5ADY Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5ADY_001 | 1/A/34:48 | No text annotation Not in a motif group | ||
| HL_5ADY_002 | 1/A/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_5ADY_003 | 1/B/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_5ADY_004 | 1/B/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_5ADY_005 | 1/B/123:128 | No text annotation Not in a motif group | homologous HL_7A0S_003 HL_75407.1 | |
| HL_5ADY_006 | 1/B/137:142 | UNCG Not in a motif group | geometric HL_5J7L_009 HL_03562.2 | |
| HL_5ADY_007 | 1/B/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_5ADY_008 | 1/B/188:208 | No text annotation Not in a motif group | ||
| HL_5ADY_009 | 1/B/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_5ADY_010 | 1/B/246:252 | No text annotation Not in a motif group | homologous HL_4WF9_008 HL_67216.7 | |
| HL_5ADY_011 | 1/B/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_5ADY_012 | 1/B/319:323 | No text annotation Not in a motif group | homologous HL_4WF9_011 HL_75407.1 | |
| HL_5ADY_013 | 1/B/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_5ADY_014 | 1/B/381:393 | No text annotation Not in a motif group | homologous HL_4WF9_013 HL_91503.4 | |
| HL_5ADY_015 | 1/B/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_5ADY_016 | 1/B/462:467 | No text annotation Not in a motif group | homologous HL_7A0S_015 HL_42097.1 | |
| HL_5ADY_017 | 1/B/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_5ADY_018 | 1/B/543:550 | No text annotation Not in a motif group | homologous HL_7RQB_017 NA | |
| HL_5ADY_019 | 1/B/564:577 | No text annotation Not in a motif group | ||
| HL_5ADY_020 | 1/B/611:617 | No text annotation Not in a motif group | ||
| HL_5ADY_021 | 1/B/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_5ADY_022 | 1/B/640:648 | No text annotation Not in a motif group | ||
| HL_5ADY_023 | 1/B/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_5ADY_024 | 1/B/744:753 | No text annotation Not in a motif group | homologous HL_7A0S_022 HL_39334.6 | |
| HL_5ADY_025 | 1/B/779:785 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_5ADY_026 | 1/B/825:832 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_86373.2 | |
| HL_5ADY_027 | 1/B/882:894 | No text annotation Not in a motif group | ||
| HL_5ADY_028 | 1/B/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_5ADY_029 | 1/B/978:985 | No text annotation Not in a motif group | homologous HL_4WF9_028 HL_64430.2 | |
| HL_5ADY_030 | 1/B/1064:1074 | No text annotation Not in a motif group | homologous HL_5J7L_161 HL_07145.1 | |
| HL_5ADY_031 | 1/B/1092:1099 | No text annotation Not in a motif group | homologous HL_7RQB_030 NA | |
| HL_5ADY_032 | 1/B/1172:1177 | No text annotation Not in a motif group | ||
| HL_5ADY_033 | 1/B/1222:1227 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
| HL_5ADY_034 | 1/B/1280:1290 | No text annotation Not in a motif group | ||
| HL_5ADY_035 | 1/B/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_5ADY_036 | 1/B/1362:1369 | No text annotation Not in a motif group | ||
| HL_5ADY_037 | 1/B/1389:1398 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_5ADY_038 | 1/B/1450:1461 | No text annotation Not in a motif group | ||
| HL_5ADY_039 | 1/B/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_5ADY_040 | 1/B/1533:1538 | UNCG Not in a motif group | geometric HL_5D5L_003 HL_03562.2 | |
| HL_5ADY_041 | 1/B/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_5ADY_042 | 1/B/1612:1619 | No text annotation Not in a motif group | geometric HL_4WF9_038 HL_64430.2 | |
| HL_5ADY_043 | 1/B/1629:1637 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_5ADY_044 | 1/B/1691:1696 | No text annotation Not in a motif group | geometric HL_6QN3_003 HL_03562.2 | |
| HL_5ADY_045 | 1/B/1728:1731 | No text annotation Not in a motif group | homologous HL_5J7L_176 HL_98426.1 | |
| HL_5ADY_046 | 1/B/1752:1756 | No text annotation Not in a motif group | homologous HL_7A0S_044 HL_76539.2 | |
| HL_5ADY_047 | 1/B/1776:1788 | No text annotation Not in a motif group | homologous HL_7A0S_045 HL_43667.1 | |
| HL_5ADY_048 | 1/B/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_5ADY_050 | 1/B/1910:1920 | No text annotation Not in a motif group | ||
| HL_5ADY_051 | 1/B/1949:1957 | No text annotation Not in a motif group | homologous HL_4WF9_046 HL_51824.1 | |
| HL_5ADY_052 | 1/B/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_5ADY_053 | 1/B/2143:2148 | No text annotation Not in a motif group | ||
| HL_5ADY_054 | 1/B/2209:2215 | No text annotation Not in a motif group | homologous HL_4WF9_048 HL_16845.6 | |
| HL_5ADY_055 | 1/B/2248:2256 | No text annotation Not in a motif group | ||
| HL_5ADY_056 | 1/B/2264:2276 | No text annotation Not in a motif group | homologous HL_7A0S_053 HL_19870.6 | |
| HL_5ADY_057 | 1/B/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_5ADY_058 | 1/B/2323:2332 | No text annotation Not in a motif group | ||
| HL_5ADY_059 | 1/B/2355:2362 | No text annotation Not in a motif group | homologous HL_7A0S_056 HL_84085.2 | |
| HL_5ADY_060 | 1/B/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_5ADY_061 | 1/B/2404:2413 | No text annotation Not in a motif group | ||
| HL_5ADY_062 | 1/B/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_5ADY_063 | 1/B/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_5ADY_064 | 1/B/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_5ADY_065 | 1/B/2594:2599 | No text annotation Not in a motif group | homologous HL_7A0S_062 HL_42097.1 | |
| HL_5ADY_066 | 1/B/2658:2663 | No text annotation Not in a motif group | ||
| HL_5ADY_067 | 1/B/2699:2708 | No text annotation Not in a motif group | ||
| HL_5ADY_068 | 1/B/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_5ADY_069 | 1/B/2794:2802 | No text annotation Not in a motif group | ||
| HL_5ADY_070 | 1/B/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_5ADY_071 | 1/B/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5ADY_049 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5ADY_001 | 1/A/17:18, 1/A/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.2 | |
| IL_5ADY_002 | 1/A/23:28, 1/A/56:60 | No text annotation Not in a motif group | ||
| IL_5ADY_003 | 1/A/29:32, 1/A/50:55 | No text annotation Not in a motif group | ||
| IL_5ADY_004 | 1/A/71:79, 1/A/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
| IL_5ADY_005 | 1/A/80:82, 1/A/94:96 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_1L9A_004 IL_38958.7 | |
| IL_5ADY_007 | 1/B/36:37, 1/B/442:444 | No text annotation Not in a motif group | ||
| IL_5ADY_008 | 1/B/43:44, 1/B/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_5ADY_009 | 1/B/81:85, 1/B/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_5ADY_010 | 1/B/155:158, 1/B/168:171 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_30621.2 | |
| IL_5ADY_011 | 1/B/239:245, 1/B/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_5ADY_012 | 1/B/269:271, 1/B/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_5ADY_013 | 1/B/274:281, 1/B/359:363 | No text annotation Not in a motif group | ||
| IL_5ADY_015 | 1/B/284:286, 1/B/354:356 | No text annotation Not in a motif group | geometric IL_5J7L_326 IL_95997.1 | |
| IL_5ADY_016 | 1/B/291:293, 1/B/347:349 | Isolated cWH basepair Not in a motif group | geometric IL_3R1D_002 IL_51629.2 | |
| IL_5ADY_017 | 1/B/293:295, 1/B/343:347 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.1 | |
| IL_5ADY_018 | 1/B/533:535, 1/B/558:560 | No text annotation Not in a motif group | geometric IL_4WF9_018 IL_51629.2 | |
| IL_5ADY_019 | 1/B/536:539, 1/B/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_5ADY_022 | 1/B/605:611, 1/B/617:623 | No text annotation Not in a motif group | ||
| IL_5ADY_023 | 1/B/672:678, 1/B/799:808 | No text annotation Not in a motif group | ||
| IL_5ADY_025 | 1/B/702:703, 1/B/728:730 | Single bulged G Not in a motif group | geometric IL_4WF9_023 IL_00225.2 | |
| IL_5ADY_026 | 1/B/703:707, 1/B/724:728 | Triple sheared Not in a motif group | homologous IL_5J7L_263 IL_56467.8 | |
| IL_5ADY_027 | 1/B/709:712, 1/B/719:722 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_391 IL_30621.2 | |
| IL_5ADY_029 | 1/B/738:741, 1/B/756:758 | No text annotation Not in a motif group | ||
| IL_5ADY_032 | 1/B/843:849, 1/B/929:935 | No text annotation Not in a motif group | ||
| IL_5ADY_033 | 1/B/850:851, 1/B/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_5ADY_035 | 1/B/856:862, 1/B/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_5ADY_036 | 1/B/862:863, 1/B/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.2 | |
| IL_5ADY_037 | 1/B/864:868, 1/B/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_5ADY_038 | 1/B/870:872, 1/B/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_5ADY_039 | 1/B/874:882, 1/B/894:903 | No text annotation Not in a motif group | ||
| IL_5ADY_040 | 1/B/993:996, 1/B/1159:1161 | Isolated cWS basepair Not in a motif group | geometric IL_7A0S_041 IL_52767.2 | |
| IL_5ADY_041 | 1/B/997:1002, 1/B/1153:1158 | UAA/GAN with extra cWW Not in a motif group | geometric IL_4WF9_104 IL_49767.5 | |
| IL_5ADY_042 | 1/B/1003:1011, 1/B/1150:1152 | No text annotation Not in a motif group | ||
| IL_5ADY_043 | 1/B/1011:1013, 1/B/1149:1150 | Single bulged U Not in a motif group | geometric IL_7RQB_038 IL_83039.13 | |
| IL_5ADY_044 | 1/B/1018:1024, 1/B/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_5ADY_045 | 1/B/1024:1030, 1/B/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_5ADY_046 | 1/B/1031:1034, 1/B/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_5ADY_047 | 1/B/1038:1041, 1/B/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_5ADY_048 | 1/B/1043:1051, 1/B/1108:1112 | No text annotation Not in a motif group | ||
| IL_5ADY_049 | 1/B/1059:1062, 1/B/1076:1079 | No text annotation Not in a motif group | homologous IL_6PRV_001 IL_23544.2 | |
| IL_5ADY_050 | 1/B/1196:1199, 1/B/1246:1250 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_5ADY_052 | 1/B/1202:1206, 1/B/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_5ADY_053 | 1/B/1208:1215, 1/B/1234:1238 | No text annotation Not in a motif group | ||
| IL_5ADY_054 | 1/B/1217:1219, 1/B/1230:1232 | No text annotation Not in a motif group | geometric IL_5J7L_326 IL_95997.1 | |
| IL_5ADY_056 | 1/B/1319:1323, 1/B/1331:1333 | No text annotation Not in a motif group | ||
| IL_5ADY_057 | 1/B/1351:1353, 1/B/1379:1380 | No text annotation Not in a motif group | ||
| IL_5ADY_058 | 1/B/1353:1355, 1/B/1376:1379 | No text annotation Not in a motif group | ||
| IL_5ADY_059 | 1/B/1356:1361, 1/B/1370:1375 | No text annotation Not in a motif group | ||
| IL_5ADY_060 | 1/B/1414:1416, 1/B/1582:1588 | No text annotation Not in a motif group | ||
| IL_5ADY_061 | 1/B/1417:1421, 1/B/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_5ADY_062 | 1/B/1432:1435, 1/B/1557:1561 | No text annotation Not in a motif group | ||
| IL_5ADY_063 | 1/B/1437:1440, 1/B/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7A0S_053 IL_04059.1 | |
| IL_5ADY_065 | 1/B/1471:1473, 1/B/1518:1520 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_5ADY_066 | 1/B/1474:1478, 1/B/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_5ADY_067 | 1/B/1481:1482, 1/B/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.4 | |
| IL_5ADY_068 | 1/B/1488:1491, 1/B/1499:1501 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
| IL_5ADY_069 | 1/B/1526:1529, 1/B/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_5ADY_071 | 1/B/1651:1658, 1/B/2002:2006 | No text annotation Not in a motif group | ||
| IL_5ADY_073 | 1/B/1663:1666, 1/B/1994:1997 | No text annotation Not in a motif group | ||
| IL_5ADY_074 | 1/B/1666:1674, 1/B/1990:1994 | No text annotation Not in a motif group | ||
| IL_5ADY_076 | 1/B/1686:1691, 1/B/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_5ADY_078 | 1/B/1712:1718, 1/B/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_309 IL_88269.3 | |
| IL_5ADY_079 | 1/B/1720:1724, 1/B/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
| IL_5ADY_080 | 1/B/1727:1728, 1/B/1731:1733 | Single bulged C Not in a motif group | geometric IL_7KGA_004 IL_61258.12 | |
| IL_5ADY_081 | 1/B/1767:1769, 1/B/1983:1985 | No text annotation Not in a motif group | geometric IL_3R1D_012 IL_51629.2 | |
| IL_5ADY_082 | 1/B/1770:1771, 1/B/1980:1982 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_5ADY_083 | 1/B/1798:1804, 1/B/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_5ADY_084 | 1/B/1841:1842, 1/B/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_067 IL_16396.2 | |
| IL_5ADY_085 | 1/B/1846:1849, 1/B/1893:1894 | No text annotation Not in a motif group | homologous IL_4WF9_072 NA | |
| IL_5ADY_086 | 1/B/1849:1851, 1/B/1891:1893 | No text annotation Not in a motif group | geometric IL_4KR9_001 IL_51629.2 | |
| IL_5ADY_088 | 1/B/1907:1909, 1/B/1921:1923 | No text annotation Not in a motif group | geometric IL_2ZNI_001 IL_51629.2 | |
| IL_5ADY_089 | 1/B/1933:1945, 1/B/1961:1967 | No text annotation Not in a motif group | ||
| IL_5ADY_090 | 1/B/2045:2047, 1/B/2621:2623 | Isolated cWH basepair Not in a motif group | geometric IL_4WF9_045 IL_51629.2 | |
| IL_5ADY_091 | 1/B/2049:2052, 1/B/2617:2619 | No text annotation Not in a motif group | geometric IL_6DME_003 IL_63450.2 | |
| IL_5ADY_092 | 1/B/2053:2056, 1/B/2612:2616 | No text annotation Not in a motif group | ||
| IL_5ADY_093 | 1/B/2067:2069, 1/B/2442:2443 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.13 | |
| IL_5ADY_094 | 1/B/2070:2072, 1/B/2437:2441 | No text annotation Not in a motif group | ||
| IL_5ADY_096 | 1/B/2081:2083, 1/B/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5J7L_325 IL_38958.7 | |
| IL_5ADY_097 | 1/B/2083:2085, 1/B/2234:2236 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_5ADY_098 | 1/B/2085:2087, 1/B/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_5ADY_102 | 1/B/2202:2204, 1/B/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_5ADY_104 | 1/B/2259:2260, 1/B/2280:2282 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_5ADY_106 | 1/B/2350:2353, 1/B/2364:2367 | Double sheared Not in a motif group | geometric IL_5J7L_333 IL_09705.9 | |
| IL_5ADY_107 | 1/B/2397:2399, 1/B/2417:2419 | No text annotation Not in a motif group | geometric IL_4V88_444 IL_95997.1 | |
| IL_5ADY_108 | 1/B/2400:2404, 1/B/2413:2416 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_5ADY_109 | 1/B/2457:2459, 1/B/2493:2494 | Major groove platform Not in a motif group | geometric IL_5TBW_107 IL_76223.2 | |
| IL_5ADY_110 | 1/B/2459:2461, 1/B/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_5ADY_111 | 1/B/2466:2470, 1/B/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_5ADY_112 | 1/B/2509:2514, 1/B/2570:2579 | No text annotation Not in a motif group | ||
| IL_5ADY_113 | 1/B/2522:2523, 1/B/2540:2543 | No text annotation Not in a motif group | ||
| IL_5ADY_115 | 1/B/2591:2592, 1/B/2601:2603 | Single bulged A Not in a motif group | homologous IL_5J7L_344 IL_37497.2 | |
| IL_5ADY_117 | 1/B/2636:2640, 1/B/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
| IL_5ADY_118 | 1/B/2652:2658, 1/B/2663:2668 | No text annotation Not in a motif group | ||
| IL_5ADY_119 | 1/B/2680:2685, 1/B/2724:2727 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
| IL_5ADY_120 | 1/B/2687:2691, 1/B/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_5ADY_122 | 1/B/2695:2696, 1/B/2711:2714 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_349 IL_71530.2 | |
| IL_5ADY_123 | 1/B/2696:2698, 1/B/2709:2711 | No text annotation Not in a motif group | geometric IL_7A0S_026 IL_51629.2 | |
| IL_5ADY_124 | 1/B/2737:2742, 1/B/2762:2767 | UAA/GAN with extra cWW Not in a motif group | geometric IL_7A0S_098 IL_49767.5 | |
| IL_5ADY_126 | 1/B/2806:2811, 1/B/2889:2892 | No text annotation Not in a motif group | ||
| IL_5ADY_127 | 1/B/2816:2818, 1/B/2828:2830 | No text annotation Not in a motif group | geometric IL_4V88_444 IL_95997.1 | |
| IL_5ADY_128 | 1/B/2838:2841, 1/B/2876:2880 | No text annotation Not in a motif group | ||
| IL_5ADY_129 | 1/B/2843:2846, 1/B/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_5ADY_130 | 1/B/2847:2852, 1/B/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5ADY_006 | No text annotation | ||
| IL_5ADY_014 | No text annotation | ||
| IL_5ADY_020 | No text annotation | ||
| IL_5ADY_021 | No text annotation | ||
| IL_5ADY_024 | No text annotation | ||
| IL_5ADY_028 | No text annotation | ||
| IL_5ADY_030 | UU cWW | ||
| IL_5ADY_031 | No text annotation | ||
| IL_5ADY_034 | UU cWW | ||
| IL_5ADY_051 | Self complementary | ||
| IL_5ADY_055 | No text annotation | ||
| IL_5ADY_064 | No text annotation | ||
| IL_5ADY_070 | No text annotation | ||
| IL_5ADY_072 | No text annotation | ||
| IL_5ADY_075 | No text annotation | ||
| IL_5ADY_077 | No text annotation | ||
| IL_5ADY_087 | UAA/GAN related | ||
| IL_5ADY_095 | No text annotation | ||
| IL_5ADY_099 | No text annotation | ||
| IL_5ADY_100 | Isolated near basepair | ||
| IL_5ADY_101 | No text annotation | ||
| IL_5ADY_103 | Tandem non-canonical cWW pairs | ||
| IL_5ADY_105 | No text annotation | ||
| IL_5ADY_114 | No text annotation | ||
| IL_5ADY_116 | UG cWW | ||
| IL_5ADY_121 | No text annotation | ||
| IL_5ADY_125 | Isolated cWH basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5ADY_001 | 1/A/9:16, 1/A/68:70, 1/A/106:111 | No text annotation Not in a motif group | ||
| J3_5ADY_002 | 1/B/682:690, 1/B/772:777, 1/B/787:795 | No text annotation Not in a motif group | ||
| J3_5ADY_003 | 1/B/697:700, 1/B/732:736, 1/B/760:765 | No text annotation Not in a motif group | ||
| J3_5ADY_004 | 1/B/1055:1058, 1/B/1080:1090, 1/B/1101:1104 | No text annotation Not in a motif group | ||
| J3_5ADY_005 | 1/B/1298:1304, 1/B/1624:1627, 1/B/1639:1642 | No text annotation Not in a motif group | ||
| J3_5ADY_006 | 1/B/1306:1309, 1/B/1605:1612, 1/B/1619:1622 | No text annotation Not in a motif group | ||
| J3_5ADY_007 | 1/B/2091:2093, 1/B/2196:2200, 1/B/2223:2228 | No text annotation Not in a motif group | ||
| J3_5ADY_008 | 1/B/2295:2299, 1/B/2317:2323, 1/B/2332:2337 | No text annotation Not in a motif group | ||
| J3_5ADY_009 | 1/B/2517:2520, 1/B/2545:2547, 1/B/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_5ADY_010 | 1/B/2812:2815, 1/B/2831:2836, 1/B/2882:2888 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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