RNA 3D Hub //

5FLX Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5FLX_0011/1/7:17No text annotation
Not in a motif group		homologous
HL_4V88_186
HL_89881.2
HL_5FLX_0021/1/69:80No text annotation
Not in a motif group
HL_5FLX_0031/1/156:162Other HL
Not in a motif group		homologous
HL_4V88_188
HL_76539.2
HL_5FLX_0041/1/197:202GNRA
Not in a motif group		geometric
HL_5TBW_017
HL_42097.1
HL_5FLX_0071/1/322:329No text annotation
Not in a motif group
HL_5FLX_0081/1/377:387No text annotation
Not in a motif group
HL_5FLX_0091/1/416:421No text annotation
Not in a motif group		homologous
HL_4V88_194
HL_50142.2
HL_5FLX_0101/1/441:452No text annotation
Not in a motif group		homologous
HL_4V88_195
HL_84288.1
HL_5FLX_0111/1/462:467UNCG
Not in a motif group		homologous
HL_4V88_196
HL_03562.2
HL_5FLX_0121/1/498:504No text annotation
Not in a motif group		homologous
HL_4V88_197
HL_09136.1
HL_5FLX_0131/1/539:544No text annotation
Not in a motif group		geometric
HL_5NFV_001
HL_76539.2
HL_5FLX_0141/1/569:581No text annotation
Not in a motif group		geometric
HL_4V88_199
HL_06285.2
HL_5FLX_0151/1/618:623No text annotation
Not in a motif group		geometric
HL_4WF9_003
HL_75407.1
HL_5FLX_0181/1/820:828No text annotation
Not in a motif group		homologous
HL_4V88_203
HL_46766.2
HL_5FLX_0191/1/833:841No text annotation
Not in a motif group
HL_5FLX_0201/1/885:901No text annotation
Not in a motif group		homologous
HL_4V88_205
HL_96598.1
HL_5FLX_0211/1/957:966No text annotation
Not in a motif group		homologous
HL_4V88_206
HL_12326.1
HL_5FLX_0221/1/994:999Other HL
Not in a motif group		homologous
HL_4V88_207
HL_87030.2
HL_5FLX_0231/1/1054:1064No text annotation
Not in a motif group		homologous
HL_4V88_208
HL_12326.1
HL_5FLX_0241/1/1113:1120No text annotation
Not in a motif group
HL_5FLX_0251/1/1141:1146Other HL
Not in a motif group		homologous
HL_4V88_210
HL_42097.1
HL_5FLX_0261/1/1178:1183GNRA
Not in a motif group		homologous
HL_4V88_211
HL_42097.1
HL_5FLX_0271/1/1245:1254No text annotation
Not in a motif group		homologous
HL_4V88_212
HL_73530.2
HL_5FLX_0281/1/1295:1304No text annotation
Not in a motif group		homologous
HL_4V88_213
HL_53597.2
HL_5FLX_0291/1/1353:1358GNRA
Not in a motif group		homologous
HL_4V88_214
HL_42097.1
HL_5FLX_0301/1/1366:1373No text annotation
Not in a motif group		homologous
HL_4V88_215
HL_71554.2
HL_5FLX_0311/1/1415:1422No text annotation
Not in a motif group
HL_5FLX_0321/1/1460:1466No text annotation
Not in a motif group
HL_5FLX_0331/1/1565:1570GNRA
Not in a motif group		homologous
HL_4V88_218
HL_42097.1
HL_5FLX_0341/1/1614:1625No text annotation
Not in a motif group		homologous
HL_4V88_219
HL_22554.1
HL_5FLX_0351/1/1658:1666No text annotation
Not in a motif group		homologous
HL_4V88_220
HL_60812.1
HL_5FLX_0361/1/1847:1852Other HL
Not in a motif group		homologous
HL_4V88_222
HL_16173.1
HL_5FLX_0371/z/79:87No text annotation
Not in a motif group
HL_5FLX_0381/z/161:166No text annotation
Not in a motif group
HL_5FLX_0401/z/230:237No text annotation
Not in a motif group
HL_5FLX_0411/z/262:271No text annotation
Not in a motif group
HL_5FLX_0421/z/280:283No text annotation
Not in a motif group
HL_5FLX_0431/z/294:299No text annotation
Not in a motif group
HL_5FLX_0441/z/304:313No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
HL_5FLX_005No text annotation
HL_5FLX_006T-loop with 1 bulged base
HL_5FLX_016No text annotation
HL_5FLX_017No text annotation
HL_5FLX_039No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5FLX_0011/1/23:25,
1/1/649:651		No text annotation
Not in a motif group		geometric
IL_5J7L_259
IL_95997.1
IL_5FLX_0021/1/34:36,
1/1/519:521		UC cWW
Not in a motif group		homologous
IL_4V88_385
IL_51629.2
IL_5FLX_0031/1/37:40,
1/1/514:518		Double sheared
Not in a motif group		geometric
IL_4WF9_016
IL_09705.9
IL_5FLX_0041/1/41:47,
1/1/479:481		No text annotation
Not in a motif group		homologous
IL_4V88_387
IL_33912.1
IL_5FLX_0051/1/49:51,
1/1/476:477		Minor groove platform
Not in a motif group		homologous
IL_4V88_388
IL_93353.1
IL_5FLX_0061/1/57:62,
1/1/86:88		No text annotation
Not in a motif group		homologous
IL_4V88_389
IL_95004.1
IL_5FLX_0071/1/62:68,
1/1/81:86		No text annotation
Not in a motif group
IL_5FLX_0081/1/108:110,
1/1/351:353		UU cWW
Not in a motif group		geometric
IL_1ZZ5_002
IL_51629.2
IL_5FLX_0091/1/110:115,
1/1/348:351		No text annotation
Not in a motif group
IL_5FLX_0101/1/115:121,
1/1/343:348		No text annotation
Not in a motif group
IL_5FLX_0111/1/145:151,
1/1/167:174		tWH-tWH-tHW-tHW
Not in a motif group		homologous
IL_4V88_394
IL_80604.2
IL_5FLX_0121/1/152:155,
1/1/163:166		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_4WF9_109
IL_30621.2
IL_5FLX_0131/1/188:192,
1/1/207:211		Triple sheared
Not in a motif group		geometric
IL_5J7L_274
IL_56467.8
IL_5FLX_0151/1/215:216,
1/1/309:311		No text annotation
Not in a motif group
IL_5FLX_0161/1/216:220,
1/1/301:309		No text annotation
Not in a motif group
IL_5FLX_0171/1/312:314,
1/1/336:337		Single bulged A
Not in a motif group		homologous
IL_4V88_399
IL_37497.2
IL_5FLX_0191/1/317:319,
1/1/332:333		Single stack bend
Not in a motif group		geometric
IL_5J7L_044
IL_76488.2
IL_5FLX_0201/1/359:364,
1/1/396:403		Kink-turn with non-sequential stacking
Not in a motif group		homologous
IL_4V88_402
IL_45067.2
IL_5FLX_0211/1/366:371,
1/1/393:394		No text annotation
Not in a motif group		geometric
IL_4ERD_001
IL_59677.2
IL_5FLX_0221/1/411:413,
1/1/424:429		No text annotation
Not in a motif group		homologous
IL_4V88_404
IL_11347.1
IL_5FLX_0231/1/437:439,
1/1/454:456		Isolated cWH basepair
Not in a motif group		homologous
IL_4V88_405
IL_51629.2
IL_5FLX_0241/1/459:461,
1/1/468:470		Isolated near basepair
Not in a motif group		homologous
IL_4V88_406
IL_52767.2
IL_5FLX_0251/1/491:495,
1/1/508:509		C-loop
Not in a motif group		geometric
IL_5J7L_018
IL_75255.1
IL_5FLX_0261/1/495:497,
1/1/505:508		Isolated cWS basepair
Not in a motif group		geometric
IL_5J7L_286
IL_52767.2
IL_5FLX_0281/1/530:531,
1/1/553:555		Single bulged A
Not in a motif group		geometric
IL_7RQB_101
IL_37497.2
IL_5FLX_0291/1/535:537,
1/1/546:549		No text annotation
Not in a motif group
IL_5FLX_0301/1/566:569,
1/1/581:584		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_402D_001
IL_30621.2
IL_5FLX_0311/1/599:606,
1/1/636:637		SSU/LSU pseudoknot
Not in a motif group		geometric
IL_4V88_413
IL_15861.7
IL_5FLX_0321/1/606:608,
1/1/635:636		Single bulged U
Not in a motif group		geometric
IL_7RQB_080
IL_83039.13
IL_5FLX_0331/1/611:617,
1/1/624:632		No text annotation
Not in a motif group		homologous
IL_4V88_415
IL_55871.1
IL_5FLX_0341/1/663:665,
1/1/1162:1164		No text annotation
Not in a motif group		geometric
IL_1Y27_001
IL_51629.2
IL_5FLX_0351/1/665:671,
1/1/1161:1162		No text annotation
Not in a motif group		homologous
IL_4V88_416
IL_69996.1
IL_5FLX_0361/1/673:675,
1/1/1030:1032		No text annotation
Not in a motif group		homologous
IL_4V88_417
IL_95997.1
IL_5FLX_0371/1/676:680,
1/1/1025:1029		tSH-tHW-tHS
Not in a motif group		homologous
IL_4V88_418
IL_17136.1
IL_5FLX_0381/1/745:747,
1/1/794:796		UG cWW
Not in a motif group		geometric
IL_4LFB_061
IL_95997.1
IL_5FLX_0391/1/747:750,
1/1/793:794		No text annotation
Not in a motif group
IL_5FLX_0401/1/801:803,
1/1/860:864		Major groove minor groove platform with extra cWW
Not in a motif group		geometric
IL_4WF9_012
IL_92788.2
IL_5FLX_0411/1/805:807,
1/1/856:858		No text annotation
Not in a motif group		homologous
IL_4V88_424
IL_95997.1
IL_5FLX_0421/1/807:815,
1/1/849:856		No text annotation
Not in a motif group
IL_5FLX_0431/1/877:881,
1/1/905:910		No text annotation
Not in a motif group
IL_5FLX_0451/1/922:923,
1/1/1019:1022		Major groove platform; stack outside cWW
Not in a motif group		homologous
IL_4V88_428
IL_50694.2
IL_5FLX_0461/1/924:927,
1/1/1014:1018		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_4V88_429
IL_30621.2
IL_5FLX_0471/1/928:931,
1/1/1010:1013		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_4V88_430
IL_30621.2
IL_5FLX_0481/1/931:935,
1/1/1007:1010		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_4V88_431
IL_30621.2
IL_5FLX_0491/1/942:945,
1/1/981:984		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_4V88_432
IL_30621.2
IL_5FLX_0501/1/952:956,
1/1/967:974		Kink-turn
Not in a motif group		geometric
IL_7A0S_004
IL_45067.2
IL_5FLX_0511/1/1042:1047,
1/1/1071:1073		Other IL
Not in a motif group		homologous
IL_4V88_435
IL_22046.1
IL_5FLX_0521/1/1047:1051,
1/1/1067:1071		tSH-tHW-tHS
Not in a motif group		geometric
IL_4V88_436
IL_17136.1
IL_5FLX_0531/1/1091:1093,
1/1/1152:1158		No text annotation
Not in a motif group		homologous
IL_4V88_437
IL_19557.3
IL_5FLX_0541/1/1098:1101,
1/1/1131:1134		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_4V88_438
IL_30621.2
IL_5FLX_0551/1/1101:1103,
1/1/1129:1131		No text annotation
Not in a motif group		geometric
IL_4YHW_001
IL_95997.1
IL_5FLX_0561/1/1108:1110,
1/1/1123:1124		Single bulged U
Not in a motif group		homologous
IL_4V88_439
IL_83039.13
IL_5FLX_0571/1/1168:1175,
1/1/1186:1191		No text annotation
Not in a motif group
IL_5FLX_0581/1/1202:1204,
1/1/1694:1697		No text annotation
Not in a motif group		geometric
IL_4KYY_002
IL_51629.2
IL_5FLX_0591/1/1206:1208,
1/1/1691:1692		Single bulged G
Not in a motif group		homologous
IL_4V88_442
IL_00225.2
IL_5FLX_0601/1/1214:1217,
1/1/1681:1685		C-loop
Not in a motif group		homologous
IL_4V88_443
IL_63596.6
IL_5FLX_0611/1/1230:1232,
1/1/1526:1528		No text annotation
Not in a motif group		homologous
IL_4V88_444
IL_95997.1
IL_5FLX_0621/1/1235:1236,
1/1/1521:1523		Minor groove platform
Not in a motif group		homologous
IL_4V88_445
IL_42622.2
IL_5FLX_0631/1/1270:1272,
1/1/1510:1512		No text annotation
Not in a motif group		homologous
IL_4V88_446
IL_95997.1
IL_5FLX_0651/1/1281:1290,
1/1/1309:1316		No text annotation
Not in a motif group
IL_5FLX_0661/1/1291:1293,
1/1/1306:1308		No text annotation
Not in a motif group		homologous
IL_4V88_448
IL_10023.1
IL_5FLX_0671/1/1325:1327,
1/1/1502:1503		Single bulged U
Not in a motif group		homologous
IL_4V88_449
IL_83039.13
IL_5FLX_0681/1/1329:1333,
1/1/1498:1500		Isolated cWS basepair
Not in a motif group		homologous
IL_4V88_450
IL_76319.2
IL_5FLX_0691/1/1333:1335,
1/1/1492:1498		Minor groove platform with extra cWW
Not in a motif group		geometric
IL_4V88_451
IL_92788.2
IL_5FLX_0701/1/1337:1338,
1/1/1488:1490		Single bulged A
Not in a motif group		homologous
IL_4V88_452
IL_37497.2
IL_5FLX_0711/1/1340:1342,
1/1/1483:1486		No text annotation
Not in a motif group
IL_5FLX_0721/1/1347:1349,
1/1/1380:1382		Isolated cWH basepair
Not in a motif group		homologous
IL_4V88_453
IL_51629.2
IL_5FLX_0731/1/1363:1365,
1/1/1374:1375		Minor groove platform
Not in a motif group		homologous
IL_4V88_454
IL_93353.1
IL_5FLX_0741/1/1395:1399,
1/1/1447:1450		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_6CZR_168
IL_67743.1
IL_5FLX_0761/1/1402:1406,
1/1/1440:1444		No text annotation
Not in a motif group
IL_5FLX_0771/1/1407:1412,
1/1/1425:1439		No text annotation
Not in a motif group
IL_5FLX_0781/1/1412:1415,
1/1/1422:1425		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_402D_001
IL_30621.2
IL_5FLX_0791/1/1537:1539,
1/1/1594:1596		No text annotation
Not in a motif group		geometric
IL_4P43_001
IL_95997.1
IL_5FLX_0801/1/1550:1558,
1/1/1577:1582		No text annotation
Not in a motif group
IL_5FLX_0811/1/1560:1562,
1/1/1573:1575		UU cWW water inserted
Not in a motif group		geometric
IL_4E48_002
IL_95997.1
IL_5FLX_0821/1/1604:1610,
1/1/1629:1635		No text annotation
Not in a motif group		homologous
IL_8C3A_469
IL_10092.1
IL_5FLX_0831/1/1700:1702,
1/1/1833:1836		No text annotation
Not in a motif group		geometric
IL_4V88_463
IL_36143.3
IL_5FLX_0841/1/1702:1705,
1/1/1829:1833		No text annotation
Not in a motif group		homologous
IL_4V88_464
IL_99670.1
IL_5FLX_0851/1/1706:1708,
1/1/1826:1828		No text annotation
Not in a motif group		geometric
IL_3GM7_004
IL_95997.1
IL_5FLX_0861/1/1708:1711,
1/1/1822:1826		Non canonical cWW and near pair
Not in a motif group		homologous
IL_4V88_466
IL_42334.1
IL_5FLX_0871/1/1714:1716,
1/1/1817:1819		AA cWW
Not in a motif group		homologous
IL_4V88_467
IL_95997.1
IL_5FLX_0881/1/1717:1720,
1/1/1813:1816		Double sheared
Not in a motif group		homologous
IL_4V88_468
IL_09705.9
IL_5FLX_0891/1/1720:1722,
1/1/1812:1813		Single bulged U
Not in a motif group		geometric
IL_4V88_469
IL_83039.13
IL_5FLX_0901/1/1729:1731,
1/1/1803:1805		No text annotation
Not in a motif group		homologous
IL_4V88_470
IL_51629.2
IL_5FLX_0911/1/1733:1736,
1/1/1798:1801		Double sheared
Not in a motif group		homologous
IL_4V88_471
IL_09705.9
IL_5FLX_0921/1/1736:1738,
1/1/1796:1798		No text annotation
Not in a motif group		geometric
IL_1Z7F_002
IL_95997.1
IL_5FLX_0931/1/1739:1741,
1/1/1793:1795		No text annotation
Not in a motif group		geometric
IL_4E48_003
IL_95997.1
IL_5FLX_0941/1/1742:1746,
1/1/1788:1792		Triple sheared
Not in a motif group		homologous
IL_4V88_474
IL_56467.8
IL_5FLX_0951/1/1750:1752,
1/1/1780:1784		Other IL
Not in a motif group		geometric
IL_5TBW_064
IL_84698.1
IL_5FLX_0961/z/47:49,
1/z/114:115		No text annotation
Not in a motif group
IL_5FLX_0971/z/52:58,
1/z/110:111		No text annotation
Not in a motif group
IL_5FLX_0981/z/61:62,
1/z/105:107		No text annotation
Not in a motif group
IL_5FLX_0991/z/62:65,
1/z/102:105		No text annotation
Not in a motif group
IL_5FLX_1001/z/67:69,
1/z/98:100		No text annotation
Not in a motif group
IL_5FLX_1011/z/70:75,
1/z/91:97		No text annotation
Not in a motif group
IL_5FLX_1021/z/135:137,
1/z/287:289		No text annotation
Not in a motif group
IL_5FLX_1031/z/143:145,
1/z/248:250		No text annotation
Not in a motif group
IL_5FLX_1041/z/149:150,
1/z/242:244		No text annotation
Not in a motif group
IL_5FLX_1061/z/255:261,
1/z/272:277		No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
IL_5FLX_014Isolated near basepair
IL_5FLX_018Self complementary
IL_5FLX_027Isolated cWH basepair
IL_5FLX_044Isolated cWH basepair
IL_5FLX_064No text annotation
IL_5FLX_075No text annotation
IL_5FLX_105No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5FLX_0011/1/816:819,
1/1/829:831,
1/1/843:848		No text annotation
Not in a motif group		homologous
J3_4V88_032
NA
J3_5FLX_0021/1/938:941,
1/1/985:993,
1/1/1000:1004		No text annotation
Not in a motif group		homologous
J3_4V88_033
NA
J3_5FLX_0031/1/1094:1096,
1/1/1136:1140,
1/1/1147:1151		No text annotation
Not in a motif group
J3_5FLX_0041/1/1218:1221,
1/1/1645:1651,
1/1/1673:1680		No text annotation
Not in a motif group		homologous
J3_4V88_035
NA
J3_5FLX_0051/1/1225:1228,
1/1/1530:1532,
1/1/1638:1641		No text annotation
Not in a motif group		homologous
J3_4V88_036
NA
J3_5FLX_0061/1/1237:1244,
1/1/1255:1266,
1/1/1516:1520		No text annotation
Not in a motif group
J3_5FLX_0071/1/1272:1277,
1/1/1320:1324,
1/1/1504:1510		No text annotation
Not in a motif group		homologous
J3_8C3A_041
NA
J3_5FLX_0081/1/1342:1345,
1/1/1384:1389,
1/1/1481:1483		No text annotation
Not in a motif group
J3_5FLX_0091/1/1391:1395,
1/1/1450:1456,
1/1/1470:1479		No text annotation
Not in a motif group
J3_5FLX_0101/1/1532:1536,
1/1/1597:1604,
1/1/1635:1638		No text annotation
Not in a motif group

Problematic loops

No problematic loops


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