3J81 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3J81_001 | 1/2/7:17 | No text annotation Not in a motif group | homologous HL_8C3A_192 HL_89881.2 | |
| HL_3J81_002 | 1/2/70:81 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_75407.1 | |
| HL_3J81_003 | 1/2/151:161 | No text annotation Not in a motif group | ||
| HL_3J81_004 | 1/2/189:194 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_77805.2 | |
| HL_3J81_005 | 1/2/229:234 | UNCG Not in a motif group | geometric HL_5J7L_030 HL_03562.2 | |
| HL_3J81_006 | 1/2/242:249 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_3J81_007 | 1/2/275:278 | No text annotation Not in a motif group | homologous HL_4V88_192 HL_53837.1 | |
| HL_3J81_008 | 1/2/329:337 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_3J81_009 | 1/2/367:372 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_3J81_010 | 1/2/392:403 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_3J81_011 | 1/2/413:418 | No text annotation Not in a motif group | ||
| HL_3J81_012 | 1/2/449:455 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_3J81_013 | 1/2/490:495 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_94803.1 | |
| HL_3J81_014 | 1/2/519:531 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_3J81_015 | 1/2/568:573 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_3J81_016 | 1/2/715:724 | No text annotation Not in a motif group | ||
| HL_3J81_017 | 1/2/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_3J81_018 | 1/2/777:782 | No text annotation Not in a motif group | ||
| HL_3J81_019 | 1/2/828:842 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_3J81_020 | 1/2/898:909 | No text annotation Not in a motif group | ||
| HL_3J81_021 | 1/2/936:941 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_3J81_022 | 1/2/996:1006 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_3J81_023 | 1/2/1055:1063 | No text annotation Not in a motif group | ||
| HL_3J81_024 | 1/2/1083:1088 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_3J81_025 | 1/2/1120:1125 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_3J81_026 | 1/2/1187:1196 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_3J81_027 | 1/2/1222:1259 | No text annotation Not in a motif group | ||
| HL_3J81_028 | 1/2/1295:1300 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_3J81_029 | 1/2/1308:1315 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_3J81_030 | 1/2/1358:1363 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_3J81_031 | 1/2/1393:1402 | No text annotation Not in a motif group | ||
| HL_3J81_032 | 1/2/1499:1504 | Other HL Not in a motif group | geometric HL_2CZJ_007 HL_53845.1 | |
| HL_3J81_033 | 1/2/1547:1560 | No text annotation Not in a motif group | ||
| HL_3J81_034 | 1/2/1592:1600 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_3J81_036 | 1/2/1776:1781 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_3J81_037 | 1/1/13:22 | No text annotation Not in a motif group | geometric HL_2Y9H_004 HL_52841.1 | |
| HL_3J81_038 | 1/1/31:39 | tRNA anticodon loop Not in a motif group | geometric HL_4TUE_034 HL_53597.2 | |
| HL_3J81_039 | 1/1/53:61 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J81_035 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3J81_002 | 1/2/24:26, 1/2/599:600 | No text annotation Not in a motif group | homologous IL_8C3A_392 IL_61258.12 | |
| IL_3J81_003 | 1/2/35:41, 1/2/465:472 | No text annotation Not in a motif group | ||
| IL_3J81_004 | 1/2/42:48, 1/2/430:432 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_3J81_005 | 1/2/50:53, 1/2/426:428 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_3J81_006 | 1/2/58:63, 1/2/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_3J81_007 | 1/2/64:70, 1/2/81:86 | Triple sheared related Not in a motif group | geometric IL_5J7L_063 IL_64879.2 | |
| IL_3J81_008 | 1/2/109:112, 1/2/301:304 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_3J81_009 | 1/2/113:117, 1/2/298:300 | Multiple bulged bases, near cWW Not in a motif group | geometric IL_5M0H_002 IL_51629.2 | |
| IL_3J81_010 | 1/2/117:122, 1/2/294:298 | No text annotation Not in a motif group | geometric IL_4V88_393 IL_64181.2 | |
| IL_3J81_011 | 1/2/143:145, 1/2/170:171 | No text annotation Not in a motif group | ||
| IL_3J81_012 | 1/2/145:149, 1/2/163:170 | No text annotation Not in a motif group | ||
| IL_3J81_013 | 1/2/149:151, 1/2/161:163 | No text annotation Not in a motif group | geometric IL_4AOB_005 IL_95997.1 | |
| IL_3J81_014 | 1/2/185:188, 1/2/195:198 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_3J81_015 | 1/2/203:205, 1/2/258:262 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.2 | |
| IL_3J81_016 | 1/2/205:207, 1/2/256:258 | No text annotation Not in a motif group | homologous IL_4V88_398 IL_95997.1 | |
| IL_3J81_017 | 1/2/264:266, 1/2/287:288 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_3J81_018 | 1/2/267:272, 1/2/282:286 | No text annotation Not in a motif group | ||
| IL_3J81_019 | 1/2/274:275, 1/2/278:280 | No text annotation Not in a motif group | homologous IL_8C3A_409 IL_83039.13 | |
| IL_3J81_020 | 1/2/310:315, 1/2/347:354 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_3J81_021 | 1/2/316:322, 1/2/344:346 | No text annotation Not in a motif group | ||
| IL_3J81_022 | 1/2/362:364, 1/2/375:380 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_3J81_023 | 1/2/388:390, 1/2/405:407 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_3J81_024 | 1/2/410:412, 1/2/419:421 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_3J81_025 | 1/2/438:440, 1/2/462:463 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_3J81_026 | 1/2/442:446, 1/2/459:460 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_3J81_027 | 1/2/446:447, 1/2/457:459 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_3J81_029 | 1/2/486:489, 1/2/496:499 | No text annotation Not in a motif group | ||
| IL_3J81_031 | 1/2/549:556, 1/2/586:587 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_3J81_032 | 1/2/556:558, 1/2/585:586 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_3J81_033 | 1/2/561:567, 1/2/574:582 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_3J81_034 | 1/2/615:621, 1/2/1103:1104 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_3J81_035 | 1/2/623:625, 1/2/972:974 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_3J81_036 | 1/2/626:630, 1/2/967:971 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_3J81_037 | 1/2/650:657, 1/2/676:683 | No text annotation Not in a motif group | ||
| IL_3J81_038 | 1/2/746:747, 1/2/801:804 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_3J81_039 | 1/2/748:750, 1/2/798:800 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_3J81_040 | 1/2/751:760, 1/2/789:797 | No text annotation Not in a motif group | ||
| IL_3J81_041 | 1/2/816:821, 1/2/849:853 | No text annotation Not in a motif group | ||
| IL_3J81_043 | 1/2/823:826, 1/2/844:847 | No text annotation Not in a motif group | ||
| IL_3J81_044 | 1/2/866:869, 1/2/956:960 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.2 | |
| IL_3J81_045 | 1/2/870:873, 1/2/952:955 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_3J81_046 | 1/2/873:877, 1/2/949:952 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_3J81_047 | 1/2/884:887, 1/2/923:926 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_3J81_048 | 1/2/892:894, 1/2/916:918 | UU cWW Not in a motif group | geometric IL_4E48_006 IL_95997.1 | |
| IL_3J81_049 | 1/2/894:898, 1/2/909:916 | Kink-turn Not in a motif group | geometric IL_4V88_434 IL_45067.2 | |
| IL_3J81_050 | 1/2/983:993, 1/2/1009:1016 | No text annotation Not in a motif group | ||
| IL_3J81_051 | 1/2/994:996, 1/2/1006:1008 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_3J81_052 | 1/2/1033:1035, 1/2/1094:1100 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_3J81_053 | 1/2/1040:1043, 1/2/1073:1076 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_3J81_054 | 1/2/1045:1047, 1/2/1069:1071 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_3J81_055 | 1/2/1050:1052, 1/2/1065:1066 | Single bulged U Not in a motif group | geometric IL_5TBW_093 IL_83039.13 | |
| IL_3J81_056 | 1/2/1052:1054, 1/2/1064:1065 | Single stack bend Not in a motif group | geometric IL_4V9F_005 IL_76488.2 | |
| IL_3J81_057 | 1/2/1110:1117, 1/2/1128:1133 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_3J81_058 | 1/2/1145:1146, 1/2/1628:1630 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_3J81_059 | 1/2/1148:1150, 1/2/1625:1626 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_3J81_061 | 1/2/1156:1159, 1/2/1615:1619 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_3J81_062 | 1/2/1172:1174, 1/2/1462:1464 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_3J81_063 | 1/2/1177:1178, 1/2/1457:1459 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_3J81_064 | 1/2/1212:1214, 1/2/1446:1448 | No text annotation Not in a motif group | homologous IL_4V88_446 IL_95997.1 | |
| IL_3J81_065 | 1/2/1267:1269, 1/2/1438:1439 | Single bulged U Not in a motif group | geometric IL_3MEI_001 IL_83039.13 | |
| IL_3J81_066 | 1/2/1270:1275, 1/2/1434:1437 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_3J81_067 | 1/2/1275:1278, 1/2/1427:1434 | No text annotation Not in a motif group | homologous IL_8C3A_457 IL_58764.3 | |
| IL_3J81_068 | 1/2/1279:1280, 1/2/1424:1426 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_3J81_069 | 1/2/1289:1291, 1/2/1322:1324 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_3J81_070 | 1/2/1305:1307, 1/2/1316:1317 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_3J81_071 | 1/2/1338:1341, 1/2/1381:1383 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_3J81_072 | 1/2/1344:1349, 1/2/1373:1378 | No text annotation Not in a motif group | ||
| IL_3J81_073 | 1/2/1350:1354, 1/2/1367:1372 | No text annotation Not in a motif group | geometric IL_4V88_422 IL_05145.2 | |
| IL_3J81_074 | 1/2/1354:1356, 1/2/1365:1367 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_3J81_075 | 1/2/1387:1389, 1/2/1405:1410 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_458 IL_58032.1 | |
| IL_3J81_076 | 1/2/1390:1393, 1/2/1402:1404 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_3J81_077 | 1/2/1486:1492, 1/2/1511:1516 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_3J81_078 | 1/2/1493:1497, 1/2/1506:1510 | No text annotation Not in a motif group | ||
| IL_3J81_079 | 1/2/1497:1499, 1/2/1504:1506 | No text annotation Not in a motif group | geometric IL_4AOB_005 IL_95997.1 | |
| IL_3J81_080 | 1/2/1538:1543, 1/2/1564:1569 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.2 | |
| IL_3J81_081 | 1/2/1585:1587, 1/2/1605:1607 | No text annotation Not in a motif group | geometric IL_4V9F_023 IL_95997.1 | |
| IL_3J81_082 | 1/2/1634:1636, 1/2/1762:1765 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_3J81_083 | 1/2/1636:1639, 1/2/1758:1762 | No text annotation Not in a motif group | homologous IL_4V88_464 IL_99670.1 | |
| IL_3J81_084 | 1/2/1640:1642, 1/2/1755:1757 | UU cWW Not in a motif group | geometric IL_1UN6_005 IL_95997.1 | |
| IL_3J81_085 | 1/2/1642:1646, 1/2/1750:1755 | No text annotation Not in a motif group | ||
| IL_3J81_086 | 1/2/1648:1650, 1/2/1746:1748 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_3J81_087 | 1/2/1651:1660, 1/2/1737:1745 | No text annotation Not in a motif group | ||
| IL_3J81_088 | 1/2/1660:1666, 1/2/1731:1737 | No text annotation Not in a motif group | ||
| IL_3J81_089 | 1/2/1667:1670, 1/2/1727:1730 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_3J81_090 | 1/2/1673:1676, 1/2/1721:1724 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_473 IL_30621.2 | |
| IL_3J81_091 | 1/2/1676:1680, 1/2/1717:1721 | Triple sheared Not in a motif group | geometric IL_4V88_474 IL_56467.8 | |
| IL_3J81_092 | 1/2/1681:1683, 1/2/1714:1716 | No text annotation Not in a motif group | homologous IL_4V88_475 IL_95997.1 | |
| IL_3J81_093 | 1/2/1685:1688, 1/2/1709:1712 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J81_001 | No text annotation | ||
| IL_3J81_028 | Isolated cWH basepair | ||
| IL_3J81_030 | No text annotation | ||
| IL_3J81_042 | No text annotation | ||
| IL_3J81_060 | UG cWW | ||
| IL_3J81_094 | Tandem non-canonical cWW pairs | ||
| IL_3J81_095 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3J81_001 | 1/2/632:634, 1/2/860:865, 1/2/961:965 | No text annotation Not in a motif group | homologous J3_8C3A_034 NA | |
| J3_3J81_002 | 1/2/879:883, 1/2/927:935, 1/2/942:947 | No text annotation Not in a motif group | ||
| J3_3J81_003 | 1/2/1036:1038, 1/2/1078:1082, 1/2/1089:1093 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_3J81_004 | 1/2/1160:1163, 1/2/1579:1585, 1/2/1607:1614 | No text annotation Not in a motif group | ||
| J3_3J81_005 | 1/2/1167:1170, 1/2/1466:1468, 1/2/1572:1575 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_3J81_006 | 1/2/1179:1186, 1/2/1197:1208, 1/2/1452:1456 | No text annotation Not in a motif group | ||
| J3_3J81_007 | 1/2/1214:1219, 1/2/1262:1267, 1/2/1439:1446 | No text annotation Not in a motif group | ||
| J3_3J81_008 | 1/2/1282:1287, 1/2/1326:1331, 1/2/1417:1422 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_3J81_009 | 1/2/1291:1293, 1/2/1302:1305, 1/2/1317:1322 | No text annotation Not in a motif group | ||
| J3_3J81_010 | 1/2/1335:1337, 1/2/1384:1387, 1/2/1410:1413 | No text annotation Not in a motif group | homologous J3_4V88_040 NA | |
| J3_3J81_011 | 1/2/1468:1472, 1/2/1531:1538, 1/2/1569:1572 | No text annotation Not in a motif group | homologous J3_4V88_041 NA |
Problematic loops
No problematic loops
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