7JQB Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7JQB_001 | 1/A/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_7JQB_002 | 1/A/69:80 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_7JQB_003 | 1/A/156:162 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_7JQB_004 | 1/A/197:202 | GNRA Not in a motif group | geometric HL_4LFB_007 HL_42097.1 | |
| HL_7JQB_005 | 1/A/288:295 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_7JQB_007 | 1/A/377:387 | No text annotation Not in a motif group | ||
| HL_7JQB_008 | 1/A/416:421 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_7JQB_009 | 1/A/441:452 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_7JQB_010 | 1/A/462:467 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_7JQB_011 | 1/A/498:504 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_7JQB_012 | 1/A/539:544 | GNRA Not in a motif group | geometric HL_4V9F_070 HL_42097.1 | |
| HL_7JQB_013 | 1/A/569:581 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_7JQB_014 | 1/A/618:623 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_7JQB_016 | 1/A/820:828 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_7JQB_018 | 1/A/885:901 | No text annotation Not in a motif group | ||
| HL_7JQB_019 | 1/A/957:966 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_7JQB_020 | 1/A/994:999 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_7JQB_021 | 1/A/1054:1064 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_7JQB_022 | 1/A/1114:1119 | No text annotation Not in a motif group | ||
| HL_7JQB_023 | 1/A/1141:1146 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_7JQB_024 | 1/A/1178:1183 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_7JQB_025 | 1/A/1245:1254 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_7JQB_026 | 1/A/1295:1304 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_7JQB_027 | 1/A/1353:1358 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_7JQB_028 | 1/A/1366:1373 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_7JQB_030 | 1/A/1460:1466 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_7JQB_031 | 1/A/1565:1570 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_7JQB_032 | 1/A/1614:1625 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_7JQB_033 | 1/A/1658:1666 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_7JQB_035 | 1/A/1847:1852 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7JQB_006 | No text annotation | ||
| HL_7JQB_015 | No text annotation | ||
| HL_7JQB_017 | No text annotation | ||
| HL_7JQB_029 | No text annotation | ||
| HL_7JQB_034 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7JQB_001 | 1/A/23:25, 1/A/649:651 | No text annotation Not in a motif group | geometric IL_3MEI_002 IL_95997.1 | |
| IL_7JQB_002 | 1/A/34:36, 1/A/519:521 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_7JQB_003 | 1/A/37:40, 1/A/514:518 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.9 | |
| IL_7JQB_004 | 1/A/41:47, 1/A/479:481 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_7JQB_005 | 1/A/49:51, 1/A/476:477 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_7JQB_006 | 1/A/57:62, 1/A/86:88 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_7JQB_007 | 1/A/63:68, 1/A/81:85 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_7JQB_008 | 1/A/108:110, 1/A/351:353 | No text annotation Not in a motif group | geometric IL_1ZX7_004 IL_95997.1 | |
| IL_7JQB_009 | 1/A/110:112, 1/A/349:351 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_7JQB_010 | 1/A/112:115, 1/A/348:349 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_7JQB_011 | 1/A/116:121, 1/A/343:347 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_7JQB_013 | 1/A/145:151, 1/A/167:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_7JQB_014 | 1/A/152:154, 1/A/164:166 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_018 IL_51629.2 | |
| IL_7JQB_015 | 1/A/188:192, 1/A/207:211 | Triple sheared Not in a motif group | geometric IL_4WFL_001 IL_56467.8 | |
| IL_7JQB_016 | 1/A/216:219, 1/A/302:309 | No text annotation Not in a motif group | ||
| IL_7JQB_018 | 1/A/312:314, 1/A/336:337 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_7JQB_019 | 1/A/317:319, 1/A/332:333 | Single stack bend Not in a motif group | geometric IL_5TBW_009 IL_76488.2 | |
| IL_7JQB_020 | 1/A/359:364, 1/A/396:403 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_7JQB_021 | 1/A/366:371, 1/A/393:394 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_7JQB_022 | 1/A/411:413, 1/A/424:429 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_7JQB_023 | 1/A/437:439, 1/A/454:456 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_7JQB_024 | 1/A/459:461, 1/A/468:470 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_7JQB_025 | 1/A/487:489, 1/A/511:512 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_7JQB_026 | 1/A/491:495, 1/A/508:509 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_7JQB_027 | 1/A/495:496, 1/A/506:508 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_7JQB_028 | 1/A/529:530, 1/A/554:556 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.2 | |
| IL_7JQB_029 | 1/A/535:537, 1/A/546:549 | No text annotation Not in a motif group | ||
| IL_7JQB_030 | 1/A/563:565, 1/A/585:592 | No text annotation Not in a motif group | homologous IL_8C3A_420 IL_55023.1 | |
| IL_7JQB_031 | 1/A/566:569, 1/A/581:584 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5C5W_003 IL_30621.2 | |
| IL_7JQB_032 | 1/A/599:608, 1/A/635:637 | No text annotation Not in a motif group | ||
| IL_7JQB_033 | 1/A/611:617, 1/A/624:632 | No text annotation Not in a motif group | homologous IL_8C3A_425 IL_55871.1 | |
| IL_7JQB_034 | 1/A/663:665, 1/A/1162:1164 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_7JQB_035 | 1/A/665:671, 1/A/1161:1162 | No text annotation Not in a motif group | geometric IL_4LFB_022 IL_69996.1 | |
| IL_7JQB_036 | 1/A/673:675, 1/A/1030:1032 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_7JQB_037 | 1/A/676:680, 1/A/1025:1029 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_7JQB_038 | 1/A/692:696, 1/A/730:734 | No text annotation Not in a motif group | ||
| IL_7JQB_039 | 1/A/752:755, 1/A/789:791 | No text annotation Not in a motif group | ||
| IL_7JQB_040 | 1/A/802:803, 1/A/860:863 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_7JQB_041 | 1/A/805:807, 1/A/856:858 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_7JQB_042 | 1/A/807:815, 1/A/849:856 | No text annotation Not in a motif group | geometric IL_4V88_425 IL_69091.1 | |
| IL_7JQB_043 | 1/A/874:876, 1/A/910:912 | No text annotation Not in a motif group | geometric IL_5Y85_006 IL_95997.1 | |
| IL_7JQB_044 | 1/A/877:879, 1/A/907:909 | No text annotation Not in a motif group | geometric IL_5J7L_061 IL_95997.1 | |
| IL_7JQB_045 | 1/A/922:923, 1/A/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_7JQB_046 | 1/A/924:927, 1/A/1014:1018 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_7JQB_047 | 1/A/927:931, 1/A/1010:1014 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_7JQB_048 | 1/A/931:935, 1/A/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_7JQB_049 | 1/A/942:945, 1/A/981:984 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_7JQB_050 | 1/A/952:956, 1/A/967:974 | Kink-turn Not in a motif group | homologous IL_4V88_434 IL_45067.2 | |
| IL_7JQB_051 | 1/A/1042:1047, 1/A/1071:1073 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_7JQB_052 | 1/A/1047:1051, 1/A/1067:1071 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.1 | |
| IL_7JQB_053 | 1/A/1091:1093, 1/A/1152:1158 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_7JQB_054 | 1/A/1098:1101, 1/A/1131:1134 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_7JQB_055 | 1/A/1101:1103, 1/A/1129:1131 | No text annotation Not in a motif group | geometric IL_4V9F_105 IL_95997.1 | |
| IL_7JQB_056 | 1/A/1108:1110, 1/A/1123:1124 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_7JQB_057 | 1/A/1168:1175, 1/A/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_7JQB_058 | 1/A/1203:1204, 1/A/1694:1696 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_7JQB_059 | 1/A/1206:1208, 1/A/1691:1692 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_7JQB_060 | 1/A/1214:1217, 1/A/1681:1685 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_7JQB_061 | 1/A/1230:1232, 1/A/1526:1528 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_7JQB_062 | 1/A/1235:1236, 1/A/1521:1523 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_7JQB_063 | 1/A/1269:1272, 1/A/1510:1513 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_7A0S_040 IL_30621.2 | |
| IL_7JQB_064 | 1/A/1281:1287, 1/A/1314:1316 | No text annotation Not in a motif group | ||
| IL_7JQB_065 | 1/A/1287:1290, 1/A/1309:1314 | No text annotation Not in a motif group | ||
| IL_7JQB_066 | 1/A/1291:1294, 1/A/1305:1308 | No text annotation Not in a motif group | ||
| IL_7JQB_067 | 1/A/1325:1327, 1/A/1502:1503 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_7JQB_068 | 1/A/1329:1333, 1/A/1498:1500 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_7JQB_069 | 1/A/1333:1335, 1/A/1492:1498 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_7JQB_070 | 1/A/1337:1338, 1/A/1488:1490 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_7JQB_071 | 1/A/1347:1349, 1/A/1380:1382 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_7JQB_072 | 1/A/1363:1365, 1/A/1374:1375 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_42622.2 | |
| IL_7JQB_073 | 1/A/1395:1399, 1/A/1447:1450 | No text annotation Not in a motif group | ||
| IL_7JQB_074 | 1/A/1402:1405, 1/A/1441:1444 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_7JQB_075 | 1/A/1411:1414, 1/A/1426:1430 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_30621.2 | |
| IL_7JQB_076 | 1/A/1537:1539, 1/A/1594:1596 | No text annotation Not in a motif group | geometric IL_4KNQ_003 IL_95997.1 | |
| IL_7JQB_077 | 1/A/1550:1558, 1/A/1577:1582 | No text annotation Not in a motif group | geometric IL_5J7L_055 IL_75461.4 | |
| IL_7JQB_078 | 1/A/1560:1562, 1/A/1573:1575 | No text annotation Not in a motif group | geometric IL_3SZX_001 IL_95997.1 | |
| IL_7JQB_079 | 1/A/1604:1610, 1/A/1629:1635 | No text annotation Not in a motif group | ||
| IL_7JQB_080 | 1/A/1700:1702, 1/A/1833:1836 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_7JQB_081 | 1/A/1702:1705, 1/A/1829:1833 | No text annotation Not in a motif group | homologous IL_4V88_464 IL_99670.1 | |
| IL_7JQB_082 | 1/A/1706:1708, 1/A/1826:1828 | No text annotation Not in a motif group | geometric IL_3GM7_003 IL_95997.1 | |
| IL_7JQB_083 | 1/A/1708:1711, 1/A/1822:1826 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_010 IL_30621.2 | |
| IL_7JQB_084 | 1/A/1714:1716, 1/A/1817:1819 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_7JQB_085 | 1/A/1717:1720, 1/A/1813:1816 | Double sheared Not in a motif group | homologous IL_4V88_468 IL_09705.9 | |
| IL_7JQB_086 | 1/A/1720:1722, 1/A/1812:1813 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.13 | |
| IL_7JQB_087 | 1/A/1729:1731, 1/A/1803:1805 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_7JQB_088 | 1/A/1733:1736, 1/A/1798:1801 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_7JQB_089 | 1/A/1739:1741, 1/A/1793:1795 | No text annotation Not in a motif group | geometric IL_4E48_004 IL_95997.1 | |
| IL_7JQB_090 | 1/A/1742:1746, 1/A/1788:1792 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_7JQB_091 | 1/A/1750:1751, 1/A/1782:1784 | Major groove platform Not in a motif group | geometric IL_3OXE_003 IL_27635.1 | |
| IL_7JQB_092 | 1/A/1751:1752, 1/A/1780:1782 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7JQB_012 | No text annotation | ||
| IL_7JQB_017 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7JQB_001 | 1/A/40:41, 1/A/481:487, 1/A/512:514 | No text annotation Not in a motif group | ||
| J3_7JQB_002 | 1/A/682:685, 1/A/917:922, 1/A/1022:1023 | No text annotation Not in a motif group | ||
| J3_7JQB_003 | 1/A/816:819, 1/A/829:831, 1/A/843:848 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_7JQB_004 | 1/A/938:941, 1/A/985:993, 1/A/1000:1004 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_7JQB_005 | 1/A/1094:1096, 1/A/1136:1140, 1/A/1147:1151 | No text annotation Not in a motif group | ||
| J3_7JQB_006 | 1/A/1218:1221, 1/A/1645:1651, 1/A/1673:1680 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_7JQB_007 | 1/A/1225:1228, 1/A/1530:1532, 1/A/1638:1641 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_7JQB_008 | 1/A/1237:1244, 1/A/1255:1266, 1/A/1516:1520 | No text annotation Not in a motif group | ||
| J3_7JQB_009 | 1/A/1272:1277, 1/A/1320:1324, 1/A/1504:1510 | No text annotation Not in a motif group | homologous J3_8C3A_041 NA | |
| J3_7JQB_010 | 1/A/1340:1345, 1/A/1384:1390, 1/A/1480:1486 | No text annotation Not in a motif group | ||
| J3_7JQB_011 | 1/A/1350:1351, 1/A/1360:1363, 1/A/1375:1379 | No text annotation Not in a motif group | ||
| J3_7JQB_012 | 1/A/1391:1395, 1/A/1450:1456, 1/A/1470:1479 | No text annotation Not in a motif group | ||
| J3_7JQB_013 | 1/A/1532:1536, 1/A/1597:1604, 1/A/1635:1638 | No text annotation Not in a motif group | homologous J3_4V88_041 NA |
Problematic loops
No problematic loops
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