8BJQ Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8BJQ_001 | 1/1/38:45 | No text annotation Not in a motif group | geometric HL_5TBW_001 HL_06192.2 | |
| HL_8BJQ_002 | 1/1/69:74 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_8BJQ_003 | 1/1/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_8BJQ_004 | 1/1/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_98426.1 | |
| HL_8BJQ_005 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_8BJQ_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_8C3A_006 HL_98984.2 | |
| HL_8BJQ_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_8BJQ_008 | 1/1/278:287 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_8BJQ_009 | 1/1/303:312 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.2 | |
| HL_8BJQ_010 | 1/1/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_8BJQ_011 | 1/1/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_8BJQ_012 | 1/1/543:548 | No text annotation Not in a motif group | homologous HL_5TBW_012 HL_86373.2 | |
| HL_8BJQ_013 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_8BJQ_014 | 1/1/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_8BJQ_015 | 1/1/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_8BJQ_016 | 1/1/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_8BJQ_017 | 1/1/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_8BJQ_018 | 1/1/763:768 | No text annotation Not in a motif group | geometric HL_5TBW_018 HL_34168.2 | |
| HL_8BJQ_019 | 1/1/844:849 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_8BJQ_020 | 1/1/876:885 | No text annotation Not in a motif group | homologous HL_8C3A_020 HL_39334.6 | |
| HL_8BJQ_021 | 1/1/910:918 | No text annotation Not in a motif group | homologous HL_8C3A_021 HL_33817.1 | |
| HL_8BJQ_022 | 1/1/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_8BJQ_023 | 1/1/1022:1030 | No text annotation Not in a motif group | geometric HL_3RG5_006 HL_49288.1 | |
| HL_8BJQ_024 | 1/1/1076:1083 | No text annotation Not in a motif group | homologous HL_5TBW_024 HL_71554.2 | |
| HL_8BJQ_025 | 1/1/1126:1132 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_42097.1 | |
| HL_8BJQ_026 | 1/1/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_8BJQ_027 | 1/1/1239:1249 | No text annotation Not in a motif group | homologous HL_5TBW_027 HL_07145.1 | |
| HL_8BJQ_028 | 1/1/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_8BJQ_029 | 1/1/1347:1357 | No text annotation Not in a motif group | homologous HL_5TBW_029 HL_89098.1 | |
| HL_8BJQ_030 | 1/1/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_8BJQ_031 | 1/1/1462:1470 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_8BJQ_032 | 1/1/1506:1512 | No text annotation Not in a motif group | homologous HL_8C3A_032 HL_46680.1 | |
| HL_8BJQ_033 | 1/1/1544:1549 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_8BJQ_034 | 1/1/1566:1572 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_8BJQ_035 | 1/1/1599:1608 | No text annotation Not in a motif group | homologous HL_8C3A_035 HL_69023.2 | |
| HL_8BJQ_036 | 1/1/1634:1639 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.1 | |
| HL_8BJQ_037 | 1/1/1680:1688 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_60812.1 | |
| HL_8BJQ_038 | 1/1/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_8BJQ_039 | 1/1/1759:1766 | No text annotation Not in a motif group | ||
| HL_8BJQ_040 | 1/1/1792:1796 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_8BJQ_041 | 1/1/1844:1851 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_8BJQ_042 | 1/1/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_8BJQ_043 | 1/1/1923:1928 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_8BJQ_044 | 1/1/1999:2022 | No text annotation Not in a motif group | ||
| HL_8BJQ_045 | 1/1/2110:2114 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_8BJQ_046 | 1/1/2135:2145 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.5 | |
| HL_8BJQ_047 | 1/1/2164:2170 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_8BJQ_048 | 1/1/2220:2225 | No text annotation Not in a motif group | homologous HL_8C3A_048 HL_42097.1 | |
| HL_8BJQ_049 | 1/1/2253:2263 | No text annotation Not in a motif group | homologous HL_8C3A_049 HL_71924.2 | |
| HL_8BJQ_050 | 1/1/2292:2300 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_8BJQ_051 | 1/1/2369:2378 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_8BJQ_053 | 1/1/2535:2544 | No text annotation Not in a motif group | ||
| HL_8BJQ_054 | 1/1/2568:2573 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_8BJQ_055 | 1/1/2616:2624 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_8BJQ_056 | 1/1/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_8BJQ_057 | 1/1/2673:2681 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_8BJQ_058 | 1/1/2693:2700 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.2 | |
| HL_8BJQ_059 | 1/1/2724:2732 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_8BJQ_060 | 1/1/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_8BJQ_061 | 1/1/2776:2784 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.1 | |
| HL_8BJQ_062 | 1/1/2840:2848 | No text annotation Not in a motif group | homologous HL_8C3A_062 HL_06192.2 | |
| HL_8BJQ_063 | 1/1/2897:2904 | No text annotation Not in a motif group | homologous HL_8C3A_063 HL_88526.2 | |
| HL_8BJQ_064 | 1/1/2920:2926 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_8BJQ_065 | 1/1/2963:2968 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_42097.1 | |
| HL_8BJQ_066 | 1/1/3025:3030 | No text annotation Not in a motif group | homologous HL_8C3A_066 HL_42097.1 | |
| HL_8BJQ_067 | 1/1/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_8BJQ_068 | 1/1/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_8BJQ_069 | 1/1/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_8BJQ_070 | 1/1/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_8BJQ_071 | 1/1/3303:3311 | No text annotation Not in a motif group | homologous HL_5TBW_070 HL_27930.1 | |
| HL_8BJQ_072 | 1/1/3350:3353 | No text annotation Not in a motif group | geometric HL_5F9R_002 HL_38927.2 | |
| HL_8BJQ_073 | 1/C3/69:89 | No text annotation Not in a motif group | ||
| HL_8BJQ_074 | 1/C3/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_8BJQ_075 | 1/C3/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_8BJQ_076 | 1/C4/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_8BJQ_077 | 1/C4/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8BJQ_052 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8BJQ_001 | 1/1/3:4, 1/C3/155:156 | No text annotation Not in a motif group | ||
| IL_8BJQ_002 | 1/1/7:8, 1/C3/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_8BJQ_003 | 1/1/13:15, 1/C3/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_8BJQ_004 | 1/1/27:28, 1/1/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_8BJQ_005 | 1/1/31:38, 1/1/45:53 | No text annotation Not in a motif group | homologous IL_8C3A_005 IL_35728.2 | |
| IL_8BJQ_006 | 1/1/82:89, 1/1/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_8BJQ_007 | 1/1/123:124, 1/1/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_8BJQ_008 | 1/1/125:127, 1/1/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_8BJQ_009 | 1/1/163:165, 1/1/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_8BJQ_010 | 1/1/169:170, 1/1/248:253 | No text annotation Not in a motif group | homologous IL_5TBW_010 IL_74684.1 | |
| IL_8BJQ_011 | 1/1/177:178, 1/1/238:241 | Major groove platform Not in a motif group | geometric IL_5J7L_320 IL_27635.1 | |
| IL_8BJQ_012 | 1/1/189:191, 1/1/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_8BJQ_013 | 1/1/337:339, 1/C3/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_8BJQ_014 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_8BJQ_015 | 1/1/404:410, 1/C3/13:19 | No text annotation Not in a motif group | homologous IL_8C3A_016 IL_66414.6 | |
| IL_8BJQ_016 | 1/1/429:431, 1/1/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_8BJQ_018 | 1/1/512:513, 1/1/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_8BJQ_019 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_8BJQ_020 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_8BJQ_021 | 1/1/668:670, 1/1/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_8BJQ_022 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_8BJQ_023 | 1/1/725:728, 1/1/741:745 | No text annotation Not in a motif group | homologous IL_8C3A_025 IL_07235.1 | |
| IL_8BJQ_024 | 1/1/752:753, 1/1/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.2 | |
| IL_8BJQ_025 | 1/1/755:756, 1/1/775:777 | No text annotation Not in a motif group | homologous IL_8C3A_027 IL_83039.13 | |
| IL_8BJQ_026 | 1/1/758:763, 1/1/768:773 | No text annotation Not in a motif group | homologous IL_8C3A_028 IL_19954.2 | |
| IL_8BJQ_027 | 1/1/803:805, 1/1/938:940 | No text annotation Not in a motif group | homologous IL_8C3A_029 IL_95997.1 | |
| IL_8BJQ_028 | 1/1/805:809, 1/1/931:938 | No text annotation Not in a motif group | homologous IL_8C3A_030 IL_17470.6 | |
| IL_8BJQ_029 | 1/1/833:834, 1/1/859:861 | Single bulged G Not in a motif group | geometric IL_7A0S_017 IL_00225.2 | |
| IL_8BJQ_030 | 1/1/834:838, 1/1/855:859 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.8 | |
| IL_8BJQ_031 | 1/1/869:872, 1/1/888:890 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_8BJQ_032 | 1/1/873:875, 1/1/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_8BJQ_033 | 1/1/907:909, 1/1/919:923 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_8BJQ_034 | 1/1/954:956, 1/1/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_8BJQ_035 | 1/1/969:970, 1/1/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_8BJQ_036 | 1/1/977:982, 1/1/1101:1104 | No text annotation Not in a motif group | ||
| IL_8BJQ_037 | 1/1/983:985, 1/1/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_8BJQ_038 | 1/1/991:997, 1/1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5TBW_038 IL_93830.3 | |
| IL_8BJQ_039 | 1/1/997:998, 1/1/1050:1052 | No text annotation Not in a motif group | homologous IL_8C3A_042 IL_42622.2 | |
| IL_8BJQ_040 | 1/1/999:1004, 1/1/1046:1049 | No text annotation Not in a motif group | homologous IL_8C3A_043 IL_02509.1 | |
| IL_8BJQ_041 | 1/1/1006:1009, 1/1/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_8BJQ_042 | 1/1/1009:1011, 1/1/1039:1041 | No text annotation Not in a motif group | homologous IL_5TBW_042 IL_95997.1 | |
| IL_8BJQ_043 | 1/1/1013:1018, 1/1/1034:1037 | Other IL Not in a motif group | homologous IL_5TBW_043 IL_71110.1 | |
| IL_8BJQ_044 | 1/1/1069:1071, 1/1/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_95997.1 | |
| IL_8BJQ_045 | 1/1/1074:1076, 1/1/1083:1084 | Single bulged A Not in a motif group | geometric IL_5TBW_045 IL_37497.2 | |
| IL_8BJQ_046 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_8BJQ_047 | 1/1/1167:1171, 1/1/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_8BJQ_048 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.7 | |
| IL_8BJQ_049 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U Not in a motif group | geometric IL_7A0S_035 IL_83039.13 | |
| IL_8BJQ_050 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_8BJQ_051 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_8BJQ_052 | 1/1/1207:1209, 1/1/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_8BJQ_053 | 1/1/1218:1226, 1/1/1283:1287 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.4 | |
| IL_8BJQ_054 | 1/1/1233:1238, 1/1/1250:1255 | No text annotation Not in a motif group | ||
| IL_8BJQ_055 | 1/1/1262:1266, 1/1/1275:1277 | Major groove platform with extra cWW Not in a motif group | geometric IL_5D8H_003 IL_05564.2 | |
| IL_8BJQ_056 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_8BJQ_057 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_8BJQ_058 | 1/1/1388:1395, 1/1/1415:1419 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.2 | |
| IL_8BJQ_059 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_8BJQ_060 | 1/1/1444:1450, 1/1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_8BJQ_061 | 1/1/1500:1505, 1/1/1513:1516 | No text annotation Not in a motif group | homologous IL_5TBW_062 IL_93630.2 | |
| IL_8BJQ_062 | 1/1/1532:1536, 1/1/1585:1590 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_8BJQ_063 | 1/1/1563:1566, 1/1/1572:1576 | No text annotation Not in a motif group | ||
| IL_8BJQ_064 | 1/1/1618:1621, 1/1/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_8BJQ_065 | 1/1/1623:1625, 1/1/1818:1822 | No text annotation Not in a motif group | homologous IL_8C3A_071 IL_82068.2 | |
| IL_8BJQ_066 | 1/1/1627:1631, 1/1/1811:1816 | No text annotation Not in a motif group | homologous IL_8C3A_072 IL_48431.1 | |
| IL_8BJQ_067 | 1/1/1645:1649, 1/1/1806:1810 | No text annotation Not in a motif group | homologous IL_8C3A_073 IL_56467.8 | |
| IL_8BJQ_068 | 1/1/1661:1663, 1/1/1786:1788 | No text annotation Not in a motif group | homologous IL_8C3A_074 IL_95997.1 | |
| IL_8BJQ_069 | 1/1/1669:1670, 1/1/1778:1780 | No text annotation Not in a motif group | homologous IL_8C3A_075 IL_61258.12 | |
| IL_8BJQ_070 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_8BJQ_071 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation Not in a motif group | homologous IL_8C3A_077 IL_69313.1 | |
| IL_8BJQ_072 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation Not in a motif group | homologous IL_5TBW_072 IL_39753.1 | |
| IL_8BJQ_073 | 1/1/1711:1717, 1/1/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_8BJQ_074 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation Not in a motif group | homologous IL_8C3A_080 IL_49460.2 | |
| IL_8BJQ_075 | 1/1/1895:1897, 1/1/2338:2340 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_8BJQ_076 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_8BJQ_077 | 1/1/1901:1906, 1/1/2333:2336 | No text annotation Not in a motif group | homologous IL_8C3A_083 IL_82842.2 | |
| IL_8BJQ_078 | 1/1/1918:1923, 1/1/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_8BJQ_079 | 1/1/1940:1942, 1/1/2106:2108 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_8BJQ_080 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_8BJQ_081 | 1/1/1952:1954, 1/1/2087:2094 | No text annotation Not in a motif group | ||
| IL_8BJQ_082 | 1/1/1961:1966, 1/1/2057:2080 | No text annotation Not in a motif group | ||
| IL_8BJQ_083 | 1/1/1966:1968, 1/1/2054:2057 | No text annotation Not in a motif group | ||
| IL_8BJQ_084 | 1/1/1988:1991, 1/1/2030:2033 | tSH-tHW Not in a motif group | geometric IL_5UNE_005 IL_21270.1 | |
| IL_8BJQ_085 | 1/1/1994:1996, 1/1/2025:2027 | Isolated cWH basepair Not in a motif group | geometric IL_1M5K_004 IL_95997.1 | |
| IL_8BJQ_086 | 1/1/2128:2129, 1/1/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_8BJQ_087 | 1/1/2156:2161, 1/1/2173:2180 | No text annotation Not in a motif group | homologous IL_8C3A_088 IL_64509.1 | |
| IL_8BJQ_088 | 1/1/2196:2199, 1/1/2245:2246 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_8BJQ_089 | 1/1/2200:2201, 1/1/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_8BJQ_090 | 1/1/2204:2206, 1/1/2237:2238 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_8BJQ_091 | 1/1/2206:2210, 1/1/2235:2237 | No text annotation Not in a motif group | homologous IL_8C3A_092 IL_65006.1 | |
| IL_8BJQ_092 | 1/1/2211:2217, 1/1/2228:2234 | No text annotation Not in a motif group | homologous IL_8C3A_093 IL_36973.6 | |
| IL_8BJQ_093 | 1/1/2276:2277, 1/1/2307:2310 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_59677.2 | |
| IL_8BJQ_094 | 1/1/2277:2288, 1/1/2304:2307 | No text annotation Not in a motif group | homologous IL_8C3A_095 IL_81589.2 | |
| IL_8BJQ_095 | 1/1/2391:2394, 1/1/2986:2988 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_8BJQ_096 | 1/1/2396:2398, 1/1/2981:2984 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_8BJQ_097 | 1/1/2409:2411, 1/1/2811:2812 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.13 | |
| IL_8BJQ_098 | 1/1/2412:2413, 1/1/2807:2810 | No text annotation Not in a motif group | homologous IL_8C3A_099 IL_42622.2 | |
| IL_8BJQ_099 | 1/1/2423:2425, 1/1/2604:2607 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_8BJQ_100 | 1/1/2444:2445, 1/1/2501:2503 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_76488.2 | |
| IL_8BJQ_101 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_8BJQ_102 | 1/1/2614:2615, 1/1/2625:2627 | No text annotation Not in a motif group | homologous IL_8C3A_107 IL_69996.1 | |
| IL_8BJQ_103 | 1/1/2666:2668, 1/1/2686:2690 | No text annotation Not in a motif group | homologous IL_8C3A_108 IL_38958.7 | |
| IL_8BJQ_104 | 1/1/2718:2721, 1/1/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_8BJQ_105 | 1/1/2770:2773, 1/1/2787:2788 | No text annotation Not in a motif group | homologous IL_8C3A_110 IL_76488.2 | |
| IL_8BJQ_106 | 1/1/2823:2824, 1/1/2865:2867 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.1 | |
| IL_8BJQ_107 | 1/1/2824:2826, 1/1/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_8BJQ_108 | 1/1/2826:2828, 1/1/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_8BJQ_109 | 1/1/2828:2830, 1/1/2858:2862 | No text annotation Not in a motif group | homologous IL_8C3A_113 IL_92788.2 | |
| IL_8BJQ_110 | 1/1/2835:2839, 1/1/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_8BJQ_111 | 1/1/2876:2877, 1/1/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_8BJQ_112 | 1/1/2879:2881, 1/1/2943:2947 | No text annotation Not in a motif group | homologous IL_8C3A_116 IL_90933.2 | |
| IL_8BJQ_113 | 1/1/2881:2882, 1/1/2940:2943 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_8BJQ_114 | 1/1/2889:2891, 1/1/2912:2914 | No text annotation Not in a motif group | homologous IL_8C3A_118 IL_51629.2 | |
| IL_8BJQ_115 | 1/1/2891:2892, 1/1/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.3 | |
| IL_8BJQ_116 | 1/1/2918:2920, 1/1/2926:2928 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_8BJQ_117 | 1/1/2960:2961, 1/1/2970:2972 | Single bulged A Not in a motif group | geometric IL_2VPL_002 IL_37497.2 | |
| IL_8BJQ_118 | 1/1/3004:3007, 1/1/3139:3144 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.9 | |
| IL_8BJQ_119 | 1/1/3012:3014, 1/1/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_8BJQ_120 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_8BJQ_121 | 1/1/3047:3051, 1/1/3091:3094 | No text annotation Not in a motif group | homologous IL_8C3A_126 IL_37712.2 | |
| IL_8BJQ_122 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_8BJQ_123 | 1/1/3063:3064, 1/1/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_8BJQ_124 | 1/1/3103:3107, 1/1/3127:3131 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.2 | |
| IL_8BJQ_125 | 1/1/3164:3166, 1/1/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_8BJQ_126 | 1/1/3168:3170, 1/1/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_95997.1 | |
| IL_8BJQ_127 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | homologous IL_5TBW_123 IL_37497.2 | |
| IL_8BJQ_128 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_8BJQ_129 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_8BJQ_130 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_8BJQ_131 | 1/1/3233:3235, 1/1/3252:3254 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_8BJQ_132 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_128 IL_30621.2 | |
| IL_8BJQ_133 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_8BJQ_134 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U Not in a motif group | homologous IL_5TBW_130 IL_83039.13 | |
| IL_8BJQ_135 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_8BJQ_136 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_8BJQ_137 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.5 | |
| IL_8BJQ_138 | 1/1/3340:3342, 1/1/3363:3364 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.13 | |
| IL_8BJQ_139 | 1/1/3342:3345, 1/1/3360:3363 | tWS-tSW Not in a motif group | geometric IL_5TBW_135 IL_09705.9 | |
| IL_8BJQ_140 | 1/1/3349:3350, 1/1/3353:3356 | No text annotation Not in a motif group | homologous IL_8C3A_142 IL_59677.2 | |
| IL_8BJQ_141 | 1/C3/44:64, 1/C3/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_8BJQ_142 | 1/C3/64:66, 1/C3/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_82068.2 | |
| IL_8BJQ_143 | 1/C3/68:69, 1/C3/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.13 | |
| IL_8BJQ_144 | 1/C4/15:16, 1/C4/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_8BJQ_145 | 1/C4/21:27, 1/C4/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_8BJQ_146 | 1/C4/28:29, 1/C4/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_63797.2 | |
| IL_8BJQ_147 | 1/C4/29:30, 1/C4/47:49 | Single stack bend Not in a motif group | homologous IL_5TBW_375 IL_76488.2 | |
| IL_8BJQ_148 | 1/C4/32:36, 1/C4/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_8BJQ_149 | 1/C4/72:80, 1/C4/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_8BJQ_150 | 1/C4/84:87, 1/C4/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8BJQ_017 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8BJQ_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation Not in a motif group | ||
| J3_8BJQ_002 | 1/1/369:376, 1/1/403:404, 1/C3/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_8BJQ_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_8BJQ_004 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_8BJQ_005 | 1/1/828:831, 1/1/863:867, 1/1/892:897 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_8BJQ_006 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation Not in a motif group | homologous J3_5TBW_006 NA | |
| J3_8BJQ_007 | 1/1/1230:1232, 1/1/1256:1262, 1/1/1277:1279 | No text annotation Not in a motif group | homologous J3_8C3A_005 NA | |
| J3_8BJQ_008 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation Not in a motif group | homologous J3_8C3A_006 NA | |
| J3_8BJQ_009 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_8BJQ_010 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_8BJQ_011 | 1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1811 | No text annotation Not in a motif group | ||
| J3_8BJQ_012 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation Not in a motif group | homologous J3_8C3A_008 NA | |
| J3_8BJQ_013 | 1/1/2529:2532, 1/1/2547:2563, 1/1/2578:2581 | No text annotation Not in a motif group | ||
| J3_8BJQ_014 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_8BJQ_015 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_8BJQ_016 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_8BJQ_017 | 1/C4/9:14, 1/C4/66:67, 1/C4/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA |
Problematic loops
No problematic loops
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