7UQB Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7UQB_001 | 1/1/39:44 | No text annotation Not in a motif group | ||
| HL_7UQB_002 | 1/1/69:74 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_7UQB_003 | 1/1/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_7UQB_004 | 1/1/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_98426.1 | |
| HL_7UQB_005 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_7UQB_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_7UQB_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_7UQB_008 | 1/1/280:285 | GNRA Not in a motif group | geometric HL_5VW1_001 HL_42097.1 | |
| HL_7UQB_009 | 1/1/303:312 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_12078.2 | |
| HL_7UQB_010 | 1/1/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_7UQB_011 | 1/1/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_7UQB_012 | 1/1/540:551 | No text annotation Not in a motif group | ||
| HL_7UQB_013 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_7UQB_014 | 1/1/638:651 | No text annotation Not in a motif group | ||
| HL_7UQB_015 | 1/1/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_7UQB_016 | 1/1/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_7UQB_017 | 1/1/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_7UQB_018 | 1/1/763:768 | No text annotation Not in a motif group | homologous HL_8C3A_018 HL_34168.2 | |
| HL_7UQB_019 | 1/1/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_7UQB_020 | 1/1/875:886 | No text annotation Not in a motif group | ||
| HL_7UQB_021 | 1/1/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_7UQB_022 | 1/1/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_7UQB_023 | 1/1/991:1058 | No text annotation Not in a motif group | ||
| HL_7UQB_024 | 1/1/1073:1085 | No text annotation Not in a motif group | ||
| HL_7UQB_025 | 1/1/1126:1132 | Other HL Not in a motif group | geometric HL_4V9F_039 HL_27930.1 | |
| HL_7UQB_026 | 1/1/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_7UQB_027 | 1/1/1239:1249 | No text annotation Not in a motif group | homologous HL_8C3A_027 HL_07145.1 | |
| HL_7UQB_028 | 1/1/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_7UQB_029 | 1/1/1347:1357 | No text annotation Not in a motif group | geometric HL_4OOG_001 HL_65572.2 | |
| HL_7UQB_030 | 1/1/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_7UQB_031 | 1/1/1462:1470 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_7UQB_032 | 1/1/1506:1512 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_7UQB_033 | 1/1/1544:1549 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_7UQB_034 | 1/1/1565:1574 | No text annotation Not in a motif group | ||
| HL_7UQB_035 | 1/1/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_7UQB_036 | 1/1/1634:1639 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.1 | |
| HL_7UQB_037 | 1/1/1680:1688 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_60812.1 | |
| HL_7UQB_038 | 1/1/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_7UQB_039 | 1/1/1759:1766 | No text annotation Not in a motif group | ||
| HL_7UQB_040 | 1/1/1792:1796 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_7UQB_041 | 1/1/1844:1851 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_7UQB_042 | 1/1/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_7UQB_043 | 1/1/1923:1928 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_7UQB_044 | 1/1/1952:2094 | No text annotation Not in a motif group | ||
| HL_7UQB_045 | 1/1/2110:2114 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_7UQB_046 | 1/1/2135:2145 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.5 | |
| HL_7UQB_047 | 1/1/2164:2170 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_7UQB_048 | 1/1/2219:2226 | No text annotation Not in a motif group | geometric HL_4WF9_041 HL_49288.1 | |
| HL_7UQB_049 | 1/1/2369:2378 | No text annotation Not in a motif group | geometric HL_4FRN_007 HL_08002.8 | |
| HL_7UQB_050 | 1/1/2443:2504 | No text annotation Not in a motif group | ||
| HL_7UQB_051 | 1/1/2568:2573 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_7UQB_052 | 1/1/2673:2681 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_7UQB_053 | 1/1/2693:2700 | No text annotation Not in a motif group | ||
| HL_7UQB_054 | 1/1/2726:2732 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_7UQB_055 | 1/1/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_7UQB_056 | 1/1/2776:2784 | No text annotation Not in a motif group | homologous HL_5TBW_060 HL_96598.1 | |
| HL_7UQB_057 | 1/1/2840:2848 | No text annotation Not in a motif group | geometric HL_5J7L_151 HL_90617.2 | |
| HL_7UQB_058 | 1/1/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_7UQB_059 | 1/1/2920:2926 | No text annotation Not in a motif group | geometric HL_4TUW_002 HL_65572.2 | |
| HL_7UQB_060 | 1/1/2963:2968 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_42097.1 | |
| HL_7UQB_061 | 1/1/3025:3030 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_42097.1 | |
| HL_7UQB_062 | 1/1/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_7UQB_063 | 1/1/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_7UQB_064 | 1/1/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_7UQB_065 | 1/1/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_7UQB_066 | 1/1/3303:3311 | No text annotation Not in a motif group | homologous HL_8C3A_071 HL_27930.1 | |
| HL_7UQB_067 | 1/2/69:89 | No text annotation Not in a motif group | ||
| HL_7UQB_068 | 1/2/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_7UQB_069 | 1/2/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_7UQB_070 | 1/3/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_87939.1 | |
| HL_7UQB_071 | 1/3/88:93 | No text annotation Not in a motif group | geometric HL_7RQB_011 HL_75407.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7UQB_001 | 1/1/7:8, 1/2/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_7UQB_002 | 1/1/13:15, 1/2/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_7UQB_003 | 1/1/27:28, 1/1/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_7UQB_004 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS Not in a motif group | homologous IL_5TBW_005 IL_35728.2 | |
| IL_7UQB_005 | 1/1/82:89, 1/1/97:103 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_7UQB_006 | 1/1/123:124, 1/1/144:149 | No text annotation Not in a motif group | homologous IL_8C3A_007 IL_19724.2 | |
| IL_7UQB_007 | 1/1/125:127, 1/1/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_7UQB_008 | 1/1/163:165, 1/1/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_7UQB_009 | 1/1/169:171, 1/1/247:253 | No text annotation Not in a motif group | ||
| IL_7UQB_010 | 1/1/177:178, 1/1/238:241 | Minor groove platform Not in a motif group | geometric IL_4KQY_004 IL_95601.3 | |
| IL_7UQB_011 | 1/1/189:191, 1/1/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_7UQB_012 | 1/1/278:280, 1/1/285:287 | No text annotation Not in a motif group | geometric IL_5TBW_034 IL_95997.1 | |
| IL_7UQB_013 | 1/1/337:339, 1/2/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_7UQB_014 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | geometric IL_5TBW_014 IL_60992.6 | |
| IL_7UQB_015 | 1/1/404:410, 1/2/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_7UQB_016 | 1/1/429:431, 1/1/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_7UQB_017 | 1/1/435:495, 1/1/618:624 | No text annotation Not in a motif group | homologous IL_5TBW_017 IL_33557.1 | |
| IL_7UQB_018 | 1/1/512:513, 1/1/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_7UQB_019 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_7UQB_020 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_7UQB_021 | 1/1/668:670, 1/1/792:794 | No text annotation Not in a motif group | homologous IL_5TBW_021 IL_95997.1 | |
| IL_7UQB_022 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_7UQB_023 | 1/1/725:728, 1/1/741:745 | No text annotation Not in a motif group | homologous IL_8C3A_025 IL_07235.1 | |
| IL_7UQB_024 | 1/1/752:753, 1/1/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.2 | |
| IL_7UQB_025 | 1/1/758:763, 1/1/768:773 | No text annotation Not in a motif group | homologous IL_8C3A_028 IL_19954.2 | |
| IL_7UQB_026 | 1/1/803:809, 1/1/931:940 | No text annotation Not in a motif group | ||
| IL_7UQB_027 | 1/1/826:828, 1/1/897:899 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_7UQB_028 | 1/1/828:829, 1/1/895:897 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.2 | |
| IL_7UQB_029 | 1/1/833:834, 1/1/859:861 | No text annotation Not in a motif group | homologous IL_8C3A_032 IL_00225.2 | |
| IL_7UQB_030 | 1/1/834:838, 1/1/855:859 | Triple sheared Not in a motif group | geometric IL_5J7L_263 IL_56467.8 | |
| IL_7UQB_031 | 1/1/869:872, 1/1/888:890 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_05564.2 | |
| IL_7UQB_032 | 1/1/873:875, 1/1/886:887 | Single bulged U Not in a motif group | geometric IL_3D2V_001 IL_83039.13 | |
| IL_7UQB_033 | 1/1/907:909, 1/1/919:923 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.6 | |
| IL_7UQB_034 | 1/1/969:972, 1/1/1109:1113 | No text annotation Not in a motif group | ||
| IL_7UQB_035 | 1/1/977:982, 1/1/1101:1104 | No text annotation Not in a motif group | ||
| IL_7UQB_036 | 1/1/983:985, 1/1/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_7UQB_037 | 1/1/989:991, 1/1/1058:1060 | No text annotation Not in a motif group | geometric IL_1NBS_006 IL_95997.1 | |
| IL_7UQB_038 | 1/1/1069:1072, 1/1/1086:1089 | No text annotation Not in a motif group | ||
| IL_7UQB_039 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_7UQB_040 | 1/1/1167:1171, 1/1/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_7UQB_041 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5TBW_049 IL_15861.7 | |
| IL_7UQB_042 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U Not in a motif group | homologous IL_5TBW_050 IL_83039.13 | |
| IL_7UQB_043 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation Not in a motif group | homologous IL_5TBW_051 IL_27086.1 | |
| IL_7UQB_044 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation Not in a motif group | ||
| IL_7UQB_045 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_7UQB_046 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn Not in a motif group | homologous IL_5TBW_054 IL_90538.4 | |
| IL_7UQB_047 | 1/1/1234:1238, 1/1/1250:1254 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_7UQB_048 | 1/1/1262:1266, 1/1/1275:1277 | No text annotation Not in a motif group | homologous IL_8C3A_059 IL_05564.2 | |
| IL_7UQB_049 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_7UQB_050 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_7UQB_051 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_7UQB_052 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A Not in a motif group | geometric IL_5WWT_001 IL_37497.2 | |
| IL_7UQB_053 | 1/1/1444:1451, 1/1/2353:2359 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge Not in a motif group | geometric IL_4V9F_012 IL_59724.1 | |
| IL_7UQB_054 | 1/1/1492:1495, 1/1/1835:1836 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_050 IL_50694.2 | |
| IL_7UQB_055 | 1/1/1500:1505, 1/1/1513:1516 | No text annotation Not in a motif group | homologous IL_5TBW_062 IL_93630.2 | |
| IL_7UQB_056 | 1/1/1532:1536, 1/1/1585:1590 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_89002.2 | |
| IL_7UQB_057 | 1/1/1618:1621, 1/1/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_7UQB_058 | 1/1/1623:1624, 1/1/1819:1822 | Multiple bulged bases Not in a motif group | geometric IL_4YAZ_007 IL_76389.1 | |
| IL_7UQB_059 | 1/1/1627:1631, 1/1/1811:1816 | No text annotation Not in a motif group | homologous IL_5TBW_066 IL_48431.1 | |
| IL_7UQB_060 | 1/1/1645:1649, 1/1/1806:1810 | Triple sheared Not in a motif group | geometric IL_7RQB_075 IL_56467.8 | |
| IL_7UQB_061 | 1/1/1661:1663, 1/1/1786:1788 | No text annotation Not in a motif group | homologous IL_8C3A_074 IL_95997.1 | |
| IL_7UQB_062 | 1/1/1669:1670, 1/1/1778:1780 | No text annotation Not in a motif group | homologous IL_8C3A_075 IL_61258.12 | |
| IL_7UQB_063 | 1/1/1670:1671, 1/1/1776:1778 | No text annotation Not in a motif group | homologous IL_8C3A_076 IL_76488.2 | |
| IL_7UQB_064 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation Not in a motif group | homologous IL_8C3A_077 IL_69313.1 | |
| IL_7UQB_065 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation Not in a motif group | homologous IL_5TBW_072 IL_39753.1 | |
| IL_7UQB_066 | 1/1/1711:1717, 1/1/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_7UQB_067 | 1/1/1880:1882, 1/1/2350:2352 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_7UQB_068 | 1/1/1882:1889, 1/1/2346:2350 | No text annotation Not in a motif group | ||
| IL_7UQB_069 | 1/1/1894:1897, 1/1/2338:2341 | No text annotation Not in a motif group | ||
| IL_7UQB_070 | 1/1/1897:1901, 1/1/2336:2338 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_7UQB_071 | 1/1/1901:1906, 1/1/2333:2336 | Intercalated tWH Not in a motif group | homologous IL_5TBW_077 IL_82842.2 | |
| IL_7UQB_072 | 1/1/1918:1923, 1/1/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_7UQB_073 | 1/1/1940:1942, 1/1/2106:2108 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_7UQB_074 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_7UQB_075 | 1/1/2128:2130, 1/1/2322:2325 | Intercalated cWW Not in a motif group | geometric IL_7A0S_044 IL_82842.2 | |
| IL_7UQB_076 | 1/1/2156:2161, 1/1/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_7UQB_077 | 1/1/2196:2199, 1/1/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.1 | |
| IL_7UQB_078 | 1/1/2200:2202, 1/1/2240:2244 | Major groove platform with extra pair Not in a motif group | geometric IL_5TBW_091 IL_63450.2 | |
| IL_7UQB_079 | 1/1/2204:2210, 1/1/2235:2238 | No text annotation Not in a motif group | ||
| IL_7UQB_080 | 1/1/2211:2217, 1/1/2228:2234 | No text annotation Not in a motif group | homologous IL_8C3A_093 IL_36973.6 | |
| IL_7UQB_081 | 1/1/2249:2251, 1/1/2265:2267 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_7UQB_082 | 1/1/2251:2253, 1/1/2263:2265 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_7UQB_083 | 1/1/2391:2394, 1/1/2986:2988 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_7UQB_084 | 1/1/2396:2398, 1/1/2981:2984 | Major groove platform Not in a motif group | geometric IL_4WF9_078 IL_27635.1 | |
| IL_7UQB_085 | 1/1/2405:2407, 1/1/2814:2816 | No text annotation Not in a motif group | geometric IL_5MWI_006 IL_95997.1 | |
| IL_7UQB_086 | 1/1/2410:2411, 1/1/2808:2811 | Multiple bulged bases Not in a motif group | geometric IL_6JXM_001 IL_69996.1 | |
| IL_7UQB_087 | 1/1/2413:2415, 1/1/2805:2806 | Single bulged G Not in a motif group | geometric IL_5J7L_040 IL_00225.2 | |
| IL_7UQB_088 | 1/1/2420:2422, 1/1/2608:2610 | Stack and bulge Not in a motif group | geometric IL_2O3X_001 IL_82842.2 | |
| IL_7UQB_089 | 1/1/2423:2425, 1/1/2604:2607 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_7UQB_090 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_7UQB_091 | 1/1/2624:2628, 1/1/2650:2654 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_7UQB_092 | 1/1/2666:2668, 1/1/2686:2690 | No text annotation Not in a motif group | homologous IL_8C3A_108 IL_38958.7 | |
| IL_7UQB_093 | 1/1/2720:2722, 1/1/2736:2737 | Single bulged A Not in a motif group | geometric IL_4V9F_098 IL_37497.2 | |
| IL_7UQB_094 | 1/1/2741:2742, 1/1/2751:2753 | Single stack bend Not in a motif group | geometric IL_5J7L_269 IL_76488.2 | |
| IL_7UQB_095 | 1/1/2770:2773, 1/1/2787:2788 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_7UQB_096 | 1/1/2835:2839, 1/1/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_7UQB_097 | 1/1/2877:2879, 1/1/2947:2949 | No text annotation Not in a motif group | geometric IL_353D_001 IL_95997.1 | |
| IL_7UQB_098 | 1/1/2879:2882, 1/1/2940:2947 | No text annotation Not in a motif group | ||
| IL_7UQB_099 | 1/1/2889:2891, 1/1/2912:2914 | No text annotation Not in a motif group | homologous IL_8C3A_118 IL_51629.2 | |
| IL_7UQB_100 | 1/1/2891:2892, 1/1/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_4V9F_089 IL_95601.3 | |
| IL_7UQB_101 | 1/1/2918:2920, 1/1/2926:2928 | No text annotation Not in a motif group | geometric IL_5Y7M_007 IL_95997.1 | |
| IL_7UQB_102 | 1/1/2958:2960, 1/1/2972:2974 | No text annotation Not in a motif group | homologous IL_8C3A_121 IL_95997.1 | |
| IL_7UQB_103 | 1/1/2960:2961, 1/1/2970:2972 | Minor groove platform Not in a motif group | geometric IL_7A0S_028 IL_42622.2 | |
| IL_7UQB_104 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_7UQB_105 | 1/1/3012:3014, 1/1/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_7UQB_106 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_7UQB_107 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_7UQB_108 | 1/1/3054:3059, 1/1/3084:3088 | No text annotation Not in a motif group | homologous IL_8C3A_127 IL_17136.1 | |
| IL_7UQB_109 | 1/1/3063:3064, 1/1/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_7UQB_110 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_89002.2 | |
| IL_7UQB_111 | 1/1/3159:3161, 1/1/3290:3291 | Single stack bend Not in a motif group | geometric IL_5J7L_249 IL_76488.2 | |
| IL_7UQB_112 | 1/1/3161:3162, 1/1/3288:3290 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_7UQB_113 | 1/1/3164:3167, 1/1/3282:3286 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_085 IL_67743.1 | |
| IL_7UQB_114 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | homologous IL_5TBW_123 IL_37497.2 | |
| IL_7UQB_115 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_7UQB_116 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_7UQB_117 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_7UQB_118 | 1/1/3233:3235, 1/1/3252:3254 | No text annotation Not in a motif group | homologous IL_5TBW_127 IL_95997.1 | |
| IL_7UQB_119 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4UYK_003 IL_30621.2 | |
| IL_7UQB_120 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_7UQB_121 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U Not in a motif group | geometric IL_5TBW_130 IL_83039.13 | |
| IL_7UQB_122 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_7UQB_123 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_7UQB_124 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation Not in a motif group | homologous IL_5TBW_133 IL_83162.5 | |
| IL_7UQB_125 | 1/1/3340:3342, 1/1/3363:3364 | No text annotation Not in a motif group | ||
| IL_7UQB_126 | 1/1/3342:3345, 1/1/3360:3363 | Double sheared Not in a motif group | geometric IL_4V9F_100 IL_09705.9 | |
| IL_7UQB_127 | 1/2/44:64, 1/2/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_7UQB_128 | 1/2/64:66, 1/2/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_7UQB_129 | 1/2/68:69, 1/2/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_7UQB_130 | 1/3/15:16, 1/3/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_7UQB_131 | 1/3/21:27, 1/3/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_7UQB_132 | 1/3/28:29, 1/3/49:52 | Minor groove platform Not in a motif group | homologous IL_5TBW_374 IL_63797.2 | |
| IL_7UQB_133 | 1/3/29:30, 1/3/47:49 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_7UQB_134 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.6 | |
| IL_7UQB_135 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_7UQB_136 | 1/3/84:87, 1/3/94:96 | No text annotation Not in a motif group | homologous IL_8C3A_149 IL_95997.1 | |
| IL_7UQB_137 | 1/6/26:27, 1/6/51:54 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_7UQB_138 | 1/6/30:34, 1/6/45:48 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7UQB_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation Not in a motif group | ||
| J3_7UQB_002 | 1/1/369:376, 1/1/403:404, 1/2/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_7UQB_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_7UQB_004 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_7UQB_005 | 1/1/829:831, 1/1/863:868, 1/1/891:895 | No text annotation Not in a motif group | ||
| J3_7UQB_006 | 1/1/1230:1232, 1/1/1256:1262, 1/1/1277:1279 | No text annotation Not in a motif group | homologous J3_8C3A_005 NA | |
| J3_7UQB_007 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation Not in a motif group | homologous J3_8C3A_006 NA | |
| J3_7UQB_008 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_7UQB_009 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_7UQB_010 | 1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1811 | No text annotation Not in a motif group | ||
| J3_7UQB_011 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation Not in a motif group | homologous J3_8C3A_008 NA | |
| J3_7UQB_012 | 1/1/2529:2533, 1/1/2546:2563, 1/1/2578:2581 | No text annotation Not in a motif group | ||
| J3_7UQB_013 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation Not in a motif group | homologous J3_8C3A_010 NA | |
| J3_7UQB_014 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_7UQB_015 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation Not in a motif group | ||
| J3_7UQB_016 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA |
Problematic loops
No problematic loops
Coloring options: