6OGF Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/1/59:68 | NA | NA |
2 | ➜ | 1/1/87:95 | NA | NA |
3 | ➜ | 1/1/123:128 | NA | NA |
4 | ➜ | 1/1/137:142 | NA | NA |
5 | ➜ | 1/1/158:168 | NA | NA |
6 | ➜ | 1/1/194:201 | NA | NA |
7 | ➜ | 1/1/225:230 | NA | NA |
8 | ➜ | 1/1/246:252 | NA | NA |
9 | ➜ | 1/1/305:312 | NA | NA |
10 | ➜ | 1/1/327:335 | NA | NA |
11 | ➜ | 1/1/382:392 | NA | NA |
12 | ➜ | 1/1/410:417 | NA | NA |
13 | ➜ | 1/1/462:467 | NA | NA |
14 | ➜ | 1/1/487:493 | NA | NA |
15 | ➜ | 1/1/545:548 | NA | NA |
16 | ➜ | 1/1/566:575 | NA | NA |
17 | ➜ | 1/1/611:617 | NA | NA |
18 | ➜ | 1/1/629:634 | NA | NA |
19 | ➜ | 1/1/640:648 | NA | NA |
20 | ➜ | 1/1/712:719 | NA | NA |
21 | ➜ | 1/1/744:753 | NA | NA |
22 | ➜ | 1/1/779:785 | NA | NA |
23 | ➜ | 1/1/826:831 | NA | NA |
24 | ➜ | 1/1/883:893 | NA | NA |
25 | ➜ | 1/1/955:962 | NA | NA |
26 | ➜ | 1/1/978:985 | NA | NA |
27 | ➜ | 1/1/1064:1074 | NA | NA |
28 | ➜ | 1/1/1092:1099 | NA | NA |
29 | ➜ | 1/1/1171:1178 | NA | NA |
30 | ➜ | 1/1/1222:1227 | NA | NA |
31 | ➜ | 1/1/1281:1289 | NA | NA |
32 | ➜ | 1/1/1324:1330 | NA | NA |
33 | ➜ | 1/1/1363:1368 | NA | NA |
34 | ➜ | 1/1/1389:1398 | NA | NA |
35 | ➜ | 1/1/1450:1461 | NA | NA |
36 | ➜ | 1/1/1492:1498 | NA | NA |
37 | ➜ | 1/1/1533:1538 | NA | NA |
38 | ➜ | 1/1/1565:1568 | NA | NA |
39 | ➜ | 1/1/1612:1619 | NA | NA |
40 | ➜ | 1/1/1630:1636 | NA | NA |
41 | ➜ | 1/1/1691:1696 | NA | NA |
42 | ➜ | 1/1/1727:1733 | NA | NA |
43 | ➜ | 1/1/1752:1756 | NA | NA |
44 | ➜ | 1/1/1777:1787 | NA | NA |
45 | ➜ | 1/1/1806:1811 | NA | NA |
46 | ➜ | 1/1/1868:1873 | NA | NA |
47 | ➜ | 1/1/1910:1920 | NA | NA |
48 | ➜ | 1/1/1949:1957 | NA | NA |
49 | ➜ | 1/1/2027:2036 | NA | NA |
50 | ➜ | 1/1/2141:2150 | NA | NA |
51 | ➜ | 1/1/2209:2215 | NA | NA |
52 | ➜ | 1/1/2248:2256 | NA | NA |
53 | ➜ | 1/1/2264:2276 | NA | NA |
54 | ➜ | 1/1/2303:2313 | NA | NA |
55 | ➜ | 1/1/2324:2331 | NA | NA |
56 | ➜ | 1/1/2356:2361 | NA | NA |
57 | ➜ | 1/1/2374:2379 | NA | NA |
58 | ➜ | 1/1/2404:2413 | NA | NA |
59 | ➜ | 1/1/2471:2479 | NA | NA |
60 | ➜ | 1/1/2527:2536 | NA | NA |
61 | ➜ | 1/1/2551:2557 | NA | NA |
62 | ➜ | 1/1/2594:2599 | NA | NA |
63 | ➜ | 1/1/2658:2663 | NA | NA |
64 | ➜ | 1/1/2701:2706 | NA | NA |
65 | ➜ | 1/1/2745:2759 | NA | NA |
66 | ➜ | 1/1/2795:2801 | NA | NA |
67 | ➜ | 1/1/2819:2827 | NA | NA |
68 | ➜ | 1/1/2856:2861 | NA | NA |
69 | ➜ | 1/2/38:44 | NA | NA |
70 | ➜ | 1/2/86:90 | NA | NA |
71 | ➜ | 1/3/12:22 | NA | NA |
72 | ➜ | 1/3/75:95 | NA | NA |
73 | ➜ | 1/3/158:163 | NA | NA |
74 | ➜ | 1/3/186:191 | NA | NA |
75 | ➜ | 1/3/206:213 | NA | NA |
76 | ➜ | 1/3/259:267 | NA | NA |
77 | ➜ | 1/3/296:301 | NA | NA |
78 | ➜ | 1/3/320:333 | NA | NA |
79 | ➜ | 1/3/342:347 | NA | NA |
80 | ➜ | 1/3/379:384 | NA | NA |
81 | ➜ | 1/3/419:424 | NA | NA |
82 | ➜ | 1/3/462:470 | NA | NA |
83 | ➜ | 1/3/522:527 | NA | NA |
84 | ➜ | 1/3/617:623 | NA | NA |
85 | ➜ | 1/3/689:698 | NA | NA |
86 | ➜ | 1/3/726:731 | NA | NA |
87 | ➜ | 1/3/786:796 | NA | NA |
88 | ➜ | 1/3/840:846 | NA | NA |
89 | ➜ | 1/3/862:867 | NA | NA |
90 | ➜ | 1/3/897:902 | NA | NA |
91 | ➜ | 1/3/963:972 | NA | NA |
92 | ➜ | 1/3/1012:1017 | NA | NA |
93 | ➜ | 1/3/1076:1081 | NA | NA |
94 | ➜ | 1/3/1089:1096 | NA | NA |
95 | ➜ | 1/3/1134:1140 | NA | NA |
96 | ➜ | 1/3/1165:1171 | NA | NA |
97 | ➜ | 1/3/1265:1270 | NA | NA |
98 | ➜ | 1/3/1314:1323 | NA | NA |
99 | ➜ | 1/3/1356:1366 | NA | NA |
100 | ➜ | 1/3/1449:1454 | NA | NA |
101 | ➜ | 1/3/1515:1520 | NA | NA |
102 | ➜ | 1/5/13:22 | NA | NA |
103 | ➜ | 1/5/31:39 | NA | NA |
104 | ➜ | 1/5/53:61 | NA | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/1/24:30,1/1/510:516 | NA | NA |
2 | ➜ | 1/1/36:37,1/1/442:444 | NA | NA |
3 | ➜ | 1/1/43:44,1/1/434:436 | NA | NA |
4 | ➜ | 1/1/81:85,1/1/97:105 | NA | NA |
5 | ➜ | 1/1/183:184,1/1/212:214 | NA | NA |
6 | ➜ | 1/1/188:194,1/1/201:208 | NA | NA |
7 | ➜ | 1/1/239:245,1/1/253:258 | NA | NA |
8 | ➜ | 1/1/269:271,1/1/366:370 | NA | NA |
9 | ➜ | 1/1/274:281,1/1/359:363 | NA | NA |
10 | ➜ | 1/1/293:295,1/1/343:347 | NA | NA |
11 | ➜ | 1/1/481:484,1/1/496:509 | NA | NA |
12 | ➜ | 1/1/536:539,1/1/554:557 | NA | NA |
13 | ➜ | 1/1/564:566,1/1/575:577 | NA | NA |
14 | ➜ | 1/1/606:610,1/1/618:622 | NA | NA |
15 | ➜ | 1/1/672:674,1/1/806:808 | NA | NA |
16 | ➜ | 1/1/674:678,1/1/799:806 | NA | NA |
17 | ➜ | 1/1/697:698,1/1/763:765 | NA | NA |
18 | ➜ | 1/1/702:703,1/1/728:730 | NA | NA |
19 | ➜ | 1/1/703:707,1/1/724:728 | NA | NA |
20 | ➜ | 1/1/738:740,1/1/757:758 | NA | NA |
21 | ➜ | 1/1/775:777,1/1/787:791 | NA | NA |
22 | ➜ | 1/1/844:847,1/1/933:934 | NA | NA |
23 | ➜ | 1/1/847:848,1/1/930:933 | NA | NA |
24 | ➜ | 1/1/850:851,1/1/926:928 | NA | NA |
25 | ➜ | 1/1/856:862,1/1/915:921 | NA | NA |
26 | ➜ | 1/1/862:863,1/1/913:915 | NA | NA |
27 | ➜ | 1/1/864:868,1/1/909:912 | NA | NA |
28 | ➜ | 1/1/870:872,1/1/905:907 | NA | NA |
29 | ➜ | 1/1/875:879,1/1/898:902 | NA | NA |
30 | ➜ | 1/1/880:881,1/1/895:897 | NA | NA |
31 | ➜ | 1/1/994:996,1/1/1159:1160 | NA | NA |
32 | ➜ | 1/1/998:1002,1/1/1153:1157 | NA | NA |
33 | ➜ | 1/1/1004:1011,1/1/1150:1151 | NA | NA |
34 | ➜ | 1/1/1011:1013,1/1/1149:1150 | NA | NA |
35 | ➜ | 1/1/1018:1024,1/1/1140:1144 | NA | NA |
36 | ➜ | 1/1/1024:1030,1/1/1124:1140 | NA | NA |
37 | ➜ | 1/1/1031:1034,1/1/1121:1123 | NA | NA |
38 | ➜ | 1/1/1038:1041,1/1/1114:1117 | NA | NA |
39 | ➜ | 1/1/1043:1052,1/1/1107:1112 | NA | NA |
40 | ➜ | 1/1/1059:1062,1/1/1076:1079 | NA | NA |
41 | ➜ | 1/1/1087:1091,1/1/1100:1102 | NA | NA |
42 | ➜ | 1/1/1196:1198,1/1/1247:1250 | NA | NA |
43 | ➜ | 1/1/1202:1206,1/1/1240:1243 | NA | NA |
44 | ➜ | 1/1/1208:1215,1/1/1234:1238 | NA | NA |
45 | ➜ | 1/1/1262:1269,1/1/2011:2017 | NA | NA |
46 | ➜ | 1/1/1310:1313,1/1/1603:1604 | NA | NA |
47 | ➜ | 1/1/1319:1323,1/1/1331:1333 | NA | NA |
48 | ➜ | 1/1/1351:1355,1/1/1376:1380 | NA | NA |
49 | ➜ | 1/1/1357:1361,1/1/1370:1374 | NA | NA |
50 | ➜ | 1/1/1415:1416,1/1/1582:1587 | NA | NA |
51 | ➜ | 1/1/1417:1421,1/1/1577:1581 | NA | NA |
52 | ➜ | 1/1/1432:1435,1/1/1557:1561 | NA | NA |
53 | ➜ | 1/1/1437:1440,1/1/1551:1555 | NA | NA |
54 | ➜ | 1/1/1468:1472,1/1/1519:1524 | NA | NA |
55 | ➜ | 1/1/1474:1478,1/1/1513:1517 | NA | NA |
56 | ➜ | 1/1/1481:1482,1/1/1507:1510 | NA | NA |
57 | ➜ | 1/1/1489:1491,1/1/1499:1500 | NA | NA |
58 | ➜ | 1/1/1526:1529,1/1/1542:1546 | NA | NA |
59 | ➜ | 1/1/1651:1656,1/1/2004:2006 | NA | NA |
60 | ➜ | 1/1/1663:1665,1/1/1995:1997 | NA | NA |
61 | ➜ | 1/1/1666:1669,1/1/1993:1994 | NA | NA |
62 | ➜ | 1/1/1669:1674,1/1/1990:1993 | NA | NA |
63 | ➜ | 1/1/1686:1691,1/1/1696:1702 | NA | NA |
64 | ➜ | 1/1/1712:1718,1/1/1742:1746 | NA | NA |
65 | ➜ | 1/1/1719:1726,1/1/1734:1741 | NA | NA |
66 | ➜ | 1/1/1770:1771,1/1/1980:1982 | NA | NA |
67 | ➜ | 1/1/1798:1804,1/1/1813:1821 | NA | NA |
68 | ➜ | 1/1/1837:1840,1/1/1902:1903 | NA | NA |
69 | ➜ | 1/1/1841:1842,1/1/1898:1901 | NA | NA |
70 | ➜ | 1/1/1846:1849,1/1/1893:1894 | NA | NA |
71 | ➜ | 1/1/1864:1867,1/1/1874:1878 | NA | NA |
72 | ➜ | 1/1/1933:1934,1/1/1964:1967 | NA | NA |
73 | ➜ | 1/1/1934:1945,1/1/1961:1964 | NA | NA |
74 | ➜ | 1/1/2050:2052,1/1/2617:2618 | NA | NA |
75 | ➜ | 1/1/2054:2056,1/1/2612:2615 | NA | NA |
76 | ➜ | 1/1/2067:2069,1/1/2442:2443 | NA | NA |
77 | ➜ | 1/1/2070:2071,1/1/2438:2441 | NA | NA |
78 | ➜ | 1/1/2081:2083,1/1/2236:2239 | NA | NA |
79 | ➜ | 1/1/2085:2087,1/1/2232:2234 | NA | NA |
80 | ➜ | 1/1/2103:2105,1/1/2184:2186 | NA | NA |
81 | ➜ | 1/1/2105:2121,1/1/2177:2184 | NA | NA |
82 | ➜ | 1/1/2202:2204,1/1/2220:2221 | NA | NA |
83 | ➜ | 1/1/2350:2353,1/1/2364:2367 | NA | NA |
84 | ➜ | 1/1/2401:2403,1/1/2414:2415 | NA | NA |
85 | ➜ | 1/1/2453:2454,1/1/2498:2500 | NA | NA |
86 | ➜ | 1/1/2454:2455,1/1/2496:2498 | NA | NA |
87 | ➜ | 1/1/2456:2459,1/1/2493:2495 | NA | NA |
88 | ➜ | 1/1/2459:2462,1/1/2488:2493 | NA | NA |
89 | ➜ | 1/1/2466:2470,1/1/2480:2484 | NA | NA |
90 | ➜ | 1/1/2507:2509,1/1/2579:2582 | NA | NA |
91 | ➜ | 1/1/2510:2512,1/1/2574:2578 | NA | NA |
92 | ➜ | 1/1/2512:2513,1/1/2571:2574 | NA | NA |
93 | ➜ | 1/1/2522:2523,1/1/2540:2543 | NA | NA |
94 | ➜ | 1/1/2589:2591,1/1/2603:2605 | NA | NA |
95 | ➜ | 1/1/2591:2592,1/1/2601:2603 | NA | NA |
96 | ➜ | 1/1/2636:2640,1/1/2774:2782 | NA | NA |
97 | ➜ | 1/1/2652:2658,1/1/2663:2668 | NA | NA |
98 | ➜ | 1/1/2680:2684,1/1/2725:2727 | NA | NA |
99 | ➜ | 1/1/2687:2691,1/1/2718:2722 | NA | NA |
100 | ➜ | 1/1/2695:2696,1/1/2711:2714 | NA | NA |
101 | ➜ | 1/1/2737:2742,1/1/2762:2767 | NA | NA |
102 | ➜ | 1/1/2806:2811,1/1/2889:2892 | NA | NA |
103 | ➜ | 1/1/2838:2839,1/1/2878:2880 | NA | NA |
104 | ➜ | 1/1/2843:2846,1/1/2870:2874 | NA | NA |
105 | ➜ | 1/1/2847:2852,1/1/2865:2869 | NA | NA |
106 | ➜ | 1/2/17:18,1/2/65:67 | NA | NA |
107 | ➜ | 1/2/23:28,1/2/56:60 | NA | NA |
108 | ➜ | 1/2/30:31,1/2/51:54 | NA | NA |
109 | ➜ | 1/2/34:38,1/2/44:48 | NA | NA |
110 | ➜ | 1/2/71:79,1/2/97:105 | NA | NA |
111 | ➜ | 1/3/30:32,1/3/552:553 | NA | NA |
112 | ➜ | 1/3/44:45,1/3/396:398 | NA | NA |
113 | ➜ | 1/3/47:52,1/3/359:361 | NA | NA |
114 | ➜ | 1/3/54:56,1/3/356:357 | NA | NA |
115 | ➜ | 1/3/63:66,1/3/103:104 | NA | NA |
116 | ➜ | 1/3/67:69,1/3/99:102 | NA | NA |
117 | ➜ | 1/3/70:73,1/3/97:98 | NA | NA |
118 | ➜ | 1/3/128:131,1/3/231:233 | NA | NA |
119 | ➜ | 1/3/132:136,1/3/227:230 | NA | NA |
120 | ➜ | 1/3/144:146,1/3/176:178 | NA | NA |
121 | ➜ | 1/3/147:153,1/3/168:175 | NA | NA |
122 | ➜ | 1/3/203:206,1/3/213:214 | NA | NA |
123 | ➜ | 1/3/242:247,1/3/277:284 | NA | NA |
124 | ➜ | 1/3/248:252,1/3/274:276 | NA | NA |
125 | ➜ | 1/3/292:293,1/3/304:308 | NA | NA |
126 | ➜ | 1/3/367:369,1/3/392:393 | NA | NA |
127 | ➜ | 1/3/371:375,1/3/389:390 | NA | NA |
128 | ➜ | 1/3/375:376,1/3/387:389 | NA | NA |
129 | ➜ | 1/3/409:416,1/3/427:433 | NA | NA |
130 | ➜ | 1/3/440:442,1/3/492:497 | NA | NA |
131 | ➜ | 1/3/446:450,1/3/483:488 | NA | NA |
132 | ➜ | 1/3/450:455,1/3/477:483 | NA | NA |
133 | ➜ | 1/3/504:511,1/3/540:541 | NA | NA |
134 | ➜ | 1/3/515:521,1/3/528:536 | NA | NA |
135 | ➜ | 1/3/569:575,1/3/880:881 | NA | NA |
136 | ➜ | 1/3/580:584,1/3/757:761 | NA | NA |
137 | ➜ | 1/3/594:596,1/3/644:645 | NA | NA |
138 | ➜ | 1/3/597:598,1/3/640:643 | NA | NA |
139 | ➜ | 1/3/605:612,1/3/628:633 | NA | NA |
140 | ➜ | 1/3/654:655,1/3/751:754 | NA | NA |
141 | ➜ | 1/3/659:660,1/3/745:747 | NA | NA |
142 | ➜ | 1/3/662:666,1/3/740:743 | NA | NA |
143 | ➜ | 1/3/673:677,1/3/713:717 | NA | NA |
144 | ➜ | 1/3/684:688,1/3/699:706 | NA | NA |
145 | ➜ | 1/3/774:778,1/3/804:805 | NA | NA |
146 | ➜ | 1/3/779:783,1/3/799:803 | NA | NA |
147 | ➜ | 1/3/887:895,1/3/904:910 | NA | NA |
148 | ➜ | 1/3/922:923,1/3/1393:1395 | NA | NA |
149 | ➜ | 1/3/924:927,1/3/1390:1392 | NA | NA |
150 | ➜ | 1/3/933:935,1/3/1380:1384 | NA | NA |
151 | ➜ | 1/3/953:954,1/3/1226:1228 | NA | NA |
152 | ➜ | 1/3/993:997,1/3/1044:1045 | NA | NA |
153 | ➜ | 1/3/998:999,1/3/1041:1043 | NA | NA |
154 | ➜ | 1/3/1003:1006,1/3/1023:1037 | NA | NA |
155 | ➜ | 1/3/1048:1050,1/3/1208:1209 | NA | NA |
156 | ➜ | 1/3/1051:1056,1/3/1204:1207 | NA | NA |
157 | ➜ | 1/3/1057:1059,1/3/1198:1203 | NA | NA |
158 | ➜ | 1/3/1060:1061,1/3/1195:1197 | NA | NA |
159 | ➜ | 1/3/1061:1063,1/3/1193:1195 | NA | NA |
160 | ➜ | 1/3/1124:1128,1/3/1144:1149 | NA | NA |
161 | ➜ | 1/3/1129:1132,1/3/1142:1143 | NA | NA |
162 | ➜ | 1/3/1158:1161,1/3/1175:1181 | NA | NA |
163 | ➜ | 1/3/1246:1253,1/3/1284:1291 | NA | NA |
164 | ➜ | 1/3/1255:1258,1/3/1277:1282 | NA | NA |
165 | ➜ | 1/3/1259:1263,1/3/1272:1276 | NA | NA |
166 | ➜ | 1/3/1303:1308,1/3/1329:1334 | NA | NA |
167 | ➜ | 1/3/1399:1401,1/3/1501:1504 | NA | NA |
168 | ➜ | 1/3/1401:1404,1/3/1497:1501 | NA | NA |
169 | ➜ | 1/3/1405:1407,1/3/1494:1496 | NA | NA |
170 | ➜ | 1/3/1407:1409,1/3/1491:1494 | NA | NA |
171 | ➜ | 1/3/1412:1414,1/3/1486:1488 | NA | NA |
172 | ➜ | 1/3/1416:1419,1/3/1481:1484 | NA | NA |
173 | ➜ | 1/3/1430:1435,1/3/1466:1470 | NA | NA |
174 | ➜ | 1/3/1440:1442,1/3/1460:1461 | NA | NA |
175 | ➜ | 1/3/1444:1448,1/3/1455:1458 | NA | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/1/30:31,1/1/474:481,1/1/509:510 | NA | NA |
2 | ➜ | 1/1/56:57,1/1/70:76,1/1/110:114 | NA | NA |
3 | ➜ | 1/1/683:689,1/1/773:775,1/1/791:794 | NA | NA |
4 | ➜ | 1/1/698:700,1/1/732:736,1/1/760:763 | NA | NA |
5 | ➜ | 1/1/1055:1057,1/1/1081:1087,1/1/1102:1104 | NA | NA |
6 | ➜ | 1/1/1298:1303,1/1/1625:1627,1/1/1639:1642 | NA | NA |
7 | ➜ | 1/1/1306:1309,1/1/1605:1611,1/1/1620:1622 | NA | NA |
8 | ➜ | 1/1/1344:1349,1/1/1382:1385,1/1/1402:1403 | NA | NA |
9 | ➜ | 1/1/2091:2093,1/1/2196:2200,1/1/2223:2228 | NA | NA |
10 | ➜ | 1/1/2295:2299,1/1/2317:2323,1/1/2332:2337 | NA | NA |
11 | ➜ | 1/1/2517:2520,1/1/2545:2547,1/1/2561:2567 | NA | NA |
12 | ➜ | 1/1/2789:2792,1/1/2804:2806,1/1/2892:2894 | NA | NA |
13 | ➜ | 1/1/2812:2815,1/1/2831:2836,1/1/2882:2888 | NA | NA |
14 | ➜ | 1/2/10:16,1/2/68:70,1/2/106:110 | NA | NA |
15 | ➜ | 1/3/46:47,1/3/361:367,1/3/393:395 | NA | NA |
16 | ➜ | 1/3/586:588,1/3/651:654,1/3/754:755 | NA | NA |
17 | ➜ | 1/3/672:673,1/3/717:725,1/3/732:734 | NA | NA |
18 | ➜ | 1/3/826:829,1/3/857:861,1/3/868:874 | NA | NA |
19 | ➜ | 1/3/943:946,1/3/1235:1237,1/3/1337:1340 | NA | NA |
20 | ➜ | 1/3/955:962,1/3/973:984,1/3/1221:1225 | NA | NA |
21 | ➜ | 1/3/990:993,1/3/1045:1047,1/3/1210:1215 | NA | NA |
22 | ➜ | 1/3/1063:1068,1/3/1107:1113,1/3/1187:1193 | NA | NA |
23 | ➜ | 1/3/1073:1074,1/3/1083:1087,1/3/1098:1102 | NA | NA |
24 | ➜ | 1/3/1116:1118,1/3/1155:1158,1/3/1181:1184 | NA | NA |
25 | ➜ | 1/3/1237:1241,1/3/1296:1303,1/3/1334:1337 | NA | NA |
Problematic loops
No problematic loops
Coloring options: