5ADY | Motifs

71 Hairpin loops
130 Internal loops
10 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	HL_5ADY_001 ➜	1/A/34:48	NA	NA
2	HL_5ADY_002 ➜	1/A/86:90	NA	NA
3	HL_5ADY_003 ➜	1/B/59:68	NA	NA
4	HL_5ADY_004 ➜	1/B/87:95	NA	NA
5	HL_5ADY_005 ➜	1/B/123:128	NA	NA
6	HL_5ADY_006 ➜	1/B/137:142	NA	NA
7	HL_5ADY_007 ➜	1/B/158:168	NA	NA
8	HL_5ADY_008 ➜	1/B/188:208	NA	NA
9	HL_5ADY_009 ➜	1/B/225:230	NA	NA
10	HL_5ADY_010 ➜	1/B/246:252	NA	NA
11	HL_5ADY_011 ➜	1/B/305:312	NA	NA
12	HL_5ADY_012 ➜	1/B/319:323	NA	NA
13	HL_5ADY_013 ➜	1/B/327:335	NA	NA
14	HL_5ADY_014 ➜	1/B/381:393	NA	NA
15	HL_5ADY_015 ➜	1/B/410:417	NA	NA
16	HL_5ADY_016 ➜	1/B/462:467	NA	NA
17	HL_5ADY_017 ➜	1/B/487:493	NA	NA
18	HL_5ADY_018 ➜	1/B/543:550	NA	NA
19	HL_5ADY_019 ➜	1/B/564:577	NA	NA
20	HL_5ADY_020 ➜	1/B/611:617	NA	NA
21	HL_5ADY_021 ➜	1/B/629:634	NA	NA
22	HL_5ADY_022 ➜	1/B/640:648	NA	NA
23	HL_5ADY_023 ➜	1/B/712:719	NA	NA
24	HL_5ADY_024 ➜	1/B/744:753	NA	NA
25	HL_5ADY_025 ➜	1/B/779:785	NA	NA
26	HL_5ADY_026 ➜	1/B/825:832	NA	NA
27	HL_5ADY_027 ➜	1/B/882:894	NA	NA
28	HL_5ADY_028 ➜	1/B/955:962	NA	NA
29	HL_5ADY_029 ➜	1/B/978:985	NA	NA
30	HL_5ADY_030 ➜	1/B/1064:1074	NA	NA
31	HL_5ADY_031 ➜	1/B/1092:1099	NA	NA
32	HL_5ADY_032 ➜	1/B/1172:1177	NA	NA
33	HL_5ADY_033 ➜	1/B/1222:1227	NA	NA
34	HL_5ADY_034 ➜	1/B/1280:1290	NA	NA
35	HL_5ADY_035 ➜	1/B/1324:1330	NA	NA
36	HL_5ADY_036 ➜	1/B/1362:1369	NA	NA
37	HL_5ADY_037 ➜	1/B/1389:1398	NA	NA
38	HL_5ADY_038 ➜	1/B/1450:1461	NA	NA
39	HL_5ADY_039 ➜	1/B/1492:1498	NA	NA
40	HL_5ADY_040 ➜	1/B/1533:1538	NA	NA
41	HL_5ADY_041 ➜	1/B/1565:1568	NA	NA
42	HL_5ADY_042 ➜	1/B/1612:1619	NA	NA
43	HL_5ADY_043 ➜	1/B/1629:1637	NA	NA
44	HL_5ADY_044 ➜	1/B/1691:1696	NA	NA
45	HL_5ADY_045 ➜	1/B/1728:1731	NA	NA
46	HL_5ADY_046 ➜	1/B/1752:1756	NA	NA
47	HL_5ADY_047 ➜	1/B/1776:1788	NA	NA
48	HL_5ADY_048 ➜	1/B/1806:1811	NA	NA
49	HL_5ADY_050 ➜	1/B/1910:1920	NA	NA
50	HL_5ADY_051 ➜	1/B/1949:1957	NA	NA
51	HL_5ADY_052 ➜	1/B/2027:2036	NA	NA
52	HL_5ADY_053 ➜	1/B/2143:2148	NA	NA
53	HL_5ADY_054 ➜	1/B/2209:2215	NA	NA
54	HL_5ADY_055 ➜	1/B/2248:2256	NA	NA
55	HL_5ADY_056 ➜	1/B/2264:2276	NA	NA
56	HL_5ADY_057 ➜	1/B/2303:2313	NA	NA
57	HL_5ADY_058 ➜	1/B/2323:2332	NA	NA
58	HL_5ADY_059 ➜	1/B/2355:2362	NA	NA
59	HL_5ADY_060 ➜	1/B/2374:2379	NA	NA
60	HL_5ADY_061 ➜	1/B/2404:2413	NA	NA
61	HL_5ADY_062 ➜	1/B/2471:2479	NA	NA
62	HL_5ADY_063 ➜	1/B/2528:2535	NA	NA
63	HL_5ADY_064 ➜	1/B/2551:2557	NA	NA
64	HL_5ADY_065 ➜	1/B/2594:2599	NA	NA
65	HL_5ADY_066 ➜	1/B/2658:2663	NA	NA
66	HL_5ADY_067 ➜	1/B/2699:2708	NA	NA
67	HL_5ADY_068 ➜	1/B/2745:2759	NA	NA
68	HL_5ADY_069 ➜	1/B/2794:2802	NA	NA
69	HL_5ADY_070 ➜	1/B/2819:2827	NA	NA
70	HL_5ADY_071 ➜	1/B/2856:2861	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_5ADY_049 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_5ADY_001 ➜	1/A/17:18,1/A/65:67	NA	NA
2	IL_5ADY_002 ➜	1/A/23:28,1/A/56:60	NA	NA
3	IL_5ADY_003 ➜	1/A/29:32,1/A/50:55	NA	NA
4	IL_5ADY_004 ➜	1/A/71:79,1/A/97:105	NA	NA
5	IL_5ADY_005 ➜	1/A/80:82,1/A/94:96	NA	NA
6	IL_5ADY_007 ➜	1/B/36:37,1/B/442:444	NA	NA
7	IL_5ADY_008 ➜	1/B/43:44,1/B/434:436	NA	NA
8	IL_5ADY_009 ➜	1/B/81:85,1/B/97:105	NA	NA
9	IL_5ADY_010 ➜	1/B/155:158,1/B/168:171	NA	NA
10	IL_5ADY_011 ➜	1/B/239:245,1/B/253:258	NA	NA
11	IL_5ADY_012 ➜	1/B/269:271,1/B/366:370	NA	NA
12	IL_5ADY_013 ➜	1/B/274:281,1/B/359:363	NA	NA
13	IL_5ADY_015 ➜	1/B/284:286,1/B/354:356	NA	NA
14	IL_5ADY_016 ➜	1/B/291:293,1/B/347:349	NA	NA
15	IL_5ADY_017 ➜	1/B/293:295,1/B/343:347	NA	NA
16	IL_5ADY_018 ➜	1/B/533:535,1/B/558:560	NA	NA
17	IL_5ADY_019 ➜	1/B/536:539,1/B/554:557	NA	NA
18	IL_5ADY_022 ➜	1/B/605:611,1/B/617:623	NA	NA
19	IL_5ADY_023 ➜	1/B/672:678,1/B/799:808	NA	NA
20	IL_5ADY_025 ➜	1/B/702:703,1/B/728:730	NA	NA
21	IL_5ADY_026 ➜	1/B/703:707,1/B/724:728	NA	NA
22	IL_5ADY_027 ➜	1/B/709:712,1/B/719:722	NA	NA
23	IL_5ADY_029 ➜	1/B/738:741,1/B/756:758	NA	NA
24	IL_5ADY_032 ➜	1/B/843:849,1/B/929:935	NA	NA
25	IL_5ADY_033 ➜	1/B/850:851,1/B/926:928	NA	NA
26	IL_5ADY_035 ➜	1/B/856:862,1/B/915:921	NA	NA
27	IL_5ADY_036 ➜	1/B/862:863,1/B/913:915	NA	NA
28	IL_5ADY_037 ➜	1/B/864:868,1/B/909:912	NA	NA
29	IL_5ADY_038 ➜	1/B/870:872,1/B/905:907	NA	NA
30	IL_5ADY_039 ➜	1/B/874:882,1/B/894:903	NA	NA
31	IL_5ADY_040 ➜	1/B/993:996,1/B/1159:1161	NA	NA
32	IL_5ADY_041 ➜	1/B/997:1002,1/B/1153:1158	NA	NA
33	IL_5ADY_042 ➜	1/B/1003:1011,1/B/1150:1152	NA	NA
34	IL_5ADY_043 ➜	1/B/1011:1013,1/B/1149:1150	NA	NA
35	IL_5ADY_044 ➜	1/B/1018:1024,1/B/1140:1144	NA	NA
36	IL_5ADY_045 ➜	1/B/1024:1030,1/B/1124:1140	NA	NA
37	IL_5ADY_046 ➜	1/B/1031:1034,1/B/1121:1123	NA	NA
38	IL_5ADY_047 ➜	1/B/1038:1041,1/B/1114:1117	NA	NA
39	IL_5ADY_048 ➜	1/B/1043:1051,1/B/1108:1112	NA	NA
40	IL_5ADY_049 ➜	1/B/1059:1062,1/B/1076:1079	NA	NA
41	IL_5ADY_050 ➜	1/B/1196:1199,1/B/1246:1250	NA	NA
42	IL_5ADY_052 ➜	1/B/1202:1206,1/B/1240:1243	NA	NA
43	IL_5ADY_053 ➜	1/B/1208:1215,1/B/1234:1238	NA	NA
44	IL_5ADY_054 ➜	1/B/1217:1219,1/B/1230:1232	NA	NA
45	IL_5ADY_056 ➜	1/B/1319:1323,1/B/1331:1333	NA	NA
46	IL_5ADY_057 ➜	1/B/1351:1353,1/B/1379:1380	NA	NA
47	IL_5ADY_058 ➜	1/B/1353:1355,1/B/1376:1379	NA	NA
48	IL_5ADY_059 ➜	1/B/1356:1361,1/B/1370:1375	NA	NA
49	IL_5ADY_060 ➜	1/B/1414:1416,1/B/1582:1588	NA	NA
50	IL_5ADY_061 ➜	1/B/1417:1421,1/B/1577:1581	NA	NA
51	IL_5ADY_062 ➜	1/B/1432:1435,1/B/1557:1561	NA	NA
52	IL_5ADY_063 ➜	1/B/1437:1440,1/B/1551:1555	NA	NA
53	IL_5ADY_065 ➜	1/B/1471:1473,1/B/1518:1520	NA	NA
54	IL_5ADY_066 ➜	1/B/1474:1478,1/B/1513:1517	NA	NA
55	IL_5ADY_067 ➜	1/B/1481:1482,1/B/1507:1510	NA	NA
56	IL_5ADY_068 ➜	1/B/1488:1491,1/B/1499:1501	NA	NA
57	IL_5ADY_069 ➜	1/B/1526:1529,1/B/1542:1546	NA	NA
58	IL_5ADY_071 ➜	1/B/1651:1658,1/B/2002:2006	NA	NA
59	IL_5ADY_073 ➜	1/B/1663:1666,1/B/1994:1997	NA	NA
60	IL_5ADY_074 ➜	1/B/1666:1674,1/B/1990:1994	NA	NA
61	IL_5ADY_076 ➜	1/B/1686:1691,1/B/1696:1702	NA	NA
62	IL_5ADY_078 ➜	1/B/1712:1718,1/B/1742:1746	NA	NA
63	IL_5ADY_079 ➜	1/B/1720:1724,1/B/1736:1740	NA	NA
64	IL_5ADY_080 ➜	1/B/1727:1728,1/B/1731:1733	NA	NA
65	IL_5ADY_081 ➜	1/B/1767:1769,1/B/1983:1985	NA	NA
66	IL_5ADY_082 ➜	1/B/1770:1771,1/B/1980:1982	NA	NA
67	IL_5ADY_083 ➜	1/B/1798:1804,1/B/1813:1821	NA	NA
68	IL_5ADY_084 ➜	1/B/1841:1842,1/B/1898:1901	NA	NA
69	IL_5ADY_085 ➜	1/B/1846:1849,1/B/1893:1894	NA	NA
70	IL_5ADY_086 ➜	1/B/1849:1851,1/B/1891:1893	NA	NA
71	IL_5ADY_088 ➜	1/B/1907:1909,1/B/1921:1923	NA	NA
72	IL_5ADY_089 ➜	1/B/1933:1945,1/B/1961:1967	NA	NA
73	IL_5ADY_090 ➜	1/B/2045:2047,1/B/2621:2623	NA	NA
74	IL_5ADY_091 ➜	1/B/2049:2052,1/B/2617:2619	NA	NA
75	IL_5ADY_092 ➜	1/B/2053:2056,1/B/2612:2616	NA	NA
76	IL_5ADY_093 ➜	1/B/2067:2069,1/B/2442:2443	NA	NA
77	IL_5ADY_094 ➜	1/B/2070:2072,1/B/2437:2441	NA	NA
78	IL_5ADY_096 ➜	1/B/2081:2083,1/B/2236:2239	NA	NA
79	IL_5ADY_097 ➜	1/B/2083:2085,1/B/2234:2236	NA	NA
80	IL_5ADY_098 ➜	1/B/2085:2087,1/B/2232:2234	NA	NA
81	IL_5ADY_102 ➜	1/B/2202:2204,1/B/2220:2221	NA	NA
82	IL_5ADY_104 ➜	1/B/2259:2260,1/B/2280:2282	NA	NA
83	IL_5ADY_106 ➜	1/B/2350:2353,1/B/2364:2367	NA	NA
84	IL_5ADY_107 ➜	1/B/2397:2399,1/B/2417:2419	NA	NA
85	IL_5ADY_108 ➜	1/B/2400:2404,1/B/2413:2416	NA	NA
86	IL_5ADY_109 ➜	1/B/2457:2459,1/B/2493:2494	NA	NA
87	IL_5ADY_110 ➜	1/B/2459:2461,1/B/2489:2493	NA	NA
88	IL_5ADY_111 ➜	1/B/2466:2470,1/B/2480:2484	NA	NA
89	IL_5ADY_112 ➜	1/B/2509:2514,1/B/2570:2579	NA	NA
90	IL_5ADY_113 ➜	1/B/2522:2523,1/B/2540:2543	NA	NA
91	IL_5ADY_115 ➜	1/B/2591:2592,1/B/2601:2603	NA	NA
92	IL_5ADY_117 ➜	1/B/2636:2640,1/B/2774:2782	NA	NA
93	IL_5ADY_118 ➜	1/B/2652:2658,1/B/2663:2668	NA	NA
94	IL_5ADY_119 ➜	1/B/2680:2685,1/B/2724:2727	NA	NA
95	IL_5ADY_120 ➜	1/B/2687:2691,1/B/2718:2722	NA	NA
96	IL_5ADY_122 ➜	1/B/2695:2696,1/B/2711:2714	NA	NA
97	IL_5ADY_123 ➜	1/B/2696:2698,1/B/2709:2711	NA	NA
98	IL_5ADY_124 ➜	1/B/2737:2742,1/B/2762:2767	NA	NA
99	IL_5ADY_126 ➜	1/B/2806:2811,1/B/2889:2892	NA	NA
100	IL_5ADY_127 ➜	1/B/2816:2818,1/B/2828:2830	NA	NA
101	IL_5ADY_128 ➜	1/B/2838:2841,1/B/2876:2880	NA	NA
102	IL_5ADY_129 ➜	1/B/2843:2846,1/B/2870:2874	NA	NA
103	IL_5ADY_130 ➜	1/B/2847:2852,1/B/2865:2869	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_5ADY_006 ➜	complementary	NA
2	IL_5ADY_014 ➜	complementary	NA
3	IL_5ADY_020 ➜	complementary	NA
4	IL_5ADY_021 ➜	complementary	NA
5	IL_5ADY_024 ➜	complementary	NA
6	IL_5ADY_028 ➜	complementary	NA
7	IL_5ADY_030 ➜	complementary	NA
8	IL_5ADY_031 ➜	complementary	NA
9	IL_5ADY_034 ➜	complementary	NA
10	IL_5ADY_051 ➜	complementary	NA
11	IL_5ADY_055 ➜	complementary	NA
12	IL_5ADY_064 ➜	complementary	NA
13	IL_5ADY_070 ➜	complementary	NA
14	IL_5ADY_072 ➜	complementary	NA
15	IL_5ADY_075 ➜	complementary	NA
16	IL_5ADY_077 ➜	complementary	NA
17	IL_5ADY_087 ➜	missing nts	NA
18	IL_5ADY_095 ➜	complementary	NA
19	IL_5ADY_099 ➜	complementary	NA
20	IL_5ADY_100 ➜	complementary	NA
21	IL_5ADY_101 ➜	complementary	NA
22	IL_5ADY_103 ➜	complementary	NA
23	IL_5ADY_105 ➜	complementary	NA
24	IL_5ADY_114 ➜	complementary	NA
25	IL_5ADY_116 ➜	complementary	NA
26	IL_5ADY_121 ➜	complementary	NA
27	IL_5ADY_125 ➜	complementary	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_5ADY_001 ➜	1/A/9:16,1/A/68:70,1/A/106:111	NA	NA
2	J3_5ADY_002 ➜	1/B/682:690,1/B/772:777,1/B/787:795	NA	NA
3	J3_5ADY_003 ➜	1/B/697:700,1/B/732:736,1/B/760:765	NA	NA
4	J3_5ADY_004 ➜	1/B/1055:1058,1/B/1080:1090,1/B/1101:1104	NA	NA
5	J3_5ADY_005 ➜	1/B/1298:1304,1/B/1624:1627,1/B/1639:1642	NA	NA
6	J3_5ADY_006 ➜	1/B/1306:1309,1/B/1605:1612,1/B/1619:1622	NA	NA
7	J3_5ADY_007 ➜	1/B/2091:2093,1/B/2196:2200,1/B/2223:2228	NA	NA
8	J3_5ADY_008 ➜	1/B/2295:2299,1/B/2317:2323,1/B/2332:2337	NA	NA
9	J3_5ADY_009 ➜	1/B/2517:2520,1/B/2545:2547,1/B/2561:2567	NA	NA
10	J3_5ADY_010 ➜	1/B/2812:2815,1/B/2831:2836,1/B/2882:2888	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

5ADY Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops