Hairpin Loop Motif Atlas Release 1.16

#	Motif	Core Nts	Instances
1	HL_67042.15 View exemplar Basepair signature: cWW-tSH-R-R History status: Updated, 2 parents GNRA (56) GNRA variation (5)	6	318
2	HL_72498.15 View exemplar Basepair signature: cWW-tWH-R-R-R History status: Updated, 1 parent T-loop with 2 stacked bulged bases (29) T-loop with 2 bulged bases not stacked (2)	7	76
3	HL_39895.9 View exemplar Basepair signature: cWW-tSW-R History status: Updated, 1 parent UNCG (6) UNCG variation (1)	5	43
4	HL_18781.7 View exemplar Basepair signature: cWW-tSH-R-R-R-R History status: Updated, 1 parent GNRA wlth tandem sheared (2)	8	30
5	HL_91226.6 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Updated, 1 parent Pseudoknot geometry (1)	8	22
6	HL_97270.6 View exemplar Basepair signature: cWW-tWH-R-R-R History status: Updated, 1 parent T-loop with 2 stacked bulged bases (1) Other HL (1) T-loop with 1 bulged base (1)	7	21
7	HL_37020.1 View exemplar Basepair signature: cWW-R-R-R-R History status: > 2 parents	7	19
8	HL_46175.5 View exemplar Basepair signature: cWW-R-tSH-R-R-R-R History status: Updated, 1 parent	10	18
9	HL_74411.1 View exemplar Basepair signature: cWW-tSH-R-R History status: > 2 parents GNRA (4) GNRA variation (1)	6	17
10	HL_74465.6 View exemplar Basepair signature: cWW-bif-R-tSH-R-R History status: Exact match tRNA anticodon loop (7) Anticodon loop related (1)	9	16
11	HL_75759.7 View exemplar Basepair signature: cWW-R History status: Updated, 1 parent Mini UNCG (1)	4	16
12	HL_27271.4 View exemplar Basepair signature: cWW-R-R-R History status: Updated, 1 parent Pseudoknot geometry (2)	6	15
13	HL_33402.6 View exemplar Basepair signature: cWW-tSH-R-R-R History status: Updated, 1 parent	7	14
14	HL_56824.5 View exemplar Basepair signature: cWW-R-R History status: Updated, 1 parent	5	14
15	HL_68081.6 View exemplar Basepair signature: cWW-R-R-tWH-R-R History status: Updated, 1 parent T-loop with unstacked turn (2)	8	13
16	HL_82294.5 View exemplar Basepair signature: cWW-cWW-R-R History status: Updated, 1 parent T-loop related (1)	7	13
17	HL_48039.3 View exemplar Basepair signature: cWW-R History status: Updated, 1 parent	4	12
18	HL_80459.6 View exemplar Basepair signature: cWW-R-R History status: Updated, 1 parent	5	11
19	HL_11547.5 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Updated, 2 parents	8	11
20	HL_34027.5 View exemplar Basepair signature: cWW-R-R-R History status: Updated, 1 parent	6	11
21	HL_48507.1 View exemplar Basepair signature: cWW-tSH-R-R History status: New id, 2 parents	6	11
22	HL_24544.4 View exemplar Basepair signature: cWW-tWH-R-tSH-R History status: Updated, 1 parent	8	10
23	HL_89482.2 View exemplar Basepair signature: cWW-tWH-R-R-R History status: Updated, 2 parents Purine riboswitch (3)	7	10
24	HL_17723.5 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match Pseudoknot geometry (3)	7	10
25	HL_34108.5 View exemplar Basepair signature: cWW-R History status: Updated, 1 parent	4	10
26	HL_18156.5 View exemplar Basepair signature: cWW-R-R-tWH-R History status: Updated, 1 parent	7	10
27	HL_87136.5 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Updated, 1 parent	8	10
28	HL_41833.5 View exemplar Basepair signature: cWW-tSH-tHH-tWW-R-R-R History status: Updated, 1 parent	11	10
29	HL_75579.5 View exemplar Basepair signature: cWW History status: Updated, 1 parent	3	10
30	HL_15603.2 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R History status: Exact match U1 small nuclear ribonucleoprotein A binding hairpin (1)	12	9
31	HL_39872.5 View exemplar Basepair signature: cWW-cSW-R-R-R-R History status: Updated, 1 parent	8	9
32	HL_46489.5 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R History status: Updated, 1 parent	9	9
33	HL_85534.4 View exemplar Basepair signature: cWW-tWH-tWH-R History status: Updated, 1 parent	7	9
34	HL_70420.5 View exemplar Basepair signature: cWW-tSH-cWH-tSH-tWH-R-tHW-tHW-R-R History status: Updated, 1 parent	14	9
35	HL_01926.6 View exemplar Basepair signature: cWW-bif-R-tSH-R History status: Updated, 1 parent	8	9
36	HL_57087.1 View exemplar Basepair signature: cWW-R History status: New id, 2 parents	4	8
37	HL_11509.5 View exemplar Basepair signature: cWW-R-R-cSH-cSH-R History status: Updated, 1 parent	9	8
38	HL_88311.5 View exemplar Basepair signature: cWW-R-tSW-R-R History status: Updated, 1 parent	8	8
39	HL_82538.4 View exemplar Basepair signature: cWW-R-R History status: Updated, 1 parent	5	7
40	HL_00311.1 View exemplar Basepair signature: cWW-R-tHW-R-R-R-R-R-R History status: New id, 2 parents	11	7
41	HL_27353.1 View exemplar Basepair signature: cWW History status: > 2 parents Mini UNCG (2)	3	7
42	HL_42677.2 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (3)	4	7
43	HL_99908.3 View exemplar Basepair signature: cWW-cSH-tHW-R-R-R History status: Updated, 1 parent	10	7
44	HL_62228.5 View exemplar Basepair signature: cWW-R-tSW-R History status: Updated, 1 parent	6	7
45	HL_19626.2 View exemplar Basepair signature: cWW-cSW-R History status: Updated, 1 parent	5	7
46	HL_72543.3 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R-R History status: Exact match	10	6
47	HL_66174.2 View exemplar Basepair signature: cWW-R-cSW-R-cSH History status: Updated, 1 parent	9	6
48	HL_89236.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R History status: Exact match	9	6
49	HL_06643.3 View exemplar Basepair signature: cWW-cSH History status: Exact match tRNA D-loop (3)	5	6
50	HL_45018.4 View exemplar Basepair signature: cWW-cWW-R-cSS-cSS-R History status: Updated, 1 parent	10	6
51	HL_48254.4 View exemplar Basepair signature: cWW-cWH-R-R-R-R History status: Updated, 1 parent	9	6
52	HL_64543.4 View exemplar Basepair signature: cWW-R-cSS-R-R-R-R History status: Updated, 1 parent	9	6
53	HL_95720.1 View exemplar Basepair signature: cWW-R-tSH-R-R History status: Exact match	8	5
54	HL_55035.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R History status: New id, 1 parent	11	5
55	HL_00415.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, 1 parent GNRA (1)	6	5
56	HL_86077.2 View exemplar Basepair signature: cWW-tSH-R-R History status: Updated, 1 parent	6	5
57	HL_86115.2 View exemplar Basepair signature: cWW-cWS History status: Updated, 1 parent UNCG related (2)	4	5
58	HL_94364.1 View exemplar Basepair signature: cWW-R-tWH-R-tWH-R-R-R History status: New id, 1 parent	11	5
59	HL_72273.1 View exemplar Basepair signature: cWW-cWS-R-R History status: Exact match tRNA D-loop (4)	6	5
60	HL_08382.4 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	5
61	HL_72372.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R History status: New id, 1 parent	12	5
62	HL_39203.1 View exemplar Basepair signature: cWW-cWW-R-tSW-R History status: New id, 1 parent	8	5
63	HL_78731.2 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	9	5
64	HL_82418.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	4
65	HL_31147.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: New id, 2 parents	10	4
66	HL_79956.2 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	4
67	HL_89131.1 View exemplar Basepair signature: cWW-cWH-R-R-tWH-R-R-R History status: New id, 1 parent	11	4
68	HL_11376.1 View exemplar Basepair signature: cWW History status: Exact match	5	4
69	HL_66677.2 View exemplar Basepair signature: cWW-tSW-R History status: Updated, 1 parent Fab BL3-6 binding hairpin with tSW (1)	5	4
70	HL_61547.5 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	4
71	HL_43357.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R History status: > 2 parents	10	4
72	HL_25124.2 View exemplar Basepair signature: cWW-tSW-R History status: Exact match UNCG (3)	5	4
73	HL_96915.3 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Updated, 1 parent	9	4
74	HL_48116.3 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	4
75	HL_23182.2 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R History status: Exact match	10	4
76	HL_28422.1 View exemplar Basepair signature: cWW-cWS-R History status: New id, 2 parents tRNA D-loop (1)	5	4
77	HL_34954.1 View exemplar Basepair signature: cWW-R-R-R-R-tSH-R-R-R-R History status: New id, 2 parents	13	4
78	HL_18587.3 View exemplar Basepair signature: cWW-R-tWH-R-R-R History status: Updated, 1 parent	8	4
79	HL_19905.4 View exemplar Basepair signature: cWW-R History status: Exact match	4	4
80	HL_62881.1 View exemplar Basepair signature: cWW-tSH-tHW-R-tSW-R-R History status: Exact match	10	4
81	HL_92706.1 View exemplar Basepair signature: cWW-cWW History status: Exact match UNCG variation (1)	5	4
82	HL_15701.1 View exemplar Basepair signature: cWW-cWW-cWW-R-R-R-R-R-R-R-R-R-R History status: New id, 1 parent	17	3
83	HL_19221.2 View exemplar Basepair signature: cWW-R-cSH History status: Exact match	6	3
84	HL_60200.2 View exemplar Basepair signature: cWW-tWH-R-R-R-R History status: Exact match	8	3
85	HL_21545.2 View exemplar Basepair signature: cWW-R-R-R History status: Exact match Pseudoknot geometry (1)	6	3
86	HL_76766.4 View exemplar Basepair signature: cWW-tSH-R History status: Exact match	5	3
87	HL_95969.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	3
88	HL_80492.2 View exemplar Basepair signature: cWW-tSH-cWS-cWS-R History status: Exact match tRNA D-loop (1)	8	3
89	HL_74307.1 View exemplar Basepair signature: cWW-tSH-tSH-R History status: Exact match	7	3
90	HL_06122.2 View exemplar Basepair signature: cWW-cSS-cSH History status: Exact match	7	3
91	HL_27429.4 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	3
92	HL_91142.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	3
93	HL_64371.3 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R-R-R History status: Exact match	11	3
94	HL_13707.2 View exemplar Basepair signature: cWW-tHH-cSH-R-R History status: Exact match	8	3
95	HL_94578.2 View exemplar Basepair signature: cWW-cWS-R-R History status: Updated, 1 parent	6	3
96	HL_01788.2 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Updated, 1 parent	8	3
97	HL_58083.3 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	3
98	HL_78361.1 View exemplar Basepair signature: cWW-R-cSS-R-R History status: Exact match	8	3
99	HL_06997.2 View exemplar Basepair signature: cWW-tWH-R-R-R-R-R-R-R History status: Exact match	12	3
100	HL_28339.2 View exemplar Basepair signature: cWW-R History status: Updated, 2 parents	4	3
101	HL_41827.1 View exemplar Basepair signature: cWW-R-tSW-R-R History status: Exact match	7	3
102	HL_91693.2 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	3
103	HL_55684.1 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	6	3
104	HL_18474.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, 2 parents	7	3
105	HL_65249.2 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	3
106	HL_42094.2 View exemplar Basepair signature: cWW-cWS-R-R-R History status: Updated, 1 parent tRNA D-loop (1)	7	3
107	HL_84911.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R History status: Exact match	15	3
108	HL_19033.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R History status: Exact match	10	3
109	HL_98833.3 View exemplar Basepair signature: cWW-cWS-R-R-R-R History status: Exact match tRNA D-loop (2)	8	3
110	HL_53358.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: New id, 1 parent	11	2
111	HL_24473.3 View exemplar Basepair signature: cWW-tSH-cWS-tSW-R-R-R-R-R History status: Exact match tRNA D-loop (2)	13	2
112	HL_46388.1 View exemplar Basepair signature: cWW-R-R History status: New id, 2 parents	5	2
113	HL_21419.1 View exemplar Basepair signature: cWW History status: New id, 1 parent	3	2
114	HL_42436.1 View exemplar Basepair signature: cWW-tHW-R-R-R-R-R-R-R-R-R-R History status: Exact match	15	2
115	HL_65924.1 View exemplar Basepair signature: cWW-cWW-R-R-tWH-R-tWH-R-R-R History status: Exact match	14	2
116	HL_69907.1 View exemplar Basepair signature: cWW-R History status: New id, no parents	4	2
117	HL_42553.1 View exemplar Basepair signature: cWW-tSH-R-cWS-R-R-R History status: Exact match	10	2
118	HL_54719.1 View exemplar Basepair signature: cWW-R History status: New id, 2 parents	4	2
119	HL_15793.1 View exemplar Basepair signature: cWW-R-R History status: New id, 2 parents	5	2
120	HL_70383.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R History status: New id, 1 parent	10	2
121	HL_33451.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	2
122	HL_74026.1 View exemplar Basepair signature: cWW-cWW-cWW-R-R-R-R-R-R-R History status: New id, no parents	14	2
123	HL_24711.1 View exemplar Basepair signature: cWW-tWH-R-R-R History status: Exact match	7	2
124	HL_38130.2 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	2
125	HL_77391.1 View exemplar Basepair signature: cWW History status: New id, 2 parents	3	2
126	HL_05361.1 View exemplar Basepair signature: cWW-cWW-R History status: Exact match	6	2
127	HL_50312.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match Mini UNCG (1)	6	2
128	HL_84172.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	2
129	HL_93771.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	2
130	HL_01389.1 View exemplar Basepair signature: cWW History status: New id, 2 parents Mini UNCG (1)	3	2
131	HL_19399.1 View exemplar Basepair signature: cWW-R-R-R-R-R-cSW-R-R-R-R-R-R History status: Exact match	16	2
132	HL_50937.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	2
133	HL_01766.1 View exemplar Basepair signature: cWW-R-tSW-cSS-R History status: New id, 1 parent	8	2
134	HL_86123.2 View exemplar Basepair signature: cWW-R-R-R-tWH-R-R-R History status: Exact match	10	2
135	HL_27478.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	2
136	HL_41700.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match	9	2
137	HL_82049.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: New id, 1 parent	11	2
138	HL_64438.1 View exemplar Basepair signature: cWW-tSH-tHS-R-R-R-R-R-R-R-R-R-R-R-R-R History status: Exact match	19	2
139	HL_84548.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, 2 parents	8	2
140	HL_38964.1 View exemplar Basepair signature: cWW-R-cHH-R-R-R-R-R History status: Exact match	11	2
141	HL_23290.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match T-loop related (1)	7	2
142	HL_34912.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	2
143	HL_92260.1 View exemplar Basepair signature: cWW-R History status: New id, no parents	4	2
144	HL_09697.1 View exemplar Basepair signature: cWW-R History status: New id, 2 parents	4	2
145	HL_29892.1 View exemplar Basepair signature: cWW-cWW-R-R History status: New id, no parents	7	2
146	HL_42077.3 View exemplar Basepair signature: cWW-tSH-R History status: Exact match	5	2
147	HL_92635.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	2
148	HL_35425.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: New id, 1 parent	9	2
149	HL_26495.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	2
150	HL_49210.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match Pseudoknot (1)	7	2
151	HL_87554.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	2
152	HL_98577.1 View exemplar Basepair signature: cWW-R-R-tHW-R-R-R-R-R-R-R History status: Exact match	13	2
153	HL_20004.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	2
154	HL_72489.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R History status: New id, 1 parent	12	2
155	HL_82382.1 View exemplar Basepair signature: cWW-cWW-R-tWH-R-R-R-R-R History status: New id, 1 parent	12	2
156	HL_10116.1 View exemplar Basepair signature: cWW-tSH-tHS-tSS-R-R-R-cWW-R-R-R-R-R History status: Exact match	18	1
157	HL_20806.1 View exemplar Basepair signature: cWW-R-R-R-R-cHH-R-R History status: Exact match	11	1
158	HL_30366.1 View exemplar Basepair signature: cWW-tSH-tHW-tHW-cSH-R History status: Exact match	11	1
159	HL_42345.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
160	HL_63001.1 View exemplar Basepair signature: cWW-R History status: New id, no parents	4	1
161	HL_93263.1 View exemplar Basepair signature: cWW History status: Exact match	2	1
162	HL_36151.1 View exemplar Basepair signature: cWW-cWW-tWW-R-R-R-R-R History status: New id, 1 parent	11	1
163	HL_65802.1 View exemplar Basepair signature: cWW-tSH-tHH-R-R-R-R-R History status: Exact match	11	1
164	HL_75984.1 View exemplar Basepair signature: cWW-cWW-cWH-R-R-tWH-R-R-R History status: Exact match	13	1
165	HL_85018.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	1
166	HL_04584.1 View exemplar Basepair signature: cWW-tWH-R-R History status: New id, no parents	6	1
167	HL_19132.1 View exemplar Basepair signature: cWW-tSH-R-tSH-R History status: Exact match	8	1
168	HL_27236.1 View exemplar Basepair signature: cWW-cWS-R-R History status: Exact match	7	1
169	HL_49998.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
170	HL_59982.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
171	HL_68904.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: New id, 1 parent	9	1
172	HL_79902.1 View exemplar Basepair signature: cWW-tSH-tHS-R-R History status: Exact match	8	1
173	HL_88960.1 View exemplar Basepair signature: cWW-R-tSW-R-R History status: Exact match	8	1
174	HL_98834.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	1
175	HL_11337.1 View exemplar Basepair signature: cWW-L-cWW-R-R-R History status: Exact match	9	1
176	HL_53789.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
177	HL_63323.1 View exemplar Basepair signature: cWW-R-cWH-R-R-R-R History status: New id, no parents	9	1
178	HL_93428.1 View exemplar Basepair signature: cWW-R-R-cWH-R History status: Exact match	7	1
179	HL_57217.1 View exemplar Basepair signature: cWW-R-R-R-cSH History status: Exact match	8	1
180	HL_76004.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: New id, no parents	10	1
181	HL_95822.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: New id, no parents	11	1
182	HL_04979.1 View exemplar Basepair signature: cWW-cSW-R-R-R-R History status: Exact match	9	1
183	HL_50018.1 View exemplar Basepair signature: cWW-tSH-R-R-R History status: Exact match	7	1
184	HL_99207.1 View exemplar Basepair signature: cWW-tSS-R-R History status: Exact match	7	1
185	HL_63642.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, 1 parent tRNA anticodon loop (1)	8	1
186	HL_73972.1 View exemplar Basepair signature: cWW-bif-tSW History status: Exact match	6	1
187	HL_83263.1 View exemplar Basepair signature: cWW-cSW-R-R-cWW History status: New id, no parents	9	1
188	HL_93530.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
189	HL_24707.1 View exemplar Basepair signature: cWW-cWS History status: Exact match	4	1
190	HL_37962.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R History status: Exact match	8	1
191	HL_46570.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
192	HL_57339.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	1
193	HL_85982.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
194	HL_05350.1 View exemplar Basepair signature: cWW-R-R-cWH-R-R-tHW-R-R-R-R-R-R-R History status: New id, no parents	18	1
195	HL_19226.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
196	HL_39943.1 View exemplar Basepair signature: cWW-R-tWW-cWH-R-tHS-R-R-R-R-R-R-R-R-R-R-tSH-R-R-R-R-R-R-R-cSH-cSS-R History status: New id, no parents	33	1
197	HL_50078.1 View exemplar Basepair signature: cWW-cWH-R-R-R-R-R History status: New id, no parents	9	1
198	HL_60203.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	5	1
199	HL_99612.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R History status: Exact match	8	1
200	HL_21695.1 View exemplar Basepair signature: cWW History status: Exact match	3	1
201	HL_63997.1 View exemplar Basepair signature: cWW History status: Exact match	3	1
202	HL_83865.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
203	HL_93567.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
204	HL_16822.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R-R History status: New id, no parents	12	1
205	HL_47337.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
206	HL_57644.1 View exemplar Basepair signature: cWW-tWH-R-tSH-R History status: New id, no parents	8	1
207	HL_96515.1 View exemplar Basepair signature: cWW-tSH-R-R-R History status: New id, 1 parent	7	1
208	HL_19363.1 View exemplar Basepair signature: cWW-cWS-R History status: Exact match tRNA D-loop (1)	5	1
209	HL_27397.1 View exemplar Basepair signature: cWW-cWW-R-R History status: Exact match	7	1
210	HL_40070.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, no parents	7	1
211	HL_22461.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R History status: Exact match	28	1
212	HL_33640.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
213	HL_55202.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R History status: Exact match	13	1
214	HL_64102.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
215	HL_17537.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
216	HL_38138.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
217	HL_57667.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
218	HL_66877.1 View exemplar Basepair signature: cWW-cWW-R-cSW-R-cSH History status: Exact match	11	1
219	HL_77692.1 View exemplar Basepair signature: cWW-tSH-cWS-cSH-R-R History status: Exact match	10	1
220	HL_40731.1 View exemplar Basepair signature: cWW-R-R-tWH-R History status: New id, no parents	7	1
221	HL_61871.1 View exemplar Basepair signature: cWW-cSH-cWW-bif-R-R-R-R History status: New id, no parents	11	1
222	HL_70872.1 View exemplar Basepair signature: cWW-R-cSH-R History status: Exact match	6	1
223	HL_81994.1 View exemplar Basepair signature: cWW-L-R-tHW-tWW-L-L-cSH-cWS-L-cWW-R-R-R-R-R-R-R-R-R-R-R-R-R History status: New id, no parents	29	1
224	HL_99932.1 View exemplar Basepair signature: cWW-cWH-R-R-R History status: Exact match	7	1
225	HL_12706.1 View exemplar Basepair signature: cWW-tSW History status: Exact match	4	1
226	HL_22533.1 View exemplar Basepair signature: cWW-cWW-R-R-R History status: Exact match	8	1
227	HL_44390.1 View exemplar Basepair signature: cWW-R-tSW-R-tWH-R-R-R History status: Exact match	11	1
228	HL_55272.1 View exemplar Basepair signature: cWW-cWW-L-R-cSS-cWW History status: Exact match	10	1
229	HL_84289.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R History status: Exact match	11	1
230	HL_25175.1 View exemplar Basepair signature: cWW-L-R-R-cWW-R-cWW-cWW-R-R-R History status: Exact match	16	1
231	HL_38897.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
232	HL_58052.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, no parents	8	1
233	HL_67000.1 View exemplar Basepair signature: cWW-tSW-R History status: Exact match	5	1
234	HL_78228.1 View exemplar Basepair signature: cWW-R-R-R-R-cWS-R-R-R History status: Exact match	12	1
235	HL_96994.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	1
236	HL_19452.1 View exemplar Basepair signature: cWW-R-R-cWS-cSH-R-R History status: Exact match	11	1
237	HL_50954.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R-R History status: New id, no parents	11	1
238	HL_70912.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
239	HL_55450.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	1
240	HL_74451.1 View exemplar Basepair signature: cWW-L-R-R-R-R-L-L-L-cWW History status: New id, 1 parent	13	1
241	HL_25195.1 View exemplar Basepair signature: cWW-cWH-R-R-R-R-R-R-R History status: Exact match	12	1
242	HL_97022.1 View exemplar Basepair signature: cWW-tSH-R History status: Exact match	5	1
243	HL_52116.1 View exemplar Basepair signature: cWW-cWS-R-R-R History status: Exact match tRNA D-loop (1)	7	1
244	HL_62500.1 View exemplar Basepair signature: cWW-bif-R-cWW-R History status: New id, no parents	7	1
245	HL_82243.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match	9	1
246	HL_13786.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
247	HL_45411.1 View exemplar Basepair signature: cWW-tSW-R-R-R-R History status: Exact match	8	1
248	HL_84720.1 View exemplar Basepair signature: cWW-L-R-R-R-L-cWW-L-R-L-cWW-R History status: Exact match	16	1
249	HL_94639.1 View exemplar Basepair signature: cWW-R-tSH-R-R-R History status: New id, no parents	9	1
250	HL_25197.1 View exemplar Basepair signature: cWW-tSH-tSH-bif-R-R-R-R-R-R-R History status: Exact match	15	1
251	HL_39035.1 View exemplar Basepair signature: cWW-cWW-tSH-tHS-R-R-R-R-R-cWW-R-R-R-R-R History status: New id, no parents	21	1
252	HL_48480.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
253	HL_58223.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
254	HL_67761.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
255	HL_78389.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
256	HL_87172.1 View exemplar Basepair signature: cWW-cWW-R-R-R History status: New id, no parents	9	1
257	HL_19673.1 View exemplar Basepair signature: cWW-bif-L-R-R-L-bif-L-cWW-R-R-R History status: New id, no parents	16	1
258	HL_52540.1 View exemplar Basepair signature: cWW History status: Exact match	4	1
259	HL_62564.1 View exemplar Basepair signature: cWW-tSH-R History status: Exact match	5	1
260	HL_82288.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
261	HL_14524.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R History status: New id, no parents	9	1
262	HL_23628.1 View exemplar Basepair signature: cWW-tWH-R-R History status: New id, no parents	6	1
263	HL_45740.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
264	HL_56775.1 View exemplar Basepair signature: cWW-cSH-R-R History status: Exact match	7	1
265	HL_65107.1 View exemplar Basepair signature: cWW-R-tSH-tHS-R-R-R-R-R-R-R-R-R-R History status: New id, no parents	18	1
266	HL_84768.1 View exemplar Basepair signature: cWW-R History status: Exact match tRNA anticodon loop with synthetase (1)	4	1
267	HL_94813.1 View exemplar Basepair signature: cWW-cWW-R-tWH-R-R-R-R History status: New id, no parents	11	1
268	HL_03785.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
269	HL_25947.1 View exemplar Basepair signature: cWW-L-R-R-L-tHW-L-R-R-R-L-cWW-cWW-R-R-R-R History status: New id, no parents	21	1
270	HL_59182.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R-R-R History status: Exact match	15	1
271	HL_78422.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: New id, 1 parent Pseudoknot geometry (1)	10	1
272	HL_87223.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
273	HL_97784.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R History status: Exact match	15	1
274	HL_53015.1 View exemplar Basepair signature: cWW-cSH-tSS-R-R History status: Exact match	8	1
275	HL_62880.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
276	HL_72389.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match	9	1
277	HL_14536.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
278	HL_24108.1 View exemplar Basepair signature: cWW-cWW-R-R-R History status: Exact match	8	1
279	HL_46055.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
280	HL_56809.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
281	HL_75624.1 View exemplar Basepair signature: cWW-cWW-cWH-R History status: Exact match	7	1
282	HL_84888.1 View exemplar Basepair signature: cWW-cWW-R-tSH-R-R History status: Exact match	9	1
283	HL_94981.1 View exemplar Basepair signature: cWW-R-R-tWH-R-R-R-R History status: New id, no parents T-loop with unstacked turn (1)	10	1
284	HL_04305.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
285	HL_39422.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
286	HL_59225.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
287	HL_68435.1 View exemplar Basepair signature: cWW-bif-R-R-R History status: Exact match	7	1
288	HL_78507.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
289	HL_10075.1 View exemplar Basepair signature: cWW-R-tSH-R-R History status: Exact match	8	1
290	HL_30008.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
291	HL_53116.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
292	HL_15291.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, 1 parent GNRA (1)	6	1
293	HL_24422.1 View exemplar Basepair signature: cWW-R-cWW-R-tSH-R-R-cHW-R-R History status: New id, no parents	15	1
294	HL_35865.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
295	HL_65428.1 View exemplar Basepair signature: cWW History status: New id, no parents	3	1
296	HL_95049.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
297	HL_04382.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, 1 parent	6	1
298	HL_26579.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	5	1
299	HL_39846.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R History status: Exact match	31	1
300	HL_49492.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-R-R-R-R-R-R-R History status: Exact match	14	1
301	HL_59610.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
302	HL_68579.1 View exemplar Basepair signature: cWW-cWW-R History status: Exact match	6	1

Coloring options:
Nucleotide numbers

New id, 2 parents 14; New id, 1 parent 23; Exact match 196; Updated, 1 parent 44; New id, no parents 39; Updated, 2 parents 4; > 2 parents 4;

Hairpin Loop Motif Atlas Release 1.16 Download CSV JSON annotations

Hairpin Loop Motif Atlas Release 1.16

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