RNA 3D Hub

JAR3D Query RF03064-CCF-3.48 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 5 Internal loop

Column numbers: 58-64, 121-125 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    GAGU-AG*C-AAA  316

    
    AAGU-AG*C-AAA  254

    
    GAGU-AG*C-CAA  125

    
    UAGU-AG*C-GAG  123

    
    GAGU-AG*U-GAA   82

    
    GAGU-AG*C-GAA   80

    
    AAGU-AG*C-GAA   60

    
    UAGU-AG*C-AAG   60

    
    UAGU-AG*U-GAG   32

    
    AAGU-AG*U-GAA   25

    
    UAGU-AG*C-AAA   25

    
    AAGU-AG*C-CAA   24

    
    AAGU-AG*U-AAA   16

    
    GAGU-AG*U-CAA   11

    
    UAGU-AG*C-GAA   11

    
    UAUU-AG*C-GAG   11

    
    GAGU-AA*U-GAA   10

    
    GAGU-AG*U-AAA    9

    
    GAUU-AG*C-GAA    9

    
    AAGU-AG*CAAAA    7

    
    AAGU-AA*U-GAA    7

    
    CGGU-AG*C-GAA    6

    
    GAUU-AG*U-GAA    6

    
    CAGU-AG*C-GAG    5

    
    CGGU-AG*C-AAA    5

    
    UAGU-AG*C-CAA    5

    
    GAGU-AG*CAAAA    4

    
    AAGU-AC*G-GAA    3

    
    AAUU-AG*C-GAA    3

    
    AAUU-AG*U-GAA    3

    
    CAGU-AG*C-CAA    3

    
    GAAU-AG*C-AAA    3

    
    GAAU-AG*U-GAA    3

    
    GAGU-AC*U-GAA    3

    
    UAGU-AG*U-GAA    3

    
    UGGU-AG*C-AAA    3

    
    UGGU-AG*C-GAA    3

    
    AAGU-AG*C-UAA    2

    
    AAGU-AG*U-CAA    2

    
    AAUU-AG*C-AAA    2

    
    GAGU-AA*C-GAA    2

    
    GUGU-AG*C-CAA    2

    
    UACU-AG*C-GAG    2

    
    UAGU-AG*U-CAA    2

    
    UUGU-AG*C-GAA    2

    
    AAGU-AG*CGAAA    1

    
    AAGU-AG*UAGAA    1

    
    AAGU-AG*UGAAA    1

    
    AAGUUAG*C-AAA    1

    
    GAGU-AG*UGAAA    1

    
    GAGU-AG*UUGAA    1

    
    GAGUUAG*C-AAA    1

    
    UAGUUAG*C-GAA    1

    
    AAAU-AG*C-GAA    1

    
    AAAU-AG*U-AAA    1

    
    AAAU-AG*U-GAA    1

    
    AAGU-AA*U-AAA    1

    
    AAGU-AG*A-AAA    1

    
    AAGU-AG*C-AAG    1

    
    AAGU-AG*C-GAG    1

    
    CAGU-AG*U-GAG    1

    
    CGGU-AC*G-GAA    1

    
    GAAU-AG*C-CAA    1

    
    GAAU-AG*C-GAA    1

    
    GAAU-AG*C-GGA    1

    
    GAGC-AG*U-GAA    1

    
    GAGG-AG*C-CAA    1

    
    GAGU-AA*C-AAA    1

    
    GAGU-AA*U-AAA    1

    
    GAGU-AC*G-GAA    1

    
    GAGU-AG*C-CGA    1

    
    GAGU-AG*C-GGA    1

    
    GAGU-AG*C-UAA    1

    
    GAGU-CG*U-CAA    1

    
    GAUC-AG*U-GAA    1

    
    GGGU-AG*C-AAA    1

    
    UAAU-AG*U-GAA    1

    
    UAGU-AA*U-GAA    1

    
    UAGU-AC*G-GAA    1

    
    UAGU-AG*C-GGG    1

    
    UAGU-AG*C-UAG    1

    
    UAGU-AG*U-AAG    1

    
    UAGU-GG*C-GAG    1

    
    UAUU-AG*U-GAG    1

    
    UGGU-AG*U-GAA    1

    
    AA-U-AG*C-AAA    1

    
    AAGU-AG*C--AA    1

    
    GAGU-AG*C-A-A    1

    
    --GU-AG*C-AAA    1

    
    Omitted sequenced and counts

    
    GAGU-AG*C-MAA    1

    
    GAGU-AG*U-ANA    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_51087.2

Basepair signature:
cWW-L-R-R-R-L-cWW

47.67 -9.90 4 2

2

Motif group IL_88269.2

Basepair signature:
cWW-tSH-tHW-L-cSH-R-cWW

42.60 0.77 4 2

6x5 Sarcin-Ricin; G-bulge

3

Motif group IL_73399.1

Basepair signature:
cWW-L-R-R-R-cWW

24.68 -12.62 6 3

4

Motif group IL_82988.1

Basepair signature:
cWW-cWW-L-L-tHS-cWW

10.72 -26.95 6 4

5

Motif group IL_60695.5

Basepair signature:
cWW-L-R-R-R-R-cWW

10.58 -21.20 6 3

6

Motif group IL_61084.1

Basepair signature:
cWW-L-R-R-L-L-L-cWW

6.84 -13.17 6 4

7

Motif group IL_74719.1

Basepair signature:
cWW-tSH-tHS-cWW

2.68 -61.45 6 3

Double sheared

8

Motif group IL_35110.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.99 -101.66 4 3

7x6 Sarcin-Ricin; G-bulge

9

Motif group IL_96860.1

Basepair signature:
cWW-cWW-cWH-L-cWW-cWW

0.78 -23.84 5 3

10

Motif group IL_83162.2

Basepair signature:
cWW-tSH-L-R-L-tHH-cWW

0.63 -60.68 7 4

tHS double platform

11

Motif group IL_51265.1

Basepair signature:
cWW-tSS-L-tSH-tHS-cWW

0.56 -65.42 5 3

Kink-turn from U4

12

Motif group IL_89193.1

Basepair signature:
cWW-L-R-R-cSH-tWH-tHS-cWW

0.35 -32.21 5 3

5x5 Sarcin-Ricin with intercalated A; G-bulge

13

Motif group IL_47108.1

Basepair signature:
cWW-tHH-L-R-R-R-cWW

0.35 -45.83 5 4

14

Motif group IL_47743.1

Basepair signature:
cWW-cSW-tWH-cSH-L-cWS-cWW

0.28 -55.83 7 4

15

Motif group IL_75461.2

Basepair signature:
cWW-cSS-L-R-R-cWW

0.21 -52.20 7 3

180 degree turn

16

Motif group IL_98711.1

Basepair signature:
cWW-tSH-tHW-tWW-cWW

0.21 -73.25 8 4

tSH-tHW-tWW

17

Motif group IL_42521.1

Basepair signature:
cWW-L-L-cWW-cWW

0.14 -44.81 5 2

18

Motif group IL_05523.1

Basepair signature:
cWW-L-R-cWW-cSW-cSH-cWW

0.14 -52.88 8 5

19

Motif group IL_61275.1

Basepair signature:
cWW-L-R-tHW-cWW

0.14 -53.68 8 5

20

Motif group IL_98353.1

Basepair signature:
cWW-cWS-L-L-cWW

0.14 -72.02 7 5

21

Motif group IL_45289.1

Basepair signature:
cWW-bif-cSH-cSW-cWW-cWW

0.14 -80.27 4 2

22

Motif group IL_29978.3

Basepair signature:
cWW-L-L-L-tHS-cWW

0.14 -83.77 5 2

23

Motif group IL_47002.1

Basepair signature:
cWW-tSH-L-L-tHH-cWW

0.07 -46.33 6 4

24

Motif group IL_51590.1

Basepair signature:
cWW-cSH-tWH-cSH-cWW-cWW

0.07 -49.68 8 4

C-loop with extra cWW pair

25

Motif group IL_93094.1

Basepair signature:
cWW-tSH-tHH-R-R-R-cWW

0.07 -51.21 8 4

Reverse kink-turn

26

Motif group IL_31890.1

Basepair signature:
cWW-L-R-R-L-L-cWW

0.07 -66.43 8 4

27

Motif group IL_09705.6

Basepair signature:
cWW-tSH-tHS-cWW

0.07 -116.83 3 2

Double sheared

28

Motif group IL_89587.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -39.16 7 4

29

Motif group IL_79393.7

Basepair signature:
cWW-L-R-R-L-L-L-L-cWW

0.00 -40.44 6 4

30

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -41.95 8 5

Kink-turn related

31

Motif group IL_81215.2

Basepair signature:
cWW-cWW-L-R-R-cWW

0.00 -53.65 5 3

32

Motif group IL_17470.4

Basepair signature:
cWW-R-tHW-tHW-tWW-cWW

0.00 -55.08 5 4

tHW-tHW cross-strand stack

33

Motif group IL_90157.1

Basepair signature:
cWW-L-L-L-L-tHH-cWS-cWW

0.00 -57.38 7 5

34

Motif group IL_70627.1

Basepair signature:
cWW-R-R-tWH-L-R-cWW

0.00 -59.24 7 4

UAA/GAN related

35

Motif group IL_94351.1

Basepair signature:
cWW-tSH-L-R-L-tHS-cWW

0.00 -59.46 10 6

36

Motif group IL_68057.1

Basepair signature:
cWW-tSS-L-tSH-tHS-cWW-cWW

0.00 -62.09 6 5

Kink-turn

37

Motif group IL_46401.1

Basepair signature:
cWW-L-L-L-L-tHH-cWW

0.00 -64.31 7 5

38

Motif group IL_16456.1

Basepair signature:
cWW-tSH-tSH-tHS-tSS-tSS-R-cWW

0.00 -64.40 7 4

Kink-turn

39

Motif group IL_89197.1

Basepair signature:
cWW-tSH-R-tHH-tHS-cWW

0.00 -65.17 7 4

40

Motif group IL_08296.2

Basepair signature:
cWW-tSH-R-R-cWW

0.00 -65.65 5 3

UAA/GAN related, with intercalation

41

Motif group IL_70480.1

Basepair signature:
cWW-L-R-L-tHW-L-L-cWW

0.00 -66.23 8 5

42

Motif group IL_74051.1

Basepair signature:
cWW-tSS-L-tSH-tHS-L-cWW

0.00 -67.04 6 4

Kink-turn

43

Motif group IL_59423.1

Basepair signature:
cWW-L-R-R-tHS-cWW

0.00 -67.83 5 3

44

Motif group IL_92343.1

Basepair signature:
cWW-L-R-R-R-L-L-cWW

0.00 -69.68 6 4

45

Motif group IL_36582.1

Basepair signature:
cWW-L-R-L-tHH-L-tWH-tHS-cWW

0.00 -70.68 7 4

8x6 Sarcin-Ricin with inserted A; G-bulge

46

Motif group IL_60171.1

Basepair signature:
cWW-L-tWH-R-R-R-cWW

0.00 -72.84 5 4

Major groove platform; stack outside cWW

47

Motif group IL_08757.2

Basepair signature:
cWW-tSH-tHW-cWW

0.00 -73.93 4 3

tSH-tHW

48

Motif group IL_16109.3

Basepair signature:
cWW-R-cSH-tWH-tHS-cWW

0.00 -75.45 3 2

5x5 Sarcin-Ricin with intercalated A; G-bulge

49

Motif group IL_06300.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -76.98 5 4

50

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-L-L-L-bif-cWW

0.00 -77.66 8 5

Reverse turn

51

Motif group IL_15978.1

Basepair signature:
cWW-R-cSW-R-R-tHS-cWW

0.00 -77.97 5 5

52

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -78.11 4 3

tSH-tHH-tHS

53

Motif group IL_66745.4

Basepair signature:
cWW-cWW-L-R-cWW-cWW

0.00 -79.07 6 4

54

Motif group IL_69457.1

Basepair signature:
cWW-L-L-L-L-L-tHH-tHS-cWW

0.00 -79.21 6 4

55

Motif group IL_95688.1

Basepair signature:
cWW-L-cSS-cSS-L-R-cWW

0.00 -79.91 6 5

56

Motif group IL_42092.1

Basepair signature:
cWW-tSH-L-L-L-cWW

0.00 -79.92 8 4

Isolated basepair with bulged bases

57

Motif group IL_17971.1

Basepair signature:
cWW-tWW-L-tWW-L-cWW

0.00 -80.48 8 6

58

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -81.20 5 4

8x6 Sarcin-Ricin with bulged A; G-bulge

59

Motif group IL_29821.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -81.36 6 4

UAA/GAN with extra stack

60

Motif group IL_38810.1

Basepair signature:
cWW-L-cWW

0.00 -81.71 7 4

61

Motif group IL_80412.1

Basepair signature:
cWW-R-R-R-R-R-tWS-cWW

0.00 -81.80 8 5

62

Motif group IL_96878.1

Basepair signature:
cWW-tSH-L-R-R-L-L-L-cWW

0.00 -83.65 6 5

63

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-cWW-cWW

0.00 -84.93 7 5

64

Motif group IL_65876.1

Basepair signature:
cWW-tSH-L-R-R-R-cWW

0.00 -85.19 9 6

Kink-turn

65

Motif group IL_38634.3

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -85.23 6 3

cWH basepair and non-canonical AC

66

Motif group IL_54670.1

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -86.29 5 4

tSH-tSH-tHH-tHS

67

Motif group IL_18472.1

Basepair signature:
cWW-R-tSW-R-tSW-L-L-cWW

0.00 -87.17 7 4

68

Motif group IL_24606.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-L-cWW

0.00 -87.48 6 4

8x6 Sarcin-Ricin with inserted Y; G-bulge

69

Motif group IL_50676.4

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -87.79 6 4

Tandem non-canonical cWW pairs

70

Motif group IL_64879.1

Basepair signature:
cWW-tSH-tSH-tHS-tHS-cWW

0.00 -88.24 5 3

Triple sheared related

71

Motif group IL_39507.1

Basepair signature:
cWW-L-R-L-L-L-cWW

0.00 -88.36 9 5

72

Motif group IL_69979.1

Basepair signature:
cWW-L-R-R-R-R-L-L-L-cWW

0.00 -88.49 7 6

73

Motif group IL_34907.1

Basepair signature:
cWW-R-tWH-L-tHS-cWW

0.00 -89.01 5 3

UAA/GAN

74

Motif group IL_55666.1

Basepair signature:
cWW-R-cWH-L-L-L-cWW

0.00 -90.73 7 5

75

Motif group IL_23934.1

Basepair signature:
cWW-R-tWH-tHS-cWW

0.00 -90.85 6 4

tSH-tHW

76

Motif group IL_95993.1

Basepair signature:
cWW-R-tSS-tWW-tWW-cWW

0.00 -92.30 9 7

Kink-turn related

77

Motif group IL_64842.1

Basepair signature:
cWW-L-L-L-tWH-cSH-cWW

0.00 -93.59 8 4

78

Motif group IL_46732.1

Basepair signature:
cWW-R-R-tHS-cWW

0.00 -94.49 8 5

79

Motif group IL_80884.1

Basepair signature:
cWW-cWW-R-R-R-R-cWW

0.00 -95.31 8 5

80

Motif group IL_58346.1

Basepair signature:
cWW-cSH-R-R-R-L-cWW-cWW

0.00 -95.48 9 5

81

Motif group IL_62827.1

Basepair signature:
cWW-R-cWH-R-R-R-cWW

0.00 -96.45 7 5

cWH basepair with bulged bases

82

Motif group IL_24905.8

Basepair signature:
cWW-cSW-R-cWW

0.00 -96.52 6 4

83

Motif group IL_74736.1

Basepair signature:
cWW-tSH-L-R-R-L-cWW

0.00 -96.84 8 6

84

Motif group IL_81522.1

Basepair signature:
cWW-cSH-L-cWS-cWW

0.00 -97.03 7 4

Major groove minor groove platform with intercalation; mini C-loop

85

Motif group IL_20549.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -97.13 7 4

Receptor of 11-nt loop-receptor motif

86

Motif group IL_56501.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -97.89 6 3

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

87

Motif group IL_70801.1

Basepair signature:
cWW-L-R-R-tWW-cWW-cWW-cWW

0.00 -98.00 8 4

88

Motif group IL_77870.1

Basepair signature:
cWW-bif-L-L-L-tHS-cWW-cWW

0.00 -98.16 10 6

89

Motif group IL_39443.1

Basepair signature:
cWW-L-L-tWH-L-R-R-L-cWW

0.00 -98.68 6 5

90

Motif group IL_90720.1

Basepair signature:
cWW-L-L-tHS-R-cWW

0.00 -99.21 7 4

91

Motif group IL_56105.1

Basepair signature:
cWW-tHS-cSH-tHS-cWW

0.00 -99.29 6 3

92

Motif group IL_09732.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -99.33 8 5

93

Motif group IL_68780.2

Basepair signature:
cWW-tSH-tSH-tHS-tSS-R-cWW

0.00 -100.17 8 5

Kink-turn

94

Motif group IL_11882.1

Basepair signature:
cWW-L-R-R-tHW-tHW-L-R-cWW

0.00 -100.39 7 4

95

Motif group IL_03420.1

Basepair signature:
cWW-R-cSH-tWH-tSH-tHS-cWW

0.00 -101.01 6 5

tSH-tHS-tHW

96

Motif group IL_66497.1

Basepair signature:
cWW-tWH-L-R-tHS-bif-cWW

0.00 -101.86 7 5

97

Motif group IL_29549.7

Basepair signature:
cWW-tSH-tSH-tHS-tSS-R-cWW

0.00 -101.87 5 4

Kink-turn

98

Motif group IL_34915.2

Basepair signature:
cWW-R-tWH-cSH-cWW

0.00 -102.03 7 4

Receptor of 11-nt loop-receptor motif

99

Motif group IL_98876.1

Basepair signature:
cWW-cWW-L-R-R-tHW-bif-cWW

0.00 -102.95 8 6

100

Motif group IL_78994.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -104.03 6 4

101

Motif group IL_57188.2

Basepair signature:
cWW-tWW-cSH-L-tWW-cSH-cWW

0.00 -104.94 5 4.5

Kink-turn related

102

Motif group IL_29509.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -106.11 9 5

8x7 Sarcin-Ricin; G-bulge

103

Motif group IL_01963.1

Basepair signature:
cWW-L-R-R-R-cSH-cWW

0.00 -106.18 10 6

104

Motif group IL_72416.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -106.35 7 3

105

Motif group IL_81389.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -107.26 4 2

UAA/GAN related

106

Motif group IL_04736.1

Basepair signature:
cWW-tSW-L-R-R-L-tWS-cWW

0.00 -107.64 7 6

107

Motif group IL_96596.1

Basepair signature:
cWW-tSH-tHW-L-R-cWW-cWW

0.00 -107.85 9 5

108

Motif group IL_01502.1

Basepair signature:
cWW-L-R-R-L-L-L-L-cWW-cWW

0.00 -108.23 9 6

109

Motif group IL_14397.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -109.72 6 4

110

Motif group IL_48280.1

Basepair signature:
cWW-tSH-R-cWW

0.00 -109.77 4 3

111

Motif group IL_53318.1

Basepair signature:
cWW-cWW-tWH-tSH-tHS-cWW

0.00 -110.26 6 4

112

Motif group IL_44325.1

Basepair signature:
cWW-cWH-R-cWW

0.00 -110.79 5 3

113

Motif group IL_22436.1

Basepair signature:
cWW-L-cSS-tWH-tHW-cWW-cWW

0.00 -112.22 8 5

Kink-turn related

114

Motif group IL_90922.1

Basepair signature:
cWW-tSH-tWH-tHS-tSS-tSS-R-cWW

0.00 -112.56 8 6

Kink-turn

115

Motif group IL_53529.1

Basepair signature:
cWW-L-cWH-R-R-cWW

0.00 -113.97 4 3

116

Motif group IL_28564.1

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -113.97 8 4

117

Motif group IL_36973.4

Basepair signature:
cWW-tSH-L-R-R-R-L-L-cWW-cWW

0.00 -115.69 6 5

118

Motif group IL_52451.9

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -115.93 5 3

119

Motif group IL_93585.1

Basepair signature:
cWW-L-L-L-tWH-cSH-L-cWW-cWW

0.00 -118.11 8 5

Kink-turn related

120

Motif group IL_90538.2

Basepair signature:
cWW-tSS-L-tSH-tSS-tHS-L-R-L-cWW

0.00 -119.26 7 6

Kink-turn

121

Motif group IL_14526.1

Basepair signature:
cWW-cWW-tWW-cWW

0.00 -119.49 6 3

tWW and non-canonical cWW

122

Motif group IL_47154.3

Basepair signature:
cWW-cSW-L-R-cWW

0.00 -119.87 6 4

123

Motif group IL_53523.4

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -119.91 4 3

UAA/GAN

124

Motif group IL_95811.1

Basepair signature:
cWW-L-L-L-cWW-L-bif-cWW

0.00 -119.92 9 6

Vitamin B12 Aptamer

125

Motif group IL_81326.2

Basepair signature:
cWW-L-cWW-cWW

0.00 -121.77 6 3

126

Motif group IL_90600.1

Basepair signature:
cWW-R-R-tHS-cWW

0.00 -122.55 6 3

127

Motif group IL_37722.1

Basepair signature:
cWW-cWW-tSH-tWH-tHS-tSS-R-cWW

0.00 -122.99 8 5

128

Motif group IL_74980.1

Basepair signature:
cWW-L-R-cWW-cWW-cWW

0.00 -123.17 8 6

129

Motif group IL_04106.2

Basepair signature:
cWW-cWW-cWW

0.00 -123.76 5 3

Isolated non-canonical cWW pair

130

Motif group IL_97253.1

Basepair signature:
cWW-L-R-R-R-R-R-R-R-L-L-cWW

0.00 -123.93 10 7

131

Motif group IL_97601.6

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -124.55 7 4

Receptor of 11-nt loop-receptor motif

132

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-L-tSH-tHS-tHS-cWW

0.00 -124.74 9 6

Kink-turn

133

Motif group IL_93830.2

Basepair signature:
cWW-cWW-bif-R-cSH-tWH-tHS-cWW

0.00 -124.86 5 4

7x7 Sarcin-Ricin with intercalated A; G-bulge

134

Motif group IL_58103.4

Basepair signature:
cWW-L-L-cWS-tSW-cWW

0.00 -125.98 7 4

Symmetric double minor groove platform

135

Motif group IL_49767.3

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -126.47 5 3

UAA/GAN with extra cWW

136

Motif group IL_35058.1

Basepair signature:
cWW-tSW-L-cWS-tSW-R-R-cWW

0.00 -126.56 8 6

Symmetric double minor groove platform

137

Motif group IL_92604.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -126.78 4 3

138

Motif group IL_98882.2

Basepair signature:
cWW-R-cWW

0.00 -129.59 5 4

Decoding loop related

139

Motif group IL_84315.1

Basepair signature:
cWW-tHS-cWS-R-tSW-R-R-cWW

0.00 -130.04 6 4

140

Motif group IL_63750.1

Basepair signature:
cWW-tSS-cSS-tWW-L-tSH-R-R-cWW

0.00 -134.68 10 7

141

Motif group IL_69421.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -135.13 6 4

142

Motif group IL_68633.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-L-cWW-cWW

0.00 -136.65 7 6

9x7 Sarcin-Ricin with inserted C; G-bulge

143

Motif group IL_07931.4

Basepair signature:
cWW-tSH-cWW-cWW

0.00 -137.15 5 3

144

Motif group IL_09129.1

Basepair signature:
cWW-tWH-tWH-L-R-L-tWW-cWW

0.00 -137.58 7 6

145

Motif group IL_96942.1

Basepair signature:
cWW-L-R-R-R-tHW-tHW-bif-cWW

0.00 -138.58 9 7

146

Motif group IL_85877.9

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -139.52 5 3

Tandem non-canonical cWW pairs

147

Motif group IL_90106.3

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -139.61 5 3

148

Motif group IL_74184.1

Basepair signature:
cWW-L-L-L-L-L-tHS-cWW

0.00 -140.22 8 7

149

Motif group IL_63596.2

Basepair signature:
cWW-tWH-cSH-L-cWS-cWW

0.00 -141.70 5 3

C-loop

150

Motif group IL_67474.2

Basepair signature:
cWW-R-R-cWW

0.00 -142.91 5 2

151

Motif group IL_98736.1

Basepair signature:
cWW-L-R-cSW-cWW

0.00 -143.40 7 5

Self complementary

152

Motif group IL_90348.1

Basepair signature:
cWW-R-R-R-cWW

0.00 -144.67 7 4

153

Motif group IL_32181.1

Basepair signature:
cWW-cWW-cWW-L-cSW-L-R-R-R-cWW

0.00 -146.97 10 9

154

Motif group IL_15795.1

Basepair signature:
cWW-cSH-R-cWW

0.00 -147.76 7 4

Minor groove platform

155

Motif group IL_23544.2

Basepair signature:
cWW-L-R-R-cWW

0.00 -147.87 7 4

156

Motif group IL_85630.1

Basepair signature:
cWW-cWW-L-R-R-R-R-R-L-tHS-cWW

0.00 -148.62 10 8

157

Motif group IL_01312.10

Basepair signature:
cWW-cWW-cWW

0.00 -148.82 5 3

Isolated non-canonical cWW pair

158

Motif group IL_99373.2

Basepair signature:
cWW-bif-L-cWW

0.00 -151.00 6 3

159

Motif group IL_50789.1

Basepair signature:
cWW-L-L-L-cWW

0.00 -151.49 8 5

160

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-L-L-L-L-cWW

0.00 -152.10 8 7

Reverse kink-turn related

161

Motif group IL_86040.1

Basepair signature:
cWW-L-R-cSW-cSH-cWW

0.00 -152.87 6 3

162

Motif group IL_87677.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -153.79 9 6

tWH-tWH-tHW-tHW

163

Motif group IL_65320.1

Basepair signature:
cWW-L-R-R-R-L-tHW-L-R-R-L-cWW

0.00 -155.23 11 8

164

Motif group IL_33557.1

Basepair signature:
cWW-cWW-tHH-L-R-R-R-L-L-L-cWW

0.00 -155.91 8 7

Kink-turn related

165

Motif group IL_17069.2

Basepair signature:
cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW

0.00 -156.52 7 6

Kink-turn related

166

Motif group IL_34626.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -157.10 5 4

167

Motif group IL_19569.2

Basepair signature:
cWW-L-L-L-L-cWW

0.00 -157.23 7 4

168

Motif group IL_56867.1

Basepair signature:
cWW-L-R-R-L-L-cSS-L-cWW-cWW

0.00 -158.42 9 8

169

Motif group IL_76900.1

Basepair signature:
cWW-tSH-tSH-tHS-tSS-L-R-cWW

0.00 -159.60 10 6

Kink-turn

170

Motif group IL_04346.4

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -159.62 6 5

8x7 Sarcin-Ricin; G-bulge

171

Motif group IL_21121.1

Basepair signature:
cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW

0.00 -162.05 6 5

172

Motif group IL_54896.1

Basepair signature:
cWW-L-L-L-L-L-L-tSS-cWW

0.00 -168.58 9 8

173

Motif group IL_38958.5

Basepair signature:
cWW-tHS-cWW

0.00 -169.30 3 2

Isolated tHS basepair with bulges

174

Motif group IL_79734.1

Basepair signature:
cWW-R-R-R-R-cWW

0.00 -169.32 7 5

175

Motif group IL_37181.1

Basepair signature:
cWW-cWW-cWW

0.00 -171.24 5 4

Isolated non-canonical cWW pair

176

Motif group IL_02284.2

Basepair signature:
cWW-L-R-cWW

0.00 -171.60 5 3

177

Motif group IL_74353.1

Basepair signature:
cWW-tSH-tHS-tHS-cWW-cWW

0.00 -172.32 6 4

Triple sheared with non-canonical cWW

178

Motif group IL_55953.2

Basepair signature:
cWW-tSH-R-tHS-L-bif-cWW

0.00 -172.42 8 5

179

Motif group IL_78030.1

Basepair signature:
cWW-L-R-R-cWW

0.00 -172.88 6 4

180

Motif group IL_76308.3

Basepair signature:
cWW-tSH-tWH-tHW-tHS-cWW-cWW

0.00 -173.16 8 5

tSH-tWH-tHS-cWW

181

Motif group IL_94518.4

Basepair signature:
cWW-bif-cWW-cWW-cWW-cWW

0.00 -173.18 6 4

182

Motif group IL_59724.1

Basepair signature:
cWW-bif-tSH-tHW-cSH-tHH-bif-cWW

0.00 -173.31 8 6

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

183

Motif group IL_39287.1

Basepair signature:
cWW-tSH-tHS-tSS-L-R-R-R-R-R-cWW

0.00 -174.91 10 7

Kink-turn related

184

Motif group IL_84158.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -176.70 8 5

Tandem non-canonical cWW pairs

185

Motif group IL_52729.1

Basepair signature:
cWW-cWW-cWW-cWW-cWH-cWW

0.00 -177.36 7 5

186

Motif group IL_18369.2

Basepair signature:
cWW-cSH-tHS-cWW

0.00 -177.58 7 3

187

Motif group IL_66584.4

Basepair signature:
cWW-tSH-tSH-tHH-tHS-cWW

0.00 -177.79 5 4

tSH-tSH-tHH-tHS

188

Motif group IL_61017.1

Basepair signature:
cWW-L-R-R-R-cWW

0.00 -178.59 5 4

189

Motif group IL_14148.3

Basepair signature:
cWW-cWW-tSH-cWW

0.00 -182.16 5 3

Minor groove platform with extra cWW

190

Motif group IL_92440.4

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -183.70 9 6

tWH-tWH-tHW-tHW

191

Motif group IL_18894.1

Basepair signature:
cWW-tSH-tSH-tHS-tHS-cWW

0.00 -185.65 7 4

Quadruple sheared

192

Motif group IL_60676.4

Basepair signature:
cWW-R-cWW

0.00 -185.85 6 3

193

Motif group IL_66414.4

Basepair signature:
cWW-cWW-tSH-tHS-tHS-L-R-cWW

0.00 -186.25 7 6

Triple sheared with non-canonical cWW

194

Motif group IL_72938.1

Basepair signature:
cWW-cWW-cSH-cSH-tHS-cWW

0.00 -186.64 4 2

8-nt loop receptor

195

Motif group IL_34470.1

Basepair signature:
cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -187.97 8 7

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

196

Motif group IL_55896.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -189.06 5 3

Triple sheared

197

Motif group IL_53034.1

Basepair signature:
cWW-cWW-cWW

0.00 -189.21 7 4

198

Motif group IL_95485.5

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -191.65 4 3

Major groove platform with extra cWW

199

Motif group IL_12750.1

Basepair signature:
cWW-L-R-cWW-L-R-R-R-R-L-L-cWW

0.00 -191.68 11 10

200

Motif group IL_04667.1

Basepair signature:
cWW-tWH-cSW-L-R-R-L-tHS-cWW

0.00 -192.12 9 8

Kink-turn related

201

Motif group IL_19724.1

Basepair signature:
cWW-cSH-R-R-cWW

0.00 -192.82 6 4

202

Motif group IL_96042.3

Basepair signature:
cWW-cWW-cSH-R-cWW

0.00 -193.61 5 3

Major groove minor groove platform with extra cWW

203

Motif group IL_03470.1

Basepair signature:
cWW-R-R-R-cWW

0.00 -198.79 6 5

204

Motif group IL_19954.1

Basepair signature:
cWW-tSH-tSH-tHS-cWW-cWW

0.00 -199.90 6 5

205

Motif group IL_89055.1

Basepair signature:
cWW-cWW-L-R-R-L-L-L-L-L-cWW-cWW

0.00 -200.87 10 9

206

Motif group IL_22863.1

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -200.96 9 8

tSH-tHW-tHH-tHS

207

Motif group IL_46112.1

Basepair signature:
cWW-L-L-L-L-L-cWW

0.00 -200.99 10 7

208

Motif group IL_01560.1

Basepair signature:
cWW-L-L-L-cSH-L-L-cWW

0.00 -205.28 9 7

209

Motif group IL_55662.1

Basepair signature:
cWW-L-L-L-L-L-L-L-L-L-cWW

0.00 -205.50 9 7

210

Motif group IL_20463.1

Basepair signature:
cWW-L-R-R-R-cWH-R-tHH-cSH-tWH-tHS-cWW

0.00 -207.13 10 8

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

211

Motif group IL_69573.1

Basepair signature:
cWW-L-R-tWH-L-R-R-R-R-L-L-tWW-cWW

0.00 -207.81 11 9

212

Motif group IL_69091.1

Basepair signature:
cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW

0.00 -211.25 12 9

213

Motif group IL_08939.1

Basepair signature:
cWW-L-L-L-L-cWW

0.00 -211.93 9 6

214

Motif group IL_27393.6

Basepair signature:
cWW-L-L-L-L-L-L-cWW

0.00 -212.97 9 6

215

Motif group IL_39521.4

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -213.97 3 2

tSH-tWH-tHS

216

Motif group IL_61812.1

Basepair signature:
cWW-cWW-tSH-tHW-cSH-tHH-tHS-cWW-cWW

0.00 -214.84 10 7

9x8 Sarcin-Ricin; G-bulge

217

Motif group IL_34590.1

Basepair signature:
cWW-L-R-R-R-R-L-L-tHH-cSH-tWH-tHS-cWW

0.00 -215.00 10 8

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

218

Motif group IL_86428.1

Basepair signature:
cWW-tHW-cWW-L-cSH-R-tHS-cWW-cWW

0.00 -215.37 7 4

219

Motif group IL_54678.2

Basepair signature:
cWW-cWW

0.00 -215.88 6 3

220

Motif group IL_28060.3

Basepair signature:
cWW-tHH-L-cWS-R-cWW

0.00 -216.51 5 4

Major groove minor groove platform with tHH

221

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -216.52 6 5

tSH-tHW-tWH-tHS

222

Motif group IL_94501.1

Basepair signature:
cWW-cWW-cWW-tHW-cWH-cSH-cWH-cSH-tHS-cWW

0.00 -218.35 10 8

223

Motif group IL_85931.1

Basepair signature:
cWW-cSW-tSH-tHH-tSS-tSS-R-R-cWW

0.00 -219.43 9 6

Kink-turn

224

Motif group IL_58819.1

Basepair signature:
cWW-L-R-R-tWH-L-tSS-tHW-R-tHH-cWW-cWW

0.00 -222.60 9 8

225

Motif group IL_41593.1

Basepair signature:
cWW-cHW-tHW-tHW-tHW-bif-cWW

0.00 -224.19 11 8

226

Motif group IL_23663.4

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -224.25 5 3

227

Motif group IL_15861.5

Basepair signature:
cWW-L-L-L-cSH-L-cWW

0.00 -224.46 7 5

SSU/LSU pseudoknot

228

Motif group IL_19023.1

Basepair signature:
cWW-cHW-L-L-L-L-L-L-L-L-cWW

0.00 -226.00 9 8

229

Motif group IL_90991.4

Basepair signature:
cWW-cWW

0.00 -226.90 7 4

Multiple bulged bases

230

Motif group IL_10517.1

Basepair signature:
cWW-cWW-tSH-tWH-tHW-tHS-cWW-cWW

0.00 -229.25 8 6

231

Motif group IL_35310.1

Basepair signature:
cWW-R-R-cWW

0.00 -231.10 7 4

Bulged stacked bases

232

Motif group IL_13730.9

Basepair signature:
cWW-cWW

0.00 -232.41 5 4

Multiple bulged bases

233

Motif group IL_26785.1

Basepair signature:
cWW-cWW-L-R-R-tSH-tHW-cSH-tHH-tHS-cWW

0.00 -233.71 10 8

10x8 Sarcin-Ricin; G-bulge

234

Motif group IL_55658.1

Basepair signature:
cWW-L-L-cWW

0.00 -234.51 7 4

235

Motif group IL_67621.4

Basepair signature:
cWW-cWS-cWW

0.00 -234.76 6 4

Isolated cWS basepair

236

Motif group IL_22821.1

Basepair signature:
cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW

0.00 -234.82 13 10

Pseudoknot

237

Motif group IL_76195.1

Basepair signature:
cWW-L-L-cWW

0.00 -236.38 6 4

238

Motif group IL_19048.1

Basepair signature:
cWW-bif-bif-L-L-cSW-cWW-cSH-R-cWW

0.00 -240.71 10 6

239

Motif group IL_58390.1

Basepair signature:
cWW-bif-tSW-L-L-L-cWW-cSW-R-cWW

0.00 -240.90 9 7

Minor groove platform related

240

Motif group IL_18459.1

Basepair signature:
cWW-cWW-R-cWW

0.00 -246.62 7 4

241

Motif group IL_65075.1

Basepair signature:
cWW-L-L-cWW

0.00 -251.02 8 5

242

Motif group IL_34780.1

Basepair signature:
cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW

0.00 -251.64 11 10

Kink-turn

243

Motif group IL_87630.3

Basepair signature:
cWW-tSH-cSH-cWW

0.00 -254.08 5 3

Major groove platform with extra pair

244

Motif group IL_00559.1

Basepair signature:
cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-cWW-cWW

0.00 -254.62 15 12

245

Motif group IL_54997.4

Basepair signature:
cWW-tWW-cWW

0.00 -255.26 5 3

Isolated tWW turn

246

Motif group IL_27900.1

Basepair signature:
cWW-tSH-cWW

0.00 -257.70 7 4

Minor groove platform

247

Motif group IL_56467.5

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -259.06 4 3

Triple sheared

248

Motif group IL_24590.1

Basepair signature:
cWW-tHH-cWW

0.00 -259.73 7 4

249

Motif group IL_36143.2

Basepair signature:
cWW-R-cWW

0.00 -262.88 6 4

250

Motif group IL_45034.1

Basepair signature:
cWW-L-L-L-L-L-L-cWW

0.00 -265.02 10 7

251

Motif group IL_45257.1

Basepair signature:
cWW-tSH-cWH-tWH-tSS-tHW-tHH-cWW

0.00 -268.76 10 7

252

Motif group IL_61300.1

Basepair signature:
cWW-cSS-L-tHW-tSS-L-L-L-L-L-L-cWW

0.00 -271.36 12 10

253

Motif group IL_94431.4

Basepair signature:
cWW-cSH-cWS-cWW

0.00 -273.94 5 4

Minor groove platform

254

Motif group IL_16702.1

Basepair signature:
cWW-tSH-tWH-tHW-cWH-tSS-tHW-tHH-cWW

0.00 -278.74 7 6

255

Motif group IL_39371.2

Basepair signature:
cWW-cWW

0.00 -285.64 7 5

256

Motif group IL_42032.1

Basepair signature:
cWW-tWH-R-R-R-cSH-cWW-cWW

0.00 -285.99 6 4

257

Motif group IL_04038.3

Basepair signature:
cWW-L-cWW

0.00 -287.02 5 3

Single stack bend

258

Motif group IL_08376.2

Basepair signature:
cWW-tWH-tSW-L-cWW

0.00 -290.73 7 5

C-loop

259

Motif group IL_59521.1

Basepair signature:
cWW-cWW

0.00 -295.23 6 5

260

Motif group IL_19557.1

Basepair signature:
cWW-L-cWW

0.00 -303.16 7 6

261

Motif group IL_53738.1

Basepair signature:
cWW-R-R-R-R-R-R-R-R-R-R-cWW

0.00 -307.93 14 11

Pseudoknot

262

Motif group IL_51877.1

Basepair signature:
cWW-L-L-tWW-L-L-L-cWS-cWW

0.00 -308.35 8 6

263

Motif group IL_93270.1

Basepair signature:
cWW-L-L-cWS-cWW

0.00 -308.64 7 4

Minor groove platform

264

Motif group IL_56455.2

Basepair signature:
cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW

0.00 -310.42 9 8

Bacterial 5S Loop E

265

Motif group IL_19389.4

Basepair signature:
cWW-L-cSH-cWW

0.00 -317.03 6 4

Major groove platform with intercalated tWH

266

Motif group IL_68741.1

Basepair signature:
cWW-R-R-R-cWW

0.00 -318.49 6 5

267

Motif group IL_91036.1

Basepair signature:
cWW-R-R-cWW

0.00 -319.85 7 4

268

Motif group IL_68506.1

Basepair signature:
cWW-cWW-tSH-R-tHW-tHW-tWH-L-R-cWW-cWW

0.00 -324.51 13 11

269

Motif group IL_03932.2

Basepair signature:
cWW-tHS-cWW

0.00 -328.89 5 4

Major groove platform with intercalation

270

Motif group IL_38044.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW

0.00 -336.07 16 15

271

Motif group IL_51971.1

Basepair signature:
cWW-L-R-cWW

0.00 -339.28 7 5

Isolated non-canonical cWW contact

272

Motif group IL_80617.1

Basepair signature:
cWW-L-R-cWW

0.00 -339.28 7 5

Isolated non-canonical cWW contact

273

Motif group IL_09061.3

Basepair signature:
cWW-cSW-cWW

0.00 -339.72 5 4

Major groove minor groove platform; mini C-loop

274

Motif group IL_77341.1

Basepair signature:
cWW-L-R-cWW

0.00 -340.39 7 5

275

Motif group IL_94181.3

Basepair signature:
cWW-L-cWW

0.00 -341.90 5 4

Intercalated cWS

276

Motif group IL_14266.1

Basepair signature:
cWW-R-cWW

0.00 -343.27 6 4

277

Motif group IL_41414.1

Basepair signature:
cWW-cWW-R-R-cSH-R-bif-tWH-R-R-R-R-cWS-cWW

0.00 -346.40 13 12

278

Motif group IL_07342.2

Basepair signature:
cWW-cWW

0.00 -348.09 5 4

Bulged stacked bases

279

Motif group IL_42589.5

Basepair signature:
cWW-cHW-cWW

0.00 -348.44 5 4

Isolated cWH basepair

280

Motif group IL_10543.1

Basepair signature:
cWW-L-R-cWW

0.00 -351.16 6 5

Isolated non-canonical cWW contact

281

Motif group IL_77771.1

Basepair signature:
cWW-L-L-cWW

0.00 -351.41 8 4

282

Motif group IL_51366.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW

0.00 -356.34 16 15

283

Motif group IL_13394.1

Basepair signature:
cWW-L-R-R-R-R-tSS-R-R-R-R-R-R-R-R-L-L-L-cWW

0.00 -358.68 17 13

284

Motif group IL_02060.2

Basepair signature:
cWW-cHH-cWW

0.00 -364.38 7 4

Major groove platform

285

Motif group IL_49655.1

Basepair signature:
cWW-tWW-L-R-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -369.34 20 17

286

Motif group IL_74271.1

Basepair signature:
cWW-L-L-L-tWH-L-L-L-cWW

0.00 -369.91 9 7

287

Motif group IL_22615.1

Basepair signature:
cWW-tWW-L-tWH-R-R-R-R-cSH-R-R-L-tHH-tHS-cWW

0.00 -380.10 17 16

288

Motif group IL_94592.1

Basepair signature:
cWW-cWW

0.00 -380.69 7 5

Single bulged U

289

Motif group IL_81328.5

Basepair signature:
cWW-R-cWW

0.00 -387.83 6 5

Major groove intercalation

290

Motif group IL_06437.8

Basepair signature:
cWW-tSH-cWW

0.00 -387.87 5 4

Minor groove platform

291

Motif group IL_16160.1

Basepair signature:
cWW-L-R-cWW

0.00 -391.04 8 6

Isolated non-canonical cWW pair

292

Motif group IL_45481.1

Basepair signature:
cWW-L-R-cHW-L-L-tSW-L-cWW

0.00 -391.41 12 11

293

Motif group IL_70995.5

Basepair signature:
cWW-tSH-L-cWW

0.00 -393.02 6 4

Major groove platform; stack outside cWW

294

Motif group IL_20245.1

Basepair signature:
cWW-L-R-R-R-R-L-L-L-L-L-L-L-L-L-L-L-L-cWW-L-R-cWW

0.00 -394.13 17 16

295

Motif group IL_65055.1

Basepair signature:
cWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -394.93 20 17

296

Motif group IL_82426.3

Basepair signature:
cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW

0.00 -403.07 13 10

Part of G-quadruplex

297

Motif group IL_71960.4

Basepair signature:
cWW-cSH-cWW

0.00 -403.78 7 5

Minor groove platform

298

Motif group IL_80663.8

Basepair signature:
cWW-tHS-cSH-cWW

0.00 -404.36 6 4

Major groove platform

299

Motif group IL_80355.1

Basepair signature:
cWW-tWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW

0.00 -409.31 20 17

300

Motif group IL_45944.2

Basepair signature:
cWW-L-L-tWH-L-L-L-cWW

0.00 -425.07 8 7

301

Motif group IL_75560.1

Basepair signature:
cWW-cWW

0.00 -430.73 7 5

Single bulged A

302

Motif group IL_85053.1

Basepair signature:
cWW-cWW

0.00 -432.47 7 5

Single bulged G

303

Motif group IL_99645.1

Basepair signature:
cWW-cWW

0.00 -435.38 8 5

Single bulged G

304

Motif group IL_94878.1

Basepair signature:
cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW

0.00 -453.02 19 19

305

Motif group IL_58960.1

Basepair signature:
cWW-L-L-tWW-L-L-L-cWW

0.00 -477.21 7 6

306

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-tWH-tWH-tSS-L-L-L-bif-cWW-tSS-cSS-R-R-cWW

0.00 -481.03 16 14

Kink-turn related

307

Motif group IL_40508.3

Basepair signature:
cWW-cWW

0.00 -483.42 5 5

Major groove intercalation

308

Motif group IL_96600.1

Basepair signature:
cWW-cWW

0.00 -492.58 8 5

Single bulged U

309

Motif group IL_59137.8

Basepair signature:
cWW-cWW

0.00 -511.26 6 5

Single bulged G

310

Motif group IL_80007.14

Basepair signature:
cWW-cWW

0.00 -518.95 5 5

Single bulged A

311

Motif group IL_31504.1

Basepair signature:
cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW

0.00 -538.21 15 14

312

Motif group IL_67834.1

Basepair signature:
cWW-R-R-R-R-R-R-tWW-R-R-R-R-R-R-R-R-R-R-R-R-cWW

0.00 -547.47 21 19

313

Motif group IL_24106.1

Basepair signature:
cWW-tSH-tWH-tWH-R-R-R-R-R-R-R-cWW

0.00 -550.98 13 12

314

Motif group IL_83121.6

Basepair signature:
cWW-cSS-R-cWW

0.00 -565.00 6 4

315

Motif group IL_89731.1

Basepair signature:
cWW-R-tWH-R-R-R-cWW

0.00 -568.69 8 5

316

Motif group IL_83039.9

Basepair signature:
cWW-cWW

0.00 -571.20 6 5

Single bulged U

317

Motif group IL_61258.7

Basepair signature:
cWW-cWW

0.00 -587.22 6 6

Single bulged C

318

Motif group IL_84409.1

Basepair signature:
cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW

0.00 -4541.37 17 17

319

Motif group IL_60992.4

Basepair signature:
cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW

0.00 -5295.58 11 8

320

Motif group IL_17765.1

Basepair signature:
cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW

0.00 -5332.71 10 8

321

Motif group IL_75283.1

Basepair signature:
cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW

0.00 -5443.70 13 10

322

Motif group IL_35904.1

Basepair signature:
cWW-tSH-tSS-tSS-R-R-R-R-cWW

0.00 -7039.91 7 4

Kink-turn

Coloring options: