6YHS Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6YHS_001 | 1/1/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_6YHS_002 | 1/1/86:97 | No text annotation Not in a motif group | homologous HL_7A0S_002 HL_05727.1 | |
| HL_6YHS_003 | 1/1/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_6YHS_004 | 1/1/137:142 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_6YHS_005 | 1/1/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_6YHS_006 | 1/1/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_6YHS_007 | 1/1/225:230 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_6YHS_008 | 1/1/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_6YHS_009 | 1/1/300:307 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_6YHS_010 | 1/1/314:318 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_6YHS_011 | 1/1/322:330 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_6YHS_012 | 1/1/374:384 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_6YHS_013 | 1/1/402:409 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
| HL_6YHS_014 | 1/1/454:459 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_6YHS_015 | 1/1/479:485 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_6YHS_016 | 1/1/535:541 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
| HL_6YHS_017 | 1/1/557:566 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_89380.2 | |
| HL_6YHS_018 | 1/1/602:608 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_6YHS_019 | 1/1/620:625 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_6YHS_020 | 1/1/632:638 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_6YHS_021 | 1/1/703:710 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_6YHS_022 | 1/1/735:744 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_6YHS_023 | 1/1/770:776 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
| HL_6YHS_024 | 1/1/817:822 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_6YHS_026 | 1/1/945:952 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_6YHS_027 | 1/1/968:975 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_6YHS_029 | 1/1/1162:1166 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
| HL_6YHS_030 | 1/1/1210:1215 | No text annotation Not in a motif group | homologous HL_4WF9_031 HL_87030.2 | |
| HL_6YHS_031 | 1/1/1269:1277 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_6YHS_032 | 1/1/1312:1318 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_6YHS_033 | 1/1/1351:1356 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_6YHS_034 | 1/1/1377:1386 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_6YHS_035 | 1/1/1439:1447 | No text annotation Not in a motif group | homologous HL_5J7L_169 HL_53837.1 | |
| HL_6YHS_036 | 1/1/1480:1486 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_6YHS_037 | 1/1/1556:1559 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_6YHS_038 | 1/1/1603:1610 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_6YHS_039 | 1/1/1621:1627 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_6YHS_040 | 1/1/1682:1687 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
| HL_6YHS_042 | 1/1/1741:1745 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_6YHS_043 | 1/1/1766:1776 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_6YHS_044 | 1/1/1795:1800 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_6YHS_045 | 1/1/1857:1862 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
| HL_6YHS_046 | 1/1/1899:1909 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_6YHS_047 | 1/1/1938:1946 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_6YHS_048 | 1/1/2016:2025 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_6YHS_050 | 1/1/2198:2204 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_6YHS_051 | 1/1/2237:2245 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.2 | |
| HL_6YHS_052 | 1/1/2253:2265 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_6YHS_053 | 1/1/2292:2302 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_6YHS_054 | 1/1/2313:2320 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_6YHS_055 | 1/1/2344:2351 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_6YHS_056 | 1/1/2363:2368 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_6YHS_057 | 1/1/2393:2402 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_6YHS_058 | 1/1/2460:2468 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
| HL_6YHS_059 | 1/1/2517:2524 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_6YHS_060 | 1/1/2540:2546 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_6YHS_061 | 1/1/2583:2588 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_6YHS_062 | 1/1/2647:2652 | No text annotation Not in a motif group | geometric HL_7RQB_064 HL_42097.1 | |
| HL_6YHS_063 | 1/1/2690:2695 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_6YHS_064 | 1/1/2734:2748 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_6YHS_065 | 1/1/2785:2788 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_53837.1 | |
| HL_6YHS_066 | 1/1/2808:2816 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_6YHS_067 | 1/1/2845:2850 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 | |
| HL_6YHS_068 | 1/5/37:43 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_6YHS_069 | 1/5/84:89 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6YHS_025 | No text annotation | ||
| HL_6YHS_028 | No text annotation | ||
| HL_6YHS_041 | No text annotation | ||
| HL_6YHS_049 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6YHS_001 | 1/1/24:30, 1/1/502:508 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5J7L_245 IL_66414.6 | |
| IL_6YHS_002 | 1/1/36:37, 1/1/434:436 | Single bulged A Not in a motif group | homologous IL_5J7L_246 IL_37497.2 | |
| IL_6YHS_003 | 1/1/43:44, 1/1/426:428 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_6YHS_004 | 1/1/81:85, 1/1/98:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_6YHS_005 | 1/1/183:184, 1/1/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_6YHS_006 | 1/1/188:194, 1/1/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_250 IL_04346.7 | |
| IL_6YHS_007 | 1/1/239:245, 1/1/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_6YHS_008 | 1/1/269:275, 1/1/355:362 | No text annotation Not in a motif group | ||
| IL_6YHS_009 | 1/1/288:290, 1/1/338:342 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_6YHS_010 | 1/1/298:300, 1/1/307:309 | No text annotation Not in a motif group | geometric IL_3BNT_006 IL_95997.1 | |
| IL_6YHS_011 | 1/1/473:476, 1/1/488:501 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_6YHS_012 | 1/1/528:531, 1/1/545:548 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_6YHS_013 | 1/1/555:557, 1/1/566:568 | No text annotation Not in a motif group | homologous IL_5J7L_257 IL_95997.1 | |
| IL_6YHS_014 | 1/1/597:601, 1/1/609:613 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_6YHS_015 | 1/1/663:665, 1/1/797:799 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_6YHS_016 | 1/1/665:669, 1/1/790:797 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_5J7L_260 IL_17470.6 | |
| IL_6YHS_017 | 1/1/688:689, 1/1/754:756 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.2 | |
| IL_6YHS_018 | 1/1/693:694, 1/1/719:721 | Single bulged G Not in a motif group | homologous IL_5J7L_262 IL_00225.2 | |
| IL_6YHS_019 | 1/1/694:698, 1/1/715:719 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_6YHS_020 | 1/1/729:731, 1/1/748:749 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.1 | |
| IL_6YHS_021 | 1/1/733:735, 1/1/744:746 | No text annotation Not in a motif group | homologous IL_7A0S_020 IL_95997.1 | |
| IL_6YHS_022 | 1/1/766:768, 1/1/778:782 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.6 | |
| IL_6YHS_023 | 1/1/828:829, 1/1/930:932 | Single stack bend Not in a motif group | homologous IL_7A0S_022 IL_92001.1 | |
| IL_6YHS_024 | 1/1/834:839, 1/1/921:925 | No text annotation Not in a motif group | ||
| IL_6YHS_025 | 1/1/841:842, 1/1/917:919 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_6YHS_026 | 1/1/847:853, 1/1/906:912 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_6YHS_027 | 1/1/853:854, 1/1/904:906 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_42622.2 | |
| IL_6YHS_028 | 1/1/855:859, 1/1/900:903 | C-loop Not in a motif group | homologous IL_4WF9_033 IL_02509.1 | |
| IL_6YHS_029 | 1/1/861:863, 1/1/896:898 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_6YHS_030 | 1/1/984:986, 1/1/1150:1151 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_6YHS_031 | 1/1/988:992, 1/1/1144:1148 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_6YHS_032 | 1/1/994:1001, 1/1/1141:1142 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_6YHS_033 | 1/1/1001:1003, 1/1/1140:1141 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_6YHS_034 | 1/1/1008:1020, 1/1/1114:1135 | No text annotation Not in a motif group | ||
| IL_6YHS_035 | 1/1/1021:1024, 1/1/1111:1113 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_6YHS_036 | 1/1/1028:1031, 1/1/1104:1107 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_6YHS_037 | 1/1/1184:1186, 1/1/1235:1238 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_52767.2 | |
| IL_6YHS_038 | 1/1/1190:1194, 1/1/1228:1231 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6YHS_039 | 1/1/1196:1203, 1/1/1222:1226 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_6YHS_040 | 1/1/1250:1257, 1/1/2000:2006 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_6YHS_041 | 1/1/1298:1301, 1/1/1594:1595 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_6YHS_042 | 1/1/1307:1311, 1/1/1319:1321 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_6YHS_043 | 1/1/1339:1343, 1/1/1364:1368 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_6YHS_044 | 1/1/1345:1349, 1/1/1358:1362 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_6YHS_045 | 1/1/1403:1405, 1/1/1572:1578 | No text annotation Not in a motif group | ||
| IL_6YHS_046 | 1/1/1405:1409, 1/1/1568:1572 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_6YHS_047 | 1/1/1420:1423, 1/1/1548:1552 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_6YHS_048 | 1/1/1425:1428, 1/1/1542:1546 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_6YHS_049 | 1/1/1438:1439, 1/1/1447:1449 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.13 | |
| IL_6YHS_050 | 1/1/1461:1466, 1/1/1502:1507 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_6YHS_051 | 1/1/1469:1471, 1/1/1494:1499 | No text annotation Not in a motif group | ||
| IL_6YHS_052 | 1/1/1477:1479, 1/1/1487:1488 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_6YHS_053 | 1/1/1642:1647, 1/1/1993:1995 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_6YHS_054 | 1/1/1654:1656, 1/1/1984:1986 | Isolated tWW turn Not in a motif group | homologous IL_7A0S_060 IL_54997.7 | |
| IL_6YHS_055 | 1/1/1657:1660, 1/1/1982:1983 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_306 IL_50694.2 | |
| IL_6YHS_056 | 1/1/1660:1665, 1/1/1979:1982 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
| IL_6YHS_057 | 1/1/1677:1682, 1/1/1687:1693 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_65969.2 | |
| IL_6YHS_058 | 1/1/1759:1760, 1/1/1969:1971 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_6YHS_059 | 1/1/1787:1793, 1/1/1802:1810 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_6YHS_060 | 1/1/1826:1829, 1/1/1891:1892 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_6YHS_061 | 1/1/1830:1831, 1/1/1887:1890 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_6YHS_062 | 1/1/1835:1838, 1/1/1882:1883 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_6YHS_063 | 1/1/1853:1856, 1/1/1863:1867 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_6YHS_064 | 1/1/1922:1923, 1/1/1953:1956 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_318 IL_59677.2 | |
| IL_6YHS_065 | 1/1/1923:1934, 1/1/1950:1953 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_6YHS_066 | 1/1/2038:2041, 1/1/2606:2608 | No text annotation Not in a motif group | geometric IL_6DME_003 IL_63450.2 | |
| IL_6YHS_067 | 1/1/2043:2045, 1/1/2601:2604 | No text annotation Not in a motif group | homologous IL_4WF9_079 IL_54678.5 | |
| IL_6YHS_068 | 1/1/2056:2058, 1/1/2431:2432 | Single bulged U Not in a motif group | homologous IL_4WF9_080 IL_83039.13 | |
| IL_6YHS_069 | 1/1/2059:2060, 1/1/2427:2430 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_6YHS_070 | 1/1/2070:2072, 1/1/2225:2228 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_6YHS_071 | 1/1/2074:2076, 1/1/2221:2223 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_6YHS_072 | 1/1/2191:2193, 1/1/2209:2210 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_6YHS_073 | 1/1/2286:2288, 1/1/2306:2310 | No text annotation Not in a motif group | ||
| IL_6YHS_074 | 1/1/2339:2342, 1/1/2353:2356 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_6YHS_075 | 1/1/2390:2392, 1/1/2403:2404 | No text annotation Not in a motif group | ||
| IL_6YHS_076 | 1/1/2442:2443, 1/1/2487:2489 | Single stack bend Not in a motif group | homologous IL_4WF9_089 IL_76488.2 | |
| IL_6YHS_077 | 1/1/2443:2444, 1/1/2485:2487 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
| IL_6YHS_078 | 1/1/2446:2448, 1/1/2482:2483 | Major groove platform Not in a motif group | homologous IL_7A0S_085 IL_27635.1 | |
| IL_6YHS_079 | 1/1/2448:2450, 1/1/2478:2482 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_337 IL_92788.2 | |
| IL_6YHS_080 | 1/1/2455:2459, 1/1/2469:2473 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_6YHS_081 | 1/1/2496:2497, 1/1/2569:2571 | Major groove platform Not in a motif group | homologous IL_7A0S_088 IL_76223.2 | |
| IL_6YHS_082 | 1/1/2499:2501, 1/1/2563:2567 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_340 IL_90933.2 | |
| IL_6YHS_083 | 1/1/2501:2502, 1/1/2560:2563 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_6YHS_084 | 1/1/2511:2512, 1/1/2529:2532 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_6YHS_085 | 1/1/2580:2581, 1/1/2590:2592 | No text annotation Not in a motif group | ||
| IL_6YHS_086 | 1/1/2625:2629, 1/1/2763:2771 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_6YHS_087 | 1/1/2640:2647, 1/1/2652:2658 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_289 IL_04346.7 | |
| IL_6YHS_088 | 1/1/2669:2673, 1/1/2714:2716 | C-loop Not in a motif group | homologous IL_4WF9_101 IL_63596.6 | |
| IL_6YHS_089 | 1/1/2676:2680, 1/1/2707:2711 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_6YHS_090 | 1/1/2684:2685, 1/1/2700:2703 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_6YHS_091 | 1/1/2726:2731, 1/1/2751:2756 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_6YHS_092 | 1/1/2784:2785, 1/1/2788:2790 | Single bulged U Not in a motif group | geometric IL_7RQB_038 IL_83039.13 | |
| IL_6YHS_093 | 1/1/2795:2800, 1/1/2878:2881 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_6YHS_094 | 1/1/2827:2828, 1/1/2867:2869 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_6YHS_095 | 1/1/2832:2835, 1/1/2859:2863 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_6YHS_096 | 1/1/2836:2841, 1/1/2854:2858 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 | |
| IL_6YHS_097 | 1/5/16:17, 1/5/64:66 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.2 | |
| IL_6YHS_098 | 1/5/21:27, 1/5/55:60 | No text annotation Not in a motif group | ||
| IL_6YHS_099 | 1/5/29:30, 1/5/50:53 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_6YHS_100 | 1/5/33:37, 1/5/43:47 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_6YHS_101 | 1/5/70:78, 1/5/95:103 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6YHS_001 | 1/1/30:31, 1/1/466:473, 1/1/501:502 | No text annotation Not in a motif group | ||
| J3_6YHS_002 | 1/1/56:57, 1/1/70:76, 1/1/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_6YHS_003 | 1/1/674:680, 1/1/764:766, 1/1/782:785 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_6YHS_004 | 1/1/689:691, 1/1/723:727, 1/1/751:754 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_6YHS_005 | 1/1/1286:1291, 1/1/1616:1618, 1/1/1630:1633 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_6YHS_006 | 1/1/1294:1297, 1/1/1596:1602, 1/1/1611:1613 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_6YHS_007 | 1/1/1332:1337, 1/1/1370:1373, 1/1/1390:1391 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_6YHS_008 | 1/1/1432:1433, 1/1/1454:1459, 1/1/1509:1538 | No text annotation Not in a motif group | ||
| J3_6YHS_009 | 1/1/2080:2082, 1/1/2185:2189, 1/1/2212:2217 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_6YHS_010 | 1/1/2284:2286, 1/1/2310:2312, 1/1/2321:2326 | No text annotation Not in a motif group | homologous J3_5J7L_045 NA | |
| J3_6YHS_011 | 1/1/2506:2509, 1/1/2534:2536, 1/1/2550:2556 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_6YHS_012 | 1/1/2778:2780, 1/1/2794:2795, 1/1/2881:2883 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_6YHS_013 | 1/1/2803:2804, 1/1/2820:2825, 1/1/2871:2875 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
| J3_6YHS_014 | 1/5/9:15, 1/5/67:69, 1/5/104:108 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA |
Problematic loops
No problematic loops
Coloring options: