signature:
cWW-cWW

0.00 -659.06 9 8

287

Motif group IL_76195.1

Basepair signature:
cWW-L-L-cWW

0.00 -659.54 8 6

288

Motif group IL_35310.1

Basepair signature:
cWW-R-R-cWW

0.00 -684.79 9 7

Bulged stacked bases

289

Motif group IL_09061.3

Basepair signature:
cWW-cSW-cWW

0.00 -729.74 8 6

Major groove minor groove platform; mini C-loop

290

Motif group IL_27900.1

Basepair signature:
cWW-tSH-cWW

0.00 -750.77 9 7

Minor groove platform

291

Motif group IL_55658.1

Basepair signature:
cWW-L-L-cWW

0.00 -751.99 10 7

292

Motif group IL_94592.1

Basepair signature:
cWW-cWW

0.00 -772.06 9 8

Single bulged U

293

Motif group IL_68741.1

Basepair signature:
cWW-R-R-R-cWW

0.00 -780.61 8 7

294

Motif group IL_93270.1

Basepair signature:
cWW-L-L-cWS-cWW

0.00 -823.81 9 7

Minor groove platform

295

Motif group IL_19389.4

Basepair signature:
cWW-L-cSH-cWW

0.00 -824.36 9 7

Major groove platform with intercalated tWH

296

Motif group IL_91036.1

Basepair signature:
cWW-R-R-cWW

0.00 -838.26 9 7

297

Motif group IL_07342.2

Basepair signature:
cWW-cWW

0.00 -858.52 8 7

Bulged stacked bases

298

Motif group IL_77771.1

Basepair signature:
cWW-L-L-cWW

0.00 -858.54 10 7

299

Motif group IL_02060.2

Basepair signature:
cWW-cHH-cWW

0.00 -869.56 8 7

Major groove platform

300

Motif group IL_94181.3

Basepair signature:
cWW-L-cWW

0.00 -873.49 8 7

Intercalated cWS

301

Motif group IL_14266.1

Basepair signature:
cWW-R-cWW

0.00 -875.80 8 7

302

Motif group IL_71960.4

Basepair signature:
cWW-cSH-cWW

0.00 -881.91 9 8

Minor groove platform

303

Motif group IL_80007.14

Basepair signature:
cWW-cWW

0.00 -905.00 8 8

Single bulged A

304

Motif group IL_80663.8

Basepair signature:
cWW-tHS-cSH-cWW

0.00 -911.82 8 7

Major groove platform

305

Motif group IL_06437.8

Basepair signature:
cWW-tSH-cWW

0.00 -914.16 8 7

Minor groove platform

306

Motif group IL_59137.8

Basepair signature:
cWW-cWW

0.00 -919.06 8 8

Single bulged G

307

Motif group IL_70995.5

Basepair signature:
cWW-tSH-L-cWW

0.00 -932.02 8 7

Major groove platform; stack outside cWW

308

Motif group IL_81328.5

Basepair signature:
cWW-R-cWW

0.00 -934.88 8 8

Major groove intercalation

309

Motif group IL_83039.9

Basepair signature:
cWW-cWW

0.00 -1013.71 8 8

Single bulged U

310

Motif group IL_61258.7

Basepair signature:
cWW-cWW

0.00 -1014.79 9 9

Single bulged C

311

Motif group IL_75560.1

Basepair signature:
cWW-cWW

0.00 -1017.23 9 8

Single bulged A

312

Motif group IL_85053.1

Basepair signature:
cWW-cWW

0.00 -1017.56 9 8

Single bulged G

313

Motif group IL_99645.1

Basepair signature:
cWW-cWW

0.00 -1022.62 11 8

Single bulged G

314

Motif group IL_40508.3

Basepair signature:
cWW-cWW

0.00 -1068.85 8 8

Major groove intercalation

315

Motif group IL_96600.1

Basepair signature:
cWW-cWW

0.00 -1078.26 10 8

Single bulged U

316

Motif group IL_67834.1

Basepair signature:
cWW-R-R-R-R-R-R-tWW-R-R-R-R-R-R-R-R-R-R-R-R-cWW

0.00 -4448.78 22 20

317

Motif group IL_84409.1

Basepair signature:
cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW

0.00 -4514.83 15 14

318

Motif group IL_60992.4

Basepair signature:
cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW

0.00 -5313.15 12 9

319

Motif group IL_17765.1

Basepair signature:
cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW

0.00 -5358.48 11 9

320

Motif group IL_75283.1

Basepair signature:
cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW

0.00 -5465.26 13 11

321

Motif group IL_35904.1

Basepair signature:
cWW-tSH-tSS-tSS-R-R-R-R-cWW

0.00 -6908.49 8 5

Kink-turn

322

Motif group IL_83121.6

Basepair signature:
cWW-cSS-R-cWW

0.00 -9999.00 9 8

Coloring options: