2J28 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2J28_001 | 1/8/52:57 | No text annotation Not in a motif group | ||
| HL_2J28_002 | 1/A/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_87939.1 | |
| HL_2J28_003 | 1/A/86:90 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
| HL_2J28_004 | 1/B/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_2J28_005 | 1/B/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_2J28_006 | 1/B/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_2J28_007 | 1/B/137:142 | No text annotation Not in a motif group | ||
| HL_2J28_008 | 1/B/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_2J28_009 | 1/B/194:201 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.2 | |
| HL_2J28_010 | 1/B/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_2J28_011 | 1/B/246:252 | No text annotation Not in a motif group | homologous HL_7A0S_008 HL_67216.7 | |
| HL_2J28_012 | 1/B/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_2J28_013 | 1/B/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_2J28_014 | 1/B/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_2J28_015 | 1/B/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_2J28_016 | 1/B/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_2J28_017 | 1/B/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_2J28_018 | 1/B/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_2J28_019 | 1/B/543:550 | No text annotation Not in a motif group | homologous HL_7RQB_017 NA | |
| HL_2J28_020 | 1/B/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_89380.2 | |
| HL_2J28_021 | 1/B/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_2J28_022 | 1/B/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_2J28_023 | 1/B/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_2J28_024 | 1/B/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_2J28_025 | 1/B/744:753 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_2J28_026 | 1/B/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_2J28_027 | 1/B/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_2J28_029 | 1/B/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_2J28_030 | 1/B/978:985 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_64430.2 | |
| HL_2J28_031 | 1/B/1064:1074 | No text annotation Not in a motif group | homologous HL_6PRV_001 HL_07145.1 | |
| HL_2J28_032 | 1/B/1092:1099 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.2 | |
| HL_2J28_033 | 1/B/1172:1177 | No text annotation Not in a motif group | geometric HL_4WRT_001 HL_27930.1 | |
| HL_2J28_034 | 1/B/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_2J28_035 | 1/B/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_2J28_036 | 1/B/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_2J28_037 | 1/B/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_2J28_038 | 1/B/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_2J28_039 | 1/B/1449:1462 | No text annotation Not in a motif group | ||
| HL_2J28_040 | 1/B/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_2J28_041 | 1/B/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_03562.2 | |
| HL_2J28_042 | 1/B/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_2J28_043 | 1/B/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_2J28_044 | 1/B/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_2J28_045 | 1/B/1691:1696 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_03562.2 | |
| HL_2J28_046 | 1/B/1728:1731 | No text annotation Not in a motif group | ||
| HL_2J28_047 | 1/B/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_2J28_048 | 1/B/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_2J28_049 | 1/B/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_2J28_050 | 1/B/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_42097.1 | |
| HL_2J28_051 | 1/B/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_2J28_052 | 1/B/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_2J28_053 | 1/B/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_2J28_054 | 1/B/2142:2149 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_2J28_055 | 1/B/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_2J28_056 | 1/B/2248:2256 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.2 | |
| HL_2J28_057 | 1/B/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_2J28_058 | 1/B/2303:2313 | No text annotation Not in a motif group | homologous HL_4WF9_051 NA | |
| HL_2J28_059 | 1/B/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_2J28_060 | 1/B/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_2J28_061 | 1/B/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_2J28_062 | 1/B/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_2J28_063 | 1/B/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_2J28_064 | 1/B/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_2J28_065 | 1/B/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_2J28_066 | 1/B/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_2J28_067 | 1/B/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_2J28_068 | 1/B/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_2J28_069 | 1/B/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_2J28_070 | 1/B/2796:2800 | No text annotation Not in a motif group | ||
| HL_2J28_071 | 1/B/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_2J28_072 | 1/B/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2J28_028 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2J28_001 | 1/8/22:23, 1/8/84:87 | No text annotation Not in a motif group | ||
| IL_2J28_002 | 1/8/30:31, 1/8/75:77 | No text annotation Not in a motif group | ||
| IL_2J28_003 | 1/8/38:43, 1/8/66:68 | No text annotation Not in a motif group | ||
| IL_2J28_004 | 1/8/45:50, 1/8/59:64 | No text annotation Not in a motif group | ||
| IL_2J28_005 | 1/A/17:18, 1/A/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.2 | |
| IL_2J28_006 | 1/A/23:29, 1/A/55:60 | No text annotation Not in a motif group | ||
| IL_2J28_007 | 1/A/30:31, 1/A/51:54 | No text annotation Not in a motif group | ||
| IL_2J28_008 | 1/A/34:38, 1/A/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_5J7L_358 IL_58103.6 | |
| IL_2J28_009 | 1/A/71:79, 1/A/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
| IL_2J28_010 | 1/B/24:30, 1/B/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5J7L_245 IL_66414.6 | |
| IL_2J28_011 | 1/B/36:37, 1/B/442:444 | Single bulged A Not in a motif group | homologous IL_5J7L_246 IL_37497.2 | |
| IL_2J28_012 | 1/B/43:44, 1/B/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_2J28_013 | 1/B/81:85, 1/B/97:105 | No text annotation Not in a motif group | ||
| IL_2J28_014 | 1/B/183:184, 1/B/212:214 | Single stack bend Not in a motif group | homologous IL_5J7L_249 IL_76488.2 | |
| IL_2J28_015 | 1/B/188:194, 1/B/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_250 IL_04346.7 | |
| IL_2J28_016 | 1/B/239:245, 1/B/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_2J28_017 | 1/B/269:271, 1/B/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_2J28_018 | 1/B/274:281, 1/B/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_2J28_019 | 1/B/293:295, 1/B/343:347 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.1 | |
| IL_2J28_020 | 1/B/481:484, 1/B/496:509 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.6 | |
| IL_2J28_021 | 1/B/536:539, 1/B/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_2J28_022 | 1/B/564:566, 1/B/575:577 | No text annotation Not in a motif group | homologous IL_4WF9_017 IL_95997.1 | |
| IL_2J28_023 | 1/B/606:610, 1/B/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_2J28_024 | 1/B/672:674, 1/B/806:808 | No text annotation Not in a motif group | geometric IL_5J7L_259 IL_95997.1 | |
| IL_2J28_025 | 1/B/674:678, 1/B/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_5J7L_260 IL_17470.6 | |
| IL_2J28_026 | 1/B/697:698, 1/B/763:765 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.2 | |
| IL_2J28_027 | 1/B/702:703, 1/B/728:730 | Single bulged G Not in a motif group | geometric IL_5J7L_262 IL_00225.2 | |
| IL_2J28_028 | 1/B/703:707, 1/B/724:728 | Triple sheared Not in a motif group | homologous IL_5J7L_263 IL_56467.8 | |
| IL_2J28_029 | 1/B/738:740, 1/B/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_2J28_030 | 1/B/775:777, 1/B/787:791 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_2J28_031 | 1/B/837:838, 1/B/940:942 | Single stack bend Not in a motif group | homologous IL_7A0S_022 IL_92001.1 | |
| IL_2J28_032 | 1/B/844:848, 1/B/930:934 | No text annotation Not in a motif group | ||
| IL_2J28_033 | 1/B/850:851, 1/B/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_2J28_034 | 1/B/856:858, 1/B/919:921 | No text annotation Not in a motif group | geometric IL_5TBW_068 IL_95997.1 | |
| IL_2J28_035 | 1/B/858:862, 1/B/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_4V9F_033 IL_38862.1 | |
| IL_2J28_036 | 1/B/862:863, 1/B/913:915 | Minor groove platform Not in a motif group | geometric IL_3K0J_002 IL_42622.2 | |
| IL_2J28_037 | 1/B/864:868, 1/B/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_2J28_038 | 1/B/870:872, 1/B/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_2J28_039 | 1/B/994:996, 1/B/1159:1160 | Single bulged C Not in a motif group | homologous IL_7A0S_032 IL_61258.12 | |
| IL_2J28_040 | 1/B/998:1002, 1/B/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
| IL_2J28_041 | 1/B/1004:1011, 1/B/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_2J28_042 | 1/B/1011:1013, 1/B/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_2J28_043 | 1/B/1018:1024, 1/B/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_2J28_044 | 1/B/1031:1034, 1/B/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_2J28_045 | 1/B/1038:1041, 1/B/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_2J28_046 | 1/B/1043:1051, 1/B/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.4 | |
| IL_2J28_047 | 1/B/1059:1062, 1/B/1076:1079 | No text annotation Not in a motif group | homologous IL_6PRV_001 IL_23544.2 | |
| IL_2J28_048 | 1/B/1087:1090, 1/B/1101:1102 | Major groove platform Not in a motif group | geometric IL_4V9F_044 IL_27635.1 | |
| IL_2J28_049 | 1/B/1196:1198, 1/B/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_52767.2 | |
| IL_2J28_050 | 1/B/1202:1206, 1/B/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_2J28_051 | 1/B/1208:1215, 1/B/1234:1238 | Kink-turn Not in a motif group | homologous IL_7A0S_043 IL_70923.2 | |
| IL_2J28_052 | 1/B/1262:1269, 1/B/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_2J28_053 | 1/B/1310:1313, 1/B/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_2J28_054 | 1/B/1319:1323, 1/B/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_2J28_055 | 1/B/1351:1355, 1/B/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_2J28_056 | 1/B/1357:1361, 1/B/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_2J28_057 | 1/B/1415:1416, 1/B/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_2J28_058 | 1/B/1417:1421, 1/B/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_2J28_059 | 1/B/1432:1435, 1/B/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_2J28_060 | 1/B/1437:1440, 1/B/1551:1555 | No text annotation Not in a motif group | ||
| IL_2J28_061 | 1/B/1468:1471, 1/B/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_2J28_062 | 1/B/1474:1478, 1/B/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_2J28_063 | 1/B/1481:1482, 1/B/1507:1510 | No text annotation Not in a motif group | ||
| IL_2J28_064 | 1/B/1489:1491, 1/B/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_2J28_065 | 1/B/1526:1529, 1/B/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_2J28_066 | 1/B/1651:1656, 1/B/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_2J28_067 | 1/B/1663:1665, 1/B/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_2J28_068 | 1/B/1666:1669, 1/B/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_2J28_069 | 1/B/1669:1674, 1/B/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_5J7L_307 IL_82842.2 | |
| IL_2J28_070 | 1/B/1686:1691, 1/B/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_65969.2 | |
| IL_2J28_071 | 1/B/1712:1718, 1/B/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_2J28_072 | 1/B/1720:1724, 1/B/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
| IL_2J28_073 | 1/B/1727:1728, 1/B/1731:1733 | Single bulged C Not in a motif group | geometric IL_5J7L_311 IL_61258.12 | |
| IL_2J28_074 | 1/B/1770:1771, 1/B/1980:1982 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_2J28_075 | 1/B/1798:1804, 1/B/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_2J28_076 | 1/B/1837:1840, 1/B/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_2J28_077 | 1/B/1841:1842, 1/B/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_2J28_078 | 1/B/1846:1849, 1/B/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_2J28_079 | 1/B/1864:1867, 1/B/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_2J28_080 | 1/B/1933:1934, 1/B/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_318 IL_59677.2 | |
| IL_2J28_081 | 1/B/1934:1945, 1/B/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_2J28_082 | 1/B/2050:2052, 1/B/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_2J28_083 | 1/B/2054:2056, 1/B/2612:2615 | No text annotation Not in a motif group | ||
| IL_2J28_084 | 1/B/2067:2069, 1/B/2442:2443 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.13 | |
| IL_2J28_085 | 1/B/2070:2071, 1/B/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_2J28_086 | 1/B/2081:2083, 1/B/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_2J28_087 | 1/B/2085:2087, 1/B/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_2J28_088 | 1/B/2103:2105, 1/B/2184:2186 | Stack and bulge Not in a motif group | geometric IL_2ET8_001 IL_82842.2 | |
| IL_2J28_089 | 1/B/2108:2110, 1/B/2179:2181 | No text annotation Not in a motif group | ||
| IL_2J28_090 | 1/B/2202:2204, 1/B/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_2J28_091 | 1/B/2350:2353, 1/B/2364:2367 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_2J28_092 | 1/B/2401:2403, 1/B/2414:2415 | No text annotation Not in a motif group | ||
| IL_2J28_093 | 1/B/2453:2454, 1/B/2498:2500 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_2J28_094 | 1/B/2454:2455, 1/B/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_2J28_095 | 1/B/2457:2459, 1/B/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_2J28_096 | 1/B/2459:2461, 1/B/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_337 IL_92788.2 | |
| IL_2J28_097 | 1/B/2466:2470, 1/B/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_2J28_098 | 1/B/2507:2508, 1/B/2580:2582 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_2J28_099 | 1/B/2510:2512, 1/B/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_340 IL_90933.2 | |
| IL_2J28_100 | 1/B/2512:2513, 1/B/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_2J28_101 | 1/B/2522:2523, 1/B/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_2J28_102 | 1/B/2591:2592, 1/B/2601:2603 | Single bulged A Not in a motif group | homologous IL_5J7L_344 IL_37497.2 | |
| IL_2J28_103 | 1/B/2636:2640, 1/B/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
| IL_2J28_104 | 1/B/2652:2658, 1/B/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_5J7L_346 IL_16458.1 | |
| IL_2J28_105 | 1/B/2680:2684, 1/B/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_2J28_106 | 1/B/2687:2691, 1/B/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_2J28_107 | 1/B/2695:2696, 1/B/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_2J28_108 | 1/B/2737:2742, 1/B/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_2J28_109 | 1/B/2806:2811, 1/B/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_2J28_110 | 1/B/2838:2839, 1/B/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_4WF9_106 IL_16396.2 | |
| IL_2J28_111 | 1/B/2843:2846, 1/B/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_2J28_112 | 1/B/2847:2852, 1/B/2865:2869 | No text annotation Not in a motif group | homologous IL_7A0S_101 IL_83162.5 | |
| IL_2J28_113 | 1/B/1024:1030, 1/B/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_2J28_001 | 1/A/10:16, 1/A/68:70, 1/A/106:110 | No text annotation Not in a motif group | ||
| J3_2J28_002 | 1/B/683:689, 1/B/773:775, 1/B/791:794 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_2J28_003 | 1/B/698:700, 1/B/732:736, 1/B/760:763 | No text annotation Not in a motif group | ||
| J3_2J28_004 | 1/B/1055:1057, 1/B/1081:1087, 1/B/1102:1104 | No text annotation Not in a motif group | homologous J3_6PRV_001 NA | |
| J3_2J28_005 | 1/B/1298:1303, 1/B/1625:1627, 1/B/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_2J28_006 | 1/B/1306:1309, 1/B/1605:1611, 1/B/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_2J28_007 | 1/B/2091:2093, 1/B/2196:2200, 1/B/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_2J28_008 | 1/B/2295:2299, 1/B/2317:2323, 1/B/2332:2337 | No text annotation Not in a motif group | ||
| J3_2J28_009 | 1/B/2517:2520, 1/B/2545:2547, 1/B/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_2J28_010 | 1/B/2812:2815, 1/B/2831:2836, 1/B/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_2J28_011 | 1/B/30:31, 1/B/474:481, 1/B/509:510 | No text annotation Not in a motif group | ||
| J3_2J28_012 | 1/B/56:57, 1/B/70:76, 1/B/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_2J28_013 | 1/B/2789:2791, 1/B/2805:2806, 1/B/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA |
Problematic loops
No problematic loops
Coloring options: