RNA 3D Hub

JAR3D Query RF03064-3.48 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 4 Internal loop

Column numbers: 66-70, 114-119 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    U--AU*A----A   54

    
    G-UAU*AU---C   43

    
    U--AG*C----A   32

    
    A-UCU*AG---U   28

    
    A-UAU*AU---U   22

    
    U--AC*GU---A   20

    
    U-UAU*AU---A   14

    
    C--AG*C----G   14

    
    A---G*C----U   14

    
    A-UUU*AAA--U   13

    
    A-UUU*AA---U   13

    
    U--AG*C----G   12

    
    U-UAC*GUU--U   11

    
    U---A*U----A   10

    
    A-UUU*AG---U    9

    
    U--AU*AU---U    9

    
    C-UUU*AAA--G    8

    
    G-UAU*AAU--C    8

    
    G-UCU*AG---C    8

    
    G--AG*UU---G    8

    
    U--GG*C----A    8

    
    U--UG*C----A    7

    
    A---U*A----U    7

    
    A-UAU*AAU--U    6

    
    A-UCC*GUU--U    6

    
    A-CAU*GU---U    6

    
    C-UCA*UG---G    6

    
    G--AG*CGU--G    6

    
    U-UGA*UC---A    6

    
    A--CG*C----U    6

    
    G--UG*C----C    6

    
    U--A-*U----A    6

    
    U-UUU*AAA--A    5

    
    C-UAA*UU---G    5

    
    U-UU-*AAA--A    5

    
    G--AG*U----G    5

    
    G--AU*A----C    5

    
    C---A*U----G    5

    
    U---G*C----U    5

    
    GAUAA*UUA--C    4

    
    U-UUU*AAG--A    4

    
    A-UUU*GA---U    4

    
    AAUUA*U----U    4

    
    C-UAU*AA---G    4

    
    U-UGU*AU---G    4

    
    U--UU*AA---A    4

    
    A--AU*U----U    4

    
    C-U-G*C----G    4

    
    G--AA*U----C    4

    
    U--GC*G----A    4

    
    U-UUU*AUAAAA    3

    
    G--AU*AUAGAC    3

    
    GUUGC*GAA--C    3

    
    A-GUG*CGC--U    3

    
    A-UAC*GUU--U    3

    
    A-UUA*UAG--U    3

    
    C-UUU*AGA--G    3

    
    G-UGU*GAC--C    3

    
    U-UGC*GAC--A    3

    
    U-UUA*UUU--A    3

    
    A-UUU*AU---U    3

    
    C-UGC*GC---G    3

    
    G-UGU*AU---C    3

    
    G-UUU*AU---C    3

    
    U-GUU*AA---A    3

    
    U-UAU*AU---G    3

    
    U-UGU*AG---G    3

    
    U-UGU*GC---A    3

    
    C--AC*GU---U    3

    
    C-UGU*C----G    3

    
    G---U*GAC--C    3

    
    G-UA-*-AU--C    3

    
    A--AG*C----U    3

    
    C--AG*C----C    3

    
    U--AC*G----G    3

    
    A---A*U----U    3

    
    A-UAA*UUA--U    2

    
    A-UAU*AGU--U    2

    
    U-GUG*CAU--A    2

    
    U-UGA*UCU--G    2

    
    U-UGC*GUU--U    2

    
    U-UGU*AGU--G    2

    
    U-UUG*CAU--U    2

    
    U-UUU*AAG--G    2

    
    A-GUU*AA---U    2

    
    A-UAA*UA---U    2

    
    A-UAU*GU---U    2

    
    A-UCU*AG---G    2

    
    A-UGC*GC---U    2

    
    C-GGU*GC---G    2

    
    G-AUU*AA---C    2

    
    G-UAU*AU---U    2

    
    G-UCU*AG---U    2

    
    U-UUU*AA---G    2

    
    A--AU*GA---U    2

    
    A-UUU*A----U    2

    
    AAUU-*U----U    2

    
    C---C*GAG--G    2

    
    C--AG*CC---G    2

    
    C-AAG*C----G    2

    
    U---A*UAG--A    2

    
    U---G*CAG--G    2

    
    U---G*CGG--A    2

    
    U--AA*UU---A    2

    
    U--AC*GU---U    2

    
    --AAG*UA----    2

    
    --UAG*CG----    2

    
    A--UG*C----U    2

    
    A-UA-*A----U    2

    
    C--AC*G----G    2

    
    G--AG*C----C    2

    
    G--AG*U----A    2

    
    U--AA*U----A    2

    
    U--AG*U----G    2

    
    A--A-*-U---A    2

    
    G--A-*U----C    2

    
    U---C*G----A    2

    
    AGUAA*UUCGCU    1

    
    GUUGG*CGGAAC    1

    
    UAGAU*AUAUCA    1

    
    UCGAA*GUAAGG    1

    
    A-UCU*AUUGAU    1

    
    C-UGU*GUAACG    1

    
    C-UUU*AUCUAG    1

    
    C-UUU*GUGAAG    1

    
    U-GAG*CAAAAU    1

    
    U-GUG*CUCAUA    1

    
    U-GUG*CUCAUG    1

    
    UUUAA*UU-UUA    1

    
    A-UUU*-UCAAU    1

    
    ACGCU*AAC--U    1

    
    CAGUC*GGC--G    1

    
    CAUGC*GUA--A    1

    
    CUCAG*CUG--G    1

    
    GAGAC*GUU--A    1

    
    GAUUA*UAU--C    1

    
    GAUUG*CAU--C    1

    
    GUUGC*GAA--U    1

    
    UGUAG*CAU--A    1

    
    UGUUG*CAC--A    1

    
    A-AUA*UAU--U    1

    
    A-CGC*AAC--U    1

    
    A-GAU*AUC--U    1

    
    A-GUG*UGC--U    1

    
    A-UAC*GUA--U    1

    
    A-UAU*GAU--U    1

    
    A-UCG*CGA--U    1

    
    A-UUG*CAG--U    1

    
    A-UUU*AAU--U    1

    
    ACUAC*GGA---    1

    
    C-AAG*GAU--G    1

    
    C-AAU*--CACG    1

    
    C-UAA*UUU--G    1

    
    C-UGU*GAC--G    1

    
    C-UUA*UAA--U    1

    
    C-UUU*AAG--G    1

    
    C-UUU*GGA--G    1

    
    G-UGA*UUU--C    1

    
    G-UGU*AAC--C    1

    
    G-UUU*AGA--U    1

    
    GGUUG*---GAC    1

    
    U-CUA*UUU--A    1

    
    U-GAA*UUU--A    1

    
    U-UAC*GGC--A    1

    
    U-UAC*GGU--A    1

    
    U-UAC*GUA--U    1

    
    U-UAC*GUC--U    1

    
    U-UAU*AUU--U    1

    
    U-UAU*GAC--A    1

    
    U-UGA*UCU--A    1

    
    U-UUA*UAA--A    1

    
    U-UUA*UAA--U    1

    
    U-UUU*GAA--G    1

    
    UAGAU*UU---A    1

    
    A--AU*GUU--U    1

    
    A--CC*GAU--A    1

    
    A-AAU*AU---U    1

    
    A-CAU*AU---U    1

    
    A-GCU*GU---U    1

    
    A-UAC*GU---U    1

    
    A-UAU*AA---U    1

    
    A-UCU*AGG---    1

    
    A-UGU*AC---U    1

    
    A-UGU*AU---U    1

    
    A-UUC*GA---U    1

    
    A-UUU*AA---C    1

    
    A-UUU*CA---U    1

    
    AAUGA*U----U    1

    
    AAUUU*A----U    1

    
    AGUAA*U----U    1

    
    C--AC*GAU--G    1

    
    C--AG*UAU--G    1

    
    C--UU*GAG--G    1

    
    C-UAA*UU---A    1

    
    C-UAA*UU---U    1

    
    C-UAU*AU---G    1

    
    C-UAU*AUU---    1

    
    C-UGU*AC---G    1

    
    C-UGU*GC---G    1

    
    CGGCU*A----G    1

    
    G--UG*AAC--C    1

    
    G-AAU*AU---C    1

    
    G-CAU*AU---C    1

    
    G-CCU*AG---U    1

    
    G-GUU*GA---C    1

    
    G-UAU*AC---C    1

    
    G-UAU*AC---G    1

    
    G-UAU*AU---A    1

    
    G-UCU*AG---G    1

    
    G-UGC*GU---G    1

    
    G-UGU*AC---U    1

    
    G-UUU*AA---C    1

    
    G-UUU*AA---U    1

    
    U---A*UGUU-A    1

    
    U--AU*UAA--A    1

    
    U--UU*AAG--G    1

    
    U-ACA*UU---A    1

    
    U-AGU*AG---G    1

    
    U-AGU*AU---G    1

    
    U-GAU*AU---A    1

    
    U-U-C*GCG--G    1

    
    U-UAA*UA---A    1

    
    U-UAA*UU---A    1

    
    U-UAU*AA---A    1

    
    U-UAU*AG---A    1

    
    U-UAU*AU---U    1

    
    U-UCA*UG---G    1

    
    U-UGA*UU---A    1

    
    U-UGC*GC---G    1

    
    U-UGU*AU---A    1

    
    UACAA*U----A    1

    
    --UAU*AUU---    1

    
    A---A*UAU--U    1

    
    A---U*AGC--U    1

    
    A--AC*-AU--U    1

    
    A--AU*AU---U    1

    
    A--UG*UG---U    1

    
    A-UA-*UA---U    1

    
    A-UCU*G----U    1

    
    A-UGU*C----U    1

    
    A-UU-*---AAU    1

    
    C---G*UUU--G    1

    
    C---U*GAG--G    1

    
    C--AG*CA---G    1

    
    C--AU*AA---G    1

    
    C--CU*AA---G    1

    
    C--GU*AA---G    1

    
    C-AUC*G----G    1

    
    C-GGG*C----G    1

    
    C-U-U*AA---G    1

    
    C-UAG*UA----    1

    
    CUUA-*A----G    1

    
    G---U*AAC--C    1

    
    G---U*AGC--C    1

    
    G--AA*UU---G    1

    
    G--AU*GA---U    1

    
    G--UG*CA---U    1

    
    G-UAU*----UC    1

    
    GAUA-*A----C    1

    
    U---A*UAU--A    1

    
    U---C*GAG--G    1

    
    U---G*CAU--A    1

    
    U--AU*AA---A    1

    
    U--AU*AU---A    1

    
    U--AU*AU---G    1

    
    U--GU*AU---A    1

    
    U--UG*CA---A    1

    
    U-CGA*--U--A    1

    
    U-CGA*-U---A    1

    
    U-U-G*CU---U    1

    
    U-U-G*UU---U    1

    
    U-UAC*U----U    1

    
    U-UCU*G----U    1

    
    U-UG-*-AA--A    1

    
    U-UGU*C----A    1

    
    U-UU-*-AA--A    1

    
    U-UUG*C----A    1

    
    U-UUU*A----A    1

    
    U-UUU*A----G    1

    
    ---AG*CUA---    1

    
    ---AU*AAA---    1

    
    --AAG*CA----    1

    
    --GAG*CA----    1

    
    A---A*UU---U    1

    
    A---U*---AAU    1

    
    A---U*GA---U    1

    
    A--AA*U----U    1

    
    A--GG*C----U    1

    
    A-AA-*U----U    1

    
    A-U-G*C----U    1

    
    A-U-U*A----U    1

    
    C---U*AA---A    1

    
    C---U*AA---G    1

    
    C--CG*C----U    1

    
    C--UU*G----G    1

    
    C-AA-*--U--G    1

    
    CGG--*A----G    1

    
    G--AA*U----U    1

    
    G--UG*C----U    1

    
    G-U-G*C----C    1

    
    U---G*UU---U    1

    
    U---U*AA---A    1

    
    U--A-*-GU--A    1

    
    U--AC*G----A    1

    
    U--AU*A----G    1

    
    U--AU*A----U    1

    
    U--AU*U----A    1

    
    U--CG*C----A    1

    
    U--GU*A----A    1

    
    U--UG*C----G    1

    
    U-CG-*--G--A    1

    
    U-U-A*U----A    1

    
    U-UA-*--U--A    1

    
    U-UA-*A----A    1

    
    ---AC*AA----    1

    
    A---C*C----U    1

    
    A---C*G----U    1

    
    A--A-*U----A    1

    
    G---A*U----G    1

    
    G---G*C----C    1

    
    G---G*C----U    1

    
    G-U--*A----C    1

    
    U---A*U----G    1

    
    U---G*U----A    1

    
    U---U*A----G    1

    
    U---U*A----U    1

    
    U--A-*--U--A    1

    
    Omitted sequenced and counts

    
    U----*-----G   89

    
    U-UA-*-----G   55

    
    -----*------   34

    
    U-UC-*-----G   32

    
    --AA-*------   30

    
    U-U--*-----A   27

    
    U-U--*-----G   19

    
    C-UU-*-----G   18

    
    U--A-*-----A   18

    
    G--A-*-----G   17

    
    U--A-*-----G   15

    
    U-UU-*-----G   12

    
    A----*-----U   11

    
    U-AA-*-----G   10

    
    C-U--*-----G    9

    
    C----*-----G    8

    
    G----*-----G    6

    
    C-CA-*-----G    5

    
    U-UU-*-----A    5

    
    A-G--*-----U    5

    
    G--A-*--G---    5

    
    U----*-----A    5

    
    A-UA-*-----U    4

    
    G-UA-*-----U    4

    
    G--A-*-----C    4

    
    G--A-*-----U    4

    
    U-U--*-----U    4

    
    UUUA-*-----A    3

    
    C-AA-*-----G    3

    
    C-UC-*-----G    3

    
    U-UA-*-----A    3

    
    U-UA-*-----U    3

    
    C--A-*-----G    3

    
    C-UAA*-----G    2

    
    CGCA-*-----G    2

    
    UAUA-*-----G    2

    
    UCUA-*-----A    2

    
    UUUU-*-----A    2

    
    A-UC-*-----U    2

    
    A-UU-*-----U    2

    
    C----*-AA--G    2

    
    C-GA-*-----G    2

    
    C-UA-*-----G    2

    
    C-UU-*-----A    2

    
    CAU--*-----G    2

    
    G-UC-*-----G    2

    
    A-U--*-----G    2

    
    A-U--*-----U    2

    
    G----*C----C    2

    
    G-U--*-----C    2

    
    U-A--*-----G    2

    
    A----*-----C    2

    
    G----*-----C    2

    
    A-UAU*A-----    1

    
    GGUU-*-----C    1

    
    U-UAG*-----A    1

    
    UAUU-*-----A    1

    
    UUUA-*-----G    1

    
    UUUA-*-----U    1

    
    A-GA-*-----U    1

    
    A-UG-*-----U    1

    
    A-UU-*-----A    1

    
    A-UU-*-----G    1

    
    C-GC-*-----G    1

    
    C-UG-*-----G    1

    
    G----*AG---G    1

    
    G-UA-*-----G    1

    
    GGU--*-----C    1

    
    U--AU*-----A    1

    
    U-CA-*-----G    1

    
    U-GA-*-----A    1

    
    U-GG-*-----A    1

    
    U-UU-*-----C    1

    
    A--A-*-----C    1

    
    A--A-*-----G    1

    
    A--A-*-----U    1

    
    C-A--*-----G    1

    
    C-C--*-----G    1

    
    C-U--*-----A    1

    
    G---A*-----G    1

    
    G-U--*-----G    1

    
    U-U--*-----C    1

    
    G----*-----U    1

    
    U----*-----U    1

    
    U-U--*------    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_54678.2

Basepair signature:
cWW-cWW

57.83 -0.58 3 1

2

Motif group IL_39371.2

Basepair signature:
cWW-cWW

42.29 -40.89 4 2

3

Motif group IL_59521.1

Basepair signature:
cWW-cWW

41.49 -31.79 4 2

4

Motif group IL_94592.1

Basepair signature:
cWW-cWW

39.54 -44.05 4 2

Single bulged U

5

Motif group IL_98882.2

Basepair signature:
cWW-R-cWW

37.94 -13.42 4 2

Decoding loop related

6

Motif group IL_13730.9

Basepair signature:
cWW-cWW

37.26 -15.11 3 1

Multiple bulged bases

7

Motif group IL_04038.3

Basepair signature:
cWW-L-cWW

36.46 -43.54 3 1

Single stack bend

8

Motif group IL_75560.1

Basepair signature:
cWW-cWW

35.66 -69.19 4 2

Single bulged A

9

Motif group IL_80007.14

Basepair signature:
cWW-cWW

35.09 -114.21 2 2

Single bulged A

10

Motif group IL_60676.4

Basepair signature:
cWW-R-cWW

32.80 -37.68 4 2

11

Motif group IL_83039.9

Basepair signature:
cWW-cWW

32.80 -99.67 2 2

Single bulged U

12

Motif group IL_94181.3

Basepair signature:
cWW-L-cWW

32.57 -56.04 3 2

Intercalated cWS

13

Motif group IL_04106.2

Basepair signature:
cWW-cWW-cWW

32.34 -39.88 4 2

Isolated non-canonical cWW pair

14

Motif group IL_81328.5

Basepair signature:
cWW-R-cWW

31.89 -68.46 3 2

Major groove intercalation

15

Motif group IL_14266.1

Basepair signature:
cWW-R-cWW

31.66 -76.86 4 2

16

Motif group IL_40508.3

Basepair signature:
cWW-cWW

31.66 -107.43 4 2

Major groove intercalation

17

Motif group IL_15795.1

Basepair signature:
cWW-cSH-R-cWW

30.86 -143.87 5 3

Minor groove platform

18

Motif group IL_85053.1

Basepair signature:
cWW-cWW

30.17 -100.53 5 3

Single bulged G

19

Motif group IL_37181.1

Basepair signature:
cWW-cWW-cWW

29.94 -57.64 4 2

Isolated non-canonical cWW pair

20

Motif group IL_99645.1

Basepair signature:
cWW-cWW

29.83 -102.44 5 3

Single bulged G

21

Motif group IL_59137.8

Basepair signature:
cWW-cWW

29.60 -119.68 3 2

Single bulged G

22

Motif group IL_19557.1

Basepair signature:
cWW-L-cWW

29.14 -88.06 5 3

23

Motif group IL_96600.1

Basepair signature:
cWW-cWW

29.14 -102.15 5 2

Single bulged U

24

Motif group IL_01312.10

Basepair signature:
cWW-cWW-cWW

28.80 -40.06 2 1

Isolated non-canonical cWW pair

25

Motif group IL_61258.7

Basepair signature:
cWW-cWW

28.57 -137.67 3 2

Single bulged C

26

Motif group IL_71960.4

Basepair signature:
cWW-cSH-cWW

25.94 -101.42 5 2

Minor groove platform

27

Motif group IL_02284.2

Basepair signature:
cWW-L-R-cWW

25.60 -55.06 5 2

28

Motif group IL_80663.8

Basepair signature:
cWW-tHS-cSH-cWW

25.03 -108.12 3 2

Major groove platform

29

Motif group IL_23544.2

Basepair signature:
cWW-L-R-R-cWW

24.57 -38.54 5 3

30

Motif group IL_81326.2

Basepair signature:
cWW-L-cWW-cWW

24.57 -44.41 3 2

31

Motif group IL_06437.8

Basepair signature:
cWW-tSH-cWW

24.11 -117.99 2 2

Minor groove platform

32

Motif group IL_18459.1

Basepair signature:
cWW-cWW-R-cWW

23.43 -73.70 5 2

33

Motif group IL_78030.1

Basepair signature:
cWW-L-R-R-cWW

22.74 -51.60 5 2

34

Motif group IL_02060.2

Basepair signature:
cWW-cHH-cWW

22.40 -136.03 4 2

Major groove platform

35

Motif group IL_07931.4

Basepair signature:
cWW-tSH-cWW-cWW

21.83 -89.15 5 3

36

Motif group IL_95485.5

Basepair signature:
cWW-cSH-cWW-cWW

21.49 -98.87 4 2

Major groove platform with extra cWW

37

Motif group IL_03932.2

Basepair signature:
cWW-tHS-cWW

20.23 -89.71 4 2

Major groove platform with intercalation

38

Motif group IL_34626.3

Basepair signature:
cWW-L-R-L-cWW

19.77 -68.33 5 2

39

Motif group IL_55658.1

Basepair signature:
cWW-L-L-cWW

19.77 -89.60 5 3

40

Motif group IL_91036.1

Basepair signature:
cWW-R-R-cWW

19.66 -98.27 4 3

41

Motif group IL_27900.1

Basepair signature:
cWW-tSH-cWW

18.40 -113.88 4 2

Minor groove platform

42

Motif group IL_14148.3

Basepair signature:
cWW-cWW-tSH-cWW

18.17 -92.38 4 2

Minor groove platform with extra cWW

43

Motif group IL_67474.2

Basepair signature:
cWW-R-R-cWW

17.37 -62.89 4 2

44

Motif group IL_76195.1

Basepair signature:
cWW-L-L-cWW

17.14 -88.54 5 2

45

Motif group IL_92604.1

Basepair signature:
cWW-L-R-L-cWW

16.34 -71.46 5 2

46

Motif group IL_07342.2

Basepair signature:
cWW-cWW

16.11 -123.91 4 2

Bulged stacked bases

47

Motif group IL_94431.4

Basepair signature:
cWW-cSH-cWS-cWW

13.94 -124.14 4 2

Minor groove platform

48

Motif group IL_67621.4

Basepair signature:
cWW-cWS-cWW

13.60 -76.04 3 2

Isolated cWS basepair

49

Motif group IL_83121.6

Basepair signature:
cWW-cSS-R-cWW

13.49 -797.14 4 2

50

Motif group IL_85877.9

Basepair signature:
cWW-cWW-cWW-cWW

10.29 -147.17 3 2

Tandem non-canonical cWW pairs

51

Motif group IL_24590.1

Basepair signature:
cWW-tHH-cWW

9.94 -79.12 6 2

52

Motif group IL_98736.1

Basepair signature:
cWW-L-R-cSW-cWW

8.57 -61.89 7 3

Self complementary

53

Motif group IL_38958.5

Basepair signature:
cWW-tHS-cWW

8.46 -75.56 4 2

Isolated tHS basepair with bulges

54

Motif group IL_78994.1

Basepair signature:
cWW-cSW-cWW-cWW

8.34 -95.13 5 3

55

Motif group IL_31890.1

Basepair signature:
cWW-L-R-R-L-L-cWW

7.31 -69.13 7 4

56

Motif group IL_54997.4

Basepair signature:
cWW-tWW-cWW

6.97 -87.29 4 2

Isolated tWW turn

57

Motif group IL_10543.1

Basepair signature:
cWW-L-R-cWW

6.86 -79.04 4 2

Isolated non-canonical cWW contact

58

Motif group IL_28564.1

Basepair signature:
cWW-L-R-cWW-cWW

6.63 -75.98 6 4

59

Motif group IL_80617.1

Basepair signature:
cWW-L-R-cWW

6.06 -82.27 5 2

Isolated non-canonical cWW contact

60

Motif group IL_51971.1

Basepair signature:
cWW-L-R-cWW

6.06 -82.27 5 2

Isolated non-canonical cWW contact

61

Motif group IL_77341.1

Basepair signature:
cWW-L-R-cWW

6.06 -83.07 6 2

62

Motif group IL_19389.4

Basepair signature:
cWW-L-cSH-cWW

6.06 -109.86 4 2

Major groove platform with intercalated tWH

63

Motif group IL_84158.1

Basepair signature:
cWW-cWW-cWW-cWW

5.49 -127.83 5 3

Tandem non-canonical cWW pairs

64

Motif group IL_16160.1

Basepair signature:
cWW-L-R-cWW

5.14 -86.93 5 2

Isolated non-canonical cWW pair

65

Motif group IL_87630.3

Basepair signature:
cWW-tSH-cSH-cWW

4.11 -110.81 4 2

Major groove platform with extra pair

66

Motif group IL_65075.1

Basepair signature:
cWW-L-L-cWW

3.54 -55.18 5 2

67

Motif group IL_42521.1

Basepair signature:
cWW-L-L-cWW-cWW

3.09 -64.05 5 3

68

Motif group IL_92343.1

Basepair signature:
cWW-L-R-R-R-L-L-cWW

2.97 -84.29 7 5

69

Motif group IL_09732.5

Basepair signature:
cWW-cWW-L-R-L-cWW

2.86 -92.33 6 4

70

Motif group IL_81215.2

Basepair signature:
cWW-cWW-L-R-R-cWW

2.86 -103.14 5 3

71

Motif group IL_50676.4

Basepair signature:
cWW-cWW-cWW-cWW

2.86 -133.95 6 3

Tandem non-canonical cWW pairs

72

Motif group IL_06300.1

Basepair signature:
cWW-tSH-L-R-L-cWW

2.74 -92.96 6 3

73

Motif group IL_23663.4

Basepair signature:
cWW-cWW-cSH-cWW

2.74 -107.83 5 2

74

Motif group IL_42589.5

Basepair signature:
cWW-cHW-cWW

2.63 -103.00 3 1

Isolated cWH basepair

75

Motif group IL_69421.1

Basepair signature:
cWW-cWW-tHH-cWW

2.06 -115.70 6 4

76

Motif group IL_09061.3

Basepair signature:
cWW-cSW-cWW

1.83 -245.59 3 2

Major groove minor groove platform; mini C-loop

77

Motif group IL_99373.2

Basepair signature:
cWW-bif-L-cWW

1.60 -98.91 5 2

78

Motif group IL_44325.1

Basepair signature:
cWW-cWH-R-cWW

1.49 -110.60 6 3

79

Motif group IL_38810.1

Basepair signature:
cWW-L-cWW

1.37 -97.98 5 4

80

Motif group IL_48280.1

Basepair signature:
cWW-tSH-R-cWW

1.37 -115.68 6 3

81

Motif group IL_70995.5

Basepair signature:
cWW-tSH-L-cWW

1.37 -232.13 3 2

Major groove platform; stack outside cWW

82

Motif group IL_77771.1

Basepair signature:
cWW-L-L-cWW

1.26 -120.69 5 2

83

Motif group IL_08757.2

Basepair signature:
cWW-tSH-tHW-cWW

1.26 -164.32 5 3

tSH-tHW

84

Motif group IL_09705.6

Basepair signature:
cWW-tSH-tHS-cWW

1.26 -176.64 4 2

Double sheared

85

Motif group IL_50789.1

Basepair signature:
cWW-L-L-L-cWW

1.14 -74.30 6 3

86

Motif group IL_61017.1

Basepair signature:
cWW-L-R-R-R-cWW

1.14 -97.11 5 3

87

Motif group IL_81522.1

Basepair signature:
cWW-cSH-L-cWS-cWW

1.14 -137.09 6 4

Major groove minor groove platform with intercalation; mini C-loop

88

Motif group IL_68741.1

Basepair signature:
cWW-R-R-R-cWW

1.14 -140.51 5 3

89

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

1.03 -99.26 7 5

Kink-turn related

90

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-cWW-cWW

0.91 -98.58 7 5

91

Motif group IL_36143.2

Basepair signature:
cWW-R-cWW

0.80 -99.49 6 3

92

Motif group IL_74980.1

Basepair signature:
cWW-L-R-cWW-cWW-cWW

0.80 -109.60 7 5

93

Motif group IL_90348.1

Basepair signature:
cWW-R-R-R-cWW

0.80 -138.54 6 4

94

Motif group IL_51087.2

Basepair signature:
cWW-L-R-R-R-L-cWW

0.80 -143.10 5 4

95

Motif group IL_35310.1

Basepair signature:
cWW-R-R-cWW

0.80 -143.30 6 4

Bulged stacked bases

96

Motif group IL_01963.1

Basepair signature:
cWW-L-R-R-R-cSH-cWW

0.69 -98.68 7 5

97

Motif group IL_53034.1

Basepair signature:
cWW-cWW-cWW

0.69 -126.90 5 3

98

Motif group IL_23934.1

Basepair signature:
cWW-R-tWH-tHS-cWW

0.57 -105.19 6 4

tSH-tHW

99

Motif group IL_79393.7

Basepair signature:
cWW-L-R-R-L-L-L-L-cWW

0.57 -119.60 7 5

100

Motif group IL_03470.1

Basepair signature:
cWW-R-R-R-cWW

0.57 -148.98 6 4

101

Motif group IL_47108.1

Basepair signature:
cWW-tHH-L-R-R-R-cWW

0.46 -113.40 7 5

102

Motif group IL_14526.1

Basepair signature:
cWW-cWW-tWW-cWW

0.46 -182.33 6 3

tWW and non-canonical cWW

103

Motif group IL_82988.1

Basepair signature:
cWW-cWW-L-L-tHS-cWW

0.34 -120.26 7 5

104

Motif group IL_66745.4

Basepair signature:
cWW-cWW-L-R-cWW-cWW

0.34 -123.28 6 4

105

Motif group IL_58346.1

Basepair signature:
cWW-cSH-R-R-R-L-cWW-cWW

0.34 -138.26 8 6

106

Motif group IL_51590.1

Basepair signature:
cWW-cSH-tWH-cSH-cWW-cWW

0.34 -341.23 7 4

C-loop with extra cWW pair

107

Motif group IL_97601.6

Basepair signature:
cWW-tWH-cSH-cWW

0.23 -134.00 5 3

Receptor of 11-nt loop-receptor motif

108

Motif group IL_47154.3

Basepair signature:
cWW-cSW-L-R-cWW

0.23 -151.10 6 4

109

Motif group IL_19724.1

Basepair signature:
cWW-cSH-R-R-cWW

0.23 -164.75 5 4

110

Motif group IL_75461.2

Basepair signature:
cWW-cSS-L-R-R-cWW

0.23 -2737.28 6 4

180 degree turn

111

Motif group IL_60695.5

Basepair signature:
cWW-L-R-R-R-R-cWW

0.11 -103.73 6 5

112

Motif group IL_34915.2

Basepair signature:
cWW-R-tWH-cSH-cWW

0.11 -107.40 5 3

Receptor of 11-nt loop-receptor motif

113

Motif group IL_61275.1

Basepair signature:
cWW-L-R-tHW-cWW

0.11 -108.20 7 5

114

Motif group IL_20549.1

Basepair signature:
cWW-tWH-cSH-cWW

0.11 -119.32 6 4

Receptor of 11-nt loop-receptor motif

115

Motif group IL_73399.1

Basepair signature:
cWW-L-R-R-R-cWW

0.11 -122.29 7 5

116

Motif group IL_56105.1

Basepair signature:
cWW-tHS-cSH-tHS-cWW

0.11 -167.96 5 4

117

Motif group IL_90106.3

Basepair signature:
cWW-tHH-tHS-cWW

0.11 -175.46 5 3

118

Motif group IL_98353.1

Basepair signature:
cWW-cWS-L-L-cWW

0.11 -299.83 8 6

119

Motif group IL_08376.2

Basepair signature:
cWW-tWH-tSW-L-cWW

0.11 -455.43 5 3

C-loop

120

Motif group IL_47743.1

Basepair signature:
cWW-cSW-tWH-cSH-L-cWS-cWW

0.11 -522.20 7 5

121

Motif group IL_46732.1

Basepair signature:
cWW-R-R-tHS-cWW

0.00 -101.58 7 4

122

Motif group IL_61084.1

Basepair signature:
cWW-L-R-R-L-L-L-cWW

0.00 -107.99 8 5

123

Motif group IL_39507.1

Basepair signature:
cWW-L-R-L-L-L-cWW

0.00 -120.61 8 5

124

Motif group IL_08296.2

Basepair signature:
cWW-tSH-R-R-cWW

0.00 -122.31 6 4

UAA/GAN related, with intercalation

125

Motif group IL_46401.1

Basepair signature:
cWW-L-L-L-L-tHH-cWW

0.00 -122.55 9 6

126

Motif group IL_70480.1

Basepair signature:
cWW-L-R-L-tHW-L-L-cWW

0.00 -125.78 9 6

127

Motif group IL_62827.1

Basepair signature:
cWW-R-cWH-R-R-R-cWW

0.00 -126.99 8 6

cWH basepair with bulged bases

128

Motif group IL_74736.1

Basepair signature:
cWW-tSH-L-R-R-L-cWW

0.00 -129.60 8 6

129

Motif group IL_94351.1

Basepair signature:
cWW-tSH-L-R-L-tHS-cWW

0.00 -131.57 8 6

130

Motif group IL_80884.1

Basepair signature:
cWW-cWW-R-R-R-R-cWW

0.00 -133.77 8 6

131

Motif group IL_47002.1

Basepair signature:
cWW-tSH-L-L-tHH-cWW

0.00 -134.43 7 5

132

Motif group IL_24905.8

Basepair signature:
cWW-cSW-R-cWW

0.00 -135.24 6 4

133

Motif group IL_70627.1

Basepair signature:
cWW-R-R-tWH-L-R-cWW

0.00 -137.07 7 5

UAA/GAN related

134

Motif group IL_90720.1

Basepair signature:
cWW-L-L-tHS-R-cWW

0.00 -139.61 7 4

135

Motif group IL_72416.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -144.05 7 5

136

Motif group IL_96860.1

Basepair signature:
cWW-cWW-cWH-L-cWW-cWW

0.00 -144.40 7 4

137

Motif group IL_89587.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -144.61 7 5

138

Motif group IL_42092.1

Basepair signature:
cWW-tSH-L-L-L-cWW

0.00 -144.99 8 4

Isolated basepair with bulged bases

139

Motif group IL_88269.2

Basepair signature:
cWW-tSH-tHW-L-cSH-R-cWW

0.00 -149.38 7 5

6x5 Sarcin-Ricin; G-bulge

140

Motif group IL_69979.1

Basepair signature:
cWW-L-R-R-R-R-L-L-L-cWW

0.00 -149.60 9 6

141

Motif group IL_83162.2

Basepair signature:
cWW-tSH-L-R-L-tHH-cWW

0.00 -153.77 7 5

tHS double platform

142

Motif group IL_38634.3

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -154.79 6 4

cWH basepair and non-canonical AC

143

Motif group IL_64842.1

Basepair signature:
cWW-L-L-L-tWH-cSH-cWW

0.00 -156.18 8 6

144

Motif group IL_98711.1

Basepair signature:
cWW-tSH-tHW-tWW-cWW

0.00 -157.66 8 5

tSH-tHW-tWW

145

Motif group IL_90157.1

Basepair signature:
cWW-L-L-L-L-tHH-cWS-cWW

0.00 -158.89 9 7

146

Motif group IL_90600.1

Basepair signature:
cWW-R-R-tHS-cWW

0.00 -160.10 6 3

147

Motif group IL_53523.4

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -162.22 5 3

UAA/GAN

148

Motif group IL_17971.1

Basepair signature:
cWW-tWW-L-tWW-L-cWW

0.00 -162.68 10 8

149

Motif group IL_34907.1

Basepair signature:
cWW-R-tWH-L-tHS-cWW

0.00 -163.40 6 4

UAA/GAN

150

Motif group IL_98876.1

Basepair signature:
cWW-cWW-L-R-R-tHW-bif-cWW

0.00 -164.84 8 7

151

Motif group IL_80412.1

Basepair signature:
cWW-R-R-R-R-R-tWS-cWW

0.00 -165.91 9 7

152

Motif group IL_05523.1

Basepair signature:
cWW-L-R-cWW-cSW-cSH-cWW

0.00 -167.01 8 5

153

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-L-L-L-bif-cWW

0.00 -167.08 8 7

Reverse turn

154

Motif group IL_74719.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -167.91 7 4

Double sheared

155

Motif group IL_14397.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -169.52 8 6

156

Motif group IL_86040.1

Basepair signature:
cWW-L-R-cSW-cSH-cWW

0.00 -170.96 6 3

157

Motif group IL_89193.1

Basepair signature:
cWW-L-R-R-cSH-tWH-tHS-cWW

0.00 -171.42 8 6

5x5 Sarcin-Ricin with intercalated A; G-bulge

158

Motif group IL_95811.1

Basepair signature:
cWW-L-L-L-cWW-L-bif-cWW

0.00 -173.63 8 6

Vitamin B12 Aptamer

159

Motif group IL_57188.2

Basepair signature:
cWW-tWW-cSH-L-tWW-cSH-cWW

0.00 -177.15 8 6

Kink-turn related

160

Motif group IL_74184.1

Basepair signature:
cWW-L-L-L-L-L-tHS-cWW

0.00 -177.79 9 7

161

Motif group IL_19569.2

Basepair signature:
cWW-L-L-L-L-cWW

0.00 -178.62 7 5

162

Motif group IL_29978.3

Basepair signature:
cWW-L-L-L-tHS-cWW

0.00 -180.20 7 4

163

Motif group IL_29821.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -180.85 8 6

UAA/GAN with extra stack

164

Motif group IL_77870.1

Basepair signature:
cWW-bif-L-L-L-tHS-cWW-cWW

0.00 -181.56 9 7

165

Motif group IL_96878.1

Basepair signature:
cWW-tSH-L-R-R-L-L-L-cWW

0.00 -182.68 9 7

166

Motif group IL_66497.1

Basepair signature:
cWW-tWH-L-R-tHS-bif-cWW

0.00 -183.53 9 8

167

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-L-L-L-L-cWW

0.00 -183.71 9 7

Reverse kink-turn related

168

Motif group IL_95688.1

Basepair signature:
cWW-L-cSS-cSS-L-R-cWW

0.00 -184.22 8 7

169

Motif group IL_08939.1

Basepair signature:
cWW-L-L-L-L-cWW

0.00 -184.96 7 5

170

Motif group IL_70801.1

Basepair signature:
cWW-L-R-R-tWW-cWW-cWW-cWW

0.00 -185.90 9 7

171

Motif group IL_52451.9

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -187.58 6 4

172

Motif group IL_93094.1

Basepair signature:
cWW-tSH-tHH-R-R-R-cWW

0.00 -189.08 9 6

Reverse kink-turn

173

Motif group IL_95993.1

Basepair signature:
cWW-R-tSS-tWW-tWW-cWW

0.00 -189.42 10 8

Kink-turn related

174

Motif group IL_11882.1

Basepair signature:
cWW-L-R-R-tHW-tHW-L-R-cWW

0.00 -190.46 9 8

175

Motif group IL_17470.4

Basepair signature:
cWW-R-tHW-tHW-tWW-cWW

0.00 -190.56 9 7

tHW-tHW cross-strand stack

176

Motif group IL_64879.1

Basepair signature:
cWW-tSH-tSH-tHS-tHS-cWW

0.00 -191.70 7 6

Triple sheared related

177

Motif group IL_87677.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -192.17 9 8

tWH-tWH-tHW-tHW

178

Motif group IL_79734.1

Basepair signature:
cWW-R-R-R-R-cWW

0.00 -193.23 8 5

179

Motif group IL_01502.1

Basepair signature:
cWW-L-R-R-L-L-L-L-cWW-cWW

0.00 -197.79 9 8

180

Motif group IL_04736.1

Basepair signature:
cWW-tSW-L-R-R-L-tWS-cWW

0.00 -198.64 10 8

181

Motif group IL_76308.3

Basepair signature:
cWW-tSH-tWH-tHW-tHS-cWW-cWW

0.00 -198.66 7 6

tSH-tWH-tHS-cWW

182

Motif group IL_65876.1

Basepair signature:
cWW-tSH-L-R-R-R-cWW

0.00 -198.68 10 7

Kink-turn

183

Motif group IL_39443.1

Basepair signature:
cWW-L-L-tWH-L-R-R-L-cWW

0.00 -200.35 9 7

184

Motif group IL_56501.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -200.37 8 7

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

185

Motif group IL_53318.1

Basepair signature:
cWW-cWW-tWH-tSH-tHS-cWW

0.00 -202.89 8 6

186

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -204.64 7 5

tSH-tHH-tHS

187

Motif group IL_59423.1

Basepair signature:
cWW-L-R-R-tHS-cWW

0.00 -205.25 7 5

188

Motif group IL_97253.1

Basepair signature:
cWW-L-R-R-R-R-R-R-R-L-L-cWW

0.00 -207.70 10 8

189

Motif group IL_89197.1

Basepair signature:
cWW-tSH-R-tHH-tHS-cWW

0.00 -207.98 9 7

190

Motif group IL_27393.6

Basepair signature:
cWW-L-L-L-L-L-L-cWW

0.00 -210.10 8 6

191

Motif group IL_55953.2

Basepair signature:
cWW-tSH-R-tHS-L-bif-cWW

0.00 -210.10 8 6

192

Motif group IL_58103.4

Basepair signature:
cWW-L-L-cWS-tSW-cWW

0.00 -212.02 6 4

Symmetric double minor groove platform

193

Motif group IL_68057.1

Basepair signature:
cWW-tSS-L-tSH-tHS-cWW-cWW

0.00 -212.32 8 7

Kink-turn

194

Motif group IL_32181.1

Basepair signature:
cWW-cWW-cWW-L-cSW-L-R-R-R-cWW

0.00 -214.05 12 11

195

Motif group IL_22436.1

Basepair signature:
cWW-L-cSS-tWH-tHW-cWW-cWW

0.00 -215.61 9 8

Kink-turn related

196

Motif group IL_36582.1

Basepair signature:
cWW-L-R-L-tHH-L-tWH-tHS-cWW

0.00 -217.10 10 8

8x6 Sarcin-Ricin with inserted A; G-bulge

197

Motif group IL_16109.3

Basepair signature:
cWW-R-cSH-tWH-tHS-cWW

0.00 -217.15 6 5

5x5 Sarcin-Ricin with intercalated A; G-bulge

198

Motif group IL_96042.3

Basepair signature:
cWW-cWW-cSH-R-cWW

0.00 -222.07 4 3

Major groove minor groove platform with extra cWW

199

Motif group IL_74051.1

Basepair signature:
cWW-tSS-L-tSH-tHS-L-cWW

0.00 -222.18 9 7

Kink-turn

200

Motif group IL_46112.1

Basepair signature:
cWW-L-L-L-L-L-cWW

0.00 -222.35 9 7

201

Motif group IL_54896.1

Basepair signature:
cWW-L-L-L-L-L-L-tSS-cWW

0.00 -223.48 11 8

202

Motif group IL_03420.1

Basepair signature:
cWW-R-cSH-tWH-tSH-tHS-cWW

0.00 -224.38 10 8

tSH-tHS-tHW

203

Motif group IL_69457.1

Basepair signature:
cWW-L-L-L-L-L-tHH-tHS-cWW

0.00 -225.34 10 7

204

Motif group IL_85630.1

Basepair signature:
cWW-cWW-L-R-R-R-R-R-L-tHS-cWW

0.00 -228.05 10 9

205

Motif group IL_52729.1

Basepair signature:
cWW-cWW-cWW-cWW-cWH-cWW

0.00 -229.08 9 7

206

Motif group IL_35110.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -229.31 8 7

7x6 Sarcin-Ricin; G-bulge

207

Motif group IL_81389.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -230.17 6 4

UAA/GAN related

208

Motif group IL_66414.4

Basepair signature:
cWW-cWW-tSH-tHS-tHS-L-R-cWW

0.00 -230.57 9 8

Triple sheared with non-canonical cWW

209

Motif group IL_65320.1

Basepair signature:
cWW-L-R-R-R-L-tHW-L-R-R-L-cWW

0.00 -230.73 11 9

210

Motif group IL_96942.1

Basepair signature:
cWW-L-R-R-R-tHW-tHW-bif-cWW

0.00 -231.20 12 10

211

Motif group IL_19954.1

Basepair signature:
cWW-tSH-tSH-tHS-cWW-cWW

0.00 -231.59 7 6

212

Motif group IL_93830.2

Basepair signature:
cWW-cWW-bif-R-cSH-tWH-tHS-cWW

0.00 -234.84 9 8

7x7 Sarcin-Ricin with intercalated A; G-bulge

213

Motif group IL_35058.1

Basepair signature:
cWW-tSW-L-cWS-tSW-R-R-cWW

0.00 -237.27 8 6

Symmetric double minor groove platform

214

Motif group IL_54670.1

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -237.38 9 8

tSH-tSH-tHH-tHS

215

Motif group IL_33557.1

Basepair signature:
cWW-cWW-tHH-L-R-R-R-L-L-L-cWW

0.00 -240.04 11 10

Kink-turn related

216

Motif group IL_24606.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-L-cWW

0.00 -241.02 10 8

8x6 Sarcin-Ricin with inserted Y; G-bulge

217

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -241.59 10 8

8x6 Sarcin-Ricin with bulged A; G-bulge

218

Motif group IL_49767.3

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -242.75 8 6

UAA/GAN with extra cWW

219

Motif group IL_96596.1

Basepair signature:
cWW-tSH-tHW-L-R-cWW-cWW

0.00 -242.98 10 8

220

Motif group IL_53529.1

Basepair signature:
cWW-L-cWH-R-R-cWW

0.00 -244.34 6 3

221

Motif group IL_55662.1

Basepair signature:
cWW-L-L-L-L-L-L-L-L-L-cWW

0.00 -244.59 11 8

222

Motif group IL_94518.4

Basepair signature:
cWW-bif-cWW-cWW-cWW-cWW

0.00 -245.36 7 6

223

Motif group IL_84315.1

Basepair signature:
cWW-tHS-cWS-R-tSW-R-R-cWW

0.00 -246.76 8 5

224

Motif group IL_74353.1

Basepair signature:
cWW-tSH-tHS-tHS-cWW-cWW

0.00 -247.43 9 7

Triple sheared with non-canonical cWW

225

Motif group IL_45034.1

Basepair signature:
cWW-L-L-L-L-L-L-cWW

0.00 -248.15 9 6

226

Motif group IL_29509.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -248.38 10 9

8x7 Sarcin-Ricin; G-bulge

227

Motif group IL_09129.1

Basepair signature:
cWW-tWH-tWH-L-R-L-tWW-cWW

0.00 -251.49 10 9

228

Motif group IL_76900.1

Basepair signature:
cWW-tSH-tSH-tHS-tSS-L-R-cWW

0.00 -252.85 10 8

Kink-turn

229

Motif group IL_51877.1

Basepair signature:
cWW-L-L-tWW-L-L-L-cWS-cWW

0.00 -254.32 10 8

230

Motif group IL_18894.1

Basepair signature:
cWW-tSH-tSH-tHS-tHS-cWW

0.00 -255.29 8 6

Quadruple sheared

231

Motif group IL_92440.4

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -255.48 10 9

tWH-tWH-tHW-tHW

232

Motif group IL_18369.2

Basepair signature:
cWW-cSH-tHS-cWW

0.00 -256.25 6 3

233

Motif group IL_15978.1

Basepair signature:
cWW-R-cSW-R-R-tHS-cWW

0.00 -258.14 10 8

234

Motif group IL_16456.1

Basepair signature:
cWW-tSH-tSH-tHS-tSS-tSS-R-cWW

0.00 -258.46 9 7

Kink-turn

235

Motif group IL_19023.1

Basepair signature:
cWW-cHW-L-L-L-L-L-L-L-L-cWW

0.00 -265.68 11 9

236

Motif group IL_04346.4

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -266.86 9 8

8x7 Sarcin-Ricin; G-bulge

237

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-L-tSH-tHS-tHS-cWW

0.00 -268.42 10 9

Kink-turn

238

Motif group IL_12750.1

Basepair signature:
cWW-L-R-cWW-L-R-R-R-R-L-L-cWW

0.00 -269.45 12 10

239

Motif group IL_36973.4

Basepair signature:
cWW-tSH-L-R-R-R-L-L-cWW-cWW

0.00 -271.61 10 9

240

Motif group IL_42032.1

Basepair signature:
cWW-tWH-R-R-R-cSH-cWW-cWW

0.00 -274.36 8 6

241

Motif group IL_29549.7

Basepair signature:
cWW-tSH-tSH-tHS-tSS-R-cWW

0.00 -276.38 8 7

Kink-turn

242

Motif group IL_68633.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-L-cWW-cWW

0.00 -277.25 12 10

9x7 Sarcin-Ricin with inserted C; G-bulge

243

Motif group IL_04667.1

Basepair signature:
cWW-tWH-cSW-L-R-R-L-tHS-cWW

0.00 -277.42 12 10

Kink-turn related

244

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -277.46 8 7

tSH-tHW-tWH-tHS

245

Motif group IL_10517.1

Basepair signature:
cWW-cWW-tSH-tWH-tHW-tHS-cWW-cWW

0.00 -279.66 11 9

246

Motif group IL_55896.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -281.03 7 5

Triple sheared

247

Motif group IL_59724.1

Basepair signature:
cWW-bif-tSH-tHW-cSH-tHH-bif-cWW

0.00 -288.20 11 9

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

248

Motif group IL_56867.1

Basepair signature:
cWW-L-R-R-L-L-cSS-L-cWW-cWW

0.00 -288.30 12 11

249

Motif group IL_66584.4

Basepair signature:
cWW-tSH-tSH-tHH-tHS-cWW

0.00 -289.12 9 7

tSH-tSH-tHH-tHS

250

Motif group IL_37722.1

Basepair signature:
cWW-cWW-tSH-tWH-tHS-tSS-R-cWW

0.00 -289.45 11 9

251

Motif group IL_86428.1

Basepair signature:
cWW-tHW-cWW-L-cSH-R-tHS-cWW-cWW

0.00 -294.25 8 6

252

Motif group IL_55666.1

Basepair signature:
cWW-R-cWH-L-L-L-cWW

0.00 -294.31 7 4

253

Motif group IL_93585.1

Basepair signature:
cWW-L-L-L-tWH-cSH-L-cWW-cWW

0.00 -294.49 9 7

Kink-turn related

254

Motif group IL_51265.1

Basepair signature:
cWW-tSS-L-tSH-tHS-cWW

0.00 -295.10 8 5

Kink-turn from U4

255

Motif group IL_68780.2

Basepair signature:
cWW-tSH-tSH-tHS-tSS-R-cWW

0.00 -296.19 10 8

Kink-turn

256

Motif group IL_89055.1

Basepair signature:
cWW-cWW-L-R-R-L-L-L-L-L-cWW-cWW

0.00 -300.54 13 12

257

Motif group IL_63750.1

Basepair signature:
cWW-tSS-cSS-tWW-L-tSH-R-R-cWW

0.00 -300.56 9 7

258

Motif group IL_69573.1

Basepair signature:
cWW-L-R-tWH-L-R-R-R-R-L-L-tWW-cWW

0.00 -303.39 13 11

259

Motif group IL_22863.1

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -303.90 12 11

tSH-tHW-tHH-tHS

260

Motif group IL_69091.1

Basepair signature:
cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW

0.00 -305.65 12 11

261

Motif group IL_41593.1

Basepair signature:
cWW-cHW-tHW-tHW-tHW-bif-cWW

0.00 -307.35 11 10

262

Motif group IL_53738.1

Basepair signature:
cWW-R-R-R-R-R-R-R-R-R-R-cWW

0.00 -308.35 13 10

Pseudoknot

263

Motif group IL_19048.1

Basepair signature:
cWW-bif-bif-L-L-cSW-cWW-cSH-R-cWW

0.00 -310.31 10 9

264

Motif group IL_58390.1

Basepair signature:
cWW-bif-tSW-L-L-L-cWW-cSW-R-cWW

0.00 -312.50 10 8

Minor groove platform related

265

Motif group IL_58819.1

Basepair signature:
cWW-L-R-R-tWH-L-tSS-tHW-R-tHH-cWW-cWW

0.00 -314.83 13 11

266

Motif group IL_45481.1

Basepair signature:
cWW-L-R-cHW-L-L-tSW-L-cWW

0.00 -316.07 13 11

267

Motif group IL_61812.1

Basepair signature:
cWW-cWW-tSH-tHW-cSH-tHH-tHS-cWW-cWW

0.00 -317.00 12 10

9x8 Sarcin-Ricin; G-bulge

268

Motif group IL_82426.3

Basepair signature:
cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW

0.00 -318.30 12 11

Part of G-quadruplex

269

Motif group IL_01560.1

Basepair signature:
cWW-L-L-L-cSH-L-L-cWW

0.00 -319.01 10 8

270

Motif group IL_60171.1

Basepair signature:
cWW-L-tWH-R-R-R-cWW

0.00 -320.26 7 5

Major groove platform; stack outside cWW

271

Motif group IL_90538.2

Basepair signature:
cWW-tSS-L-tSH-tSS-tHS-L-R-L-cWW

0.00 -320.32 10 8

Kink-turn

272

Motif group IL_94501.1

Basepair signature:
cWW-cWW-cWW-tHW-cWH-cSH-cWH-cSH-tHS-cWW

0.00 -325.48 12 11

273

Motif group IL_74271.1

Basepair signature:
cWW-L-L-L-tWH-L-L-L-cWW

0.00 -329.77 10 9

274

Motif group IL_39521.4

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -330.01 6 4

tSH-tWH-tHS

275

Motif group IL_56467.5

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -330.70 5 4

Triple sheared

276

Motif group IL_34470.1

Basepair signature:
cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -332.53 12 11

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

277

Motif group IL_00559.1

Basepair signature:
cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-cWW-cWW

0.00 -333.94 17 15

278

Motif group IL_90922.1

Basepair signature:
cWW-tSH-tWH-tHS-tSS-tSS-R-cWW

0.00 -333.96 9 7

Kink-turn

279

Motif group IL_39287.1

Basepair signature:
cWW-tSH-tHS-tSS-L-R-R-R-R-R-cWW

0.00 -338.23 13 11

Kink-turn related

280

Motif group IL_20463.1

Basepair signature:
cWW-L-R-R-R-cWH-R-tHH-cSH-tWH-tHS-cWW

0.00 -346.19 14 12

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

281

Motif group IL_45257.1

Basepair signature:
cWW-tSH-cWH-tWH-tSS-tHW-tHH-cWW

0.00 -348.75 11 10

282

Motif group IL_85931.1

Basepair signature:
cWW-cSW-tSH-tHH-tSS-tSS-R-R-cWW

0.00 -349.10 10 8

Kink-turn

283

Motif group IL_22821.1

Basepair signature:
cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW

0.00 -352.23 15 14

Pseudoknot

284

Motif group IL_34780.1

Basepair signature:
cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW

0.00 -354.16 13 12

Kink-turn

285

Motif group IL_16702.1

Basepair signature:
cWW-tSH-tWH-tHW-cWH-tSS-tHW-tHH-cWW

0.00 -356.23 11 10

286

Motif group IL_45944.2

Basepair signature:
cWW-L-L-tWH-L-L-L-cWW

0.00 -366.02 10 9

287

Motif group IL_34590.1

Basepair signature:
cWW-L-R-R-R-R-L-L-tHH-cSH-tWH-tHS-cWW

0.00 -370.55 14 12

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

288

Motif group IL_58960.1

Basepair signature:
cWW-L-L-tWW-L-L-L-cWW

0.00 -377.19 9 8

289

Motif group IL_56455.2

Basepair signature:
cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW

0.00 -377.48 12 12

Bacterial 5S Loop E

290

Motif group IL_17069.2

Basepair signature:
cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW

0.00 -383.42 11 10

Kink-turn related

291

Motif group IL_26785.1

Basepair signature:
cWW-cWW-L-R-R-tSH-tHW-cSH-tHH-tHS-cWW

0.00 -383.81 13 12

10x8 Sarcin-Ricin; G-bulge

292

Motif group IL_41414.1

Basepair signature:
cWW-cWW-R-R-cSH-R-bif-tWH-R-R-R-R-cWS-cWW

0.00 -384.22 17 15

293

Motif group IL_18472.1

Basepair signature:
cWW-R-tSW-R-tSW-L-L-cWW

0.00 -387.16 8 6

294

Motif group IL_15861.5

Basepair signature:
cWW-L-L-L-cSH-L-cWW

0.00 -409.91 8 7

SSU/LSU pseudoknot

295

Motif group IL_38044.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW

0.00 -415.54 18 17

296

Motif group IL_21121.1

Basepair signature:
cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW

0.00 -416.96 9 7

297

Motif group IL_13394.1

Basepair signature:
cWW-L-R-R-R-R-tSS-R-R-R-R-R-R-R-R-L-L-L-cWW

0.00 -420.65 18 16

298

Motif group IL_51366.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW

0.00 -429.65 18 17

299

Motif group IL_89731.1

Basepair signature:
cWW-R-tWH-R-R-R-cWW

0.00 -436.07 8 7

300

Motif group IL_68506.1

Basepair signature:
cWW-cWW-tSH-R-tHW-tHW-tWH-L-R-cWW-cWW

0.00 -445.94 15 14

301

Motif group IL_31504.1

Basepair signature:
cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW

0.00 -446.05 16 14

302

Motif group IL_61300.1

Basepair signature:
cWW-cSS-L-tHW-tSS-L-L-L-L-L-L-cWW

0.00 -447.54 13 12

303

Motif group IL_72938.1

Basepair signature:
cWW-cWW-cSH-cSH-tHS-cWW

0.00 -455.52 5 3

8-nt loop receptor

304

Motif group IL_45289.1

Basepair signature:
cWW-bif-cSH-cSW-cWW-cWW

0.00 -464.65 6 4

305

Motif group IL_24106.1

Basepair signature:
cWW-tSH-tWH-tWH-R-R-R-R-R-R-R-cWW

0.00 -467.66 14 13

306

Motif group IL_22615.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-cSH-R-R-L-tHH-tHS-cWW

0.00 -469.72 20 18

307

Motif group IL_90991.4

Basepair signature:
cWW-cWW

0.00 -478.75 5 3

Multiple bulged bases

308

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-tWH-tWH-tSS-L-L-L-bif-cWW-tSS-cSS-R-R-cWW

0.00 -483.95 18 17

Kink-turn related

309

Motif group IL_20245.1

Basepair signature:
cWW-L-R-R-R-R-L-L-L-L-L-L-L-L-L-L-L-L-cWW-L-R-cWW

0.00 -485.11 20 19

310

Motif group IL_49655.1

Basepair signature:
cWW-tWW-L-R-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -487.20 21 20

311

Motif group IL_65055.1

Basepair signature:
cWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -491.94 21 20

312

Motif group IL_80355.1

Basepair signature:
cWW-tWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -501.80 21 20

313

Motif group IL_93270.1

Basepair signature:
cWW-L-L-cWS-cWW

0.00 -519.57 6 4

Minor groove platform

314

Motif group IL_94878.1

Basepair signature:
cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW

0.00 -558.80 23 22

315

Motif group IL_67834.1

Basepair signature:
cWW-R-R-R-R-R-R-tWW-R-R-R-R-R-R-R-R-R-R-R-R-cWW

0.00 -597.37 22 21

316

Motif group IL_17765.1

Basepair signature:
cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW

0.00 -601.48 12 10

317

Motif group IL_35904.1

Basepair signature:
cWW-tSH-tSS-tSS-R-R-R-R-cWW

0.00 -724.53 10 7

Kink-turn

318

Motif group IL_60992.4

Basepair signature:
cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW

0.00 -736.65 14 13

319

Motif group IL_75283.1

Basepair signature:
cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW

0.00 -741.55 14 12

320

Motif group IL_84409.1

Basepair signature:
cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW

0.00 -760.99 20 19

321

Motif group IL_63596.2

Basepair signature:
cWW-tWH-cSH-L-cWS-cWW

0.00 -8280.76 4 2

C-loop

322

Motif group IL_28060.3

Basepair signature:
cWW-tHH-L-cWS-R-cWW

0.00 -9840.49 5 3

Major groove minor groove platform with tHH

Coloring options: