Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6N8K_0011/1/38:45No text annotation
Not in a motif group
homologous
HL_5TBW_001
HL_06192.2
HL_6N8K_0021/1/69:74No text annotation
Not in a motif group
homologous
HL_8C3A_002
HL_02862.2
HL_6N8K_0031/1/90:96No text annotation
Not in a motif group
homologous
HL_8C3A_003
HL_67216.7
HL_6N8K_0041/1/132:136No text annotation
Not in a motif group
homologous
HL_5TBW_004
HL_98426.1
HL_6N8K_0051/1/194:201No text annotation
Not in a motif group
homologous
HL_8C3A_005
HL_89380.2
HL_6N8K_0061/1/208:212No text annotation
Not in a motif group
homologous
HL_8C3A_006
HL_98984.2
HL_6N8K_0071/1/216:224No text annotation
Not in a motif group
homologous
HL_5TBW_007
HL_08002.8
HL_6N8K_0081/1/278:287No text annotation
Not in a motif group
homologous
HL_8C3A_008
HL_71554.2
HL_6N8K_0101/1/357:362No text annotation
Not in a motif group
homologous
HL_8C3A_010
HL_42097.1
HL_6N8K_0111/1/382:387No text annotation
Not in a motif group
homologous
HL_8C3A_011
HL_42097.1
HL_6N8K_0121/1/540:551No text annotation
Not in a motif group
HL_6N8K_0131/1/599:604GNRA
Not in a motif group
homologous
HL_5TBW_013
HL_42097.1
HL_6N8K_0141/1/640:649No text annotation
Not in a motif group
homologous
HL_8C3A_014
HL_89380.2
HL_6N8K_0151/1/686:694No text annotation
Not in a motif group
homologous
HL_5TBW_015
HL_03345.1
HL_6N8K_0161/1/707:712GNRA
Not in a motif group
homologous
HL_5TBW_016
HL_42097.1
HL_6N8K_0171/1/732:737GNRA
Not in a motif group
homologous
HL_5TBW_017
HL_42097.1
HL_6N8K_0221/1/958:963No text annotation
Not in a motif group
homologous
HL_5TBW_022
HL_94803.1
HL_6N8K_0251/1/1126:1132GNRA
Not in a motif group
homologous
HL_5TBW_025
HL_42097.1
HL_6N8K_0261/1/1148:1155No text annotation
Not in a motif group
homologous
HL_5TBW_026
HL_64430.2
HL_6N8K_0301/1/1403:1408No text annotation
Not in a motif group
homologous
HL_8C3A_030
HL_42097.1
HL_6N8K_0621/1/2835:2853No text annotation
Not in a motif group
HL_6N8K_0631/1/2897:2904No text annotation
Not in a motif group
homologous
HL_5TBW_062
HL_88526.2
HL_6N8K_0641/1/2920:2926No text annotation
Not in a motif group
geometric
HL_5TBW_063
HL_43656.2
HL_6N8K_0661/1/3025:3030No text annotation
Not in a motif group
geometric
HL_5J7L_179
HL_42097.1
HL_6N8K_0671/1/3067:3074No text annotation
Not in a motif group
HL_6N8K_0681/1/3110:3124No text annotation
Not in a motif group
homologous
HL_8C3A_068
HL_56677.7
HL_6N8K_0691/1/3194:3197No text annotation
Not in a motif group
geometric
HL_5TBW_068
HL_98426.1
HL_6N8K_0701/1/3240:3247No text annotation
Not in a motif group
homologous
HL_5TBW_069
HL_14449.2
HL_6N8K_0711/1/3303:3311No text annotation
Not in a motif group
geometric
HL_5TBW_070
HL_27930.1
HL_6N8K_0721/1/3349:3356Other HL
Not in a motif group
geometric
HL_5J7L_200
HL_34168.2
HL_6N8K_0731/2/36:41No text annotation
Not in a motif group
geometric
HL_5TBW_185
HL_87939.1
HL_6N8K_0741/2/88:93GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_42097.1
HL_6N8K_0751/3/69:89No text annotation
Not in a motif group
HL_6N8K_0761/3/108:114No text annotation
Not in a motif group
homologous
HL_5TBW_075
HL_87939.1
HL_6N8K_0771/3/124:129No text annotation
Not in a motif group
homologous
HL_5TBW_076
HL_96851.2

Problematic loops

#loop idProblemSequence
HL_6N8K_009No text annotation
HL_6N8K_018No text annotation
HL_6N8K_019No text annotation
HL_6N8K_020No text annotation
HL_6N8K_021No text annotation
HL_6N8K_023No text annotation
HL_6N8K_024No text annotation
HL_6N8K_027Other HL
HL_6N8K_028No text annotation
HL_6N8K_029No text annotation
HL_6N8K_031No text annotation
HL_6N8K_032No text annotation
HL_6N8K_033Other HL
HL_6N8K_034No text annotation
HL_6N8K_035No text annotation
HL_6N8K_036GNRA
HL_6N8K_037No text annotation
HL_6N8K_038No text annotation
HL_6N8K_039No text annotation
HL_6N8K_040No text annotation
HL_6N8K_041No text annotation
HL_6N8K_042GNRA with one bulged base
HL_6N8K_043No text annotation
HL_6N8K_044No text annotation
HL_6N8K_045No text annotation
HL_6N8K_046No text annotation
HL_6N8K_047No text annotation
HL_6N8K_048Other HL
HL_6N8K_049No text annotation
HL_6N8K_050No text annotation
HL_6N8K_051No text annotation
HL_6N8K_052No text annotation
HL_6N8K_053No text annotation
HL_6N8K_054No text annotation
HL_6N8K_055No text annotation
HL_6N8K_056No text annotation
HL_6N8K_057No text annotation
HL_6N8K_058No text annotation
HL_6N8K_059No text annotation
HL_6N8K_060GNRA
HL_6N8K_061No text annotation
HL_6N8K_065GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6N8K_0011/1/3:4,
1/3/155:156
No text annotation
Not in a motif group
IL_6N8K_0021/1/7:8,
1/3/150:152
Single bulged C
Not in a motif group
homologous
IL_5TBW_002
IL_61258.12
IL_6N8K_0031/1/12:15,
1/3/144:146
No text annotation
Not in a motif group
geometric
IL_4V9F_105
IL_95997.1
IL_6N8K_0041/1/27:28,
1/1/56:58
Single stack bend
Not in a motif group
homologous
IL_5TBW_004
IL_76488.2
IL_6N8K_0051/1/31:38,
1/1/45:53
tSH-tHW-tHH-tHS
Not in a motif group
geometric
IL_5TBW_005
IL_35728.2
IL_6N8K_0061/1/82:89,
1/1/97:103
No text annotation
Not in a motif group
homologous
IL_5TBW_006
IL_88613.1
IL_6N8K_0071/1/123:124,
1/1/144:149
No text annotation
Not in a motif group
geometric
IL_5TBW_007
IL_19724.2
IL_6N8K_0081/1/125:127,
1/1/141:143
No text annotation
Not in a motif group
homologous
IL_5TBW_008
IL_95997.1
IL_6N8K_0091/1/163:165,
1/1/257:258
Single stack bend
Not in a motif group
homologous
IL_5TBW_009
IL_76488.2
IL_6N8K_0101/1/169:172,
1/1/246:253
No text annotation
Not in a motif group
IL_6N8K_0111/1/177:179,
1/1/237:241
Major groove platform with extra pair
Not in a motif group
homologous
IL_5TBW_011
IL_63450.2
IL_6N8K_0121/1/189:191,
1/1/204:205
No text annotation
Not in a motif group
homologous
IL_8C3A_013
IL_83039.13
IL_6N8K_0131/1/337:339,
1/3/25:26
No text annotation
Not in a motif group
homologous
IL_8C3A_014
IL_37497.2
IL_6N8K_0141/1/376:379,
1/1/390:403
No text annotation
Not in a motif group
geometric
IL_5TBW_014
IL_60992.6
IL_6N8K_0151/1/404:410,
1/3/13:19
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5TBW_015
IL_66414.6
IL_6N8K_0161/1/429:431,
1/1/628:630
No text annotation
Not in a motif group
homologous
IL_5TBW_016
IL_51629.2
IL_6N8K_0181/1/512:513,
1/1/577:579
Single bulged A
Not in a motif group
homologous
IL_5TBW_018
IL_37497.2
IL_6N8K_0191/1/517:525,
1/1/567:573
No text annotation
Not in a motif group
homologous
IL_5TBW_019
IL_23992.1
IL_6N8K_0201/1/531:538,
1/1/553:561
No text annotation
Not in a motif group
homologous
IL_5TBW_020
IL_07703.1
IL_6N8K_0211/1/668:670,
1/1/792:794
No text annotation
Not in a motif group
homologous
IL_5TBW_021
IL_95997.1
IL_6N8K_0221/1/680:684,
1/1/696:700
No text annotation
Not in a motif group
homologous
IL_5TBW_022
IL_74284.1
IL_6N8K_0231/1/725:728,
1/1/741:745
UAA/GAN
Not in a motif group
homologous
IL_5TBW_023
IL_07235.1
IL_6N8K_0241/1/752:753,
1/1/779:781
Single bulged A
Not in a motif group
homologous
IL_5TBW_024
IL_37497.2
IL_6N8K_0251/1/754:756,
1/1/775:778
No text annotation
Not in a motif group
geometric
IL_4E48_004
IL_95997.1
IL_6N8K_0271/1/803:805,
1/1/938:940
No text annotation
Not in a motif group
homologous
IL_8C3A_029
IL_95997.1
IL_6N8K_0281/1/805:809,
1/1/931:938
No text annotation
Not in a motif group
geometric
IL_5TBW_028
IL_17470.6
IL_6N8K_0341/1/969:970,
1/1/1111:1113
No text annotation
Not in a motif group
homologous
IL_8C3A_038
IL_76488.2
IL_6N8K_0351/1/977:982,
1/1/1101:1104
No text annotation
Not in a motif group
homologous
IL_8C3A_039
IL_59027.1
IL_6N8K_0361/1/983:985,
1/1/1099:1100
No text annotation
Not in a motif group
homologous
IL_8C3A_040
IL_00225.2
IL_6N8K_0411/1/1120:1122,
1/1/1136:1138
No text annotation
Not in a motif group
homologous
IL_5TBW_046
IL_95997.1
IL_6N8K_0421/1/1167:1171,
1/1/1328:1332
UAA/GAN
Not in a motif group
homologous
IL_5TBW_048
IL_89002.2
IL_6N8K_0431/1/1173:1182,
1/1/1324:1326
No text annotation
Not in a motif group
IL_6N8K_0441/1/1187:1194,
1/1/1314:1319
No text annotation
Not in a motif group
homologous
IL_5TBW_051
IL_27086.1
IL_6N8K_0451/1/1194:1205,
1/1/1299:1314
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_6N8K_0461/1/1207:1209,
1/1/1296:1297
No text annotation
Not in a motif group
homologous
IL_8C3A_056
IL_83039.13
IL_6N8K_0471/1/1218:1226,
1/1/1283:1287
Kink-turn
Not in a motif group
homologous
IL_5TBW_054
IL_90538.4
IL_6N8K_0501/1/1376:1378,
1/1/1428:1431
Isolated cWS basepair
Not in a motif group
homologous
IL_5TBW_057
IL_52767.2
IL_6N8K_0511/1/1385:1387,
1/1/1420:1421
Single bulged A
Not in a motif group
homologous
IL_5TBW_058
IL_37497.2
IL_6N8K_0521/1/1388:1395,
1/1/1415:1419
Kink-turn
Not in a motif group
homologous
IL_5TBW_059
IL_70923.2
IL_6N8K_0531/1/1398:1400,
1/1/1411:1412
Single bulged A
Not in a motif group
homologous
IL_5TBW_060
IL_37497.2
IL_6N8K_0541/1/1444:1450,
1/1/2354:2359
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_061
IL_76042.2
IL_6N8K_0821/1/2391:2394,
1/1/2986:2988
Major groove platform with extra pair
Not in a motif group
homologous
IL_5TBW_091
IL_63450.2
IL_6N8K_0951/1/2879:2881,
1/1/2943:2947
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5TBW_108
IL_90933.2
IL_6N8K_0961/1/2881:2882,
1/1/2940:2943
Multiple bulged bases
Not in a motif group
homologous
IL_5TBW_109
IL_71530.2
IL_6N8K_0971/1/2889:2891,
1/1/2912:2914
No text annotation
Not in a motif group
geometric
IL_4YHW_001
IL_95997.1
IL_6N8K_0981/1/2891:2892,
1/1/2909:2912
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5TBW_111
IL_95601.3
IL_6N8K_0991/1/2918:2920,
1/1/2926:2928
No text annotation
Not in a motif group
homologous
IL_5TBW_112
IL_95997.1
IL_6N8K_1011/1/3004:3007,
1/1/3139:3144
Double sheared
Not in a motif group
homologous
IL_5TBW_114
IL_09705.9
IL_6N8K_1021/1/3012:3014,
1/1/3040:3042
No text annotation
Not in a motif group
homologous
IL_5TBW_115
IL_95997.1
IL_6N8K_1031/1/3018:3025,
1/1/3030:3036
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_116
IL_04346.7
IL_6N8K_1041/1/3045:3051,
1/1/3091:3096
No text annotation
Not in a motif group
IL_6N8K_1051/1/3054:3059,
1/1/3084:3088
No text annotation
Not in a motif group
homologous
IL_8C3A_127
IL_17136.1
IL_6N8K_1061/1/3063:3064,
1/1/3077:3080
Multiple bulged bases
Not in a motif group
homologous
IL_5TBW_119
IL_71530.2
IL_6N8K_1071/1/3103:3107,
1/1/3127:3131
UAA/GAN
Not in a motif group
homologous
IL_5TBW_120
IL_89002.2
IL_6N8K_1081/1/3164:3166,
1/1/3284:3286
No text annotation
Not in a motif group
homologous
IL_8C3A_130
IL_95997.1
IL_6N8K_1101/1/3177:3179,
1/1/3210:3211
Single bulged A
Not in a motif group
homologous
IL_5TBW_123
IL_37497.2
IL_6N8K_1111/1/3179:3188,
1/1/3204:3210
No text annotation
Not in a motif group
geometric
IL_5TBW_124
IL_15174.1
IL_6N8K_1121/1/3193:3194,
1/1/3197:3199
Single bulged U
Not in a motif group
homologous
IL_5TBW_125
IL_83039.13
IL_6N8K_1131/1/3225:3229,
1/1/3258:3260
No text annotation
Not in a motif group
homologous
IL_5TBW_126
IL_19389.6
IL_6N8K_1141/1/3233:3235,
1/1/3252:3254
No text annotation
Not in a motif group
homologous
IL_5TBW_127
IL_95997.1
IL_6N8K_1151/1/3235:3238,
1/1/3249:3252
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4EYA_003
IL_30621.2
IL_6N8K_1161/1/3318:3320,
1/1/3387:3388
Single bulged U
Not in a motif group
homologous
IL_5TBW_130
IL_83039.13
IL_6N8K_1171/1/3324:3325,
1/1/3381:3383
Single bulged U
Not in a motif group
homologous
IL_5TBW_131
IL_83039.13
IL_6N8K_1181/1/3328:3330,
1/1/3373:3378
No text annotation
Not in a motif group
homologous
IL_8C3A_138
IL_90933.2
IL_6N8K_1191/1/3332:3337,
1/1/3367:3371
No text annotation
Not in a motif group
homologous
IL_5TBW_133
IL_83162.5
IL_6N8K_1201/1/3340:3342,
1/1/3363:3364
Single bulged U
Not in a motif group
geometric
IL_3WBM_001
IL_83039.13
IL_6N8K_1211/1/3342:3345,
1/1/3360:3363
No text annotation
Not in a motif group
homologous
IL_8C3A_141
IL_09705.9
IL_6N8K_1221/2/15:16,
1/2/63:65
Single bulged A
Not in a motif group
homologous
IL_5TBW_372
IL_37497.2
IL_6N8K_1231/2/21:27,
1/2/53:58
No text annotation
Not in a motif group
homologous
IL_5TBW_373
IL_10207.2
IL_6N8K_1241/2/28:29,
1/2/49:52
Minor groove platform
Not in a motif group
geometric
IL_5TBW_374
IL_63797.2
IL_6N8K_1251/2/29:30,
1/2/47:49
Single stack bend
Not in a motif group
homologous
IL_5TBW_375
IL_76488.2
IL_6N8K_1261/2/32:36,
1/2/41:45
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5TBW_376
IL_58103.6
IL_6N8K_1271/2/72:80,
1/2/100:106
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_377
IL_04346.7
IL_6N8K_1281/2/84:87,
1/2/94:96
No text annotation
Not in a motif group
homologous
IL_5TBW_378
IL_95997.1
IL_6N8K_1291/3/68:69,
1/3/89:91
Single bulged U
Not in a motif group
geometric
IL_5TBW_146
IL_83039.13

Problematic loops

#loop idProblemSequence
IL_6N8K_017No text annotation
IL_6N8K_026No text annotation
IL_6N8K_029Single bulged G
IL_6N8K_030Triple sheared
IL_6N8K_031Major groove platform with extra cWW
IL_6N8K_032Single bulged U
IL_6N8K_033No text annotation
IL_6N8K_037No text annotation
IL_6N8K_038No text annotation
IL_6N8K_039Tandem non-canonical cWW pairs
IL_6N8K_040Single bulged A
IL_6N8K_048No text annotation
IL_6N8K_049No text annotation
IL_6N8K_055No text annotation
IL_6N8K_056UAA/GAN
IL_6N8K_057Other IL
IL_6N8K_058Multiple bulged bases
IL_6N8K_059No text annotation
IL_6N8K_060No text annotation
IL_6N8K_061Single bulged C
IL_6N8K_062Single stack bend
IL_6N8K_063No text annotation
IL_6N8K_064No text annotation
IL_6N8K_065Kink-turn
IL_6N8K_066No text annotation
IL_6N8K_067Isolated tWW turn
IL_6N8K_068No text annotation
IL_6N8K_069Intercalated tWH
IL_6N8K_070tSH-tSH-tHH-tHS
IL_6N8K_071No text annotation
IL_6N8K_072No text annotation
IL_6N8K_073No text annotation
IL_6N8K_074Kink-turn related
IL_6N8K_075Major groove outside cWW, minor groove, intercalation pocket
IL_6N8K_076Major groove outside cWW, minor groove, intercalation pocket
IL_6N8K_077Single bulged U
IL_6N8K_078Major groove platform with extra pair
IL_6N8K_079No text annotation
IL_6N8K_080No text annotation
IL_6N8K_081No text annotation
IL_6N8K_083Minor groove platform with intercalation
IL_6N8K_084No text annotation
IL_6N8K_085Minor groove platform
IL_6N8K_086Triple sheared
IL_6N8K_087Single stack bend
IL_6N8K_088No text annotation
IL_6N8K_089No text annotation
IL_6N8K_090No text annotation
IL_6N8K_091Single bulged A
IL_6N8K_092No text annotation
IL_6N8K_093Tandem non-canonical cWW pairs
IL_6N8K_094No text annotation
IL_6N8K_100Single bulged A
IL_6N8K_109No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6N8K_0011/1/113:123,
1/1/149:158,
1/1/263:267
No text annotation
Not in a motif group
J3_6N8K_0021/1/369:376,
1/1/403:404,
1/3/19:20
No text annotation
Not in a motif group
homologous
J3_5TBW_002
NA
J3_6N8K_0031/1/502:503,
1/1/588:597,
1/1/606:611
No text annotation
Not in a motif group
homologous
J3_5TBW_003
NA
J3_6N8K_0141/1/2886:2889,
1/1/2914:2916,
1/1/2930:2936
No text annotation
Not in a motif group
J3_6N8K_0151/1/3298:3303,
1/1/3311:3318,
1/1/3388:3390
No text annotation
Not in a motif group
J3_6N8K_0161/2/9:14,
1/2/66:67,
1/2/111:112
No text annotation
Not in a motif group
homologous
J3_5TBW_045
NA

Problematic loops

#loop idProblemSequence
J3_6N8K_004No text annotation
J3_6N8K_005No text annotation
J3_6N8K_006No text annotation
J3_6N8K_007No text annotation
J3_6N8K_008No text annotation
J3_6N8K_009No text annotation
J3_6N8K_010No text annotation
J3_6N8K_011No text annotation
J3_6N8K_012No text annotation
J3_6N8K_013No text annotation

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