RNA 3D Hub //

Hairpin Loop Motif Atlas Release 1.18

Polymorphs
#Varna 2DMotifCore NtsInstances
1
  • HL_67042.17
HL_67042.17
  • Basepair signature: cWW-tSH-R-R
  • History status: Updated, 1 parent
  • GNRA (56)
  • GNRA variation (6)
    		• 6328
    2
    • HL_72498.17
    		HL_72498.17
    • Basepair signature: cWW-tWH-R-R-R
    • History status: Updated, 1 parent
  • T-loop with 2 stacked bulged bases (28)
  • T-loop with 2 bulged bases not stacked (2)
    		• 778
    3
    • HL_39895.11
    		HL_39895.11
    • Basepair signature: cWW-tSW-R
    • History status: Updated, 1 parent
  • UNCG (7)
  • UNCG variation (1)
    		• 546
    4
    • HL_18781.9
    		HL_18781.9
    • Basepair signature: cWW-tSH-R-R-R-R
    • History status: Updated, 1 parent
  • GNRA wlth tandem sheared (2)
    		• 830
    5
    • HL_91226.7
    		HL_91226.7
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
  • Pseudoknot geometry (1)
    		• 823
    6
    • HL_97270.8
    		HL_97270.8
    • Basepair signature: cWW-tWH-R-R-R
    • History status: Updated, 1 parent
  • T-loop with 2 stacked bulged bases (1)
  • Other HL (1)
  • T-loop with 1 bulged base (1)
    		• 721
    7
    • HL_71179.1
    		HL_71179.1
    • Basepair signature: cWW-R-R-R-R
    • History status: New id, 2 parents
  • Purine riboswitch (3)
    		• 720
    8
    • HL_74411.3
    		HL_74411.3
    • Basepair signature: cWW-tSH-R-R
    • History status: Updated, 1 parent
  • GNRA (5)
  • GNRA variation (1)
    		• 618
    9
    • HL_74465.7
    		HL_74465.7
    • Basepair signature: cWW-bif-R-R-R-R-R
    • History status: Updated, 1 parent
  • tRNA anticodon loop (7)
  • Anticodon loop related (1)
    		• 918
    10
    • HL_46175.6
    		HL_46175.6
    • Basepair signature: cWW-R-tSH-R-R-R-R
    • History status: Updated, 1 parent
    		1017
    11
    • HL_75759.9
    		HL_75759.9
    • Basepair signature: cWW-R
    • History status: Updated, 1 parent
  • Mini UNCG (1)
    		• 416
    12
    • HL_27271.4
    		HL_27271.4
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
  • Pseudoknot geometry (2)
    		• 615
    13
    • HL_33402.8
    		HL_33402.8
    • Basepair signature: cWW-tSH-R-R-R
    • History status: Updated, 1 parent
    		715
    14
    • HL_56824.7
    		HL_56824.7
    • Basepair signature: cWW-R-R
    • History status: Updated, 1 parent
    		514
    15
    • HL_82294.6
    		HL_82294.6
    • Basepair signature: cWW-cWW-R-R
    • History status: Updated, 1 parent
  • T-loop related (1)
    		• 713
    16
    • HL_68081.8
    		HL_68081.8
    • Basepair signature: cWW-R-R-tWH
    • History status: Updated, 1 parent
  • T-loop with unstacked turn (2)
    		• 613
    17
    • HL_48507.3
    		HL_48507.3
    • Basepair signature: cWW-tSH-R-R
    • History status: Updated, 1 parent
    		612
    18
    • HL_48039.4
    		HL_48039.4
    • Basepair signature: cWW-R
    • History status: Updated, 1 parent
    		412
    19
    • HL_80459.8
    		HL_80459.8
    • Basepair signature: cWW-R-R
    • History status: Updated, 1 parent
    		511
    20
    • HL_34027.7
    		HL_34027.7
    • Basepair signature: cWW-R-R-R
    • History status: Updated, 1 parent
    		611
    21
    • HL_01926.8
    		HL_01926.8
    • Basepair signature: cWW-bif-R-tSH-R
    • History status: Updated, 1 parent
    		811
    22
    • HL_24544.6
    		HL_24544.6
    • Basepair signature: cWW-tWH-R-tSH-R
    • History status: Updated, 1 parent
    		811
    23
    • HL_11547.7
    		HL_11547.7
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Updated, 1 parent
    		811
    24
    • HL_34108.7
    		HL_34108.7
    • Basepair signature: cWW-R
    • History status: Updated, 1 parent
    		410
    25
    • HL_17723.6
    		HL_17723.6
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
  • Pseudoknot geometry (3)
    		• 710
    26
    • HL_87136.7
    		HL_87136.7
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Updated, 1 parent
    		810
    27
    • HL_18156.7
    		HL_18156.7
    • Basepair signature: cWW-R-R-tWH-R
    • History status: Updated, 1 parent
    		710
    28
    • HL_70420.7
    		HL_70420.7
    • Basepair signature: cWW-tSH-cWH-tSH-tWH-tHW-tHW-R-R
    • History status: Updated, 1 parent
    		1310
    29
    • HL_46489.7
    		HL_46489.7
    • Basepair signature: cWW-tSH-R-R-R-R
    • History status: Updated, 1 parent
    		810
    30
    • HL_75579.7
    		HL_75579.7
    • Basepair signature: cWW
    • History status: Updated, 1 parent
    		310
    31
    • HL_41833.7
    		HL_41833.7
    • Basepair signature: cWW-tSH-tHH-tWW-R-R-R
    • History status: Updated, 1 parent
    		1110
    32
    • HL_90506.1
    		HL_90506.1
    • Basepair signature: cWW-R-R-R-R
    • History status: New id, 1 parent
    		79
    33
    • HL_39872.6
    		HL_39872.6
    • Basepair signature: cWW-cSW-R-R-R-R
    • History status: Exact match
    		89
    34
    • HL_85534.6
    		HL_85534.6
    • Basepair signature: cWW-tWH-tWH-R
    • History status: Updated, 1 parent
    		79
    35
    • HL_15603.2
    		HL_15603.2
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R
    • History status: Exact match
  • U1 small nuclear ribonucleoprotein A binding hairpin (1)
    		• 129
    36
    • HL_57087.2
    		HL_57087.2
    • Basepair signature: cWW-R
    • History status: Updated, 1 parent
    		48
    37
    • HL_88311.7
    		HL_88311.7
    • Basepair signature: cWW-R-tSW-R-R
    • History status: Updated, 1 parent
    		88
    38
    • HL_11509.7
    		HL_11509.7
    • Basepair signature: cWW-R-R-cSH-cSH-R
    • History status: Updated, 1 parent
    		98
    39
    • HL_99908.5
    		HL_99908.5
    • Basepair signature: cWW-cSH-tHW-R-R-R
    • History status: Updated, 1 parent
    		107
    40
    • HL_62228.7
    		HL_62228.7
    • Basepair signature: cWW-R-tSW-R
    • History status: Updated, 1 parent
    		67
    41
    • HL_19626.4
    		HL_19626.4
    • Basepair signature: cWW-cSW-R
    • History status: Updated, 1 parent
    		57
    42
    • HL_66174.4
    		HL_66174.4
    • Basepair signature: cWW-R-cSW-R-cSH
    • History status: Updated, 1 parent
    		97
    43
    • HL_42677.2
    		HL_42677.2
    • Basepair signature: cWW
    • History status: Exact match
  • Mini UNCG (3)
    		• 47
    44
    • HL_82538.5
    		HL_82538.5
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		57
    45
    • HL_27353.2
    		HL_27353.2
    • Basepair signature: cWW
    • History status: Updated, 1 parent
  • Mini UNCG (2)
    		• 37
    46
    • HL_45018.5
    		HL_45018.5
    • Basepair signature: cWW-cWW-R-cSS-cSS-R
    • History status: Updated, 1 parent
    		107
    47
    • HL_00311.2
    		HL_00311.2
    • Basepair signature: cWW-R-tHW-R-R-R-R-R-R
    • History status: Updated, 1 parent
    		117
    48
    • HL_72543.3
    		HL_72543.3
    • Basepair signature: cWW-tSH-R-R-R-R-R-R
    • History status: Exact match
    		106
    49
    • HL_48254.5
    		HL_48254.5
    • Basepair signature: cWW-cWH-R-R-R-R
    • History status: Updated, 1 parent
    		96
    50
    • HL_12908.2
    		HL_12908.2
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Updated, 1 parent
  • Pseudoknot geometry (1)
    		• 96
    51
    • HL_06643.3
    		HL_06643.3
    • Basepair signature: cWW-cSH
    • History status: Exact match
  • tRNA D-loop (3)
    		• 56
    52
    • HL_20199.1
    		HL_20199.1
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Exact match
  • Pseudoknot geometry (1)
    		• 96
    53
    • HL_64543.4
    		HL_64543.4
    • Basepair signature: cWW-R-cSS-R-R-R-R
    • History status: Exact match
    		96
    54
    • HL_86115.3
    		HL_86115.3
    • Basepair signature: cWW-cWS
    • History status: Updated, 1 parent
  • UNCG related (2)
    		• 45
    55
    • HL_96915.4
    		HL_96915.4
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Updated, 1 parent
    		95
    56
    • HL_39203.2
    		HL_39203.2
    • Basepair signature: cWW-cWW-R-tSW-R
    • History status: Updated, 1 parent
    		85
    57
    • HL_08382.4
    		HL_08382.4
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		65
    58
    • HL_94364.2
    		HL_94364.2
    • Basepair signature: cWW-tWH-R-tWH-R-R-R
    • History status: Updated, 1 parent
    		105
    59
    • HL_43357.3
    		HL_43357.3
    • Basepair signature: cWW-cWW-R-R-R-R-R
    • History status: Updated, 1 parent
    		105
    60
    • HL_72273.1
    		HL_72273.1
    • Basepair signature: cWW-cWS-R-R
    • History status: Exact match
  • tRNA D-loop (4)
    		• 65
    61
    • HL_95720.1
    		HL_95720.1
    • Basepair signature: cWW-R-tSH-R-R
    • History status: Exact match
    		85
    62
    • HL_80263.1
    		HL_80263.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R
    • History status: New id, 1 parent
    		125
    63
    • HL_86077.4
    		HL_86077.4
    • Basepair signature: cWW-tSH-R-R
    • History status: Updated, 1 parent
    		65
    64
    • HL_48116.3
    		HL_48116.3
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		64
    65
    • HL_25124.2
    		HL_25124.2
    • Basepair signature: cWW-tSW-R
    • History status: Exact match
  • UNCG (3)
    		• 54
    66
    • HL_61547.5
    		HL_61547.5
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		64
    67
    • HL_72846.1
    		HL_72846.1
    • Basepair signature: cWW-tSH-R-R-R-R-R
    • History status: Exact match
    		94
    68
    • HL_01475.1
    		HL_01475.1
    • Basepair signature: cWW-R-R-tWH-R-R-R-R
    • History status: New id, 1 parent
  • T-loop with unstacked turn (2)
    		• 104
    69
    • HL_57963.1
    		HL_57963.1
    • Basepair signature: cWW-R-R-R
    • History status: New id, 1 parent
  • GNRA (1)
    		• 64
    70
    • HL_13352.1
    		HL_13352.1
    • Basepair signature: cWW-cWS-R
    • History status: New id, 2 parents
  • tRNA D-loop (1)
    		• 54
    71
    • HL_90792.1
    		HL_90792.1
    • Basepair signature: cWW-cWW-R-R-R-R
    • History status: New id, 2 parents
    		94
    72
    • HL_13707.3
    		HL_13707.3
    • Basepair signature: cWW-tHH-cSH-R-R
    • History status: Updated, 1 parent
    		84
    73
    • HL_18587.3
    		HL_18587.3
    • Basepair signature: cWW-R-tWH-R-R-R
    • History status: Exact match
    		84
    74
    • HL_62881.1
    		HL_62881.1
    • Basepair signature: cWW-tSH-tHW-R-tSW-R-R
    • History status: Exact match
    		104
    75
    • HL_66677.2
    		HL_66677.2
    • Basepair signature: cWW-tSW-R
    • History status: Exact match
  • Fab BL3-6 binding hairpin with tSW (1)
    		• 54
    76
    • HL_19905.4
    		HL_19905.4
    • Basepair signature: cWW-R
    • History status: Exact match
    		44
    77
    • HL_31147.2
    		HL_31147.2
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Updated, 1 parent
    		94
    78
    • HL_19033.2
    		HL_19033.2
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Updated, 1 parent
    		104
    79
    • HL_82418.2
    		HL_82418.2
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		54
    80
    • HL_19066.1
    		HL_19066.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R
    • History status: New id, 1 parent
    		114
    81
    • HL_11376.1
    		HL_11376.1
    • Basepair signature: cWW
    • History status: Exact match
    		54
    82
    • HL_85551.1
    		HL_85551.1
    • Basepair signature: cWW-R-tWH-R-R-R-R-R-R-R
    • History status: New id, 1 parent
    		134
    83
    • HL_79956.2
    		HL_79956.2
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		64
    84
    • HL_92706.1
    		HL_92706.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • UNCG variation (1)
    		• 54
    85
    • HL_89131.2
    		HL_89131.2
    • Basepair signature: cWW-cWH-R-R-tWH-R-R-R
    • History status: Updated, 1 parent
    		114
    86
    • HL_42094.2
    		HL_42094.2
    • Basepair signature: cWW-cWS-R-R-R
    • History status: Exact match
  • tRNA D-loop (1)
    		• 73
    87
    • HL_65249.2
    		HL_65249.2
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		63
    88
    • HL_80492.2
    		HL_80492.2
    • Basepair signature: cWW-tSH-cWS-cWS-R
    • History status: Exact match
  • tRNA D-loop (1)
    		• 83
    89
    • HL_28339.2
    		HL_28339.2
    • Basepair signature: cWW-R
    • History status: Exact match
    		43
    90
    • HL_06122.2
    		HL_06122.2
    • Basepair signature: cWW-cSS-cSH
    • History status: Exact match
    		73
    91
    • HL_58083.3
    		HL_58083.3
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    		83
    92
    • HL_82098.1
    		HL_82098.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: New id, 2 parents
    		113
    93
    • HL_74307.1
    		HL_74307.1
    • Basepair signature: cWW-tSH-tSH-R
    • History status: Exact match
    		73
    94
    • HL_78361.1
    		HL_78361.1
    • Basepair signature: cWW-R-cSS-R-R
    • History status: Exact match
    		83
    95
    • HL_01788.3
    		HL_01788.3
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Updated, 1 parent
    		83
    96
    • HL_23290.2
    		HL_23290.2
    • Basepair signature: cWW-R-R-R-R
    • History status: Updated, 1 parent
  • T-loop related (1)
    		• 73
    97
    • HL_91142.1
    		HL_91142.1
    • Basepair signature: cWW-R
    • History status: Exact match
    		43
    98
    • HL_84911.1
    		HL_84911.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    		153
    99
    • HL_57225.1
    		HL_57225.1
    • Basepair signature: cWW-R-R-R-R-tSH-R-R-R-R
    • History status: New id, 1 parent
    		133
    100
    • HL_98833.3
    		HL_98833.3
    • Basepair signature: cWW-cWS-R-R-R-R
    • History status: Exact match
  • tRNA D-loop (2)
    		• 83
    101
    • HL_59516.1
    		HL_59516.1
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Exact match
    		93
    102
    • HL_41827.1
    		HL_41827.1
    • Basepair signature: cWW-R-tSW-R-R
    • History status: Exact match
    		73
    103
    • HL_91693.2
    		HL_91693.2
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		53
    104
    • HL_95969.1
    		HL_95969.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    		73
    105
    • HL_60200.2
    		HL_60200.2
    • Basepair signature: cWW-tWH-R-R-R-R
    • History status: Exact match
    		83
    106
    • HL_21419.2
    		HL_21419.2
    • Basepair signature: cWW
    • History status: Exact match
    		33
    107
    • HL_19221.2
    		HL_19221.2
    • Basepair signature: cWW-R-cSH
    • History status: Exact match
    		63
    108
    • HL_27429.5
    		HL_27429.5
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
    		103
    109
    • HL_21545.2
    		HL_21545.2
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
  • Pseudoknot geometry (1)
    		• 63
    110
    • HL_55684.1
    		HL_55684.1
    • Basepair signature: cWW-tSH-R-R
    • History status: Exact match
    		63
    111
    • HL_76766.4
    		HL_76766.4
    • Basepair signature: cWW-tSH-R
    • History status: Exact match
    		53
    112
    • HL_00394.1
    		HL_00394.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R-R
    • History status: New id, 2 parents
    		122
    113
    • HL_15793.1
    		HL_15793.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		52
    114
    • HL_24711.1
    		HL_24711.1
    • Basepair signature: cWW-tWH-R-R-R
    • History status: Exact match
    		72
    115
    • HL_05361.1
    		HL_05361.1
    • Basepair signature: cWW-cWW-R
    • History status: Exact match
    		62
    116
    • HL_27478.1
    		HL_27478.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    		112
    117
    • HL_77391.1
    		HL_77391.1
    • Basepair signature: cWW
    • History status: Exact match
    		32
    118
    • HL_01389.1
    		HL_01389.1
    • Basepair signature: cWW
    • History status: Exact match
  • Mini UNCG (1)
    		• 32
    119
    • HL_05894.1
    		HL_05894.1
    • Basepair signature: cWW-cWW-R-R-R-R-R
    • History status: New id, 1 parent
    		102
    120
    • HL_19399.1
    		HL_19399.1
    • Basepair signature: cWW-R-R-R-R-R-cSW-R-R-R-R-R-R
    • History status: Exact match
    		162
    121
    • HL_52338.1
    		HL_52338.1
    • Basepair signature: cWW-R
    • History status: New id, no parents
    		42
    122
    • HL_84575.1
    		HL_84575.1
    • Basepair signature: cWW-cWW-cWW-R-R-R-R-R-R
    • History status: New id, 1 parent
    		132
    123
    • HL_86123.2
    		HL_86123.2
    • Basepair signature: cWW-R-R-R-tWH-R-R-R
    • History status: Exact match
    		102
    124
    • HL_34912.1
    		HL_34912.1
    • Basepair signature: cWW-R
    • History status: Exact match
    		42
    125
    • HL_65924.1
    		HL_65924.1
    • Basepair signature: cWW-cWW-R-R-tWH-R-tWH-R-R-R
    • History status: Exact match
    		142
    126
    • HL_01766.1
    		HL_01766.1
    • Basepair signature: cWW-R-tSW-cSS-R
    • History status: Exact match
    		82
    127
    • HL_70383.1
    		HL_70383.1
    • Basepair signature: cWW-cWW-R-R-R-R-R
    • History status: Exact match
    		102
    128
    • HL_42436.1
    		HL_42436.1
    • Basepair signature: cWW-tHW-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    		152
    129
    • HL_93771.1
    		HL_93771.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		62
    130
    • HL_22952.1
    		HL_22952.1
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: New id, 1 parent
    		92
    131
    • HL_35652.1
    		HL_35652.1
    • Basepair signature: cWW-R-cHH-R-R-R-R-R
    • History status: Exact match
    		112
    132
    • HL_26495.1
    		HL_26495.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    		82
    133
    • HL_91125.1
    		HL_91125.1
    • Basepair signature: cWW-R
    • History status: New id, 2 parents
    		42
    134
    • HL_42553.1
    		HL_42553.1
    • Basepair signature: cWW-tSH-R-cWS-R-R-R
    • History status: Exact match
    		102
    135
    • HL_53279.1
    		HL_53279.1
    • Basepair signature: cWW-R-R-R
    • History status: New id, 1 parent
    		62
    136
    • HL_87554.1
    		HL_87554.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		52
    137
    • HL_49210.1
    		HL_49210.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
  • Pseudoknot (1)
    		• 72
    138
    • HL_08494.1
    		HL_08494.1
    • Basepair signature: cWW-cWW-R-R
    • History status: New id, 2 parents
    		72
    139
    • HL_94578.3
    		HL_94578.3
    • Basepair signature: cWW-cWS-R-R
    • History status: Updated, 1 parent
    		62
    140
    • HL_23337.1
    		HL_23337.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: New id, 1 parent
    		102
    141
    • HL_46388.1
    		HL_46388.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		52
    142
    • HL_98577.1
    		HL_98577.1
    • Basepair signature: cWW-R-R-tHW-R-R-R-R-R-R-R
    • History status: Exact match
    		132
    143
    • HL_20004.1
    		HL_20004.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		52
    144
    • HL_54719.1
    		HL_54719.1
    • Basepair signature: cWW-R
    • History status: Exact match
    		42
    145
    • HL_64371.5
    		HL_64371.5
    • Basepair signature: cWW-tSH-R-R-R-R-R-R-R-R
    • History status: Updated, 1 parent
    		122
    146
    • HL_41700.1
    		HL_41700.1
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Exact match
    		92
    147
    • HL_43821.1
    		HL_43821.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-R
    • History status: New id, 1 parent
    		172
    148
    • HL_64438.1
    		HL_64438.1
    • Basepair signature: cWW-tSH-tHS-R-R-R-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    		192
    149
    • HL_24473.3
    		HL_24473.3
    • Basepair signature: cWW-tSH-cWS-tSW-R-R-R-R-R
    • History status: Exact match
  • tRNA D-loop (2)
    		• 132
    150
    • HL_57263.1
    		HL_57263.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		52
    151
    • HL_50312.1
    		HL_50312.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
  • Mini UNCG (1)
    		• 62
    152
    • HL_72388.1
    		HL_72388.1
    • Basepair signature: cWW-cWW-R-R
    • History status: New id, 2 parents
    		72
    153
    • HL_33451.1
    		HL_33451.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    		112
    154
    • HL_38130.2
    		HL_38130.2
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    		112
    155
    • HL_50937.1
    		HL_50937.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
    		102
    156
    • HL_96309.1
    		HL_96309.1
    • Basepair signature: cWW-R-R-R-R
    • History status: New id, 1 parent
    		72
    157
    • HL_57621.1
    		HL_57621.1
    • Basepair signature: cWW-R-R-R
    • History status: New id, 1 parent
    		62
    158
    • HL_42077.3
    		HL_42077.3
    • Basepair signature: cWW-tSH-R
    • History status: Exact match
    		52
    159
    • HL_51271.1
    		HL_51271.1
    • Basepair signature: cWW-R
    • History status: Exact match
    		42
    160
    • HL_84172.1
    		HL_84172.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    		72
    161
    • HL_45343.1
    		HL_45343.1
    • Basepair signature: cWW-cWW-tWH-R-R-R-R-R
    • History status: New id, 1 parent
    		112
    162
    • HL_38777.1
    		HL_38777.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R
    • History status: New id, no parents
    		111
    163
    • HL_57644.1
    		HL_57644.1
    • Basepair signature: cWW-tWH-R-tSH-R
    • History status: Exact match
    		81
    164
    • HL_68435.1
    		HL_68435.1
    • Basepair signature: cWW-bif-R-R-R
    • History status: Exact match
    		71
    165
    • HL_89473.1
    		HL_89473.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    		71
    166
    • HL_19363.1
    		HL_19363.1
    • Basepair signature: cWW-cWS-R
    • History status: Exact match
  • tRNA D-loop (1)
    		• 51
    167
    • HL_52116.1
    		HL_52116.1
    • Basepair signature: cWW-cWS-R-R-R
    • History status: Exact match
  • tRNA D-loop (1)
    		• 71
    168
    • HL_61400.1
    		HL_61400.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: New id, no parents
    		81
    169
    • HL_84289.1
    		HL_84289.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R
    • History status: Exact match
    		111
    170
    • HL_93428.1
    		HL_93428.1
    • Basepair signature: cWW-R-R-cWH-R
    • History status: Exact match
    		71
    171
    • HL_12706.1
    		HL_12706.1
    • Basepair signature: cWW-tSW
    • History status: Exact match
    		41
    172
    • HL_21695.1
    		HL_21695.1
    • Basepair signature: cWW
    • History status: Exact match
    		31
    173
    • HL_45411.1
    		HL_45411.1
    • Basepair signature: cWW-tSW-R-R-R-R
    • History status: Exact match
    		81
    174
    • HL_56596.1
    		HL_56596.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: New id, no parents
    		111
    175
    • HL_17537.1
    		HL_17537.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    		81
    176
    • HL_57667.1
    		HL_57667.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    		71
    177
    • HL_68579.1
    		HL_68579.1
    • Basepair signature: cWW-cWW-R
    • History status: Exact match
    		61
    178
    • HL_89958.1
    		HL_89958.1
    • Basepair signature: cWW-R-tSH-R-R
    • History status: New id, 1 parent
    		81
    179
    • HL_99932.1
    		HL_99932.1
    • Basepair signature: cWW-cWH-R-R-R
    • History status: Exact match
    		71
    180
    • HL_42161.1
    		HL_42161.1
    • Basepair signature: cWW-cWW-cWW-R-R-R-R-R-R-R-R-R-R
    • History status: New id, 1 parent
    		171
    181
    • HL_93530.1
    		HL_93530.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    		71
    182
    • HL_22461.1
    		HL_22461.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    		281
    183
    • HL_45740.1
    		HL_45740.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    		71
    184
    • HL_56775.1
    		HL_56775.1
    • Basepair signature: cWW-cSH-R-R
    • History status: Exact match
    		71
    185
    • HL_65802.1
    		HL_65802.1
    • Basepair signature: cWW-tSH-tHH-R-R-R-R-R
    • History status: Exact match
    		111
    186
    • HL_77692.1
    		HL_77692.1
    • Basepair signature: cWW-tSH-cWS-cSH-R-R
    • History status: Exact match
    		101
    187
    • HL_96994.1
    		HL_96994.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    		111
    188
    • HL_25175.1
    		HL_25175.1
    • Basepair signature: cWW-L-R-R-cWW-R-cWW-cWW-R-R-R
    • History status: Exact match
    		161
    189
    • HL_39422.1
    		HL_39422.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    		71
    190
    • HL_48480.1
    		HL_48480.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    		71
    191
    • HL_70061.1
    		HL_70061.1
    • Basepair signature: cWW-cWH-cWW-R-R-R-R-R-tSH-R-R-R-R-R-R
    • History status: New id, no parents
    		191
    192
    • HL_81815.1
    		HL_81815.1
    • Basepair signature: cWW-cWH-R-R-R-R-R
    • History status: New id, no parents
    		91
    193
    • HL_19452.1
    		HL_19452.1
    • Basepair signature: cWW-R-R-cWS-cSH-R-R
    • History status: Exact match
    		111
    194
    • HL_28776.1
    		HL_28776.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		61
    195
    • HL_42345.1
    		HL_42345.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    		71
    196
    • HL_52540.1
    		HL_52540.1
    • Basepair signature: cWW
    • History status: Exact match
    		41
    197
    • HL_73972.1
    		HL_73972.1
    • Basepair signature: cWW-bif-tSW
    • History status: Exact match
    		61
    198
    • HL_84720.1
    		HL_84720.1
    • Basepair signature: cWW-L-R-R-R-L-cWW-L-R-L-cWW-R
    • History status: Exact match
    		161
    199
    • HL_93567.1
    		HL_93567.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    		71
    200
    • HL_22533.1
    		HL_22533.1
    • Basepair signature: cWW-cWW-R-R-R
    • History status: Exact match
    		81
    201
    • HL_45777.1
    		HL_45777.1
    • Basepair signature: cWW-L-R-cWW-R-tSH-tWW-R-cHW-R
    • History status: New id, no parents
    		161
    202
    • HL_56809.1
    		HL_56809.1
    • Basepair signature: cWW-R
    • History status: Exact match
    		41
    203
    • HL_78228.1
    		HL_78228.1
    • Basepair signature: cWW-R-R-R-R-cWS-R-R-R
    • History status: Exact match
    		121
    204
    • HL_97022.1
    		HL_97022.1
    • Basepair signature: cWW-tSH-R
    • History status: Exact match
    		51
    205
    • HL_25195.1
    		HL_25195.1
    • Basepair signature: cWW-cWH-R-R-R-R-R-R-R
    • History status: Exact match
    		121
    206
    • HL_39846.1
    		HL_39846.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    		311
    207
    • HL_30008.1
    		HL_30008.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		51
    208
    • HL_53015.1
    		HL_53015.1
    • Basepair signature: cWW-cSH-tSS-R-R
    • History status: Exact match
    		81
    209
    • HL_62564.1
    		HL_62564.1
    • Basepair signature: cWW-tSH-R
    • History status: Exact match
    		51
    210
    • HL_84768.1
    		HL_84768.1
    • Basepair signature: cWW-R
    • History status: Exact match
  • tRNA anticodon loop with synthetase (1)
    		• 41
    211
    • HL_46055.1
    		HL_46055.1
    • Basepair signature: cWW-R
    • History status: Exact match
    		41
    212
    • HL_87223.1
    		HL_87223.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    		71
    213
    • HL_49013.1
    		HL_49013.1
    • Basepair signature: cWW-tSH-R-R-R-R-R-R-R
    • History status: New id, no parents
    		121
    214
    • HL_58223.1
    		HL_58223.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		51
    215
    • HL_82288.1
    		HL_82288.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		61
    216
    • HL_19755.1
    		HL_19755.1
    • Basepair signature: cWW-cWW-tSH-tHS-R-R-R-R-R-R-cWW-R-R-R-R-R
    • History status: New id, no parents
    		221
    217
    • HL_30366.1
    		HL_30366.1
    • Basepair signature: cWW-tSH-tHW-tHW-cSH-R
    • History status: Exact match
    		111
    218
    • HL_84888.1
    		HL_84888.1
    • Basepair signature: cWW-cWW-R-tSH-R-R
    • History status: Exact match
    		91
    219
    • HL_13786.1
    		HL_13786.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		51
    220
    • HL_35865.1
    		HL_35865.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		51
    221
    • HL_78389.1
    		HL_78389.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		51
    222
    • HL_97784.1
    		HL_97784.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    		151
    223
    • HL_26579.1
    		HL_26579.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
    		51
    224
    • HL_59182.1
    		HL_59182.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    		151
    225
    • HL_70912.1
    		HL_70912.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    		71
    226
    • HL_53789.1
    		HL_53789.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		61
    227
    • HL_63997.1
    		HL_63997.1
    • Basepair signature: cWW
    • History status: Exact match
    		31
    228
    • HL_74451.1
    		HL_74451.1
    • Basepair signature: cWW-L-R-R-R-R-L-L-L-cWW
    • History status: Exact match
    		131
    229
    • HL_14384.1
    		HL_14384.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    		71
    230
    • HL_36151.1
    		HL_36151.1
    • Basepair signature: cWW-cWW-tWW-R-R-R-R-R
    • History status: Exact match
    		111
    231
    • HL_57217.1
    		HL_57217.1
    • Basepair signature: cWW-R-R-R-cSH
    • History status: Exact match
    		81
    232
    • HL_66877.1
    		HL_66877.1
    • Basepair signature: cWW-cWW-R-cSW-R-cSH
    • History status: Exact match
    		111
    233
    • HL_78422.1
    		HL_78422.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
  • Pseudoknot geometry (1)
    		• 101
    234
    • HL_87958.1
    		HL_87958.1
    • Basepair signature: cWW-R-cWW-R-R-R-R-R-cWH
    • History status: New id, no parents
    		131
    235
    • HL_03007.1
    		HL_03007.1
    • Basepair signature: cWW-cWS-R
    • History status: New id, no parents
    		61
    236
    • HL_27236.1
    		HL_27236.1
    • Basepair signature: cWW-cWS-R-R
    • History status: Exact match
    		71
    237
    • HL_40222.1
    		HL_40222.1
    • Basepair signature: cWW-R-R-tSH-R-R
    • History status: New id, no parents
    		91
    238
    • HL_49492.1
    		HL_49492.1
    • Basepair signature: cWW-tSH-tHW-cSH-R-R-R-R-R-R-R
    • History status: Exact match
    		141
    239
    • HL_59225.1
    		HL_59225.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		51
    240
    • HL_10075.1
    		HL_10075.1
    • Basepair signature: cWW-R-tSH-R-R
    • History status: Exact match
    		81
    241
    • HL_31261.1
    		HL_31261.1
    • Basepair signature: cWW-cSW-R-R-cWW
    • History status: New id, no parents
    		91
    242
    • HL_85018.1
    		HL_85018.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
    		101
    243
    • HL_95049.1
    		HL_95049.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    		81
    244
    • HL_14524.1
    		HL_14524.1
    • Basepair signature: cWW-cWW-R-R-R-R
    • History status: Exact match
    		91
    245
    • HL_24108.1
    		HL_24108.1
    • Basepair signature: cWW-cWW-R-R-R
    • History status: Exact match
    		81
    246
    • HL_36554.1
    		HL_36554.1
    • Basepair signature: cWW-bif-R-cWW-R
    • History status: New id, no parents
    		71
    247
    • HL_67000.1
    		HL_67000.1
    • Basepair signature: cWW-tSW-R
    • History status: Exact match
    		51
    248
    • HL_78507.1
    		HL_78507.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		51
    249
    • HL_88259.1
    		HL_88259.1
    • Basepair signature: cWW-R-R-R-R
    • History status: New id, 1 parent
    		71
    250
    • HL_03785.1
    		HL_03785.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		51
    251
    • HL_50018.1
    		HL_50018.1
    • Basepair signature: cWW-tSH-R-R-R
    • History status: Exact match
    		71
    252
    • HL_91581.1
    		HL_91581.1
    • Basepair signature: cWW-R-cWH-R-R-R
    • History status: New id, no parents
    		81
    253
    • HL_10116.1
    		HL_10116.1
    • Basepair signature: cWW-tSH-tHS-tSS-R-R-R-cWW-R-R-R-R-R
    • History status: Exact match
    		181
    254
    • HL_55202.1
    		HL_55202.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    		131
    255
    • HL_14536.1
    		HL_14536.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		61
    256
    • HL_37962.1
    		HL_37962.1
    • Basepair signature: cWW-tSH-R-R-R-R
    • History status: Exact match
    		81
    257
    • HL_46570.1
    		HL_46570.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    		81
    258
    • HL_79902.1
    		HL_79902.1
    • Basepair signature: cWW-tSH-tHS-R-R
    • History status: Exact match
    		81
    259
    • HL_98834.1
    		HL_98834.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		61
    260
    • HL_04305.1
    		HL_04305.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    		71
    261
    • HL_19074.1
    		HL_19074.1
    • Basepair signature: cWW-R-cSH-R
    • History status: Exact match
    		61
    262
    • HL_59610.1
    		HL_59610.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		51
    263
    • HL_83865.1
    		HL_83865.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		61
    264
    • HL_20806.1
    		HL_20806.1
    • Basepair signature: cWW-R-R-R-R-cHH-R-R
    • History status: Exact match
    		111
    265
    • HL_44390.1
    		HL_44390.1
    • Basepair signature: cWW-R-tSW-R-tWH-R-R-R
    • History status: Exact match
    		111
    266
    • HL_55272.1
    		HL_55272.1
    • Basepair signature: cWW-cWW-L-R-cSS-cWW
    • History status: Exact match
    		101
    267
    • HL_75624.1
    		HL_75624.1
    • Basepair signature: cWW-cWW-cWH-R
    • History status: Exact match
    		71
    268
    • HL_15291.1
    		HL_15291.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
  • GNRA (1)
    		• 61
    269
    • HL_47337.1
    		HL_47337.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		51
    270
    • HL_57339.1
    		HL_57339.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    		51
    271
    • HL_67761.1
    		HL_67761.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		61
    272
    • HL_88960.1
    		HL_88960.1
    • Basepair signature: cWW-R-tSW-R-R
    • History status: Exact match
    		81
    273
    • HL_99207.1
    		HL_99207.1
    • Basepair signature: cWW-tSS-R-R
    • History status: Exact match
    		71
    274
    • HL_04735.1
    		HL_04735.1
    • Basepair signature: cWW-tWH-R-R-R
    • History status: New id, no parents
    		71
    275
    • HL_19132.1
    		HL_19132.1
    • Basepair signature: cWW-tSH-R-tSH-R
    • History status: Exact match
    		81
    276
    • HL_27397.1
    		HL_27397.1
    • Basepair signature: cWW-cWW-R-R
    • History status: Exact match
    		71
    277
    • HL_72389.1
    		HL_72389.1
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Exact match
    		91
    278
    • HL_84030.1
    		HL_84030.1
    • Basepair signature: cWW-R-R-R
    • History status: New id, 1 parent
    		61
    279
    • HL_33640.1
    		HL_33640.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    		81
    280
    • HL_55450.1
    		HL_55450.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		61
    281
    • HL_64778.1
    		HL_64778.1
    • Basepair signature: cWW-bif-R-R-R-R
    • History status: New id, no parents
    		81
    282
    • HL_85802.1
    		HL_85802.1
    • Basepair signature: cWW-tWH-R-R
    • History status: New id, no parents
    		61
    283
    • HL_24707.1
    		HL_24707.1
    • Basepair signature: cWW-cWS
    • History status: Exact match
    		41
    284
    • HL_38138.1
    		HL_38138.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    		61
    285
    • HL_99612.1
    		HL_99612.1
    • Basepair signature: cWW-tSH-R-R-R-R
    • History status: Exact match
    		81
    286
    • HL_04979.1
    		HL_04979.1
    • Basepair signature: cWW-cSW-R-R-R-R
    • History status: Exact match
    		91
    287
    • HL_60203.1
    		HL_60203.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
    		51
    288
    • HL_93263.1
    		HL_93263.1
    • Basepair signature: cWW
    • History status: Exact match
    		21
    289
    • HL_33822.1
    		HL_33822.1
    • Basepair signature: cWW-cWW-R-R
    • History status: New id, no parents
    		71
    290
    • HL_64859.1
    		HL_64859.1
    • Basepair signature: cWW-cWW-tWW-cWH-cSH-cSS-L-L-tHS-cSH-R-R-cSH-L-cWW-R-R-R-R-R-R-tSH-R-R-R-R
    • History status: New id, no parents
    		341
    291
    • HL_96515.1
    		HL_96515.1
    • Basepair signature: cWW-tSH-R-R-R
    • History status: Exact match
    		71

    Coloring options:


    Updated, 1 parent 54; New id, 2 parents 8; Exact match 212; New id, 1 parent 20; New id, no parents 22;

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