#Varna 2DMotifNum NtsInstances
1
  • HL_67042.15
HL_67042.15
  • Basepair signature: cWW-tSH-R-R
  • History status: Updated, 2 parents
  • GNRA (56)
  • GNRA variation (5)
  • 6318
    2
    • HL_72498.15
    HL_72498.15
    • Basepair signature: cWW-tWH-R-R-R
    • History status: Updated, 1 parent
  • T-loop with 2 stacked bulged bases (29)
  • T-loop with 2 bulged bases not stacked (2)
  • 776
    3
    • HL_39895.9
    HL_39895.9
    • Basepair signature: cWW-tSW-R
    • History status: Updated, 1 parent
  • UNCG (6)
  • GNRA related (1)
  • 543
    4
    • HL_18781.7
    HL_18781.7
    • Basepair signature: cWW-tSH-R-R-R-R
    • History status: Updated, 1 parent
  • GNRA wlth tandem sheared (2)
  • 830
    5
    • HL_91226.6
    HL_91226.6
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Updated, 1 parent
  • Pseudoknot geometry (1)
  • 822
    6
    • HL_97270.6
    HL_97270.6
    • Basepair signature: cWW-tWH-R-R-R
    • History status: Updated, 1 parent
  • T-loop with 2 stacked bulged bases (1)
  • Other HL (1)
  • T-loop with 1 bulged base (1)
  • 721
    7
    • HL_37020.1
    HL_37020.1
    • Basepair signature: cWW-R-R-R-R
    • History status: > 2 parents
    719
    8
    • HL_46175.5
    HL_46175.5
    • Basepair signature: cWW-R-tSH-R-R-R-R
    • History status: Updated, 1 parent
    1018
    9
    • HL_74411.1
    HL_74411.1
    • Basepair signature: cWW-tSH-R-R
    • History status: > 2 parents
  • GNRA (4)
  • GNRA variation (1)
  • 617
    10
    • HL_74465.6
    HL_74465.6
    • Basepair signature: cWW-bif-R-tSH-R-R
    • History status: Exact match
  • tRNA anticodon loop (6)
  • Anticodon loop related (1)
  • 916
    11
    • HL_75759.7
    HL_75759.7
    • Basepair signature: cWW-R
    • History status: Updated, 1 parent
  • Mini UNCG (1)
  • 416
    12
    • HL_27271.4
    HL_27271.4
    • Basepair signature: cWW-R-R-R
    • History status: Updated, 1 parent
  • Pseudoknot geometry (2)
  • 615
    13
    • HL_33402.6
    HL_33402.6
    • Basepair signature: cWW-tSH-R-R-R
    • History status: Updated, 1 parent
    714
    14
    • HL_56824.5
    HL_56824.5
    • Basepair signature: cWW-R-R
    • History status: Updated, 1 parent
    514
    15
    • HL_68081.6
    HL_68081.6
    • Basepair signature: cWW-R-R-tWH-R-R
    • History status: Updated, 1 parent
  • T-loop with unstacked turn (2)
  • 813
    16
    • HL_82294.5
    HL_82294.5
    • Basepair signature: cWW-cWW-R-R
    • History status: Updated, 1 parent
  • T-loop related (1)
  • 713
    17
    • HL_48039.3
    HL_48039.3
    • Basepair signature: cWW-R
    • History status: Updated, 1 parent
    412
    18
    • HL_80459.6
    HL_80459.6
    • Basepair signature: cWW-R-R
    • History status: Updated, 1 parent
    511
    19
    • HL_11547.5
    HL_11547.5
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Updated, 2 parents
    811
    20
    • HL_34027.5
    HL_34027.5
    • Basepair signature: cWW-R-R-R
    • History status: Updated, 1 parent
    611
    21
    • HL_48507.1
    HL_48507.1
    • Basepair signature: cWW-tSH-R-R
    • History status: New id, 2 parents
    611
    22
    • HL_24544.4
    HL_24544.4
    • Basepair signature: cWW-tWH-R-tSH-R
    • History status: Updated, 1 parent
    810
    23
    • HL_89482.2
    HL_89482.2
    • Basepair signature: cWW-tWH-R-R-R
    • History status: Updated, 2 parents
    710
    24
    • HL_17723.5
    HL_17723.5
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
  • Pseudoknot geometry (3)
  • 710
    25
    • HL_34108.5
    HL_34108.5
    • Basepair signature: cWW-R
    • History status: Updated, 1 parent
    410
    26
    • HL_18156.5
    HL_18156.5
    • Basepair signature: cWW-R-R-tWH-R
    • History status: Updated, 1 parent
    710
    27
    • HL_87136.5
    HL_87136.5
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Updated, 1 parent
    810
    28
    • HL_41833.5
    HL_41833.5
    • Basepair signature: cWW-tSH-tHH-tWW-R-R-R
    • History status: Updated, 1 parent
    1110
    29
    • HL_75579.5
    HL_75579.5
    • Basepair signature: cWW
    • History status: Updated, 1 parent
    310
    30
    • HL_15603.2
    HL_15603.2
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R
    • History status: Exact match
  • U1 small nuclear ribonucleoprotein A binding hairpin (1)
  • 129
    31
    • HL_39872.5
    HL_39872.5
    • Basepair signature: cWW-cSW-R-R-R-R
    • History status: Updated, 1 parent
    89
    32
    • HL_46489.5
    HL_46489.5
    • Basepair signature: cWW-tSH-R-R-R-R-R
    • History status: Updated, 1 parent
    99
    33
    • HL_85534.4
    HL_85534.4
    • Basepair signature: cWW-tWH-tWH-R
    • History status: Updated, 1 parent
    79
    34
    • HL_70420.5
    HL_70420.5
    • Basepair signature: cWW-tSH-cWH-tSH-tWH-R-tHW-tHW-R-R
    • History status: Updated, 1 parent
    149
    35
    • HL_01926.6
    HL_01926.6
    • Basepair signature: cWW-bif-R-tSH-R
    • History status: Updated, 1 parent
    89
    36
    • HL_57087.1
    HL_57087.1
    • Basepair signature: cWW-R
    • History status: New id, 2 parents
    48
    37
    • HL_11509.5
    HL_11509.5
    • Basepair signature: cWW-R-R-cSH-cSH-R
    • History status: Updated, 1 parent
    98
    38
    • HL_88311.5
    HL_88311.5
    • Basepair signature: cWW-R-tSW-R-R
    • History status: Updated, 1 parent
    88
    39
    • HL_82538.4
    HL_82538.4
    • Basepair signature: cWW-R-R
    • History status: Updated, 1 parent
    57
    40
    • HL_00311.1
    HL_00311.1
    • Basepair signature: cWW-R-tHW-R-R-R-R-R-R
    • History status: New id, 2 parents
    117
    41
    • HL_27353.1
    HL_27353.1
    • Basepair signature: cWW
    • History status: > 2 parents
  • Mini UNCG (2)
  • 37
    42
    • HL_42677.2
    HL_42677.2
    • Basepair signature: cWW
    • History status: Exact match
  • Mini UNCG (3)
  • 47
    43
    • HL_99908.3
    HL_99908.3
    • Basepair signature: cWW-cSH-tHW-R-R-R
    • History status: Updated, 1 parent
    107
    44
    • HL_62228.5
    HL_62228.5
    • Basepair signature: cWW-R-tSW-R
    • History status: Updated, 1 parent
    67
    45
    • HL_19626.2
    HL_19626.2
    • Basepair signature: cWW-cSW-R
    • History status: Updated, 1 parent
    57
    46
    • HL_72543.3
    HL_72543.3
    • Basepair signature: cWW-tSH-R-R-R-R-R-R
    • History status: Exact match
    106
    47
    • HL_66174.2
    HL_66174.2
    • Basepair signature: cWW-R-cSW-R-cSH
    • History status: Updated, 1 parent
    96
    48
    • HL_89236.1
    HL_89236.1
    • Basepair signature: cWW-tSH-R-R-R-R-R
    • History status: Exact match
    96
    49
    • HL_06643.3
    HL_06643.3
    • Basepair signature: cWW-cSH
    • History status: Exact match
  • tRNA D-loop (3)
  • 56
    50
    • HL_45018.4
    HL_45018.4
    • Basepair signature: cWW-cWW-R-cSS-cSS-R
    • History status: Updated, 1 parent
    106
    51
    • HL_48254.4
    HL_48254.4
    • Basepair signature: cWW-cWH-R-R-R-R
    • History status: Updated, 1 parent
    96
    52
    • HL_64543.4
    HL_64543.4
    • Basepair signature: cWW-R-cSS-R-R-R-R
    • History status: Updated, 1 parent
    96
    53
    • HL_95720.1
    HL_95720.1
    • Basepair signature: cWW-R-tSH-R-R
    • History status: Exact match
    85
    54
    • HL_55035.1
    HL_55035.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R
    • History status: New id, 1 parent
    115
    55
    • HL_00415.1
    HL_00415.1
    • Basepair signature: cWW-R-R-R
    • History status: New id, 1 parent
  • GNRA (1)
  • 65
    56
    • HL_86077.2
    HL_86077.2
    • Basepair signature: cWW-tSH-R-R
    • History status: Updated, 1 parent
    65
    57
    • HL_86115.2
    HL_86115.2
    • Basepair signature: cWW-cWS
    • History status: Updated, 1 parent
  • D-loop related (2)
  • 45
    58
    • HL_94364.1
    HL_94364.1
    • Basepair signature: cWW-R-tWH-R-tWH-R-R-R
    • History status: New id, 1 parent
    115
    59
    • HL_72273.1
    HL_72273.1
    • Basepair signature: cWW-cWS-R-R
    • History status: Exact match
  • tRNA D-loop (4)
  • 65
    60
    • HL_08382.4
    HL_08382.4
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    65
    61
    • HL_72372.1
    HL_72372.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R
    • History status: New id, 1 parent
    125
    62
    • HL_39203.1
    HL_39203.1
    • Basepair signature: cWW-cWW-R-tSW-R
    • History status: New id, 1 parent
    85
    63
    • HL_78731.2
    HL_78731.2
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Exact match
  • Pseudoknot geometry (1)
  • 95
    64
    • HL_82418.1
    HL_82418.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    54
    65
    • HL_31147.1
    HL_31147.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: New id, 2 parents
    104
    66
    • HL_79956.2
    HL_79956.2
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    64
    67
    • HL_89131.1
    HL_89131.1
    • Basepair signature: cWW-cWH-R-R-tWH-R-R-R
    • History status: New id, 1 parent
    114
    68
    • HL_11376.1
    HL_11376.1
    • Basepair signature: cWW
    • History status: Exact match
    54
    69
    • HL_66677.2
    HL_66677.2
    • Basepair signature: cWW-tSW-R
    • History status: Updated, 1 parent
  • Fab BL3-6 binding hairpin with tSW (1)
  • 54
    70
    • HL_61547.5
    HL_61547.5
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    64
    71
    • HL_43357.1
    HL_43357.1
    • Basepair signature: cWW-cWW-R-R-R-R-R
    • History status: > 2 parents
    104
    72
    • HL_25124.2
    HL_25124.2
    • Basepair signature: cWW-tSW-R
    • History status: Exact match
  • UNCG (3)
  • 54
    73
    • HL_96915.3
    HL_96915.3
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Updated, 1 parent
    94
    74
    • HL_48116.3
    HL_48116.3
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    64
    75
    • HL_23182.2
    HL_23182.2
    • Basepair signature: cWW-cWW-R-R-R-R-R
    • History status: Exact match
    104
    76
    • HL_28422.1
    HL_28422.1
    • Basepair signature: cWW-cWS-R
    • History status: New id, 2 parents
  • tRNA D-loop (1)
  • 54
    77
    • HL_34954.1
    HL_34954.1
    • Basepair signature: cWW-R-R-R-R-tSH-R-R-R-R
    • History status: New id, 2 parents
    134
    78
    • HL_18587.3
    HL_18587.3
    • Basepair signature: cWW-R-tWH-R-R-R
    • History status: Updated, 1 parent
    84
    79
    • HL_19905.4
    HL_19905.4
    • Basepair signature: cWW-R
    • History status: Exact match
    44
    80
    • HL_62881.1
    HL_62881.1
    • Basepair signature: cWW-tSH-tHW-R-tSW-R-R
    • History status: Exact match
    104
    81
    • HL_92706.1
    HL_92706.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • UNCG variation (1)
  • 54
    82
    • HL_15701.1
    HL_15701.1
    • Basepair signature: cWW-cWW-cWW-R-R-R-R-R-R-R-R-R-R
    • History status: New id, 1 parent
    173
    83
    • HL_19221.2
    HL_19221.2
    • Basepair signature: cWW-R-cSH
    • History status: Exact match
    63
    84
    • HL_60200.2
    HL_60200.2
    • Basepair signature: cWW-tWH-R-R-R-R
    • History status: Exact match
    83
    85
    • HL_21545.2
    HL_21545.2
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
  • Pseudoknot geometry (1)
  • 63
    86
    • HL_76766.4
    HL_76766.4
    • Basepair signature: cWW-tSH-R
    • History status: Exact match
    53
    87
    • HL_95969.1
    HL_95969.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    73
    88
    • HL_80492.2
    HL_80492.2
    • Basepair signature: cWW-tSH-cWS-cWS-R
    • History status: Exact match
  • tRNA D-loop (1)
  • 83
    89
    • HL_74307.1
    HL_74307.1
    • Basepair signature: cWW-tSH-tSH-R
    • History status: Exact match
    73
    90
    • HL_06122.2
    HL_06122.2
    • Basepair signature: cWW-cSS-cSH
    • History status: Exact match
    73
    91
    • HL_27429.4
    HL_27429.4
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
    103
    92
    • HL_91142.1
    HL_91142.1
    • Basepair signature: cWW-R
    • History status: Exact match
    43
    93
    • HL_64371.3
    HL_64371.3
    • Basepair signature: cWW-tSH-R-R-R-R-R-R-R
    • History status: Exact match
    113
    94
    • HL_13707.2
    HL_13707.2
    • Basepair signature: cWW-tHH-cSH-R-R
    • History status: Exact match
    83
    95
    • HL_94578.2
    HL_94578.2
    • Basepair signature: cWW-cWS-R-R
    • History status: Updated, 1 parent
    63
    96
    • HL_01788.2
    HL_01788.2
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Updated, 1 parent
    83
    97
    • HL_58083.3
    HL_58083.3
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    83
    98
    • HL_78361.1
    HL_78361.1
    • Basepair signature: cWW-R-cSS-R-R
    • History status: Exact match
    83
    99
    • HL_06997.2
    HL_06997.2
    • Basepair signature: cWW-tWH-R-R-R-R-R-R-R
    • History status: Exact match
    123
    100
    • HL_28339.2
    HL_28339.2
    • Basepair signature: cWW-R
    • History status: Updated, 2 parents
    43
    101
    • HL_41827.1
    HL_41827.1
    • Basepair signature: cWW-R-tSW-R-R
    • History status: Exact match
    73
    102
    • HL_91693.2
    HL_91693.2
    • Basepair signature: cWW-R-R
    • History status: Exact match
    53
    103
    • HL_55684.1
    HL_55684.1
    • Basepair signature: cWW-tSH-R-R
    • History status: Exact match
    63
    104
    • HL_18474.1
    HL_18474.1
    • Basepair signature: cWW-R-R-R-R
    • History status: New id, 2 parents
    73
    105
    • HL_65249.2
    HL_65249.2
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    63
    106
    • HL_42094.2
    HL_42094.2
    • Basepair signature: cWW-cWS-R-R-R
    • History status: Updated, 1 parent
    73
    107
    • HL_84911.1
    HL_84911.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    153
    108
    • HL_19033.1
    HL_19033.1
    • Basepair signature: cWW-cWW-R-R-R-R-R
    • History status: Exact match
    103
    109
    • HL_98833.3
    HL_98833.3
    • Basepair signature: cWW-cWS-R-R-R-R
    • History status: Exact match
  • tRNA D-loop (1)
  • 83
    110
    • HL_53358.1
    HL_53358.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: New id, 1 parent
    112
    111
    • HL_24473.3
    HL_24473.3
    • Basepair signature: cWW-tSH-cWS-tSW-R-R-R-R-R
    • History status: Exact match
  • tRNA D-loop (2)
  • 132
    112
    • HL_46388.1
    HL_46388.1
    • Basepair signature: cWW-R-R
    • History status: New id, 2 parents
    52
    113
    • HL_21419.1
    HL_21419.1
    • Basepair signature: cWW
    • History status: New id, 1 parent
    32
    114
    • HL_42436.1
    HL_42436.1
    • Basepair signature: cWW-tHW-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    152
    115
    • HL_65924.1
    HL_65924.1
    • Basepair signature: cWW-cWW-R-R-tWH-R-tWH-R-R-R
    • History status: Exact match
    142
    116
    • HL_69907.1
    HL_69907.1
    • Basepair signature: cWW-R
    • History status: New id, no parents
    42
    117
    • HL_42553.1
    HL_42553.1
    • Basepair signature: cWW-tSH-R-cWS-R-R-R
    • History status: Exact match
    102
    118
    • HL_54719.1
    HL_54719.1
    • Basepair signature: cWW-R
    • History status: New id, 2 parents
    42
    119
    • HL_15793.1
    HL_15793.1
    • Basepair signature: cWW-R-R
    • History status: New id, 2 parents
    52
    120
    • HL_70383.1
    HL_70383.1
    • Basepair signature: cWW-cWW-R-R-R-R-R
    • History status: New id, 1 parent
    102
    121
    • HL_33451.1
    HL_33451.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    112
    122
    • HL_74026.1
    HL_74026.1
    • Basepair signature: cWW-cWW-cWW-R-R-R-R-R-R-R
    • History status: New id, no parents
    142
    123
    • HL_24711.1
    HL_24711.1
    • Basepair signature: cWW-tWH-R-R-R
    • History status: Exact match
    72
    124
    • HL_38130.2
    HL_38130.2
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    112
    125
    • HL_77391.1
    HL_77391.1
    • Basepair signature: cWW
    • History status: New id, 2 parents
    32
    126
    • HL_05361.1
    HL_05361.1
    • Basepair signature: cWW-cWW-R
    • History status: Exact match
    62
    127
    • HL_50312.1
    HL_50312.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
  • Mini UNCG (1)
  • 62
    128
    • HL_84172.1
    HL_84172.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    72
    129
    • HL_93771.1
    HL_93771.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    62
    130
    • HL_01389.1
    HL_01389.1
    • Basepair signature: cWW
    • History status: New id, 2 parents
  • Mini UNCG (1)
  • 32
    131
    • HL_19399.1
    HL_19399.1
    • Basepair signature: cWW-R-R-R-R-R-cSW-R-R-R-R-R-R
    • History status: Exact match
    162
    132
    • HL_50937.1
    HL_50937.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
    102
    133
    • HL_01766.1
    HL_01766.1
    • Basepair signature: cWW-R-tSW-cSS-R
    • History status: New id, 1 parent
    82
    134
    • HL_86123.2
    HL_86123.2
    • Basepair signature: cWW-R-R-R-tWH-R-R-R
    • History status: Exact match
    102
    135
    • HL_27478.1
    HL_27478.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    112
    136
    • HL_41700.1
    HL_41700.1
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Exact match
    92
    137
    • HL_82049.1
    HL_82049.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: New id, 1 parent
    112
    138
    • HL_64438.1
    HL_64438.1
    • Basepair signature: cWW-tSH-tHS-R-R-R-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    192
    139
    • HL_84548.1
    HL_84548.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: New id, 2 parents
    82
    140
    • HL_38964.1
    HL_38964.1
    • Basepair signature: cWW-R-cHH-R-R-R-R-R
    • History status: Exact match
    112
    141
    • HL_23290.1
    HL_23290.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
  • T-loop related (1)
  • 72
    142
    • HL_34912.1
    HL_34912.1
    • Basepair signature: cWW-R
    • History status: Exact match
    42
    143
    • HL_92260.1
    HL_92260.1
    • Basepair signature: cWW-R
    • History status: New id, no parents
    42
    144
    • HL_09697.1
    HL_09697.1
    • Basepair signature: cWW-R
    • History status: New id, 2 parents
    42
    145
    • HL_29892.1
    HL_29892.1
    • Basepair signature: cWW-cWW-R-R
    • History status: New id, no parents
    72
    146
    • HL_42077.3
    HL_42077.3
    • Basepair signature: cWW-tSH-R
    • History status: Exact match
    52
    147
    • HL_92635.1
    HL_92635.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    52
    148
    • HL_35425.1
    HL_35425.1
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: New id, 1 parent
    92
    149
    • HL_26495.1
    HL_26495.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    82
    150
    • HL_49210.1
    HL_49210.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
  • Pseudoknot (1)
  • 72
    151
    • HL_87554.1
    HL_87554.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    52
    152
    • HL_98577.1
    HL_98577.1
    • Basepair signature: cWW-R-R-tHW-R-R-R-R-R-R-R
    • History status: Exact match
    132
    153
    • HL_20004.1
    HL_20004.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    52
    154
    • HL_72489.1
    HL_72489.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R
    • History status: New id, 1 parent
    122
    155
    • HL_82382.1
    HL_82382.1
    • Basepair signature: cWW-cWW-R-tWH-R-R-R-R-R
    • History status: New id, 1 parent
    122
    156
    • HL_10116.1
    HL_10116.1
    • Basepair signature: cWW-tSH-tHS-tSS-R-R-R-cWW-R-R-R-R-R
    • History status: Exact match
    181
    157
    • HL_20806.1
    HL_20806.1
    • Basepair signature: cWW-R-R-R-R-cHH-R-R
    • History status: Exact match
    111
    158
    • HL_30366.1
    HL_30366.1
    • Basepair signature: cWW-tSH-tHW-tHW-cSH-R
    • History status: Exact match
    111
    159
    • HL_42345.1
    HL_42345.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    160
    • HL_63001.1
    HL_63001.1
    • Basepair signature: cWW-R
    • History status: New id, no parents
    41
    161
    • HL_93263.1
    HL_93263.1
    • Basepair signature: cWW
    • History status: Exact match
    21
    162
    • HL_36151.1
    HL_36151.1
    • Basepair signature: cWW-cWW-tWW-R-R-R-R-R
    • History status: New id, 1 parent
    111
    163
    • HL_65802.1
    HL_65802.1
    • Basepair signature: cWW-tSH-tHH-R-R-R-R-R
    • History status: Exact match
    111
    164
    • HL_75984.1
    HL_75984.1
    • Basepair signature: cWW-cWW-cWH-R-R-tWH-R-R-R
    • History status: Exact match
    131
    165
    • HL_85018.1
    HL_85018.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: Exact match
    101
    166
    • HL_04584.1
    HL_04584.1
    • Basepair signature: cWW-tWH-R-R
    • History status: New id, no parents
    61
    167
    • HL_19132.1
    HL_19132.1
    • Basepair signature: cWW-tSH-R-tSH-R
    • History status: Exact match
    81
    168
    • HL_27236.1
    HL_27236.1
    • Basepair signature: cWW-cWS-R-R
    • History status: Exact match
    71
    169
    • HL_49998.1
    HL_49998.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    170
    • HL_59982.1
    HL_59982.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    171
    • HL_68904.1
    HL_68904.1
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: New id, 1 parent
    91
    172
    • HL_79902.1
    HL_79902.1
    • Basepair signature: cWW-tSH-tHS-R-R
    • History status: Exact match
    81
    173
    • HL_88960.1
    HL_88960.1
    • Basepair signature: cWW-R-tSW-R-R
    • History status: Exact match
    81
    174
    • HL_98834.1
    HL_98834.1
    • Basepair signature: cWW-R-R-R
    • History status: New id, no parents
    61
    175
    • HL_11337.1
    HL_11337.1
    • Basepair signature: cWW-L-cWW-R-R-R
    • History status: Exact match
    91
    176
    • HL_53789.1
    HL_53789.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    177
    • HL_63323.1
    HL_63323.1
    • Basepair signature: cWW-R-cWH-R-R-R-R
    • History status: New id, no parents
    91
    178
    • HL_93428.1
    HL_93428.1
    • Basepair signature: cWW-R-R-cWH-R
    • History status: Exact match
    71
    179
    • HL_57217.1
    HL_57217.1
    • Basepair signature: cWW-R-R-R-cSH
    • History status: Exact match
    81
    180
    • HL_76004.1
    HL_76004.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: New id, no parents
    101
    181
    • HL_95822.1
    HL_95822.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: New id, no parents
    111
    182
    • HL_04979.1
    HL_04979.1
    • Basepair signature: cWW-cSW-R-R-R-R
    • History status: Exact match
    91
    183
    • HL_50018.1
    HL_50018.1
    • Basepair signature: cWW-tSH-R-R-R
    • History status: Exact match
    71
    184
    • HL_99207.1
    HL_99207.1
    • Basepair signature: cWW-tSS-R-R
    • History status: Exact match
    71
    185
    • HL_63642.1
    HL_63642.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: New id, 1 parent
    81
    186
    • HL_73972.1
    HL_73972.1
    • Basepair signature: cWW-bif-tSW
    • History status: Exact match
    61
    187
    • HL_83263.1
    HL_83263.1
    • Basepair signature: cWW-cSW-R-R-cWW
    • History status: New id, no parents
    91
    188
    • HL_93530.1
    HL_93530.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    189
    • HL_24707.1
    HL_24707.1
    • Basepair signature: cWW-cWS
    • History status: Exact match
    41
    190
    • HL_37962.1
    HL_37962.1
    • Basepair signature: cWW-tSH-R-R-R-R
    • History status: Exact match
    81
    191
    • HL_46570.1
    HL_46570.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    81
    192
    • HL_57339.1
    HL_57339.1
    • Basepair signature: cWW-R-R
    • History status: New id, no parents
    51
    193
    • HL_85982.1
    HL_85982.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    194
    • HL_05350.1
    HL_05350.1
    • Basepair signature: cWW-R-R-cWH-R-R-tHW-R-R-R-R-R-R-R
    • History status: New id, no parents
    181
    195
    • HL_19226.1
    HL_19226.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    196
    • HL_39943.1
    HL_39943.1
    • Basepair signature: cWW-R-tWW-cWH-R-tHS-R-R-R-R-R-R-R-R-R-R-tSH-R-R-R-R-R-R-R-cSH-cSS-R
    • History status: New id, no parents
    331
    197
    • HL_50078.1
    HL_50078.1
    • Basepair signature: cWW-cWH-R-R-R-R-R
    • History status: New id, no parents
    91
    198
    • HL_60203.1
    HL_60203.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
    51
    199
    • HL_99612.1
    HL_99612.1
    • Basepair signature: cWW-tSH-R-R-R-R
    • History status: Exact match
    81
    200
    • HL_21695.1
    HL_21695.1
    • Basepair signature: cWW
    • History status: Exact match
    31
    201
    • HL_63997.1
    HL_63997.1
    • Basepair signature: cWW
    • History status: Exact match
    31
    202
    • HL_83865.1
    HL_83865.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    203
    • HL_93567.1
    HL_93567.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    204
    • HL_16822.1
    HL_16822.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R-R
    • History status: New id, no parents
    121
    205
    • HL_47337.1
    HL_47337.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    206
    • HL_57644.1
    HL_57644.1
    • Basepair signature: cWW-tWH-R-tSH-R
    • History status: New id, no parents
    81
    207
    • HL_96515.1
    HL_96515.1
    • Basepair signature: cWW-tSH-R-R-R
    • History status: New id, 1 parent
    71
    208
    • HL_19363.1
    HL_19363.1
    • Basepair signature: cWW-cWS-R
    • History status: Exact match
  • tRNA D-loop (1)
  • 51
    209
    • HL_27397.1
    HL_27397.1
    • Basepair signature: cWW-cWW-R-R
    • History status: Exact match
    71
    210
    • HL_40070.1
    HL_40070.1
    • Basepair signature: cWW-R-R-R-R
    • History status: New id, no parents
    71
    211
    • HL_22461.1
    HL_22461.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    281
    212
    • HL_33640.1
    HL_33640.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    81
    213
    • HL_55202.1
    HL_55202.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    131
    214
    • HL_64102.1
    HL_64102.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    215
    • HL_17537.1
    HL_17537.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    81
    216
    • HL_38138.1
    HL_38138.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    217
    • HL_57667.1
    HL_57667.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    218
    • HL_66877.1
    HL_66877.1
    • Basepair signature: cWW-cWW-R-cSW-R-cSH
    • History status: Exact match
    111
    219
    • HL_77692.1
    HL_77692.1
    • Basepair signature: cWW-tSH-cWS-cSH-R-R
    • History status: Exact match
    101
    220
    • HL_40731.1
    HL_40731.1
    • Basepair signature: cWW-R-R-tWH-R
    • History status: New id, no parents
    71
    221
    • HL_61871.1
    HL_61871.1
    • Basepair signature: cWW-cSH-cWW-bif-R-R-R-R
    • History status: New id, no parents
    111
    222
    • HL_70872.1
    HL_70872.1
    • Basepair signature: cWW-R-cSH-R
    • History status: Exact match
    61
    223
    • HL_81994.1
    HL_81994.1
    • Basepair signature: cWW-L-R-tHW-tWW-L-L-cSH-cWS-L-cWW-R-R-R-R-R-R-R-R-R-R-R-R-R
    • History status: New id, no parents
    291
    224
    • HL_99932.1
    HL_99932.1
    • Basepair signature: cWW-cWH-R-R-R
    • History status: Exact match
    71
    225
    • HL_12706.1
    HL_12706.1
    • Basepair signature: cWW-tSW
    • History status: Exact match
    41
    226
    • HL_22533.1
    HL_22533.1
    • Basepair signature: cWW-cWW-R-R-R
    • History status: Exact match
    81
    227
    • HL_44390.1
    HL_44390.1
    • Basepair signature: cWW-R-tSW-R-tWH-R-R-R
    • History status: Exact match
    111
    228
    • HL_55272.1
    HL_55272.1
    • Basepair signature: cWW-cWW-L-R-cSS-cWW
    • History status: Exact match
    101
    229
    • HL_84289.1
    HL_84289.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R
    • History status: Exact match
    111
    230
    • HL_25175.1
    HL_25175.1
    • Basepair signature: cWW-L-R-R-cWW-R-cWW-cWW-R-R-R
    • History status: Exact match
    161
    231
    • HL_38897.1
    HL_38897.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    232
    • HL_58052.1
    HL_58052.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: New id, no parents
    81
    233
    • HL_67000.1
    HL_67000.1
    • Basepair signature: cWW-tSW-R
    • History status: Exact match
    51
    234
    • HL_78228.1
    HL_78228.1
    • Basepair signature: cWW-R-R-R-R-cWS-R-R-R
    • History status: Exact match
    121
    235
    • HL_96994.1
    HL_96994.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R
    • History status: Exact match
    111
    236
    • HL_19452.1
    HL_19452.1
    • Basepair signature: cWW-R-R-cWS-cSH-R-R
    • History status: Exact match
    111
    237
    • HL_50954.1
    HL_50954.1
    • Basepair signature: cWW-tSH-R-R-R-R-R-R
    • History status: New id, no parents
    111
    238
    • HL_70912.1
    HL_70912.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    239
    • HL_55450.1
    HL_55450.1
    • Basepair signature: cWW-R-R-R
    • History status: New id, no parents
    61
    240
    • HL_74451.1
    HL_74451.1
    • Basepair signature: cWW-L-R-R-R-R-L-L-L-cWW
    • History status: New id, 1 parent
    131
    241
    • HL_25195.1
    HL_25195.1
    • Basepair signature: cWW-cWH-R-R-R-R-R-R-R
    • History status: Exact match
    121
    242
    • HL_97022.1
    HL_97022.1
    • Basepair signature: cWW-tSH-R
    • History status: Exact match
    51
    243
    • HL_52116.1
    HL_52116.1
    • Basepair signature: cWW-cWS-R-R-R
    • History status: Exact match
    71
    244
    • HL_62500.1
    HL_62500.1
    • Basepair signature: cWW-bif-R-cWW-R
    • History status: New id, no parents
    71
    245
    • HL_82243.1
    HL_82243.1
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Exact match
    91
    246
    • HL_13786.1
    HL_13786.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    247
    • HL_45411.1
    HL_45411.1
    • Basepair signature: cWW-tSW-R-R-R-R
    • History status: Exact match
    81
    248
    • HL_84720.1
    HL_84720.1
    • Basepair signature: cWW-L-R-R-R-L-cWW-L-R-L-cWW-R
    • History status: Exact match
    161
    249
    • HL_94639.1
    HL_94639.1
    • Basepair signature: cWW-R-tSH-R-R-R
    • History status: New id, no parents
    91
    250
    • HL_25197.1
    HL_25197.1
    • Basepair signature: cWW-tSH-tSH-bif-R-R-R-R-R-R-R
    • History status: Exact match
    151
    251
    • HL_39035.1
    HL_39035.1
    • Basepair signature: cWW-cWW-tSH-tHS-R-R-R-R-R-cWW-R-R-R-R-R
    • History status: New id, no parents
    211
    252
    • HL_48480.1
    HL_48480.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    253
    • HL_58223.1
    HL_58223.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    254
    • HL_67761.1
    HL_67761.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    255
    • HL_78389.1
    HL_78389.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    256
    • HL_87172.1
    HL_87172.1
    • Basepair signature: cWW-cWW-R-R-R
    • History status: New id, no parents
    91
    257
    • HL_19673.1
    HL_19673.1
    • Basepair signature: cWW-bif-L-R-R-L-bif-L-cWW-R-R-R
    • History status: New id, no parents
    161
    258
    • HL_52540.1
    HL_52540.1
    • Basepair signature: cWW
    • History status: Exact match
    41
    259
    • HL_62564.1
    HL_62564.1
    • Basepair signature: cWW-tSH-R
    • History status: Exact match
    51
    260
    • HL_82288.1
    HL_82288.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    261
    • HL_14524.1
    HL_14524.1
    • Basepair signature: cWW-cWW-R-R-R-R
    • History status: New id, no parents
    91
    262
    • HL_23628.1
    HL_23628.1
    • Basepair signature: cWW-tWH-R-R
    • History status: New id, no parents
    61
    263
    • HL_45740.1
    HL_45740.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    264
    • HL_56775.1
    HL_56775.1
    • Basepair signature: cWW-cSH-R-R
    • History status: Exact match
    71
    265
    • HL_65107.1
    HL_65107.1
    • Basepair signature: cWW-R-tSH-tHS-R-R-R-R-R-R-R-R-R-R
    • History status: New id, no parents
    181
    266
    • HL_84768.1
    HL_84768.1
    • Basepair signature: cWW-R
    • History status: Exact match
    41
    267
    • HL_94813.1
    HL_94813.1
    • Basepair signature: cWW-cWW-R-tWH-R-R-R-R
    • History status: New id, no parents
    111
    268
    • HL_03785.1
    HL_03785.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    269
    • HL_25947.1
    HL_25947.1
    • Basepair signature: cWW-L-R-R-L-tHW-L-R-R-R-L-cWW-cWW-R-R-R-R
    • History status: New id, no parents
    211
    270
    • HL_59182.1
    HL_59182.1
    • Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    151
    271
    • HL_78422.1
    HL_78422.1
    • Basepair signature: cWW-R-R-R-R-R-R-R
    • History status: New id, 1 parent
  • Pseudoknot geometry (1)
  • 101
    272
    • HL_87223.1
    HL_87223.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    273
    • HL_97784.1
    HL_97784.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    151
    274
    • HL_53015.1
    HL_53015.1
    • Basepair signature: cWW-cSH-tSS-R-R
    • History status: Exact match
    81
    275
    • HL_62880.1
    HL_62880.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    276
    • HL_72389.1
    HL_72389.1
    • Basepair signature: cWW-R-R-R-R-R-R
    • History status: Exact match
    91
    277
    • HL_14536.1
    HL_14536.1
    • Basepair signature: cWW-R-R-R
    • History status: Exact match
    61
    278
    • HL_24108.1
    HL_24108.1
    • Basepair signature: cWW-cWW-R-R-R
    • History status: Exact match
    81
    279
    • HL_46055.1
    HL_46055.1
    • Basepair signature: cWW-R
    • History status: Exact match
    41
    280
    • HL_56809.1
    HL_56809.1
    • Basepair signature: cWW-R
    • History status: Exact match
    41
    281
    • HL_75624.1
    HL_75624.1
    • Basepair signature: cWW-cWW-cWH-R
    • History status: Exact match
    71
    282
    • HL_84888.1
    HL_84888.1
    • Basepair signature: cWW-cWW-R-tSH-R-R
    • History status: Exact match
    91
    283
    • HL_94981.1
    HL_94981.1
    • Basepair signature: cWW-R-R-tWH-R-R-R-R
    • History status: New id, no parents
  • T-loop with unstacked turn (1)
  • 101
    284
    • HL_04305.1
    HL_04305.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    285
    • HL_39422.1
    HL_39422.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    286
    • HL_59225.1
    HL_59225.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    287
    • HL_68435.1
    HL_68435.1
    • Basepair signature: cWW-bif-R-R-R
    • History status: Exact match
    71
    288
    • HL_78507.1
    HL_78507.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    289
    • HL_10075.1
    HL_10075.1
    • Basepair signature: cWW-R-tSH-R-R
    • History status: Exact match
    81
    290
    • HL_30008.1
    HL_30008.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    291
    • HL_53116.1
    HL_53116.1
    • Basepair signature: cWW-R-R-R-R
    • History status: Exact match
    71
    292
    • HL_15291.1
    HL_15291.1
    • Basepair signature: cWW-R-R-R
    • History status: New id, 1 parent
  • GNRA (1)
  • 61
    293
    • HL_24422.1
    HL_24422.1
    • Basepair signature: cWW-R-cWW-R-tSH-R-R-cHW-R-R
    • History status: New id, no parents
    151
    294
    • HL_35865.1
    HL_35865.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    295
    • HL_65428.1
    HL_65428.1
    • Basepair signature: cWW
    • History status: New id, no parents
    31
    296
    • HL_95049.1
    HL_95049.1
    • Basepair signature: cWW-R-R-R-R-R
    • History status: Exact match
    81
    297
    • HL_04382.1
    HL_04382.1
    • Basepair signature: cWW-R-R-R
    • History status: New id, 1 parent
    61
    298
    • HL_26579.1
    HL_26579.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
    51
    299
    • HL_39846.1
    HL_39846.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R
    • History status: Exact match
    311
    300
    • HL_49492.1
    HL_49492.1
    • Basepair signature: cWW-tSH-tHW-cSH-R-R-R-R-R-R-R
    • History status: Exact match
    141
    301
    • HL_59610.1
    HL_59610.1
    • Basepair signature: cWW-R-R
    • History status: Exact match
    51
    302
    • HL_68579.1
    HL_68579.1
    • Basepair signature: cWW-cWW-R
    • History status: Exact match
    61

    Coloring options:


    New id, 2 parents 14; New id, 1 parent 23; Exact match 196; Updated, 1 parent 44; New id, no parents 39; Updated, 2 parents 4; > 2 parents 4;

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