#Varna 2DMotifNtsSize
1
  • HL_67042.16
HL_67042.16
  • Basepair signature: cWW-tSH-R-R
  • History status: Updated, 1 parent
  • Name: GNRA Hairpin motifs
6321
2
  • HL_72498.16
HL_72498.16
  • Basepair signature: cWW-tWH-R-R-R
  • History status: Updated, 1 parent
  • Name: T-loops with two bulged bases
976
3
  • HL_39895.10
HL_39895.10
  • Basepair signature: cWW-tSW-R
  • History status: Updated, 1 parent
  • Name: UNCG Hairpin motifs
645
4
  • HL_18781.8
HL_18781.8
  • Basepair signature: cWW-tSH-R-R-R-R
  • History status: Updated, 1 parent
  • Name: Double sheared (tSH) with U-turn
830
5
  • HL_91226.7
HL_91226.7
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Updated, 1 parent
  • Name: Kissing Hairpin motif
823
6
  • HL_97270.7
HL_97270.7
  • Basepair signature: cWW-tWH-R-R-R
  • History status: Updated, 1 parent
  • Name: T-loops with 1 bulged base
721
7
  • HL_37020.2
HL_37020.2
  • Basepair signature: cWW-R-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 91 (H91) Hairpin Loop | LSU Helix 92 (H92) A-site Loop. GNRA-like with extra stacked base. | LSU Helix 11 (H11) Hairpin Loop. GNRA-like. | LSU Helix 92 (H92) A-site Loop. GNRA-like with extra stacked base. | LSU Helix 80 (H80) P-site Hairpin Loop.
720
8
  • HL_46175.5
HL_46175.5
  • Basepair signature: cWW-R-tSH-R-R-R-R
  • History status: Exact match
  • Name: SSU Helix 43 (h43) Hairpin Loop E.coli | 16S helix 23 and 24 hairpin loops | 16S helix 23 and 24 hairpin loops
1018
9
  • HL_74411.2
HL_74411.2
  • Basepair signature: cWW-tSH-R-R
  • History status: Updated, 1 parent
  • Name: GNRA with one bulged base | GNRA-like with bulged base. | GNRA with one bulged base | GNRA Hairpin motifs | LSU Helix 11 (H11) Hairpin Loop. GNRA-like. | GNRA with one bulged base
618
10
  • HL_74465.6
HL_74465.6
  • Basepair signature: cWW-bif-R-tSH-R-R
  • History status: Exact match
  • Name: tRNA Anti-Codon loop
916
11
  • HL_75759.8
HL_75759.8
  • Basepair signature: cWW-R
  • History status: Updated, 1 parent
416
12
  • HL_27271.4
HL_27271.4
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
  • Name: LSU Helix 96 (H96) Hairpin Loop
615
13
  • HL_56824.6
HL_56824.6
  • Basepair signature: cWW-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 60A. LSU Helix 63A.
514
14
  • HL_33402.7
HL_33402.7
  • Basepair signature: cWW-tSH-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 13 (H13) Hairpin loop. GNRA-like.
714
15
  • HL_68081.7
HL_68081.7
  • Basepair signature: cWW-R-R-tWH-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 20 Hairpin loop
813
16
  • HL_82294.5
HL_82294.5
  • Basepair signature: cWW-cWW-R-R
  • History status: Exact match
  • Name: SSU Helix 37 (h37) Hairpin loop.
713
17
  • HL_48039.3
HL_48039.3
  • Basepair signature: cWW-R
  • History status: Exact match
  • Name: MS2 virus RNA Hairpin
412
18
  • HL_80459.7
HL_80459.7
  • Basepair signature: cWW-R-R
  • History status: Updated, 1 parent
611
19
  • HL_34027.6
HL_34027.6
  • Basepair signature: cWW-R-R-R
  • History status: Updated, 1 parent
  • Name: 5S Loop C - Upper part of Hairpin Loop.
611
20
  • HL_11547.6
HL_11547.6
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 92 (H92) A-site Loop. GNRA-like with extra stacked base. | LSU Helix 80 (H80) P-site Hairpin Loop. | LSU Helix 80 (H80) P-site Hairpin Loop.
811
21
  • HL_48507.2
HL_48507.2
  • Basepair signature: cWW-tSH-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 92 (H92) A-site Loop. GNRA-like with extra stacked base. | LSU Helix 11 (H11) Hairpin Loop. GNRA-like. | LSU Helix 11 (H11) Hairpin Loop. GNRA-like. | GNRA with one bulged base
711
22
  • HL_75579.6
HL_75579.6
  • Basepair signature: cWW
  • History status: Updated, 1 parent
310
23
  • HL_24544.5
HL_24544.5
  • Basepair signature: cWW-tWH-R-tSH-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 53 (H53) Hairpin Loop. T-loop like.
910
24
  • HL_17723.6
HL_17723.6
  • Basepair signature: cWW-R-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 22 (H22) Hairpin Loop. Forms Pseudknot.
710
25
  • HL_89482.2
HL_89482.2
  • Basepair signature: cWW-tWH-R-R-R
  • History status: Exact match
  • Name: LSU Helix 92 (H92) A-site Loop. GNRA-like with extra stacked base. | LSU Helix 80 (H80) P-site Hairpin Loop.
710
26
  • HL_18156.6
HL_18156.6
  • Basepair signature: cWW-R-R-tWH-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 72 (H72) Hairpin Loop
1010
27
  • HL_41833.6
HL_41833.6
  • Basepair signature: cWW-tSH-tHH-tWW-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 81 (H81) Hairpin Loop
1310
28
  • HL_34108.6
HL_34108.6
  • Basepair signature: cWW-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 37 (H37) Hairpin Loop.
610
29
  • HL_87136.6
HL_87136.6
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 39A Hairpin loop
810
30
  • HL_46489.6
HL_46489.6
  • Basepair signature: cWW-tSH-R-R-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU H89 Hairpin Loop
99
31
  • HL_70420.6
HL_70420.6
  • Basepair signature: cWW-tSH-cWH-tSH-tWH-R-tHW-tHW-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 97 Hairpin loop
159
32
  • HL_39872.6
HL_39872.6
  • Basepair signature: cWW-cSW-R-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 99A (H99A) Hairpin Loop. Closed by cSW AA.
89
33
  • HL_15603.2
HL_15603.2
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R
  • History status: Exact match
  • Name: U1A protein-binding Hairpin Loop.
129
34
  • HL_85534.5
HL_85534.5
  • Basepair signature: cWW-tWH-tWH-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 65 (H65) Hairpin Loop. T-loop like.
119
35
  • HL_01926.7
HL_01926.7
  • Basepair signature: cWW-bif-R-tSH-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 71 (H71) Hairpin Loop.
99
36
  • HL_57087.1
HL_57087.1
  • Basepair signature: cWW-R
  • History status: Exact match
  • Name: Two base, cross-stacked hairpin loop
48
37
  • HL_11509.6
HL_11509.6
  • Basepair signature: cWW-R-R-cSH-cSH-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 6 (H6) Hairpin Loop.
108
38
  • HL_88311.6
HL_88311.6
  • Basepair signature: cWW-R-tSW-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 35 (H35) Hairpin Loop
108
39
  • HL_42677.2
HL_42677.2
  • Basepair signature: cWW
  • History status: Exact match
57
40
  • HL_19626.3
HL_19626.3
  • Basepair signature: cWW-cSW-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 28 (H28) Hairpin Loop | LSU Helix 12 (H12) Hairpin Loop. GNRA-like with altered stacking | LSU Helix 12 (H12) Hairpin Loop. GNRA-like with altered stacking
67
41
  • HL_99908.4
HL_99908.4
  • Basepair signature: cWW-cSH-tHW-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 69 (H69) Hairpin Loop
107
42
  • HL_00311.1
HL_00311.1
  • Basepair signature: cWW-R-tHW-R-R-R-R-R-R
  • History status: Exact match
  • Name: SSU Central Pseudoknot (forms helix 2)
117
43
  • HL_62228.6
HL_62228.6
  • Basepair signature: cWW-R-tSW-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 35A (H35A) Hairpin Loop
67
44
  • HL_27353.1
HL_27353.1
  • Basepair signature: cWW
  • History status: Exact match
  • Name: UNCG-like. cWW Closing pair. | UNCG-like. cWW Closing pair. | UNCG-like. cWW Closing pair. | LSU: Part of IL/3WJ between H55 and H56.
47
45
  • HL_82538.5
HL_82538.5
  • Basepair signature: cWW-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 12 (H12) Hairpin Loop. GNRA-like with altered stacking
57
46
  • HL_20199.1
HL_20199.1
  • Basepair signature: cWW-R-R-R-R-R-R
  • History status: > 2 parents
  • Name: SSU Central Pseudoknot (forms helix 2) | LSU Helix 69 (H69) Hairpin Loop | LSU Helix 7 (H7) Hairpin Loop. Forms Pseudo-knot
96
47
  • HL_06643.3
HL_06643.3
  • Basepair signature: cWW-cSH
  • History status: Exact match
  • Name: tRNA D-loop. Sec tRNA
56
48
  • HL_48254.4
HL_48254.4
  • Basepair signature: cWW-cWH-R-R-R-R
  • History status: Exact match
  • Name: LSU Helix 84 (H84) Hairpin Loop.
96
49
  • HL_45018.4
HL_45018.4
  • Basepair signature: cWW-cWW-R-cSS-cSS-R
  • History status: Exact match
  • Name: Hairpin-Hairpin Interacting HL
116
50
  • HL_64543.4
HL_64543.4
  • Basepair signature: cWW-R-cSS-R-R-R-R
  • History status: Exact match
  • Name: SSU Helix 31 (h31) Hairpin Loop
106
51
  • HL_66174.3
HL_66174.3
  • Basepair signature: cWW-R-cSW-R-cSH
  • History status: Updated, 1 parent
  • Name: cHS GU/cWS Double Platform creates Intercalation site
96
52
  • HL_72543.3
HL_72543.3
  • Basepair signature: cWW-tSH-R-R-R-R-R-R
  • History status: Exact match
  • Name: LSU Helix 43 (H43) Hairpin Loop. T-loop Like.
116
53
  • HL_95720.1
HL_95720.1
  • Basepair signature: cWW-R-tSH-R-R
  • History status: Exact match
  • Name: Double tSH (double sheared) with bulged base | LSU Helix 71 (H71) Hairpin Loop. | Double tSH (double sheared) with bulged base
85
54
  • HL_55035.1
HL_55035.1
  • Basepair signature: cWW-cWW-R-R-R-R-R-R
  • History status: Exact match
  • Name: SSU Helix 43 (h43) Hairpin Loop from T.th. T-loop like.
115
55
  • HL_72273.1
HL_72273.1
  • Basepair signature: cWW-cWS-R-R
  • History status: Exact match
  • Name: tRNA D-loop
95
56
  • HL_86077.3
HL_86077.3
  • Basepair signature: cWW-tSH-R-R
  • History status: Updated, 1 parent
  • Name: GNRA with one bulged base | GNRA-like with bulged base.
75
57
  • HL_94364.1
HL_94364.1
  • Basepair signature: cWW-R-tWH-R-tWH-R-R-R
  • History status: Exact match
125
58
  • HL_86115.2
HL_86115.2
  • Basepair signature: cWW-cWS
  • History status: Exact match
45
59
  • HL_00415.1
HL_00415.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
  • Name: GNRA-like. Closed by tSH UC.
75
60
  • HL_72372.1
HL_72372.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R
  • History status: Exact match
125
61
  • HL_39203.1
HL_39203.1
  • Basepair signature: cWW-cWW-R-tSW-R
  • History status: Exact match
95
62
  • HL_08382.4
HL_08382.4
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
65
63
  • HL_89131.1
HL_89131.1
  • Basepair signature: cWW-cWH-R-R-tWH-R-R-R
  • History status: Exact match
114
64
  • HL_28422.2
HL_28422.2
  • Basepair signature: cWW-R-R
  • History status: Updated, 2 parents
74
65
  • HL_48116.3
HL_48116.3
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
  • Name: GNRA-like with 5'-stacking of first unpaired base.
64
66
  • HL_34954.1
HL_34954.1
  • Basepair signature: cWW-R-R-R-R-tSH-R-R-R-R
  • History status: Exact match
134
67
  • HL_31147.1
HL_31147.1
  • Basepair signature: cWW-R-R-R-R-R-R-R
  • History status: Exact match
  • Name: SSU Central Pseudoknot (forms helix 2)
104
68
  • HL_19905.4
HL_19905.4
  • Basepair signature: cWW-R
  • History status: Exact match
  • Name: LSU: Part of IL/3WJ between H55 and H56.
44
69
  • HL_23182.2
HL_23182.2
  • Basepair signature: cWW-cWW-R-R-R-R-R
  • History status: Exact match
104
70
  • HL_66677.2
HL_66677.2
  • Basepair signature: cWW-tSW-R
  • History status: Exact match
64
71
  • HL_62881.1
HL_62881.1
  • Basepair signature: cWW-tSH-tHW-R-tSW-R-R
  • History status: Exact match
  • Name: RNase P Structured Hairpin Loop
104
72
  • HL_61547.5
HL_61547.5
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
  • Name: LSU Helix 12 (H12) Hairpin Loop. GNRA-like with altered stacking
64
73
  • HL_43357.2
HL_43357.2
  • Basepair signature: cWW-cWW-R-R-R-R-R
  • History status: Updated, 2 parents
  • Name: SSU Central Pseudoknot (forms helix 2)
104
74
  • HL_11376.1
HL_11376.1
  • Basepair signature: cWW
  • History status: Exact match
  • Name: LSU Helix 8 (H8) Hairpin Loop
54
75
  • HL_92706.1
HL_92706.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: LSU Helix 28 (H28) Hairpin Loop | LSU Helix 12 (H12) Hairpin Loop. GNRA-like with altered stacking
64
76
  • HL_72846.1
HL_72846.1
  • Basepair signature: cWW-tSH-R-R-R-R-R
  • History status: New id, 1 parent
  • Name: LSU Helix 69 (H69) Hairpin Loop
104
77
  • HL_79956.2
HL_79956.2
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
  • Name: GNRA-like with 5'-stacking of first unpaired base.
64
78
  • HL_18587.3
HL_18587.3
  • Basepair signature: cWW-R-tWH-R-R-R
  • History status: Exact match
94
79
  • HL_96915.3
HL_96915.3
  • Basepair signature: cWW-R-R-R-R-R-R
  • History status: Exact match
94
80
  • HL_82418.2
HL_82418.2
  • Basepair signature: cWW-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 8 (H8) Hairpin Loop
64
81
  • HL_12908.1
HL_12908.1
  • Basepair signature: cWW-R-R-R-R-R-R
  • History status: New id, 2 parents
  • Name: LSU Helix 7 (H7) Hairpin Loop. Forms Pseudo-knot
94
82
  • HL_25124.2
HL_25124.2
  • Basepair signature: cWW-tSW-R
  • History status: Exact match
  • Name: tSW GA closed tetraloops
64
83
  • HL_91142.1
HL_91142.1
  • Basepair signature: cWW-R
  • History status: Exact match
  • Name: Double 5'-stacked purine Hairpin Loop from Eukaryal LSU
63
84
  • HL_21545.2
HL_21545.2
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
  • Name: LSU Helix 96 (H96) Hairpin Loop
63
85
  • HL_59516.1
HL_59516.1
  • Basepair signature: cWW-R-R-R-R-R-R
  • History status: > 2 parents
  • Name: cHS GU/cWS Double Platform creates Intercalation site
93
86
  • HL_27429.5
HL_27429.5
  • Basepair signature: cWW-R-R-R-R-R-R-R
  • History status: Updated, 1 parent
113
87
  • HL_78361.1
HL_78361.1
  • Basepair signature: cWW-R-cSS-R-R
  • History status: Exact match
93
88
  • HL_74307.1
HL_74307.1
  • Basepair signature: cWW-tSH-tSH-R
  • History status: Exact match
83
89
  • HL_91693.2
HL_91693.2
  • Basepair signature: cWW-R-R
  • History status: Exact match
53
90
  • HL_06122.2
HL_06122.2
  • Basepair signature: cWW-cSS-cSH
  • History status: Exact match
83
91
  • HL_58083.3
HL_58083.3
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
113
92
  • HL_55684.1
HL_55684.1
  • Basepair signature: cWW-tSH-R-R
  • History status: Exact match
63
93
  • HL_01788.2
HL_01788.2
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
  • Name: LSU Yeast Hairpin Loop
83
94
  • HL_64371.4
HL_64371.4
  • Basepair signature: cWW-tSH-R-R-R-R-R-R-R
  • History status: Updated, 2 parents
  • Name: SSU Central Pseudoknot (forms helix 2)
123
95
  • HL_19033.1
HL_19033.1
  • Basepair signature: cWW-cWW-R-R-R-R-R
  • History status: Exact match
  • Name: SSU Helix 43 (h43) Hairpin Loop E.coli | 16S helix 23 and 24 hairpin loops
113
96
  • HL_28339.2
HL_28339.2
  • Basepair signature: cWW-R
  • History status: Exact match
43
97
  • HL_13707.2
HL_13707.2
  • Basepair signature: cWW-tHH-cSH-R-R
  • History status: Exact match
  • Name: cSH AA Platform containing Hairpin Loop
93
98
  • HL_95969.1
HL_95969.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
  • Name: LSU Helix 71 (H71) Hairpin Loop. | Double tSH (double sheared) with bulged base
73
99
  • HL_18474.1
HL_18474.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
  • Name: LSU Helix 71 (H71) Hairpin Loop. | Double tSH (double sheared) with bulged base
83
100
  • HL_65249.2
HL_65249.2
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
63
101
  • HL_60200.2
HL_60200.2
  • Basepair signature: cWW-tWH-R-R-R-R
  • History status: Exact match
103
102
  • HL_21419.2
HL_21419.2
  • Basepair signature: cWW
  • History status: Updated, 1 parent
  • Name: UNCG-like. cWW Closing pair. | UNCG-like. cWW Closing pair. | LSU: Part of IL/3WJ between H55 and H56.
53
103
  • HL_42094.2
HL_42094.2
  • Basepair signature: cWW-cWS-R-R-R
  • History status: Exact match
93
104
  • HL_06997.2
HL_06997.2
  • Basepair signature: cWW-tWH-R-R-R-R-R-R-R
  • History status: Exact match
133
105
  • HL_76766.4
HL_76766.4
  • Basepair signature: cWW-tSH-R
  • History status: Exact match
63
106
  • HL_98833.3
HL_98833.3
  • Basepair signature: cWW-cWS-R-R-R-R
  • History status: Exact match
113
107
  • HL_80492.2
HL_80492.2
  • Basepair signature: cWW-tSH-cWS-cWS-R
  • History status: Exact match
  • Name: tRNA D-loop
133
108
  • HL_15701.1
HL_15701.1
  • Basepair signature: cWW-cWW-cWW-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
173
109
  • HL_84911.1
HL_84911.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
153
110
  • HL_19221.2
HL_19221.2
  • Basepair signature: cWW-R-cSH
  • History status: Exact match
63
111
  • HL_41827.1
HL_41827.1
  • Basepair signature: cWW-R-tSW-R-R
  • History status: Exact match
73
112
  • HL_94578.2
HL_94578.2
  • Basepair signature: cWW-cWS-R-R
  • History status: Exact match
83
113
  • HL_69907.1
HL_69907.1
  • Basepair signature: cWW-R
  • History status: Exact match
72
114
  • HL_50312.1
HL_50312.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
62
115
  • HL_86123.2
HL_86123.2
  • Basepair signature: cWW-R-R-R-tWH-R-R-R
  • History status: Exact match
  • Name: SSU Helix 42 (h42) Hairpin Loop. T-loop like.
102
116
  • HL_87554.1
HL_87554.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
52
117
  • HL_51271.1
HL_51271.1
  • Basepair signature: cWW-R
  • History status: New id, 1 parent
62
118
  • HL_29892.1
HL_29892.1
  • Basepair signature: cWW-cWW-R-R
  • History status: Exact match
82
119
  • HL_19399.1
HL_19399.1
  • Basepair signature: cWW-R-R-R-R-R-cSW-R-R-R-R-R-R
  • History status: Exact match
172
120
  • HL_72489.1
HL_72489.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R
  • History status: Exact match
132
121
  • HL_46388.1
HL_46388.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
52
122
  • HL_24711.1
HL_24711.1
  • Basepair signature: cWW-tWH-R-R-R
  • History status: Exact match
82
123
  • HL_24473.3
HL_24473.3
  • Basepair signature: cWW-tSH-cWS-tSW-R-R-R-R-R
  • History status: Exact match
  • Name: tRNA D-loop
152
124
  • HL_65924.1
HL_65924.1
  • Basepair signature: cWW-cWW-R-R-tWH-R-tWH-R-R-R
  • History status: Exact match
142
125
  • HL_93771.1
HL_93771.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
  • Name: tRNA T-loop distorted by RS binding
62
126
  • HL_49961.1
HL_49961.1
  • Basepair signature: cWW-R-R
  • History status: New id, 2 parents
62
127
  • HL_44467.1
HL_44467.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
122
128
  • HL_41700.1
HL_41700.1
  • Basepair signature: cWW-R-R-R-R-R-R
  • History status: Exact match
112
129
  • HL_84172.1
HL_84172.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
82
130
  • HL_84548.1
HL_84548.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
  • Name: LSU Helix 71 (H71) Hairpin Loop. | Double tSH (double sheared) with bulged base
82
131
  • HL_27478.1
HL_27478.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R
  • History status: Exact match
122
132
  • HL_38130.2
HL_38130.2
  • Basepair signature: cWW-R-R-R-R-R-R-R-R
  • History status: Exact match
112
133
  • HL_54719.1
HL_54719.1
  • Basepair signature: cWW-R
  • History status: Exact match
  • Name: Two base, cross-stacked hairpin loop
52
134
  • HL_05361.1
HL_05361.1
  • Basepair signature: cWW-cWW-R
  • History status: Exact match
92
135
  • HL_74026.1
HL_74026.1
  • Basepair signature: cWW-cWW-cWW-R-R-R-R-R-R-R
  • History status: Exact match
142
136
  • HL_42436.1
HL_42436.1
  • Basepair signature: cWW-tHW-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
  • Name: Kissing Hairpin from di-GMP-II riboswitch
162
137
  • HL_42077.3
HL_42077.3
  • Basepair signature: cWW-tSH-R
  • History status: Exact match
  • Name: LSU Helix 28 (H28) Hairpin Loop
72
138
  • HL_01766.1
HL_01766.1
  • Basepair signature: cWW-R-tSW-cSS-R
  • History status: Exact match
  • Name: LSU Helix 35 (H35) Hairpin Loop from Yeast
102
139
  • HL_50937.1
HL_50937.1
  • Basepair signature: cWW-R-R-R-R-R-R-R
  • History status: Exact match
102
140
  • HL_35652.1
HL_35652.1
  • Basepair signature: cWW-R-cHH-R-R-R-R-R
  • History status: New id, 1 parent
  • Name: LSU Helix 84 (H84) Hairpin Loop. E.coli.
112
141
  • HL_92260.1
HL_92260.1
  • Basepair signature: cWW-R
  • History status: Exact match
52
142
  • HL_77391.1
HL_77391.1
  • Basepair signature: cWW
  • History status: Exact match
42
143
  • HL_42553.1
HL_42553.1
  • Basepair signature: cWW-tSH-R-cWS-R-R-R
  • History status: Exact match
132
144
  • HL_34912.1
HL_34912.1
  • Basepair signature: cWW-R
  • History status: Exact match
52
145
  • HL_20004.1
HL_20004.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
62
146
  • HL_49210.1
HL_49210.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
92
147
  • HL_82382.1
HL_82382.1
  • Basepair signature: cWW-cWW-R-tWH-R-R-R-R-R
  • History status: Exact match
132
148
  • HL_26495.1
HL_26495.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
82
149
  • HL_01389.1
HL_01389.1
  • Basepair signature: cWW
  • History status: Exact match
52
150
  • HL_33451.1
HL_33451.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R
  • History status: Exact match
132
151
  • HL_98577.1
HL_98577.1
  • Basepair signature: cWW-R-R-tHW-R-R-R-R-R-R-R
  • History status: Exact match
142
152
  • HL_94212.1
HL_94212.1
  • Basepair signature: cWW-R-R-R-R-R-R-R
  • History status: New id, 2 parents
  • Name: 16S helix 23 and 24 hairpin loops
102
153
  • HL_64438.1
HL_64438.1
  • Basepair signature: cWW-tSH-tHS-R-R-R-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
  • Name: Kink-turn-like Hairpin Loop
212
154
  • HL_23290.1
HL_23290.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
82
155
  • HL_57263.1
HL_57263.1
  • Basepair signature: cWW-R-R
  • History status: New id, 1 parent
62
156
  • HL_70383.1
HL_70383.1
  • Basepair signature: cWW-cWW-R-R-R-R-R
  • History status: Exact match
  • Name: GNRA-like
102
157
  • HL_15793.1
HL_15793.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
  • Name: UNCG-like. cWW Closing pair.
62
158
  • HL_77692.1
HL_77692.1
  • Basepair signature: cWW-tSH-cWS-cSH-R-R
  • History status: Exact match
  • Name: tRNA D-loop
111
159
  • HL_85044.1
HL_85044.1
  • Basepair signature: cWW-tSH-R-R-R-R-R-R-R
  • History status: Exact match
  • Name: LSU Helix 10 (H10) Hairpin E.coli
121
160
  • HL_95822.1
HL_95822.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R
  • History status: Exact match
111
161
  • HL_11257.1
HL_11257.1
  • Basepair signature: cWW-cSW-R-R-R
  • History status: Exact match
71
162
  • HL_08203.1
HL_08203.1
  • Basepair signature: cWW-cWW-tWH-tHH-R
  • History status: Exact match
131
163
  • HL_96515.1
HL_96515.1
  • Basepair signature: cWW-tSH-R-R-R
  • History status: Exact match
  • Name: LSU Helix 92 (H92) A-site Loop. GNRA-like with extra stacked base. | LSU Helix 11 (H11) Hairpin Loop. GNRA-like.
81
164
  • HL_50078.1
HL_50078.1
  • Basepair signature: cWW-cWH-R-R-R-R-R
  • History status: Exact match
101
165
  • HL_48480.1
HL_48480.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
91
166
  • HL_68435.1
HL_68435.1
  • Basepair signature: cWW-bif-R-R-R
  • History status: Exact match
91
167
  • HL_75624.1
HL_75624.1
  • Basepair signature: cWW-cWW-cWH-R
  • History status: Exact match
91
168
  • HL_72389.1
HL_72389.1
  • Basepair signature: cWW-R-R-R-R-R-R
  • History status: Exact match
91
169
  • HL_56775.1
HL_56775.1
  • Basepair signature: cWW-cSH-R-R
  • History status: Exact match
91
170
  • HL_10075.1
HL_10075.1
  • Basepair signature: cWW-R-tSH-R-R
  • History status: Exact match
91
171
  • HL_61871.1
HL_61871.1
  • Basepair signature: cWW-cSH-cWW-bif-R-R-R-R
  • History status: Exact match
121
172
  • HL_30366.1
HL_30366.1
  • Basepair signature: cWW-tSH-tHW-tHW-cSH-R
  • History status: Exact match
  • Name: LSU Helix 10 (H10) Hairpin E.coli
111
173
  • HL_84289.1
HL_84289.1
  • Basepair signature: cWW-cWW-R-R-R-R-R-R
  • History status: Exact match
131
174
  • HL_53015.1
HL_53015.1
  • Basepair signature: cWW-cSH-tSS-R-R
  • History status: Exact match
101
175
  • HL_97022.1
HL_97022.1
  • Basepair signature: cWW-tSH-R
  • History status: Exact match
71
176
  • HL_25947.1
HL_25947.1
  • Basepair signature: cWW-L-R-R-L-tHW-L-R-R-R-L-cWW-cWW-R-R-R-R
  • History status: Exact match
231
177
  • HL_24707.1
HL_24707.1
  • Basepair signature: cWW-cWS
  • History status: Exact match
91
178
  • HL_27397.1
HL_27397.1
  • Basepair signature: cWW-cWW-R-R
  • History status: Exact match
91
179
  • HL_93530.1
HL_93530.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
81
180
  • HL_30008.1
HL_30008.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
51
181
  • HL_36151.1
HL_36151.1
  • Basepair signature: cWW-cWW-tWW-R-R-R-R-R
  • History status: Exact match
  • Name: SSU Helix 43 (h43) Hairpin Loop from T.th. T-loop like.
121
182
  • HL_40070.1
HL_40070.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
91
183
  • HL_58223.1
HL_58223.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
91
184
  • HL_67000.1
HL_67000.1
  • Basepair signature: cWW-tSW-R
  • History status: Exact match
61
185
  • HL_63642.1
HL_63642.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
91
186
  • HL_50018.1
HL_50018.1
  • Basepair signature: cWW-tSH-R-R-R
  • History status: Exact match
71
187
  • HL_17537.1
HL_17537.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
101
188
  • HL_52116.1
HL_52116.1
  • Basepair signature: cWW-cWS-R-R-R
  • History status: Exact match
111
189
  • HL_25197.1
HL_25197.1
  • Basepair signature: cWW-tSH-tSH-bif-R-R-R-R-R-R-R
  • History status: Exact match
171
190
  • HL_60203.1
HL_60203.1
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
81
191
  • HL_15291.1
HL_15291.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
  • Name: GNRA with one bulged base
61
192
  • HL_78389.1
HL_78389.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
51
193
  • HL_42345.1
HL_42345.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
81
194
  • HL_99612.1
HL_99612.1
  • Basepair signature: cWW-tSH-R-R-R-R
  • History status: Exact match
91
195
  • HL_16822.1
HL_16822.1
  • Basepair signature: cWW-cWW-R-R-R-R-R-R-R
  • History status: Exact match
131
196
  • HL_65428.1
HL_65428.1
  • Basepair signature: cWW
  • History status: Exact match
41
197
  • HL_57923.1
HL_57923.1
  • Basepair signature: cWW-cWW-R-R
  • History status: Exact match
91
198
  • HL_26579.1
HL_26579.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
91
199
  • HL_93263.1
HL_93263.1
  • Basepair signature: cWW
  • History status: Exact match
91
200
  • HL_11337.1
HL_11337.1
  • Basepair signature: cWW-L-cWW-R-R-R
  • History status: Exact match
101
201
  • HL_94981.1
HL_94981.1
  • Basepair signature: cWW-R-R-tWH-R-R-R-R
  • History status: Exact match
101
202
  • HL_79902.1
HL_79902.1
  • Basepair signature: cWW-tSH-tHS-R-R
  • History status: Exact match
111
203
  • HL_47337.1
HL_47337.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
71
204
  • HL_85018.1
HL_85018.1
  • Basepair signature: cWW-R-R-R-R-R-R-R
  • History status: Exact match
101
205
  • HL_73972.1
HL_73972.1
  • Basepair signature: cWW-bif-tSW
  • History status: Exact match
91
206
  • HL_94639.1
HL_94639.1
  • Basepair signature: cWW-R-tSH-R-R-R
  • History status: Exact match
91
207
  • HL_87223.1
HL_87223.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
81
208
  • HL_30731.1
HL_30731.1
  • Basepair signature: cWW-R
  • History status: Exact match
71
209
  • HL_82288.1
HL_82288.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
111
210
  • HL_96994.1
HL_96994.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R
  • History status: Exact match
111
211
  • HL_59610.1
HL_59610.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
91
212
  • HL_76004.1
HL_76004.1
  • Basepair signature: cWW-R-R-R-R-R-R-R
  • History status: Exact match
121
213
  • HL_87172.1
HL_87172.1
  • Basepair signature: cWW-cWW-R-R-R
  • History status: Exact match
101
214
  • HL_45411.1
HL_45411.1
  • Basepair signature: cWW-tSW-R-R-R-R
  • History status: Exact match
91
215
  • HL_08388.1
HL_08388.1
  • Basepair signature: cWW-cWS-R
  • History status: New id, 1 parent
111
216
  • HL_74451.1
HL_74451.1
  • Basepair signature: cWW-L-R-R-R-R-L-L-L-cWW
  • History status: Exact match
161
217
  • HL_42255.1
HL_42255.1
  • Basepair signature: cWW-R-R-cSH
  • History status: Exact match
81
218
  • HL_05350.1
HL_05350.1
  • Basepair signature: cWW-R-R-cWH-R-R-tHW-R-R-R-R-R-R-R
  • History status: Exact match
191
219
  • HL_21695.1
HL_21695.1
  • Basepair signature: cWW
  • History status: Exact match
  • Name: UNCG-like. cWW Closing pair.
61
220
  • HL_20806.1
HL_20806.1
  • Basepair signature: cWW-R-R-R-R-cHH-R-R
  • History status: Exact match
141
221
  • HL_19132.1
HL_19132.1
  • Basepair signature: cWW-tSH-R-tSH-R
  • History status: Exact match
81
222
  • HL_19452.1
HL_19452.1
  • Basepair signature: cWW-R-R-cWS-cSH-R-R
  • History status: Exact match
  • Name: tRNA D-loop
141
223
  • HL_38897.1
HL_38897.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
  • Name: S8 operon binding Hairpin Loop. T-loop like with purine stacking.
81
224
  • HL_19673.1
HL_19673.1
  • Basepair signature: cWW-bif-L-R-R-L-bif-L-cWW-R-R-R
  • History status: Exact match
181
225
  • HL_58052.1
HL_58052.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
111
226
  • HL_93567.1
HL_93567.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
71
227
  • HL_00721.1
HL_00721.1
  • Basepair signature: cWW
  • History status: Exact match
61
228
  • HL_68579.1
HL_68579.1
  • Basepair signature: cWW-cWW-R
  • History status: Exact match
81
229
  • HL_24108.1
HL_24108.1
  • Basepair signature: cWW-cWW-R-R-R
  • History status: Exact match
111
230
  • HL_99932.1
HL_99932.1
  • Basepair signature: cWW-cWH-R-R-R
  • History status: Exact match
101
231
  • HL_57339.1
HL_57339.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
61
232
  • HL_39422.1
HL_39422.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
91
233
  • HL_84720.1
HL_84720.1
  • Basepair signature: cWW-L-R-R-R-L-cWW-L-R-L-cWW-R
  • History status: Exact match
161
234
  • HL_62374.1
HL_62374.1
  • Basepair signature: cWW-cSS-cSS-R-R-R-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
201
235
  • HL_46055.1
HL_46055.1
  • Basepair signature: cWW-R
  • History status: Exact match
71
236
  • HL_45740.1
HL_45740.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
81
237
  • HL_88960.1
HL_88960.1
  • Basepair signature: cWW-R-tSW-R-R
  • History status: Exact match
81
238
  • HL_25175.1
HL_25175.1
  • Basepair signature: cWW-L-R-R-cWW-R-cWW-cWW-R-R-R
  • History status: Exact match
161
239
  • HL_98233.1
HL_98233.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
91
240
  • HL_63001.1
HL_63001.1
  • Basepair signature: cWW-R
  • History status: Exact match
41
241
  • HL_91613.1
HL_91613.1
  • Basepair signature: cWW-cWW-cWW-R-R-R
  • History status: Exact match
111
242
  • HL_59182.1
HL_59182.1
  • Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
161
243
  • HL_98834.1
HL_98834.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
81
244
  • HL_67761.1
HL_67761.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
61
245
  • HL_39846.1
HL_39846.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
331
246
  • HL_28776.1
HL_28776.1
  • Basepair signature: cWW-R-R-R
  • History status: New id, no parents
71
247
  • HL_78422.1
HL_78422.1
  • Basepair signature: cWW-R-R-R-R-R-R-R
  • History status: Exact match
  • Name: SSU Central Pseudoknot (forms helix 2)
101
248
  • HL_78507.1
HL_78507.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
71
249
  • HL_66877.1
HL_66877.1
  • Basepair signature: cWW-cWW-R-cSW-R-cSH
  • History status: Exact match
  • Name: cSH GU/cWS double platform, intercalation site
111
250
  • HL_21839.1
HL_21839.1
  • Basepair signature: cWW-cSW-R-R-R-R-R-R-R
  • History status: New id, 1 parent
111
251
  • HL_33640.1
HL_33640.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
91
252
  • HL_35865.1
HL_35865.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
61
253
  • HL_40731.1
HL_40731.1
  • Basepair signature: cWW-R-R-tWH-R
  • History status: Exact match
101
254
  • HL_63323.1
HL_63323.1
  • Basepair signature: cWW-R-cWH-R-R-R-R
  • History status: Exact match
91
255
  • HL_63997.1
HL_63997.1
  • Basepair signature: cWW
  • History status: Exact match
61
256
  • HL_99207.1
HL_99207.1
  • Basepair signature: cWW-tSS-R-R
  • History status: Exact match
  • Name: Tetrahymena LSU hairpin poorly modeled
91
257
  • HL_04305.1
HL_04305.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
81
258
  • HL_81994.1
HL_81994.1
  • Basepair signature: cWW-L-R-tHW-tWW-L-L-cSH-cWS-L-cWW-R-R-R-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
311
259
  • HL_25195.1
HL_25195.1
  • Basepair signature: cWW-cWH-R-R-R-R-R-R-R
  • History status: Exact match
141
260
  • HL_05113.1
HL_05113.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
111
261
  • HL_13786.1
HL_13786.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
61
262
  • HL_89473.1
HL_89473.1
  • Basepair signature: cWW-R-R-R-R
  • History status: New id, no parents
91
263
  • HL_62500.1
HL_62500.1
  • Basepair signature: cWW-bif-R-cWW-R
  • History status: Exact match
81
264
  • HL_66880.1
HL_66880.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R
  • History status: Exact match
121
265
  • HL_78228.1
HL_78228.1
  • Basepair signature: cWW-R-R-R-R-cWS-R-R-R
  • History status: Exact match
121
266
  • HL_79038.1
HL_79038.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
  • Name: LSU Helix 12 (H12) Hairpin Loop. GNRA-like with altered stacking
61
267
  • HL_24422.1
HL_24422.1
  • Basepair signature: cWW-R-cWW-R-tSH-R-R-cHW-R-R
  • History status: Exact match
171
268
  • HL_53789.1
HL_53789.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
61
269
  • HL_44390.1
HL_44390.1
  • Basepair signature: cWW-R-tSW-R-tWH-R-R-R
  • History status: Exact match
121
270
  • HL_97784.1
HL_97784.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
181
271
  • HL_22533.1
HL_22533.1
  • Basepair signature: cWW-cWW-R-R-R
  • History status: Exact match
91
272
  • HL_55202.1
HL_55202.1
  • Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R
  • History status: Exact match
  • Name: U2B"-U2A" binding hairpin loop
151
273
  • HL_23628.1
HL_23628.1
  • Basepair signature: cWW-tWH-R-R
  • History status: Exact match
71
274
  • HL_14524.1
HL_14524.1
  • Basepair signature: cWW-cWW-R-R-R-R
  • History status: Exact match
91
275
  • HL_84888.1
HL_84888.1
  • Basepair signature: cWW-cWW-R-tSH-R-R
  • History status: Exact match
  • Name: T-loop like but without tWH UA
91
276
  • HL_03785.1
HL_03785.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
  • Name: LSU Helix 8 (H8) Hairpin Loop
61
277
  • HL_75984.1
HL_75984.1
  • Basepair signature: cWW-cWW-cWH-R-R-tWH-R-R-R
  • History status: Exact match
141
278
  • HL_14384.1
HL_14384.1
  • Basepair signature: cWW-R-R-R-R
  • History status: New id, no parents
81
279
  • HL_39035.1
HL_39035.1
  • Basepair signature: cWW-cWW-tSH-tHS-R-R-R-R-R-cWW-R-R-R-R-R
  • History status: Exact match
231
280
  • HL_55450.1
HL_55450.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
71
281
  • HL_20028.1
HL_20028.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
111
282
  • HL_39943.1
HL_39943.1
  • Basepair signature: cWW-R-tWW-cWH-R-tHS-R-R-R-R-R-R-R-R-R-R-tSH-R-R-R-R-R-R-R-cSH-cSS-R
  • History status: Exact match
381
283
  • HL_52540.1
HL_52540.1
  • Basepair signature: cWW
  • History status: Exact match
71
284
  • HL_56809.1
HL_56809.1
  • Basepair signature: cWW-R
  • History status: Exact match
111
285
  • HL_10116.1
HL_10116.1
  • Basepair signature: cWW-tSH-tHS-tSS-R-R-R-cWW-R-R-R-R-R
  • History status: Exact match
  • Name: Kink-turn-like Hairpin Loop
191
286
  • HL_96012.1
HL_96012.1
  • Basepair signature: cWW-R-R-R-R-R-R
  • History status: Exact match
101
287
  • HL_84768.1
HL_84768.1
  • Basepair signature: cWW-R
  • History status: Exact match
71
288
  • HL_94813.1
HL_94813.1
  • Basepair signature: cWW-cWW-R-tWH-R-R-R-R
  • History status: Exact match
111
289
  • HL_57644.1
HL_57644.1
  • Basepair signature: cWW-tWH-R-tSH-R
  • History status: Exact match
101
290
  • HL_62880.1
HL_62880.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
71
291
  • HL_22461.1
HL_22461.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
301
292
  • HL_19074.1
HL_19074.1
  • Basepair signature: cWW-R-cSH-R
  • History status: New id, no parents
61
293
  • HL_83263.1
HL_83263.1
  • Basepair signature: cWW-cSW-R-R-cWW
  • History status: Exact match
91
294
  • HL_37962.1
HL_37962.1
  • Basepair signature: cWW-tSH-R-R-R-R
  • History status: Exact match
91
295
  • HL_59225.1
HL_59225.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
61
296
  • HL_62564.1
HL_62564.1
  • Basepair signature: cWW-tSH-R
  • History status: Exact match
  • Name: LSU Helix 28 (H28) Hairpin Loop | LSU Helix 12 (H12) Hairpin Loop. GNRA-like with altered stacking
71
297
  • HL_04584.1
HL_04584.1
  • Basepair signature: cWW-tWH-R-R
  • History status: Exact match
81
298
  • HL_79541.1
HL_79541.1
  • Basepair signature: cWW-R-tWW-R-R-R
  • History status: New id, 1 parent
  • Name: 16S helix 23 and 24 hairpin loops
121
299
  • HL_95049.1
HL_95049.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
  • Name: Two base, cross-stacked hairpin loop
91
300
  • HL_12706.1
HL_12706.1
  • Basepair signature: cWW-tSW
  • History status: Exact match
71
301
  • HL_46570.1
HL_46570.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
101
302
  • HL_23080.1
HL_23080.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
81
303
  • HL_38898.1
HL_38898.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
101
304
  • HL_38138.1
HL_38138.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
101
305
  • HL_93428.1
HL_93428.1
  • Basepair signature: cWW-R-R-cWH-R
  • History status: Exact match
81
306
  • HL_99779.1
HL_99779.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
71
307
  • HL_57667.1
HL_57667.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
91
308
  • HL_92594.1
HL_92594.1
  • Basepair signature: cWW-R-R-R-R-R-R-cSH
  • History status: New id, no parents
121
309
  • HL_65802.1
HL_65802.1
  • Basepair signature: cWW-tSH-tHH-R-R-R-R-R
  • History status: Exact match
111
310
  • HL_04979.1
HL_04979.1
  • Basepair signature: cWW-cSW-R-R-R-R
  • History status: Exact match
  • Name: LSU Helix 99A (H99A) Hairpin Loop. Closed by cSW AA.
91
311
  • HL_50954.1
HL_50954.1
  • Basepair signature: cWW-tSH-R-R-R-R-R-R
  • History status: Exact match
121
312
  • HL_57217.1
HL_57217.1
  • Basepair signature: cWW-R-R-R-cSH
  • History status: Exact match
  • Name: cHS platform Intercalation Site
91
313
  • HL_99584.1
HL_99584.1
  • Basepair signature: cWW-R
  • History status: Exact match
51
314
  • HL_19363.1
HL_19363.1
  • Basepair signature: cWW-cWS-R
  • History status: Exact match
111
315
  • HL_45358.1
HL_45358.1
  • Basepair signature: cWW-R-R-R-R-tHW-R-R-R-R-R
  • History status: Exact match
  • Name: Double hairpin loop based on GGA triple
131
316
  • HL_70912.1
HL_70912.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
81
317
  • HL_83865.1
HL_83865.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
61
318
  • HL_14536.1
HL_14536.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
61
319
  • HL_17008.1
HL_17008.1
  • Basepair signature: cWW-R-R-R-tSW-R-R
  • History status: Exact match
  • Name: Nova-2 KH3 domain binding hairpin
141
320
  • HL_27236.1
HL_27236.1
  • Basepair signature: cWW-cWS-R-R
  • History status: Exact match
91
321
  • HL_65107.1
HL_65107.1
  • Basepair signature: cWW-R-tSH-tHS-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
191
322
  • HL_55272.1
HL_55272.1
  • Basepair signature: cWW-cWW-L-R-cSS-cWW
  • History status: Exact match
101
323
  • HL_49492.1
HL_49492.1
  • Basepair signature: cWW-tSH-tHW-cSH-R-R-R-R-R-R-R
  • History status: Exact match
  • Name: Forms 7-BP PseudoKnot. Has embedded sarcin-like motif
151



Exact match 264; Updated, 1 parent 39; New id, 1 parent 7; New id, 2 parents 3; New id, no parents 5; > 2 parents 2; Updated, 2 parents 3;