RNA 3D Hub

JAR3D Query RF03064-CCF-3.48 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 1 Internal loop

Column numbers: 5-10, 135-144 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    U-GGAG*C-GUUGA-AG  122

    
    U-GGAG*C-GAUGA-AG   75

    
    U-GGAG*C-AAUGA-AG   54

    
    U-GGAG*C-GUAGA-AG   51

    
    U-GGAG*C-UAUGA-AG   42

    
    U-GGAG*C-GUUGA-AA   39

    
    U-GGAG*C-GAUGA-AA   37

    
    U-GGAG*C-GAUGA-AU   36

    
    U-GGAC*G-GUUGA-AG   35

    
    U-GGAG*C-AUUGA-AG   34

    
    U-GGAG*C-GUUGA-AU   27

    
    U-GGAU*G-GAUGA-AG   27

    
    C-GGAG*C-GAUGA-AC   25

    
    C-GGAG*C-GUAGA-AC   25

    
    U-GGAG*C-GAAGA-AG   21

    
    U-GGAG*U-UAUGA-AG   19

    
    U-GGAC*G-GAAGA-AG   16

    
    U-GGAC*G-GAUGA-AG   16

    
    U-GGAC*G-GGUGA-AG   16

    
    U-GGAG*C-UAUGA-AU   16

    
    U-GGAG*C-GAUGA-AC   14

    
    C-GGAG*C-GUUGA-AC   13

    
    U-GGAG*C-GACGA-AG   13

    
    U-GGAG*C-AUUGA-AA   12

    
    U-GGAG*C-AUUGA-AU   11

    
    U-GGAG*C-GGUGA-AG   11

    
    U-GGAG*C-GAGGA-AA   10

    
    U-GGAG*C-GCUGA-AG   10

    
    U-UGAG*C-GAUGA-UG   10

    
    C-GGAG*C-GAUGA-AG    9

    
    U-GGAG*C-AAUGA-AA    9

    
    U-GGAG*C-AUAGA-AG    9

    
    U-UGAG*C-AGUGA-UG    9

    
    C-GGAC*G-GUUGA-AC    8

    
    G-GGAG*C-GUUGA-AU    8

    
    U-GGAG*C-AUCGA-AG    8

    
    U-GGAG*C-GGCGA-AG    8

    
    U-GGAG*C-UGUGA-AG    8

    
    U-UGAG*C-GUUGA-UG    8

    
    C-GGAG*C-GUAGA-AA    7

    
    C-UGAG*C-GUAGA-AC    7

    
    U-GGAC*G-GUAGA-AG    7

    
    U-GGAG*C-AAUGA-AU    7

    
    U-GGAG*C-GAAGA-AA    7

    
    U-GGAG*C-GAUGA-CA    7

    
    U-GGAG*C-GGUGA-AU    7

    
    U-GAAG*C-GUUGA-AA    6

    
    U-GGAC*G-GAUGA-AA    6

    
    U-GGAG*C-AAGGA-AG    6

    
    U-GGAG*C-GUAGA-AC    6

    
    U-GGAG*C-UAAGA-AG    6

    
    U-GGAG*C-UAUGA-AA    6

    
    U-GGAG*C-UGAGA-AG    6

    
    U-GGAU*G-GAUGA-AA    6

    
    C-GGAG*C-GAAGA-AC    5

    
    U-AGAG*C-GUUGA-AG    5

    
    U-GGAC*G-GAAGA-AA    5

    
    U-GGAC*G-GUUGA-AA    5

    
    U-GGAG*C-AGAGA-AG    5

    
    U-GGAG*C-GGUGA-CA    5

    
    U-GGAU*G-GUUGA-AA    5

    
    U-UGAA*G-GAGGA-AA    5

    
    UUGGAG*C-AAUGA-AG    4

    
    C-GGAG*C-GAUGA-AA    4

    
    C-GGAG*U-GAUGA-AC    4

    
    G-GGAG*C-UGUGA-AU    4

    
    U-GAAG*C-GAUGA-AG    4

    
    U-GAAG*C-GUAGA-AG    4

    
    U-GAAU*G-GAUGA-AG    4

    
    U-GGAC*G-GGAGA-AG    4

    
    U-GGAG*C-AGCGA-AG    4

    
    U-GGAG*C-AGUGA-AG    4

    
    U-GGAG*C-GAGGA-AG    4

    
    U-GGAG*C-GAUAA-AG    4

    
    U-GGAG*C-UGUGA-AU    4

    
    U-GGAG*U-GAUGA-AC    4

    
    U-GGAG*U-GAUGA-AG    4

    
    U-GGAU*G-GUUGA-AG    4

    
    U-UAAG*C-GUUGA-AG    4

    
    U-UGAG*C-GGUGA-UG    4

    
    U-GGAG*CGUUUGA-AA    3

    
    C-GGAG*C-AUUGA-AC    3

    
    C-GGAG*C-GAAGA-AA    3

    
    U-GAAG*C-GUUGA-AG    3

    
    U-GGAA*U-GACGA-AA    3

    
    U-GGAC*G-GAUGA-AU    3

    
    U-GGAG*C-AUUGA-AC    3

    
    U-GGAG*C-CAUGA-AU    3

    
    U-GGAG*C-GCAGA-AG    3

    
    U-GGAG*C-GGCGA-AA    3

    
    U-GGAG*C-GUCGA-AA    3

    
    U-GGAG*C-GUUGA-AC    3

    
    U-GGAG*C-UACGA-AG    3

    
    U-GGAG*C-UGUGA-AA    3

    
    U-GGAG*C-UUUGA-AG    3

    
    U-GGAG*U-GAUGA-AA    3

    
    U-GGAG*U-GUUGA-AU    3

    
    U-GGAG*U-UAAGA-AG    3

    
    U-GGAU*G-AAUGA-AG    3

    
    U-GGAG*CUAAUGA-AG    2

    
    A-GGAG*C-AAUGA-AU    2

    
    A-GGAG*C-GAUGA-AU    2

    
    A-GGAG*C-GUUGA-AC    2

    
    C-AGAG*C-GAUGA-AG    2

    
    C-AGAG*C-GUUGA-AC    2

    
    C-GGAC*G-GAUGA-AA    2

    
    C-GGAC*G-GAUGA-AC    2

    
    C-GGAG*C-AAUGA-AA    2

    
    C-GGAG*C-GGUGA-AC    2

    
    C-GGAG*C-GGUGA-AG    2

    
    C-GGAG*C-GUUGA-AA    2

    
    C-GGAG*C-GUUGA-AG    2

    
    C-GGAG*U-AAUGA-AC    2

    
    U-GAAG*C-AUCGA-AG    2

    
    U-GAAG*C-GGCGA-AG    2

    
    U-GGAA*C-GUAGA-AA    2

    
    U-GGAC*G-GAUGA-AC    2

    
    U-GGAC*G-GGUGA-AA    2

    
    U-GGAC*G-GUCGA-AG    2

    
    U-GGAC*G-GUUGA-AU    2

    
    U-GGAG*C-AAAGA-AA    2

    
    U-GGAG*C-AAAGA-AG    2

    
    U-GGAG*C-AACGA-AG    2

    
    U-GGAG*C-AAUGA-AC    2

    
    U-GGAG*C-AGUGA-AA    2

    
    U-GGAG*C-AGUGA-AU    2

    
    U-GGAG*C-GAAGA-AU    2

    
    U-GGAG*C-GCUGA-AA    2

    
    U-GGAG*C-GGAGA-AG    2

    
    U-GGAG*C-GGUGA-AA    2

    
    U-GGAG*C-GGUGA-AC    2

    
    U-GGAG*C-GUAGA-AA    2

    
    U-GGAG*C-GUUAA-AU    2

    
    U-GGAG*C-UGAGA-AA    2

    
    U-GGAG*C-UGCGA-AG    2

    
    U-GGAG*C-UUUGA-AA    2

    
    U-GGAG*U-AUUGA-AG    2

    
    U-GGAG*U-GGUGA-AG    2

    
    U-GGAG*U-GUAGA-AG    2

    
    U-GGAG*U-GUUGA-AA    2

    
    U-GGAG*U-GUUGA-AG    2

    
    U-GGAU*A-GAUGA-AG    2

    
    U-GGAU*G-AAGGA-AG    2

    
    U-UGAG*G-GAGGA-AA    2

    
    UGGGAG*C-GAAGAAAG    1

    
    AGGGAG*U-AAUGA-AC    1

    
    CUGGAG*C-GUAGA-AC    1

    
    GAAGAG*C-UAUGA-AU    1

    
    GAAGAG*U-GAUGA-AC    1

    
    U-GAAG*CGAAUGA-UA    1

    
    U-GGAG*C-AAUGAAGU    1

    
    U-GGAG*C-AUUGAAAG    1

    
    U-GGAG*C-GCUGAAAG    1

    
    U-GGAG*CGAUUGA-AG    1

    
    U-GGAG*CGGACGA-AG    1

    
    U-GGAG*CGUAUGA-AU    1

    
    U-GGAG*CGUUUGA-AG    1

    
    U-GGAG*CUAAAGA-AC    1

    
    UUGGAG*C-UAUGA-AG    1

    
    A-GGAG*C-GAUGA-GU    1

    
    A-GGAG*C-UAAGA-AU    1

    
    A-GGAG*C-UAUGA-AU    1

    
    A-UGAG*C-GAUGA-AU    1

    
    C-AAAG*U-GUAGA-AC    1

    
    C-GAAG*C-GAUGA-AC    1

    
    C-GAAG*C-GUAGA-AC    1

    
    C-GGAC*G-GAAGA-AC    1

    
    C-GGAC*G-GUUGA-AA    1

    
    C-GGAC*U-GCUGA-AG    1

    
    C-GGAG*C-AAAGA-AA    1

    
    C-GGAG*C-AAUGA-AG    1

    
    C-GGAG*C-AGUGA-AA    1

    
    C-GGAG*C-GAUGA-AU    1

    
    C-GGAG*C-GAUGA-GC    1

    
    C-GGAG*C-GUUAA-AC    1

    
    C-GGAG*C-UAUGA-AA    1

    
    C-GGAG*C-UUAGA-AC    1

    
    C-GGAG*U-GAUGA-AU    1

    
    C-UGAA*C-GUAGA-AC    1

    
    C-UGAG*C-GUUGA-AC    1

    
    C-UGAG*C-GUUGA-UG    1

    
    G-GAAG*C-AAUGA-AU    1

    
    G-GAAG*U-UAUGA-AU    1

    
    G-GGAG*C-AAUGA-AU    1

    
    G-GGAG*C-ACUGA-AU    1

    
    G-GGAG*C-AUUGA-AU    1

    
    G-GGAG*C-GAUGA-AA    1

    
    G-GGAG*C-GAUGA-AC    1

    
    G-GGAG*C-GAUGA-AU    1

    
    G-GGAG*C-GAUGA-CA    1

    
    G-GGAG*C-GCUGA-AC    1

    
    G-GGAG*U-GUUGA-AU    1

    
    U-AGAA*C-AUUGA-AU    1

    
    U-AGAC*G-GAGGA-AA    1

    
    U-AGAC*G-GUUGA-UG    1

    
    U-AGAG*C-AUUGA-AU    1

    
    U-AGAG*C-GACGA-AG    1

    
    U-AGAG*C-GAUGA-AG    1

    
    U-AGAG*C-GUUGA-AA    1

    
    U-AGAG*C-GUUGA-AU    1

    
    U-AGAG*C-UAUGA-GG    1

    
    U-AGAG*U-AUUGA-AU    1

    
    U-AGAG*U-GAUGA-UA    1

    
    U-CGAG*C-GAUGA-AG    1

    
    U-GAAC*G-GUGGA-AG    1

    
    U-GAAC*G-GUUGA-AG    1

    
    U-GAAG*C-AACGA-AG    1

    
    U-GAAG*C-AAUAA-AA    1

    
    U-GAAG*C-AAUGA-AA    1

    
    U-GAAG*C-AUUGA-AG    1

    
    U-GAAG*C-GAAGA-AG    1

    
    U-GAAG*C-GACGA-AG    1

    
    U-GAAG*C-GAUGA-AA    1

    
    U-GAAG*C-GAUGA-UA    1

    
    U-GAAG*C-GGUGA-AC    1

    
    U-GAAG*U-GUUGA-AG    1

    
    U-GAAU*G-GAUGA-AA    1

    
    U-GGAA*U-UAUUA-AG    1

    
    U-GGAA*U-UGUGA-AG    1

    
    U-GGAC*G-AAUGA-AA    1

    
    U-GGAC*G-AUUGA-AG    1

    
    U-GGAC*G-GAAGA-AC    1

    
    U-GGAC*G-GACGA-AG    1

    
    U-GGAC*G-GAGGA-AA    1

    
    U-GGAC*G-GAUAA-AG    1

    
    U-GGAC*G-GGCGA-AG    1

    
    U-GGAC*G-GGGGA-AG    1

    
    U-GGAC*G-GUGGA-AC    1

    
    U-GGAC*G-GUUGA-AC    1

    
    U-GGAC*G-UAUGA-AG    1

    
    U-GGAG*A-GACGA-AG    1

    
    U-GGAG*A-GUUGA-AG    1

    
    U-GGAG*C-AAUAA-AA    1

    
    U-GGAG*C-AAUGA-GA    1

    
    U-GGAG*C-AAUGA-GU    1

    
    U-GGAG*C-ACUGA-AA    1

    
    U-GGAG*C-ACUGA-AG    1

    
    U-GGAG*C-AGUAA-AG    1

    
    U-GGAG*C-AUAGA-GG    1

    
    U-GGAG*C-GAAAA-AA    1

    
    U-GGAG*C-GAAGA-CG    1

    
    U-GGAG*C-GACGA-AA    1

    
    U-GGAG*C-GACGA-AC    1

    
    U-GGAG*C-GACGA-AU    1

    
    U-GGAG*C-GAUGG-AG    1

    
    U-GGAG*C-GAUUA-AA    1

    
    U-GGAG*C-GCAGA-AA    1

    
    U-GGAG*C-GCCGA-AG    1

    
    U-GGAG*C-GCUGA-AU    1

    
    U-GGAG*C-GGGGA-AA    1

    
    U-GGAG*C-GGGGA-AG    1

    
    U-GGAG*C-GUAGA-GU    1

    
    U-GGAG*C-GUCGA-AG    1

    
    U-GGAG*C-GUGGA-AC    1

    
    U-GGAG*C-GUGGA-AG    1

    
    U-GGAG*C-GUUGA-GA    1

    
    U-GGAG*C-GUUGA-GG    1

    
    U-GGAG*C-GUUUA-AA    1

    
    U-GGAG*C-UAUGA-AC    1

    
    U-GGAG*C-UAUGA-GA    1

    
    U-GGAG*C-UAUGA-GG    1

    
    U-GGAG*C-UGAGA-GG    1

    
    U-GGAG*C-UGUGA-AC    1

    
    U-GGAG*U-AAUGA-AC    1

    
    U-GGAG*U-AUUGA-AA    1

    
    U-GGAG*U-GAUGA-AU    1

    
    U-GGAG*U-GGUGA-AU    1

    
    U-GGAU*C-GGUGA-AA    1

    
    U-GGAU*G-GAAGA-AG    1

    
    U-GGAU*G-GAGGA-AG    1

    
    U-GGAU*G-GGUGA-AG    1

    
    U-GGAU*G-GUUUA-AG    1

    
    U-GGCG*C-AUUGA-AG    1

    
    U-GGCG*C-GAUGA-AU    1

    
    U-GUAG*C-AAUGA-AG    1

    
    U-UAAG*C-AGUGA-UG    1

    
    U-UAAG*U-UAUGA-AG    1

    
    U-UGAG*C-AAUGA-UG    1

    
    U-UGAG*C-AUUGA-UG    1

    
    U-UGAG*C-GUUGA-AG    1

    
    U-UGAG*C-UAUGA-AG    1

    
    U-UGAG*U-GAUGA-AA    1

    
    U-UGAG*U-GAUGA-UG    1

    
    U-GGAG*C-AAUG--AA    1

    
    U-GGAG*C-GAA---AA    1

    
    A----G*C-GUUGA-AU    1

    
    Omitted sequenced and counts

    
    U-GGAG*C-NAUGA-AG    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_29549.7

Basepair signature:
cWW-tSH-tSH-tHS-tSS-R-cWW

99.30 73.05 1 1

Kink-turn

2

Motif group IL_65876.1

Basepair signature:
cWW-tSH-L-R-R-R-cWW

96.62 58.58 3 1

Kink-turn

3

Motif group IL_16456.1

Basepair signature:
cWW-tSH-tSH-tHS-tSS-tSS-R-cWW

95.42 45.81 3 2

Kink-turn

4

Motif group IL_68780.2

Basepair signature:
cWW-tSH-tSH-tHS-tSS-R-cWW

94.57 42.97 4 2

Kink-turn

5

Motif group IL_68057.1

Basepair signature:
cWW-tSS-L-tSH-tHS-cWW-cWW

79.07 14.50 4 3

Kink-turn

6

Motif group IL_74051.1

Basepair signature:
cWW-tSS-L-tSH-tHS-L-cWW

14.16 -20.23 4 2

Kink-turn

7

Motif group IL_90922.1

Basepair signature:
cWW-tSH-tWH-tHS-tSS-tSS-R-cWW

12.61 -23.22 5 4

Kink-turn

8

Motif group IL_90538.2

Basepair signature:
cWW-tSS-L-tSH-tSS-tHS-L-R-L-cWW

11.21 -20.88 5 4

Kink-turn

9

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-L-tSH-tHS-tHS-cWW

10.57 -29.34 5 4

Kink-turn

10

Motif group IL_85931.1

Basepair signature:
cWW-cSW-tSH-tHH-tSS-tSS-R-R-cWW

5.29 -33.76 7 5

Kink-turn

11

Motif group IL_77870.1

Basepair signature:
cWW-bif-L-L-L-tHS-cWW-cWW

4.02 -23.17 6 4

12

Motif group IL_03420.1

Basepair signature:
cWW-R-cSH-tWH-tSH-tHS-cWW

1.62 -28.20 6 4

tSH-tHS-tHW

13

Motif group IL_89197.1

Basepair signature:
cWW-tSH-R-tHH-tHS-cWW

0.92 -54.76 7 4

14

Motif group IL_90157.1

Basepair signature:
cWW-L-L-L-L-tHH-cWS-cWW

0.63 -38.71 6 5

15

Motif group IL_95993.1

Basepair signature:
cWW-R-tSS-tWW-tWW-cWW

0.63 -43.22 7 5

Kink-turn related

16

Motif group IL_36582.1

Basepair signature:
cWW-L-R-L-tHH-L-tWH-tHS-cWW

0.63 -57.94 7 5

8x6 Sarcin-Ricin with inserted A; G-bulge

17

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-L-L-L-bif-cWW

0.42 -53.01 9 5

Reverse turn

18

Motif group IL_69457.1

Basepair signature:
cWW-L-L-L-L-L-tHH-tHS-cWW

0.21 -54.31 5 4

19

Motif group IL_96596.1

Basepair signature:
cWW-tSH-tHW-L-R-cWW-cWW

0.21 -64.96 7 5

20

Motif group IL_94351.1

Basepair signature:
cWW-tSH-L-R-L-tHS-cWW

0.14 -49.96 4 4

21

Motif group IL_53318.1

Basepair signature:
cWW-cWW-tWH-tSH-tHS-cWW

0.14 -67.11 7 5

22

Motif group IL_95688.1

Basepair signature:
cWW-L-cSS-cSS-L-R-cWW

0.14 -78.71 9 6

23

Motif group IL_83162.2

Basepair signature:
cWW-tSH-L-R-L-tHH-cWW

0.07 -47.37 4 2

tHS double platform

24

Motif group IL_15978.1

Basepair signature:
cWW-R-cSW-R-R-tHS-cWW

0.07 -58.14 7 4

25

Motif group IL_47002.1

Basepair signature:
cWW-tSH-L-L-tHH-cWW

0.07 -61.28 6 3

26

Motif group IL_54670.1

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.07 -73.14 7 4

tSH-tSH-tHH-tHS

27

Motif group IL_51265.1

Basepair signature:
cWW-tSS-L-tSH-tHS-cWW

0.07 -102.23 4 3

Kink-turn from U4

28

Motif group IL_29821.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.07 -106.31 7 5

UAA/GAN with extra stack

29

Motif group IL_47108.1

Basepair signature:
cWW-tHH-L-R-R-R-cWW

0.07 -114.30 7 5

30

Motif group IL_74736.1

Basepair signature:
cWW-tSH-L-R-R-L-cWW

0.07 -124.36 9 7

31

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.07 -125.84 7 5

tSH-tHH-tHS

32

Motif group IL_55896.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.07 -167.54 4 3

Triple sheared

33

Motif group IL_88269.2

Basepair signature:
cWW-tSH-tHW-L-cSH-R-cWW

0.00 -40.24 6 4

6x5 Sarcin-Ricin; G-bulge

34

Motif group IL_17470.4

Basepair signature:
cWW-R-tHW-tHW-tWW-cWW

0.00 -64.02 7 5

tHW-tHW cross-strand stack

35

Motif group IL_17971.1

Basepair signature:
cWW-tWW-L-tWW-L-cWW

0.00 -67.18 8 7

36

Motif group IL_37722.1

Basepair signature:
cWW-cWW-tSH-tWH-tHS-tSS-R-cWW

0.00 -68.84 7 5

37

Motif group IL_97253.1

Basepair signature:
cWW-L-R-R-R-R-R-R-R-L-L-cWW

0.00 -69.38 9 7

38

Motif group IL_85630.1

Basepair signature:
cWW-cWW-L-R-R-R-R-R-L-tHS-cWW

0.00 -75.24 10 7

39

Motif group IL_70801.1

Basepair signature:
cWW-L-R-R-tWW-cWW-cWW-cWW

0.00 -76.70 8 6

40

Motif group IL_34907.1

Basepair signature:
cWW-R-tWH-L-tHS-cWW

0.00 -78.00 5 5

UAA/GAN

41

Motif group IL_89587.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -78.01 7 5

42

Motif group IL_98353.1

Basepair signature:
cWW-cWS-L-L-cWW

0.00 -79.12 7 4

43

Motif group IL_96942.1

Basepair signature:
cWW-L-R-R-R-tHW-tHW-bif-cWW

0.00 -79.51 9 7

44

Motif group IL_42032.1

Basepair signature:
cWW-tWH-R-R-R-cSH-cWW-cWW

0.00 -83.56 7 4

45

Motif group IL_79393.7

Basepair signature:
cWW-L-R-R-L-L-L-L-cWW

0.00 -87.14 8 5

46

Motif group IL_56867.1

Basepair signature:
cWW-L-R-R-L-L-cSS-L-cWW-cWW

0.00 -88.47 9 7

47

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -91.45 7 4

8x6 Sarcin-Ricin with bulged A; G-bulge

48

Motif group IL_70480.1

Basepair signature:
cWW-L-R-L-tHW-L-L-cWW

0.00 -92.33 9 5

49

Motif group IL_57188.2

Basepair signature:
cWW-tWW-cSH-L-tWW-cSH-cWW

0.00 -92.35 8 6

Kink-turn related

50

Motif group IL_35904.1

Basepair signature:
cWW-tSH-tSS-tSS-R-R-R-R-cWW

0.00 -94.68 5 4

Kink-turn

51

Motif group IL_93094.1

Basepair signature:
cWW-tSH-tHH-R-R-R-cWW

0.00 -94.99 5 4

Reverse kink-turn

52

Motif group IL_98711.1

Basepair signature:
cWW-tSH-tHW-tWW-cWW

0.00 -97.31 6 5

tSH-tHW-tWW

53

Motif group IL_01502.1

Basepair signature:
cWW-L-R-R-L-L-L-L-cWW-cWW

0.00 -99.69 10 9

54

Motif group IL_65320.1

Basepair signature:
cWW-L-R-R-R-L-tHW-L-R-R-L-cWW

0.00 -100.17 11 7

55

Motif group IL_80412.1

Basepair signature:
cWW-R-R-R-R-R-tWS-cWW

0.00 -101.69 9 7

56

Motif group IL_22436.1

Basepair signature:
cWW-L-cSS-tWH-tHW-cWW-cWW

0.00 -102.62 9 7

Kink-turn related

57

Motif group IL_32181.1

Basepair signature:
cWW-cWW-cWW-L-cSW-L-R-R-R-cWW

0.00 -102.80 12 8

58

Motif group IL_70627.1

Basepair signature:
cWW-R-R-tWH-L-R-cWW

0.00 -107.40 8 5

UAA/GAN related

59

Motif group IL_11882.1

Basepair signature:
cWW-L-R-R-tHW-tHW-L-R-cWW

0.00 -107.86 9 6

60

Motif group IL_24606.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-L-cWW

0.00 -109.16 8 6

8x6 Sarcin-Ricin with inserted Y; G-bulge

61

Motif group IL_17069.2

Basepair signature:
cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW

0.00 -109.16 8 6

Kink-turn related

62

Motif group IL_58819.1

Basepair signature:
cWW-L-R-R-tWH-L-tSS-tHW-R-tHH-cWW-cWW

0.00 -109.76 9 7

63

Motif group IL_95811.1

Basepair signature:
cWW-L-L-L-cWW-L-bif-cWW

0.00 -110.02 7 6

Vitamin B12 Aptamer

64

Motif group IL_96878.1

Basepair signature:
cWW-tSH-L-R-R-L-L-L-cWW

0.00 -110.11 9 7

65

Motif group IL_36973.4

Basepair signature:
cWW-tSH-L-R-R-R-L-L-cWW-cWW

0.00 -113.02 8 6

66

Motif group IL_49767.3

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -113.49 5 4

UAA/GAN with extra cWW

67

Motif group IL_62827.1

Basepair signature:
cWW-R-cWH-R-R-R-cWW

0.00 -114.98 8 6

cWH basepair with bulged bases

68

Motif group IL_89193.1

Basepair signature:
cWW-L-R-R-cSH-tWH-tHS-cWW

0.00 -117.47 7 5

5x5 Sarcin-Ricin with intercalated A; G-bulge

69

Motif group IL_64879.1

Basepair signature:
cWW-tSH-tSH-tHS-tHS-cWW

0.00 -117.47 8 5

Triple sheared related

70

Motif group IL_98876.1

Basepair signature:
cWW-cWW-L-R-R-tHW-bif-cWW

0.00 -117.49 10 8

71

Motif group IL_39443.1

Basepair signature:
cWW-L-L-tWH-L-R-R-L-cWW

0.00 -117.57 9 7

72

Motif group IL_63750.1

Basepair signature:
cWW-tSS-cSS-tWW-L-tSH-R-R-cWW

0.00 -118.01 8 6

73

Motif group IL_04736.1

Basepair signature:
cWW-tSW-L-R-R-L-tWS-cWW

0.00 -118.26 8 7

74

Motif group IL_14397.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -120.67 7 6

75

Motif group IL_61275.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -121.45 8 7

76

Motif group IL_64842.1

Basepair signature:
cWW-L-L-L-tWH-cSH-cWW

0.00 -123.22 7 6

77

Motif group IL_80884.1

Basepair signature:
cWW-cWW-R-R-R-R-cWW

0.00 -125.72 8 7

78

Motif group IL_96860.1

Basepair signature:
cWW-cWW-cWH-L-cWW-cWW

0.00 -126.27 8 5

79

Motif group IL_56501.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -126.71 9 5

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

80

Motif group IL_82988.1

Basepair signature:
cWW-cWW-L-L-tHS-cWW

0.00 -127.28 6 4

81

Motif group IL_29509.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -129.39 7 6

8x7 Sarcin-Ricin; G-bulge

82

Motif group IL_76900.1

Basepair signature:
cWW-tSH-tSH-tHS-tSS-L-R-cWW

0.00 -130.51 7 5

Kink-turn

83

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -131.69 7 7

Kink-turn related

84

Motif group IL_69979.1

Basepair signature:
cWW-L-R-R-R-R-L-L-L-cWW

0.00 -133.43 9 7

85

Motif group IL_54896.1

Basepair signature:
cWW-L-L-L-L-L-L-tSS-cWW

0.00 -135.26 8 6

86

Motif group IL_66497.1

Basepair signature:
cWW-tWH-L-R-tHS-bif-cWW

0.00 -135.34 9 7

87

Motif group IL_58390.1

Basepair signature:
cWW-bif-tSW-L-L-L-cWW-cSW-R-cWW

0.00 -135.42 9 6

Minor groove platform related

88

Motif group IL_12750.1

Basepair signature:
cWW-L-R-cWW-L-R-R-R-R-L-L-cWW

0.00 -136.22 11 9

89

Motif group IL_89055.1

Basepair signature:
cWW-cWW-L-R-R-L-L-L-L-L-cWW-cWW

0.00 -137.74 11 9

90

Motif group IL_74184.1

Basepair signature:
cWW-L-L-L-L-L-tHS-cWW

0.00 -138.13 8 7

91

Motif group IL_35110.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -138.94 6 5

7x6 Sarcin-Ricin; G-bulge

92

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-L-L-L-L-cWW

0.00 -139.94 9 7

Reverse kink-turn related

93

Motif group IL_46401.1

Basepair signature:
cWW-L-L-L-L-tHH-cWW

0.00 -140.60 8 6

94

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-cWW-cWW

0.00 -142.21 7 6

95

Motif group IL_66584.4

Basepair signature:
cWW-tSH-tSH-tHH-tHS-cWW

0.00 -143.05 6 3

tSH-tSH-tHH-tHS

96

Motif group IL_72416.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -145.32 9 6

97

Motif group IL_21121.1

Basepair signature:
cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW

0.00 -146.55 9 7

98

Motif group IL_66414.4

Basepair signature:
cWW-cWW-tSH-tHS-tHS-L-R-cWW

0.00 -146.97 6 5

Triple sheared with non-canonical cWW

99

Motif group IL_93830.2

Basepair signature:
cWW-cWW-bif-R-cSH-tWH-tHS-cWW

0.00 -147.99 8 6

7x7 Sarcin-Ricin with intercalated A; G-bulge

100

Motif group IL_93585.1

Basepair signature:
cWW-L-L-L-tWH-cSH-L-cWW-cWW

0.00 -148.85 9 7

Kink-turn related

101

Motif group IL_74353.1

Basepair signature:
cWW-tSH-tHS-tHS-cWW-cWW

0.00 -148.91 7 4

Triple sheared with non-canonical cWW

102

Motif group IL_33557.1

Basepair signature:
cWW-cWW-tHH-L-R-R-R-L-L-L-cWW

0.00 -149.58 10 8

Kink-turn related

103

Motif group IL_60695.5

Basepair signature:
cWW-L-R-R-R-R-cWW

0.00 -149.67 7 5

104

Motif group IL_69091.1

Basepair signature:
cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW

0.00 -149.68 11 9

105

Motif group IL_75461.2

Basepair signature:
cWW-cSS-L-R-R-cWW

0.00 -150.27 7 5

180 degree turn

106

Motif group IL_69573.1

Basepair signature:
cWW-L-R-tWH-L-R-R-R-R-L-L-tWW-cWW

0.00 -151.08 11 8

107

Motif group IL_68633.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-L-cWW-cWW

0.00 -152.66 10 7

9x7 Sarcin-Ricin with inserted C; G-bulge

108

Motif group IL_76308.3

Basepair signature:
cWW-tSH-tWH-tHW-tHS-cWW-cWW

0.00 -153.27 7 4

tSH-tWH-tHS-cWW

109

Motif group IL_59423.1

Basepair signature:
cWW-L-R-R-tHS-cWW

0.00 -154.37 6 4

110

Motif group IL_87677.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -155.02 10 7

tWH-tWH-tHW-tHW

111

Motif group IL_66745.4

Basepair signature:
cWW-cWW-L-R-cWW-cWW

0.00 -155.62 8 6

112

Motif group IL_61084.1

Basepair signature:
cWW-L-R-R-L-L-L-cWW

0.00 -156.79 9 6

113

Motif group IL_39287.1

Basepair signature:
cWW-tSH-tHS-tSS-L-R-R-R-R-R-cWW

0.00 -157.19 10 7

Kink-turn related

114

Motif group IL_82426.3

Basepair signature:
cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW

0.00 -157.28 10 7

Part of G-quadruplex

115

Motif group IL_22821.1

Basepair signature:
cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW

0.00 -157.29 13 9

Pseudoknot

116

Motif group IL_92343.1

Basepair signature:
cWW-L-R-R-R-L-L-cWW

0.00 -158.20 9 7

117

Motif group IL_08296.2

Basepair signature:
cWW-tSH-R-R-cWW

0.00 -158.39 7 4

UAA/GAN related, with intercalation

118

Motif group IL_73399.1

Basepair signature:
cWW-L-R-R-R-cWW

0.00 -162.31 7 5

119

Motif group IL_19023.1

Basepair signature:
cWW-cHW-L-L-L-L-L-L-L-L-cWW

0.00 -163.93 8 6

120

Motif group IL_18894.1

Basepair signature:
cWW-tSH-tSH-tHS-tHS-cWW

0.00 -164.16 6 3

Quadruple sheared

121

Motif group IL_47743.1

Basepair signature:
cWW-cSW-tWH-cSH-L-cWS-cWW

0.00 -164.98 6 4

122

Motif group IL_39507.1

Basepair signature:
cWW-L-R-L-L-L-cWW

0.00 -165.81 7 6

123

Motif group IL_45257.1

Basepair signature:
cWW-tSH-cWH-tWH-tSS-tHW-tHH-cWW

0.00 -166.84 7 5

124

Motif group IL_26785.1

Basepair signature:
cWW-cWW-L-R-R-tSH-tHW-cSH-tHH-tHS-cWW

0.00 -167.14 9 7

10x8 Sarcin-Ricin; G-bulge

125

Motif group IL_52729.1

Basepair signature:
cWW-cWW-cWW-cWW-cWH-cWW

0.00 -168.03 7 5

126

Motif group IL_22863.1

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -168.54 10 7

tSH-tHW-tHH-tHS

127

Motif group IL_19954.1

Basepair signature:
cWW-tSH-tSH-tHS-cWW-cWW

0.00 -169.13 6 3

128

Motif group IL_94518.4

Basepair signature:
cWW-bif-cWW-cWW-cWW-cWW

0.00 -169.61 7 4

129

Motif group IL_05523.1

Basepair signature:
cWW-L-R-cWW-cSW-cSH-cWW

0.00 -169.65 8 7

130

Motif group IL_41593.1

Basepair signature:
cWW-cHW-tHW-tHW-tHW-bif-cWW

0.00 -170.32 10 6

131

Motif group IL_53523.4

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -170.79 6 4

UAA/GAN

132

Motif group IL_04346.4

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -170.99 7 6

8x7 Sarcin-Ricin; G-bulge

133

Motif group IL_01963.1

Basepair signature:
cWW-L-R-R-R-cSH-cWW

0.00 -171.24 9 7

134

Motif group IL_18472.1

Basepair signature:
cWW-R-tSW-R-tSW-L-L-cWW

0.00 -171.29 9 6

135

Motif group IL_20463.1

Basepair signature:
cWW-L-R-R-R-cWH-R-tHH-cSH-tWH-tHS-cWW

0.00 -171.58 11 8

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

136

Motif group IL_09129.1

Basepair signature:
cWW-tWH-tWH-L-R-L-tWW-cWW

0.00 -171.63 9 7

137

Motif group IL_74980.1

Basepair signature:
cWW-L-R-cWW-cWW-cWW

0.00 -174.57 8 7

138

Motif group IL_58346.1

Basepair signature:
cWW-cSH-R-R-R-L-cWW-cWW

0.00 -179.50 10 8

139

Motif group IL_34470.1

Basepair signature:
cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -180.15 8 7

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

140

Motif group IL_34590.1

Basepair signature:
cWW-L-R-R-R-R-L-L-tHH-cSH-tWH-tHS-cWW

0.00 -184.03 11 8

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

141

Motif group IL_34780.1

Basepair signature:
cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW

0.00 -187.28 11 9

Kink-turn

142

Motif group IL_51877.1

Basepair signature:
cWW-L-L-tWW-L-L-L-cWS-cWW

0.00 -188.15 10 7

143

Motif group IL_04667.1

Basepair signature:
cWW-tWH-cSW-L-R-R-L-tHS-cWW

0.00 -190.40 11 8

Kink-turn related

144

Motif group IL_94501.1

Basepair signature:
cWW-cWW-cWW-tHW-cWH-cSH-cWH-cSH-tHS-cWW

0.00 -195.31 10 8

145

Motif group IL_46732.1

Basepair signature:
cWW-R-R-tHS-cWW

0.00 -195.43 7 6

146

Motif group IL_55953.2

Basepair signature:
cWW-tSH-R-tHS-L-bif-cWW

0.00 -195.48 9 6

147

Motif group IL_51590.1

Basepair signature:
cWW-cSH-tWH-cSH-cWW-cWW

0.00 -195.55 6 5

C-loop with extra cWW pair

148

Motif group IL_92440.4

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -195.92 10 7

tWH-tWH-tHW-tHW

149

Motif group IL_90720.1

Basepair signature:
cWW-L-L-tHS-R-cWW

0.00 -198.12 5 4

150

Motif group IL_42092.1

Basepair signature:
cWW-tSH-L-L-L-cWW

0.00 -198.78 5 4

Isolated basepair with bulged bases

151

Motif group IL_59724.1

Basepair signature:
cWW-bif-tSH-tHW-cSH-tHH-bif-cWW

0.00 -199.91 9 7

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

152

Motif group IL_20549.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -203.18 7 6

Receptor of 11-nt loop-receptor motif

153

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -203.82 6 5

tSH-tHW-tWH-tHS

154

Motif group IL_16109.3

Basepair signature:
cWW-R-cSH-tWH-tHS-cWW

0.00 -206.15 5 4

5x5 Sarcin-Ricin with intercalated A; G-bulge

155

Motif group IL_60171.1

Basepair signature:
cWW-L-tWH-R-R-R-cWW

0.00 -208.98 7 5

Major groove platform; stack outside cWW

156

Motif group IL_74719.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -211.11 6 4

Double sheared

157

Motif group IL_35058.1

Basepair signature:
cWW-tSW-L-cWS-tSW-R-R-cWW

0.00 -214.56 11 9

Symmetric double minor groove platform

158

Motif group IL_58103.4

Basepair signature:
cWW-L-L-cWS-tSW-cWW

0.00 -214.91 9 7

Symmetric double minor groove platform

159

Motif group IL_31890.1

Basepair signature:
cWW-L-R-R-L-L-cWW

0.00 -217.00 8 7

160

Motif group IL_09732.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -219.65 6 5

161

Motif group IL_06300.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -220.63 7 6

162

Motif group IL_55666.1

Basepair signature:
cWW-R-cWH-L-L-L-cWW

0.00 -221.83 8 6

163

Motif group IL_23934.1

Basepair signature:
cWW-R-tWH-tHS-cWW

0.00 -222.19 8 6

tSH-tHW

164

Motif group IL_16702.1

Basepair signature:
cWW-tSH-tWH-tHW-cWH-tSS-tHW-tHH-cWW

0.00 -223.39 6 5

165

Motif group IL_86428.1

Basepair signature:
cWW-tHW-cWW-L-cSH-R-tHS-cWW-cWW

0.00 -223.44 8 6

166

Motif group IL_74271.1

Basepair signature:
cWW-L-L-L-tWH-L-L-L-cWW

0.00 -224.20 8 8

167

Motif group IL_85877.9

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -226.09 5 4

Tandem non-canonical cWW pairs

168

Motif group IL_84315.1

Basepair signature:
cWW-tHS-cWS-R-tSW-R-R-cWW

0.00 -226.32 8 6

169

Motif group IL_34915.2

Basepair signature:
cWW-R-tWH-cSH-cWW

0.00 -228.67 7 6

Receptor of 11-nt loop-receptor motif

170

Motif group IL_45944.2

Basepair signature:
cWW-L-L-tWH-L-L-L-cWW

0.00 -229.53 8 7

171

Motif group IL_01560.1

Basepair signature:
cWW-L-L-L-cSH-L-L-cWW

0.00 -230.74 10 8

172

Motif group IL_00559.1

Basepair signature:
cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-cWW-cWW

0.00 -231.99 14 12

173

Motif group IL_52451.9

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -232.05 6 4

174

Motif group IL_81215.2

Basepair signature:
cWW-cWW-L-R-R-cWW

0.00 -233.16 7 6

175

Motif group IL_61812.1

Basepair signature:
cWW-cWW-tSH-tHW-cSH-tHH-tHS-cWW-cWW

0.00 -233.47 10 8

9x8 Sarcin-Ricin; G-bulge

176

Motif group IL_19048.1

Basepair signature:
cWW-bif-bif-L-L-cSW-cWW-cSH-R-cWW

0.00 -235.12 9 7

177

Motif group IL_78994.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -235.31 8 6

178

Motif group IL_04106.2

Basepair signature:
cWW-cWW-cWW

0.00 -235.86 7 5

Isolated non-canonical cWW pair

179

Motif group IL_10517.1

Basepair signature:
cWW-cWW-tSH-tWH-tHW-tHS-cWW-cWW

0.00 -238.61 11 8

180

Motif group IL_89731.1

Basepair signature:
cWW-R-tWH-R-R-R-cWW

0.00 -241.89 7 5

181

Motif group IL_47154.3

Basepair signature:
cWW-cSW-L-R-cWW

0.00 -245.03 6 5

182

Motif group IL_29978.3

Basepair signature:
cWW-L-L-L-tHS-cWW

0.00 -245.15 6 4

183

Motif group IL_46112.1

Basepair signature:
cWW-L-L-L-L-L-cWW

0.00 -255.71 11 9

184

Motif group IL_56467.5

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -256.24 3 3

Triple sheared

185

Motif group IL_68506.1

Basepair signature:
cWW-cWW-tSH-R-tHW-tHW-tWH-L-R-cWW-cWW

0.00 -258.82 14 10

186

Motif group IL_27393.6

Basepair signature:
cWW-L-L-L-L-L-L-cWW

0.00 -259.59 8 7

187

Motif group IL_55662.1

Basepair signature:
cWW-L-L-L-L-L-L-L-L-L-cWW

0.00 -263.01 10 9

188

Motif group IL_38634.3

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -264.84 6 5

cWH basepair and non-canonical AC

189

Motif group IL_81522.1

Basepair signature:
cWW-cSH-L-cWS-cWW

0.00 -268.31 9 7

Major groove minor groove platform with intercalation; mini C-loop

190

Motif group IL_24905.8

Basepair signature:
cWW-cSW-R-cWW

0.00 -269.09 8 5

191

Motif group IL_98736.1

Basepair signature:
cWW-L-R-cSW-cWW

0.00 -274.54 7 6

Self complementary

192

Motif group IL_58960.1

Basepair signature:
cWW-L-L-tWW-L-L-L-cWW

0.00 -278.69 9 7

193

Motif group IL_61300.1

Basepair signature:
cWW-cSS-L-tHW-tSS-L-L-L-L-L-L-cWW

0.00 -279.59 11 11

194

Motif group IL_42521.1

Basepair signature:
cWW-L-L-cWW-cWW

0.00 -280.31 9 6

195

Motif group IL_79734.1

Basepair signature:
cWW-R-R-R-R-cWW

0.00 -281.35 7 6

196

Motif group IL_97601.6

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -283.28 7 6

Receptor of 11-nt loop-receptor motif

197

Motif group IL_08757.2

Basepair signature:
cWW-tSH-tHW-cWW

0.00 -283.47 6 4

tSH-tHW

198

Motif group IL_69421.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -283.99 8 6

199

Motif group IL_53738.1

Basepair signature:
cWW-R-R-R-R-R-R-R-R-R-R-cWW

0.00 -284.61 10 10

Pseudoknot

200

Motif group IL_38810.1

Basepair signature:
cWW-L-cWW

0.00 -285.94 8 7

201

Motif group IL_56455.2

Basepair signature:
cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW

0.00 -287.35 8 7

Bacterial 5S Loop E

202

Motif group IL_51087.2

Basepair signature:
cWW-L-R-R-R-L-cWW

0.00 -288.22 6 5

203

Motif group IL_45481.1

Basepair signature:
cWW-L-R-cHW-L-L-tSW-L-cWW

0.00 -289.26 11 9

204

Motif group IL_50676.4

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -291.98 8 6

Tandem non-canonical cWW pairs

205

Motif group IL_15861.5

Basepair signature:
cWW-L-L-L-cSH-L-cWW

0.00 -295.18 7 6

SSU/LSU pseudoknot

206

Motif group IL_50789.1

Basepair signature:
cWW-L-L-L-cWW

0.00 -297.30 8 7

207

Motif group IL_81389.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -297.96 5 4

UAA/GAN related

208

Motif group IL_34626.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -298.32 5 4

209

Motif group IL_08939.1

Basepair signature:
cWW-L-L-L-L-cWW

0.00 -303.24 8 6

210

Motif group IL_45289.1

Basepair signature:
cWW-bif-cSH-cSW-cWW-cWW

0.00 -304.14 6 4

211

Motif group IL_45034.1

Basepair signature:
cWW-L-L-L-L-L-L-cWW

0.00 -304.66 10 8

212

Motif group IL_48280.1

Basepair signature:
cWW-tSH-R-cWW

0.00 -307.09 6 5

213

Motif group IL_19569.2

Basepair signature:
cWW-L-L-L-L-cWW

0.00 -313.34 8 7

214

Motif group IL_01312.10

Basepair signature:
cWW-cWW-cWW

0.00 -313.34 7 6

Isolated non-canonical cWW pair

215

Motif group IL_39521.4

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -313.51 5 4

tSH-tWH-tHS

216

Motif group IL_90106.3

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -313.51 6 5

217

Motif group IL_81326.2

Basepair signature:
cWW-L-cWW-cWW

0.00 -315.63 7 5

218

Motif group IL_28564.1

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -321.29 8 7

219

Motif group IL_56105.1

Basepair signature:
cWW-tHS-cSH-tHS-cWW

0.00 -322.30 10 6

220

Motif group IL_49655.1

Basepair signature:
cWW-tWW-L-R-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -327.01 17 16

221

Motif group IL_07931.4

Basepair signature:
cWW-tSH-cWW-cWW

0.00 -327.39 7 5

222

Motif group IL_14526.1

Basepair signature:
cWW-cWW-tWW-cWW

0.00 -328.81 8 4

tWW and non-canonical cWW

223

Motif group IL_98882.2

Basepair signature:
cWW-R-cWW

0.00 -338.10 8 6

Decoding loop related

224

Motif group IL_44325.1

Basepair signature:
cWW-cWH-R-cWW

0.00 -339.47 9 6

225

Motif group IL_20245.1

Basepair signature:
cWW-L-R-R-R-R-L-L-L-L-L-L-L-L-L-L-L-L-cWW-L-R-cWW

0.00 -341.06 18 15

226

Motif group IL_90348.1

Basepair signature:
cWW-R-R-R-cWW

0.00 -347.45 7 7

227

Motif group IL_65055.1

Basepair signature:
cWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -350.51 17 16

228

Motif group IL_63596.2

Basepair signature:
cWW-tWH-cSH-L-cWS-cWW

0.00 -355.27 7 5

C-loop

229

Motif group IL_80355.1

Basepair signature:
cWW-tWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -363.06 17 16

230

Motif group IL_23544.2

Basepair signature:
cWW-L-R-R-cWW

0.00 -365.62 9 7

231

Motif group IL_09705.6

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -367.03 6 5

Double sheared

232

Motif group IL_95485.5

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -368.30 5 4

Major groove platform with extra cWW

233

Motif group IL_53034.1

Basepair signature:
cWW-cWW-cWW

0.00 -369.25 7 6

234

Motif group IL_38044.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW

0.00 -370.78 15 13

235

Motif group IL_51366.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW

0.00 -373.82 15 13

236

Motif group IL_39371.2

Basepair signature:
cWW-cWW

0.00 -374.82 7 5

237

Motif group IL_90600.1

Basepair signature:
cWW-R-R-tHS-cWW

0.00 -375.25 6 5

238

Motif group IL_53529.1

Basepair signature:
cWW-L-cWH-R-R-cWW

0.00 -375.48 6 6

239

Motif group IL_67474.2

Basepair signature:
cWW-R-R-cWW

0.00 -378.42 7 5

240

Motif group IL_84158.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -378.78 9 8

Tandem non-canonical cWW pairs

241

Motif group IL_92604.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -386.62 7 6

242

Motif group IL_14148.3

Basepair signature:
cWW-cWW-tSH-cWW

0.00 -391.64 7 6

Minor groove platform with extra cWW

243

Motif group IL_37181.1

Basepair signature:
cWW-cWW-cWW

0.00 -397.04 7 6

Isolated non-canonical cWW pair

244

Motif group IL_94878.1

Basepair signature:
cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW

0.00 -397.94 21 19

245

Motif group IL_61017.1

Basepair signature:
cWW-L-R-R-R-cWW

0.00 -398.11 7 6

246

Motif group IL_19724.1

Basepair signature:
cWW-cSH-R-R-cWW

0.00 -402.07 8 6

247

Motif group IL_99373.2

Basepair signature:
cWW-bif-L-cWW

0.00 -402.64 6 5

248

Motif group IL_86040.1

Basepair signature:
cWW-L-R-cSW-cSH-cWW

0.00 -402.84 8 5

249

Motif group IL_02284.2

Basepair signature:
cWW-L-R-cWW

0.00 -403.01 7 5

250

Motif group IL_03470.1

Basepair signature:
cWW-R-R-R-cWW

0.00 -407.34 8 7

251

Motif group IL_41414.1

Basepair signature:
cWW-cWW-R-R-cSH-R-bif-tWH-R-R-R-R-cWS-cWW

0.00 -409.96 13 11

252

Motif group IL_78030.1

Basepair signature:
cWW-L-R-R-cWW

0.00 -411.00 7 7

253

Motif group IL_22615.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-cSH-R-R-L-tHH-tHS-cWW

0.00 -421.09 17 15

254

Motif group IL_19557.1

Basepair signature:
cWW-L-cWW

0.00 -423.91 8 7

255

Motif group IL_13394.1

Basepair signature:
cWW-L-R-R-R-R-tSS-R-R-R-R-R-R-R-R-L-L-L-cWW

0.00 -424.38 18 16

256

Motif group IL_13730.9

Basepair signature:
cWW-cWW

0.00 -440.25 7 7

Multiple bulged bases

257

Motif group IL_38958.5

Basepair signature:
cWW-tHS-cWW

0.00 -441.08 6 5

Isolated tHS basepair with bulges

258

Motif group IL_18369.2

Basepair signature:
cWW-cSH-tHS-cWW

0.00 -447.42 6 5

259

Motif group IL_96042.3

Basepair signature:
cWW-cWW-cSH-R-cWW

0.00 -454.14 7 5

Major groove minor groove platform with extra cWW

260

Motif group IL_72938.1

Basepair signature:
cWW-cWW-cSH-cSH-tHS-cWW

0.00 -478.67 7 6

8-nt loop receptor

261

Motif group IL_67621.4

Basepair signature:
cWW-cWS-cWW

0.00 -489.08 7 7

Isolated cWS basepair

262

Motif group IL_24590.1

Basepair signature:
cWW-tHH-cWW

0.00 -490.40 7 6

263

Motif group IL_90991.4

Basepair signature:
cWW-cWW

0.00 -491.52 7 6

Multiple bulged bases

264

Motif group IL_76195.1

Basepair signature:
cWW-L-L-cWW

0.00 -494.14 8 6

265

Motif group IL_18459.1

Basepair signature:
cWW-cWW-R-cWW

0.00 -498.16 9 6

266

Motif group IL_54997.4

Basepair signature:
cWW-tWW-cWW

0.00 -506.26 7 6

Isolated tWW turn

267

Motif group IL_08376.2

Basepair signature:
cWW-tWH-tSW-L-cWW

0.00 -508.20 7 6

C-loop

268

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-tWH-tWH-tSS-L-L-L-bif-cWW-tSS-cSS-R-R-cWW

0.00 -516.40 15 12

Kink-turn related

269

Motif group IL_60676.4

Basepair signature:
cWW-R-cWW

0.00 -518.58 8 6

270

Motif group IL_27900.1

Basepair signature:
cWW-tSH-cWW

0.00 -525.53 8 6

Minor groove platform

271

Motif group IL_23663.4

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -527.80 8 6

272

Motif group IL_87630.3

Basepair signature:
cWW-tSH-cSH-cWW

0.00 -532.08 6 6

Major groove platform with extra pair

273

Motif group IL_36143.2

Basepair signature:
cWW-R-cWW

0.00 -538.83 8 7

274

Motif group IL_65075.1

Basepair signature:
cWW-L-L-cWW

0.00 -544.32 9 8

275

Motif group IL_35310.1

Basepair signature:
cWW-R-R-cWW

0.00 -544.42 9 8

Bulged stacked bases

276

Motif group IL_55658.1

Basepair signature:
cWW-L-L-cWW

0.00 -553.18 8 7

277

Motif group IL_94431.4

Basepair signature:
cWW-cSH-cWS-cWW

0.00 -569.10 8 7

Minor groove platform

278

Motif group IL_68741.1

Basepair signature:
cWW-R-R-R-cWW

0.00 -576.78 9 6

279

Motif group IL_09061.3

Basepair signature:
cWW-cSW-cWW

0.00 -586.99 8 6

Major groove minor groove platform; mini C-loop

280

Motif group IL_71960.4

Basepair signature:
cWW-cSH-cWW

0.00 -587.67 9 8

Minor groove platform

281

Motif group IL_03932.2

Basepair signature:
cWW-tHS-cWW

0.00 -601.32 7 7

Major groove platform with intercalation

282

Motif group IL_15795.1

Basepair signature:
cWW-cSH-R-cWW

0.00 -603.84 10 8

Minor groove platform

283

Motif group IL_19389.4

Basepair signature:
cWW-L-cSH-cWW

0.00 -604.74 7 6

Major groove platform with intercalated tWH

284

Motif group IL_67834.1

Basepair signature:
cWW-R-R-R-R-R-R-tWW-R-R-R-R-R-R-R-R-R-R-R-R-cWW

0.00 -628.37 20 18

285

Motif group IL_51971.1

Basepair signature:
cWW-L-R-cWW

0.00 -631.18 7 7

Isolated non-canonical cWW contact

286

Motif group IL_80617.1

Basepair signature:
cWW-L-R-cWW

0.00 -631.18 7 7

Isolated non-canonical cWW contact

287

Motif group IL_77341.1

Basepair signature:
cWW-L-R-cWW

0.00 -631.77 8 7

288

Motif group IL_10543.1

Basepair signature:
cWW-L-R-cWW

0.00 -650.26 8 7

Isolated non-canonical cWW contact

289

Motif group IL_28060.3

Basepair signature:
cWW-tHH-L-cWS-R-cWW

0.00 -665.20 8 6

Major groove minor groove platform with tHH

290

Motif group IL_42589.5

Basepair signature:
cWW-cHW-cWW

0.00 -665.72 7 7

Isolated cWH basepair

291

Motif group IL_04038.3

Basepair signature:
cWW-L-cWW

0.00 -673.31 8 6

Single stack bend

292

Motif group IL_77771.1

Basepair signature:
cWW-L-L-cWW

0.00 -678.37 8 7

293

Motif group IL_31504.1

Basepair signature:
cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW

0.00 -679.16 16 14

294

Motif group IL_24106.1

Basepair signature:
cWW-tSH-tWH-tWH-R-R-R-R-R-R-R-cWW

0.00 -686.06 15 13

295

Motif group IL_93270.1

Basepair signature:
cWW-L-L-cWS-cWW

0.00 -686.58 9 7

Minor groove platform

296

Motif group IL_91036.1

Basepair signature:
cWW-R-R-cWW

0.00 -693.80 9 8

297

Motif group IL_94181.3

Basepair signature:
cWW-L-cWW

0.00 -697.85 8 7

Intercalated cWS

298

Motif group IL_16160.1

Basepair signature:
cWW-L-R-cWW

0.00 -703.35 9 9

Isolated non-canonical cWW pair

299

Motif group IL_14266.1

Basepair signature:
cWW-R-cWW

0.00 -705.66 8 7

300

Motif group IL_02060.2

Basepair signature:
cWW-cHH-cWW

0.00 -709.39 7 7

Major groove platform

301

Motif group IL_80663.8

Basepair signature:
cWW-tHS-cSH-cWW

0.00 -713.80 8 7

Major groove platform

302

Motif group IL_54678.2

Basepair signature:
cWW-cWW

0.00 -720.29 8 6

303

Motif group IL_07342.2

Basepair signature:
cWW-cWW

0.00 -723.61 9 7

Bulged stacked bases

304

Motif group IL_81328.5

Basepair signature:
cWW-R-cWW

0.00 -738.17 9 8

Major groove intercalation

305

Motif group IL_06437.8

Basepair signature:
cWW-tSH-cWW

0.00 -755.73 8 7

Minor groove platform

306

Motif group IL_59521.1

Basepair signature:
cWW-cWW

0.00 -780.52 9 8

307

Motif group IL_70995.5

Basepair signature:
cWW-tSH-L-cWW

0.00 -915.37 7 7

Major groove platform; stack outside cWW

308

Motif group IL_84409.1

Basepair signature:
cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW

0.00 -4496.49 13 13

309

Motif group IL_17765.1

Basepair signature:
cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW

0.00 -5288.07 8 7

310

Motif group IL_60992.4

Basepair signature:
cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW

0.00 -5370.00 14 13

311

Motif group IL_75283.1

Basepair signature:
cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW

0.00 -5500.70 15 13

312

Motif group IL_40508.3

Basepair signature:
cWW-cWW

0.00 -9999.00 8 8

Major groove intercalation

313

Motif group IL_59137.8

Basepair signature:
cWW-cWW

0.00 -9999.00 8 8

Single bulged G

314

Motif group IL_61258.7

Basepair signature:
cWW-cWW

0.00 -9999.00 9 9

Single bulged C

315

Motif group IL_75560.1

Basepair signature:
cWW-cWW

0.00 -9999.00 10 8

Single bulged A

316

Motif group IL_80007.14

Basepair signature:
cWW-cWW

0.00 -9999.00 8 8

Single bulged A

317

Motif group IL_83039.9

Basepair signature:
cWW-cWW

0.00 -9999.00 9 8

Single bulged U

318

Motif group IL_83121.6

Basepair signature:
cWW-cSS-R-cWW

0.00 -9999.00 9 7

319

Motif group IL_85053.1

Basepair signature:
cWW-cWW

0.00 -9999.00 9 8

Single bulged G

320

Motif group IL_94592.1

Basepair signature:
cWW-cWW

0.00 -9999.00 9 8

Single bulged U

321

Motif group IL_96600.1

Basepair signature:
cWW-cWW

0.00 -9999.00 10 8

Single bulged U

322

Motif group IL_99645.1

Basepair signature:
cWW-cWW

0.00 -9999.00 9 8

Single bulged G

Coloring options: