6FTG Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6FTG_001 | 1/u/37:44 | No text annotation Not in a motif group | geometric HL_5TBW_001 HL_23481.5 | |
| HL_6FTG_002 | 1/u/68:73 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_96776.3 | |
| HL_6FTG_003 | 1/u/89:95 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.5 | |
| HL_6FTG_004 | 1/u/131:137 | No text annotation Not in a motif group | ||
| HL_6FTG_005 | 1/u/204:211 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_68493.6 | |
| HL_6FTG_006 | 1/u/222:226 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98557.5 | |
| HL_6FTG_007 | 1/u/230:238 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.6 | |
| HL_6FTG_008 | 1/u/289:298 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_54035.7 | |
| HL_6FTG_009 | 1/u/314:323 | No text annotation Not in a motif group | geometric HL_4QLM_002 HL_17926.5 | |
| HL_6FTG_010 | 1/u/368:373 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_43074.18 | |
| HL_6FTG_011 | 1/u/393:398 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_43074.18 | |
| HL_6FTG_012 | 1/u/1178:1183 | GNRA Not in a motif group | geometric HL_4W90_003 HL_43074.18 | |
| HL_6FTG_013 | 1/u/1252:1258 | No text annotation Not in a motif group | geometric HL_4LFB_012 HL_68304.6 | |
| HL_6FTG_014 | 1/u/1317:1326 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_33239.17 | |
| HL_6FTG_015 | 1/u/1364:1373 | No text annotation Not in a motif group | ||
| HL_6FTG_016 | 1/u/1389:1394 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_43074.18 | |
| HL_6FTG_017 | 1/u/1406:1411 | No text annotation Not in a motif group | ||
| HL_6FTG_018 | 1/u/1436:1448 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_69459.1 | |
| HL_6FTG_019 | 1/u/1479:1486 | No text annotation Not in a motif group | ||
| HL_6FTG_020 | 1/u/1561:1566 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_43074.18 | |
| HL_6FTG_021 | 1/u/1593:1602 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.5 | |
| HL_6FTG_022 | 1/u/1627:1635 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_05832.1 | |
| HL_6FTG_023 | 1/u/1675:1680 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_15942.5 | |
| HL_6FTG_024 | 1/u/1763:1769 | GNRA Not in a motif group | homologous HL_5TBW_023 HL_43074.18 | |
| HL_6FTG_025 | 1/u/1814:1823 | No text annotation Not in a motif group | ||
| HL_6FTG_026 | 1/u/1864:1870 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_43074.18 | |
| HL_6FTG_027 | 1/u/1886:1893 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_72451.5 | |
| HL_6FTG_028 | 1/u/1978:1988 | No text annotation Not in a motif group | homologous HL_5TBW_027 HL_92304.3 | |
| HL_6FTG_029 | 1/u/2006:2013 | No text annotation Not in a motif group | geometric HL_5FMZ_001 HL_35894.3 | |
| HL_6FTG_030 | 1/u/2130:2244 | No text annotation Not in a motif group | ||
| HL_6FTG_031 | 1/u/2317:2322 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_43074.18 | |
| HL_6FTG_032 | 1/u/2376:2384 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_33239.17 | |
| HL_6FTG_033 | 1/u/2420:2426 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_86880.5 | |
| HL_6FTG_034 | 1/u/2458:2463 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_43074.18 | |
| HL_6FTG_035 | 1/u/2487:2491 | No text annotation Not in a motif group | ||
| HL_6FTG_036 | 1/u/2523:2532 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_78457.4 | |
| HL_6FTG_037 | 1/u/2561:2566 | GNRA Not in a motif group | geometric HL_4QK9_002 HL_43074.18 | |
| HL_6FTG_038 | 1/u/2578:2583 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_43074.18 | |
| HL_6FTG_039 | 1/u/2623:2632 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_58912.1 | |
| HL_6FTG_040 | 1/u/2664:2670 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_00923.1 | |
| HL_6FTG_041 | 1/u/2705:2710 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_6FTG_042 | 1/u/2738:2742 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_69353.7 | |
| HL_6FTG_043 | 1/u/2792:2799 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_66171.3 | |
| HL_6FTG_044 | 1/u/2810:2816 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_02361.6 | |
| HL_6FTG_045 | 1/u/2872:2877 | UNCG Not in a motif group | homologous HL_5TBW_043 HL_79299.11 | |
| HL_6FTG_046 | 1/u/3614:3618 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_99223.1 | |
| HL_6FTG_047 | 1/u/3639:3649 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.4 | |
| HL_6FTG_048 | 1/u/3668:3674 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_43074.18 | |
| HL_6FTG_049 | 1/u/3723:3729 | No text annotation Not in a motif group | ||
| HL_6FTG_050 | 1/u/3757:3767 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_98248.1 | |
| HL_6FTG_051 | 1/u/3796:3804 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_53760.4 | |
| HL_6FTG_052 | 1/u/3873:3882 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.5 | |
| HL_6FTG_053 | 1/u/3948:4065 | No text annotation Not in a motif group | ||
| HL_6FTG_054 | 1/u/4102:4107 | UNCG Not in a motif group | geometric HL_5J7L_171 HL_79299.11 | |
| HL_6FTG_055 | 1/u/4139:4145 | No text annotation Not in a motif group | ||
| HL_6FTG_056 | 1/u/4193:4201 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_46891.3 | |
| HL_6FTG_057 | 1/u/4210:4222 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.5 | |
| HL_6FTG_058 | 1/u/4250:4258 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.3 | |
| HL_6FTG_059 | 1/u/4270:4277 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_46142.8 | |
| HL_6FTG_060 | 1/u/4301:4309 | No text annotation Not in a motif group | homologous HL_5TBW_058 HL_14725.1 | |
| HL_6FTG_061 | 1/u/4321:4326 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_43074.18 | |
| HL_6FTG_062 | 1/u/4352:4362 | No text annotation Not in a motif group | geometric HL_4V83_139 HL_16135.1 | |
| HL_6FTG_063 | 1/u/4417:4425 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_36421.5 | |
| HL_6FTG_064 | 1/u/4473:4481 | No text annotation Not in a motif group | geometric HL_4WF9_053 HL_93727.5 | |
| HL_6FTG_065 | 1/u/4497:4503 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_26055.6 | |
| HL_6FTG_066 | 1/u/4540:4545 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_43074.18 | |
| HL_6FTG_067 | 1/u/4603:4608 | GNRA Not in a motif group | geometric HL_4V9F_066 HL_43074.18 | |
| HL_6FTG_068 | 1/u/4646:4651 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_67719.1 | |
| HL_6FTG_069 | 1/u/4688:4702 | No text annotation Not in a motif group | ||
| HL_6FTG_070 | 1/u/4907:4914 | No text annotation Not in a motif group | ||
| HL_6FTG_071 | 1/u/4975:4983 | No text annotation Not in a motif group | geometric HL_5J7L_201 HL_05018.6 | |
| HL_6FTG_072 | 1/u/5021:5028 | No text annotation Not in a motif group | geometric HL_6VMY_004 HL_16898.3 | |
| HL_6FTG_073 | 1/v/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_02733.5 | |
| HL_6FTG_074 | 1/v/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_43074.18 | |
| HL_6FTG_075 | 1/w/47:56 | No text annotation Not in a motif group | geometric HL_4V9F_001 HL_55136.1 | |
| HL_6FTG_076 | 1/w/68:90 | No text annotation Not in a motif group | ||
| HL_6FTG_077 | 1/w/107:112 | No text annotation Not in a motif group | ||
| HL_6FTG_078 | 1/w/121:129 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6FTG_001 | 1/u/6:7, 1/w/149:151 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.10 | |
| IL_6FTG_002 | 1/u/12:14, 1/w/143:144 | Single bulged U Not in a motif group | homologous IL_5TBW_003 IL_83039.11 | |
| IL_6FTG_003 | 1/u/16:18, 1/w/139:141 | No text annotation Not in a motif group | geometric IL_6IA2_005 IL_01312.13 | |
| IL_6FTG_004 | 1/u/26:27, 1/u/55:57 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_04038.4 | |
| IL_6FTG_005 | 1/u/30:37, 1/u/44:52 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_61812.1 | |
| IL_6FTG_006 | 1/u/81:88, 1/u/96:102 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_29509.1 | |
| IL_6FTG_007 | 1/u/118:121, 1/u/152:153 | Multiple bulged bases Not in a motif group | geometric IL_5XWP_001 IL_13730.12 | |
| IL_6FTG_008 | 1/u/121:122, 1/u/147:152 | No text annotation Not in a motif group | homologous IL_5TBW_007 IL_19724.1 | |
| IL_6FTG_009 | 1/u/125:126, 1/u/142:144 | No text annotation Not in a motif group | ||
| IL_6FTG_010 | 1/u/168:173, 1/u/263:267 | No text annotation Not in a motif group | ||
| IL_6FTG_011 | 1/u/180:182, 1/u/255:256 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_04038.4 | |
| IL_6FTG_012 | 1/u/184:189, 1/u/252:253 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1NBS_009 IL_13730.12 | |
| IL_6FTG_013 | 1/u/195:196, 1/u/244:246 | Single bulged C Not in a motif group | geometric IL_4WF9_035 IL_61258.10 | |
| IL_6FTG_014 | 1/u/199:201, 1/u/214:215 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.11 | |
| IL_6FTG_015 | 1/u/285:286, 1/u/300:302 | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_31836.1 | |
| IL_6FTG_016 | 1/u/286:288, 1/u/299:300 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_04038.4 | |
| IL_6FTG_017 | 1/u/339:342, 1/w/32:33 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_005 IL_09061.4 | |
| IL_6FTG_018 | 1/u/348:350, 1/w/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_80007.16 | |
| IL_6FTG_019 | 1/u/387:390, 1/u/401:414 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.5 | |
| IL_6FTG_020 | 1/u/415:421, 1/w/13:19 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5TBW_015 IL_66414.5 | |
| IL_6FTG_021 | 1/u/443:446, 1/u/1300:1304 | No text annotation Not in a motif group | ||
| IL_6FTG_022 | 1/u/459:460, 1/u/695:697 | No text annotation Not in a motif group | ||
| IL_6FTG_023 | 1/u/462:464, 1/u/691:693 | No text annotation Not in a motif group | geometric IL_4AOB_005 IL_01312.13 | |
| IL_6FTG_024 | 1/u/482:486, 1/u/670:672 | No text annotation Not in a motif group | ||
| IL_6FTG_025 | 1/u/488:490, 1/u/664:668 | No text annotation Not in a motif group | ||
| IL_6FTG_026 | 1/u/490:493, 1/u/661:664 | No text annotation Not in a motif group | ||
| IL_6FTG_027 | 1/u/495:496, 1/u/657:659 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_04038.4 | |
| IL_6FTG_028 | 1/u/497:499, 1/u/655:656 | No text annotation Not in a motif group | ||
| IL_6FTG_029 | 1/u/500:506, 1/u/652:654 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_87332.1 | |
| IL_6FTG_030 | 1/u/508:510, 1/u/649:650 | Single bulged A Not in a motif group | geometric IL_1U63_004 IL_80007.16 | |
| IL_6FTG_031 | 1/u/511:515, 1/u/646:648 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_01312.13 | |
| IL_6FTG_032 | 1/u/708:709, 1/u/1287:1289 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_59137.10 | |
| IL_6FTG_033 | 1/u/722:724, 1/u/942:946 | No text annotation Not in a motif group | ||
| IL_6FTG_034 | 1/u/726:731, 1/u/938:940 | No text annotation Not in a motif group | ||
| IL_6FTG_035 | 1/u/731:735, 1/u/928:938 | No text annotation Not in a motif group | ||
| IL_6FTG_036 | 1/u/735:737, 1/u/927:928 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_04038.4 | |
| IL_6FTG_037 | 1/u/740:742, 1/u/922:924 | No text annotation Not in a motif group | geometric IL_4P43_004 IL_01312.13 | |
| IL_6FTG_038 | 1/u/745:754, 1/u/909:919 | No text annotation Not in a motif group | ||
| IL_6FTG_039 | 1/u/989:992, 1/u/1051:1064 | No text annotation Not in a motif group | ||
| IL_6FTG_040 | 1/u/1074:1077, 1/u/1233:1236 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_432 IL_85877.10 | |
| IL_6FTG_041 | 1/u/1077:1079, 1/u/1221:1233 | No text annotation Not in a motif group | ||
| IL_6FTG_042 | 1/u/1081:1082, 1/u/1217:1219 | Minor groove platform Not in a motif group | geometric IL_6DLR_003 IL_06437.11 | |
| IL_6FTG_043 | 1/u/1082:1085, 1/u/1212:1217 | No text annotation Not in a motif group | ||
| IL_6FTG_044 | 1/u/1086:1087, 1/u/1209:1211 | Single bulged C Not in a motif group | geometric IL_3W3S_001 IL_61258.10 | |
| IL_6FTG_045 | 1/u/1097:1098, 1/u/1197:1199 | Single stack bend Not in a motif group | geometric IL_5J7L_249 IL_04038.4 | |
| IL_6FTG_046 | 1/u/1173:1175, 1/u/1186:1188 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_01312.13 | |
| IL_6FTG_047 | 1/u/1357:1360, 1/u/1378:1382 | No text annotation Not in a motif group | ||
| IL_6FTG_048 | 1/u/1360:1361, 1/u/1376:1378 | No text annotation Not in a motif group | ||
| IL_6FTG_049 | 1/u/1425:1429, 1/u/1455:1460 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.1 | |
| IL_6FTG_050 | 1/u/1431:1434, 1/u/1450:1453 | Double sheared Not in a motif group | geometric IL_4WF9_087 IL_09705.7 | |
| IL_6FTG_051 | 1/u/1467:1468, 1/u/1496:1498 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_80007.16 | |
| IL_6FTG_052 | 1/u/1474:1476, 1/u/1489:1490 | Single base bend Not in a motif group | geometric IL_5IBB_340 IL_83121.7 | |
| IL_6FTG_053 | 1/u/1520:1522, 1/u/1655:1657 | No text annotation Not in a motif group | homologous IL_5TBW_027 IL_01312.13 | |
| IL_6FTG_054 | 1/u/1522:1526, 1/u/1648:1655 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.5 | |
| IL_6FTG_055 | 1/u/1550:1551, 1/u/1576:1578 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_59137.10 | |
| IL_6FTG_056 | 1/u/1551:1555, 1/u/1572:1576 | Triple sheared Not in a motif group | homologous IL_5TBW_030 IL_56467.6 | |
| IL_6FTG_057 | 1/u/1586:1589, 1/u/1605:1607 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_95485.6 | |
| IL_6FTG_058 | 1/u/1590:1592, 1/u/1603:1604 | Single bulged U Not in a motif group | homologous IL_5TBW_032 IL_83039.11 | |
| IL_6FTG_059 | 1/u/1624:1626, 1/u/1636:1640 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.5 | |
| IL_6FTG_060 | 1/u/1671:1674, 1/u/1681:1684 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_85877.10 | |
| IL_6FTG_061 | 1/u/1686:1688, 1/u/1848:1851 | No text annotation Not in a motif group | ||
| IL_6FTG_062 | 1/u/1694:1725, 1/u/1837:1842 | No text annotation Not in a motif group | ||
| IL_6FTG_063 | 1/u/1732:1737, 1/u/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_89193.1 | |
| IL_6FTG_064 | 1/u/1737:1738, 1/u/1790:1792 | Minor groove platform Not in a motif group | geometric IL_6DLR_003 IL_06437.11 | |
| IL_6FTG_065 | 1/u/1739:1744, 1/u/1786:1789 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_63596.4 | |
| IL_6FTG_066 | 1/u/1746:1749, 1/u/1781:1784 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_041 IL_85877.10 | |
| IL_6FTG_067 | 1/u/1749:1751, 1/u/1779:1781 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_01312.13 | |
| IL_6FTG_068 | 1/u/1753:1756, 1/u/1775:1777 | Intercalated cWW Not in a motif group | geometric IL_7A0S_044 IL_04038.4 | |
| IL_6FTG_069 | 1/u/1756:1758, 1/u/1774:1775 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_04038.4 | |
| IL_6FTG_070 | 1/u/1761:1763, 1/u/1769:1771 | No text annotation Not in a motif group | geometric IL_4WF9_083 IL_01312.13 | |
| IL_6FTG_071 | 1/u/1858:1860, 1/u/1874:1876 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_01312.13 | |
| IL_6FTG_072 | 1/u/1861:1863, 1/u/1871:1873 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_047 IL_67621.5 | |
| IL_6FTG_073 | 1/u/1905:1909, 1/u/2067:2071 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_53523.5 | |
| IL_6FTG_074 | 1/u/1911:1918, 1/u/2064:2065 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.6 | |
| IL_6FTG_075 | 1/u/1918:1920, 1/u/2063:2064 | No text annotation Not in a motif group | ||
| IL_6FTG_076 | 1/u/1920:1922, 1/u/2062:2063 | No text annotation Not in a motif group | ||
| IL_6FTG_077 | 1/u/1926:1933, 1/u/2053:2058 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_17971.1 | |
| IL_6FTG_078 | 1/u/1933:1944, 1/u/2038:2053 | No text annotation Not in a motif group | homologous IL_5TBW_052 IL_94878.1 | |
| IL_6FTG_079 | 1/u/1946:1948, 1/u/2035:2036 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.11 | |
| IL_6FTG_080 | 1/u/1957:1965, 1/u/2022:2026 | No text annotation Not in a motif group | homologous IL_5TBW_290 NA | |
| IL_6FTG_081 | 1/u/1973:1977, 1/u/1989:1993 | No text annotation Not in a motif group | geometric IL_4V9F_043 IL_30542.1 | |
| IL_6FTG_082 | 1/u/2001:2005, 1/u/2014:2016 | Major groove platform with extra cWW Not in a motif group | geometric IL_5D8H_003 IL_95485.6 | |
| IL_6FTG_083 | 1/u/2083:2085, 1/u/2272:2273 | Single bulged C Not in a motif group | geometric IL_3DIL_001 IL_61258.10 | |
| IL_6FTG_084 | 1/u/2290:2292, 1/u/2342:2345 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_01312.13 | |
| IL_6FTG_085 | 1/u/2299:2301, 1/u/2334:2335 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_80007.16 | |
| IL_6FTG_086 | 1/u/2302:2309, 1/u/2329:2333 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_29549.9 | |
| IL_6FTG_087 | 1/u/2312:2314, 1/u/2325:2326 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_80007.16 | |
| IL_6FTG_088 | 1/u/2358:2364, 1/u/3858:3863 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_35110.5 | |
| IL_6FTG_089 | 1/u/2415:2419, 1/u/2427:2429 | C-loop Not in a motif group | geometric IL_7A0S_047 IL_63596.4 | |
| IL_6FTG_090 | 1/u/2446:2450, 1/u/2509:2514 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_53523.5 | |
| IL_6FTG_091 | 1/u/2477:2479, 1/u/2499:2500 | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_31836.1 | |
| IL_6FTG_092 | 1/u/2542:2547, 1/u/2772:2774 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_01312.13 | |
| IL_6FTG_093 | 1/u/2589:2593, 1/u/2752:2756 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.6 | |
| IL_6FTG_094 | 1/u/2613:2614, 1/u/2724:2726 | Single bulged A Not in a motif group | geometric IL_3MJA_001 IL_80007.16 | |
| IL_6FTG_095 | 1/u/2614:2615, 1/u/2722:2724 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_72766.2 | |
| IL_6FTG_096 | 1/u/2622:2623, 1/u/2632:2634 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_04038.4 | |
| IL_6FTG_097 | 1/u/2646:2648, 1/u/2685:2688 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.6 | |
| IL_6FTG_098 | 1/u/2651:2653, 1/u/2681:2682 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_59137.10 | |
| IL_6FTG_099 | 1/u/2656:2662, 1/u/2672:2678 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_76900.1 | |
| IL_6FTG_100 | 1/u/2704:2705, 1/u/2710:2712 | No text annotation Not in a motif group | ||
| IL_6FTG_101 | 1/u/2832:2838, 1/u/3850:3853 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_79393.8 | |
| IL_6FTG_102 | 1/u/2844:2846, 1/u/3842:3844 | Isolated tWW turn Not in a motif group | homologous IL_5TBW_075 IL_54997.5 | |
| IL_6FTG_103 | 1/u/2847:2850, 1/u/3840:3841 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_80663.10 | |
| IL_6FTG_104 | 1/u/2850:2855, 1/u/3837:3840 | Intercalated tWH Not in a motif group | homologous IL_5TBW_077 IL_98882.3 | |
| IL_6FTG_105 | 1/u/2867:2872, 1/u/2877:2883 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_66584.5 | |
| IL_6FTG_106 | 1/u/2889:2891, 1/u/3610:3612 | No text annotation Not in a motif group | homologous IL_5TBW_079 IL_01312.13 | |
| IL_6FTG_107 | 1/u/2896:2897, 1/u/3602:3605 | No text annotation Not in a motif group | homologous IL_5TBW_080 IL_76195.1 | |
| IL_6FTG_108 | 1/u/2901:2905, 1/u/3589:3598 | No text annotation Not in a motif group | ||
| IL_6FTG_109 | 1/u/3632:3633, 1/u/3827:3829 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_80007.16 | |
| IL_6FTG_110 | 1/u/3660:3665, 1/u/3677:3684 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_95993.1 | |
| IL_6FTG_111 | 1/u/3700:3703, 1/u/3749:3750 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_72766.2 | |
| IL_6FTG_112 | 1/u/3704:3705, 1/u/3745:3748 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_085 IL_13730.12 | |
| IL_6FTG_113 | 1/u/3708:3710, 1/u/3741:3742 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_04038.4 | |
| IL_6FTG_114 | 1/u/3710:3714, 1/u/3739:3741 | No text annotation Not in a motif group | ||
| IL_6FTG_115 | 1/u/3715:3721, 1/u/3732:3738 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.5 | |
| IL_6FTG_116 | 1/u/3722:3723, 1/u/3729:3731 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_04038.4 | |
| IL_6FTG_117 | 1/u/3780:3781, 1/u/3811:3814 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_089 IL_69632.1 | |
| IL_6FTG_118 | 1/u/3781:3792, 1/u/3808:3811 | No text annotation Not in a motif group | geometric IL_5TBW_090 IL_45481.1 | |
| IL_6FTG_119 | 1/u/3895:3898, 1/u/4563:4565 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_87630.5 | |
| IL_6FTG_120 | 1/u/3900:3902, 1/u/4558:4561 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_86964.1 | |
| IL_6FTG_121 | 1/u/3913:3915, 1/u/4388:4389 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.11 | |
| IL_6FTG_122 | 1/u/3916:3917, 1/u/4384:4387 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_06437.11 | |
| IL_6FTG_123 | 1/u/3927:3929, 1/u/4181:4184 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.6 | |
| IL_6FTG_124 | 1/u/4082:4088, 1/u/4161:4164 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_98353.1 | |
| IL_6FTG_125 | 1/u/4095:4097, 1/u/4112:4113 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_06437.11 | |
| IL_6FTG_126 | 1/u/4191:4192, 1/u/4202:4204 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_80007.16 | |
| IL_6FTG_127 | 1/u/4243:4245, 1/u/4263:4267 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.6 | |
| IL_6FTG_128 | 1/u/4291:4293, 1/u/4317:4318 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_80007.16 | |
| IL_6FTG_129 | 1/u/4295:4298, 1/u/4312:4315 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_85877.10 | |
| IL_6FTG_130 | 1/u/4347:4350, 1/u/4364:4365 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_04038.4 | |
| IL_6FTG_131 | 1/u/4400:4401, 1/u/4442:4444 | Major groove platform Not in a motif group | homologous IL_5TBW_102 IL_80663.10 | |
| IL_6FTG_132 | 1/u/4401:4403, 1/u/4440:4442 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_05265.1 | |
| IL_6FTG_133 | 1/u/4403:4405, 1/u/4439:4440 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_80663.10 | |
| IL_6FTG_134 | 1/u/4405:4407, 1/u/4435:4439 | No text annotation Not in a motif group | homologous IL_5TBW_105 IL_07931.5 | |
| IL_6FTG_135 | 1/u/4412:4416, 1/u/4426:4430 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.6 | |
| IL_6FTG_136 | 1/u/4453:4454, 1/u/4526:4528 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_80663.10 | |
| IL_6FTG_137 | 1/u/4456:4458, 1/u/4520:4524 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_108 IL_01312.13 | |
| IL_6FTG_138 | 1/u/4458:4459, 1/u/4517:4520 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_13730.12 | |
| IL_6FTG_139 | 1/u/4466:4468, 1/u/4489:4491 | No text annotation Not in a motif group | homologous IL_5TBW_110 IL_01312.13 | |
| IL_6FTG_140 | 1/u/4468:4470, 1/u/4485:4489 | No text annotation Not in a motif group | ||
| IL_6FTG_141 | 1/u/4472:4473, 1/u/4481:4483 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_04038.4 | |
| IL_6FTG_142 | 1/u/4495:4497, 1/u/4503:4505 | No text annotation Not in a motif group | homologous IL_5TBW_112 IL_01312.13 | |
| IL_6FTG_143 | 1/u/4537:4538, 1/u/4547:4549 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_80007.16 | |
| IL_6FTG_144 | 1/u/4579:4582, 1/u/4721:4724 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_008 IL_85877.10 | |
| IL_6FTG_145 | 1/u/4582:4585, 1/u/4717:4721 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.7 | |
| IL_6FTG_146 | 1/u/4590:4592, 1/u/4618:4620 | No text annotation Not in a motif group | homologous IL_5TBW_115 IL_01312.13 | |
| IL_6FTG_147 | 1/u/4596:4603, 1/u/4608:4614 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_116 IL_04346.5 | |
| IL_6FTG_148 | 1/u/4624:4629, 1/u/4669:4673 | No text annotation Not in a motif group | ||
| IL_6FTG_149 | 1/u/4632:4637, 1/u/4662:4666 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_53523.5 | |
| IL_6FTG_150 | 1/u/4638:4640, 1/u/4659:4661 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_012 IL_42589.6 | |
| IL_6FTG_151 | 1/u/4641:4642, 1/u/4655:4658 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_13730.12 | |
| IL_6FTG_152 | 1/u/4681:4685, 1/u/4705:4709 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_53523.5 | |
| IL_6FTG_153 | 1/u/4739:4743, 1/u/4957:4960 | No text annotation Not in a motif group | ||
| IL_6FTG_154 | 1/u/4743:4746, 1/u/4954:4957 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_85877.10 | |
| IL_6FTG_155 | 1/u/4755:4766, 1/u/4868:4878 | No text annotation Not in a motif group | ||
| IL_6FTG_156 | 1/u/4768:4772, 1/u/4863:4866 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_7A0S_040 IL_85877.10 | |
| IL_6FTG_157 | 1/u/4885:4888, 1/u/4931:4934 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_85877.10 | |
| IL_6FTG_158 | 1/u/4891:4896, 1/u/4924:4928 | No text annotation Not in a motif group | ||
| IL_6FTG_159 | 1/u/4899:4901, 1/u/4920:4921 | No text annotation Not in a motif group | ||
| IL_6FTG_160 | 1/u/4966:4968, 1/u/5065:5066 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_04038.4 | |
| IL_6FTG_161 | 1/u/4972:4975, 1/u/4983:4986 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_129 IL_85877.10 | |
| IL_6FTG_162 | 1/u/4992:4994, 1/u/5057:5059 | No text annotation Not in a motif group | geometric IL_3D0U_006 IL_01312.13 | |
| IL_6FTG_163 | 1/u/4996:4997, 1/u/5053:5055 | Single bulged C Not in a motif group | geometric IL_1KUQ_002 IL_61258.10 | |
| IL_6FTG_164 | 1/u/5000:5002, 1/u/5045:5050 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_55456.1 | |
| IL_6FTG_165 | 1/u/5003:5009, 1/u/5039:5044 | No text annotation Not in a motif group | ||
| IL_6FTG_166 | 1/u/5012:5014, 1/u/5035:5036 | Single bulged C Not in a motif group | geometric IL_4WF9_035 IL_61258.10 | |
| IL_6FTG_167 | 1/u/5014:5017, 1/u/5032:5035 | tWS-tSW Not in a motif group | homologous IL_5TBW_135 IL_09705.7 | |
| IL_6FTG_168 | 1/v/15:16, 1/v/62:64 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_80007.16 | |
| IL_6FTG_169 | 1/v/21:27, 1/v/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_05523.1 | |
| IL_6FTG_170 | 1/v/28:29, 1/v/48:51 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.4 | |
| IL_6FTG_171 | 1/v/32:36, 1/v/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.5 | |
| IL_6FTG_172 | 1/v/71:78, 1/v/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.5 | |
| IL_6FTG_173 | 1/v/79:81, 1/v/95:97 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_01312.13 | |
| IL_6FTG_174 | 1/v/82:85, 1/v/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_01312.13 | |
| IL_6FTG_175 | 1/w/64:66, 1/w/92:95 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_55456.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6FTG_001 | 1/u/112:116, 1/u/155:160, 1/u/275:278 | No text annotation Not in a motif group | ||
| J3_6FTG_002 | 1/u/380:387, 1/u/414:415, 1/w/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_6FTG_003 | 1/u/448:455, 1/u/701:704, 1/u/1293:1298 | No text annotation Not in a motif group | ||
| J3_6FTG_004 | 1/u/711:713, 1/u/955:976, 1/u/1278:1285 | No text annotation Not in a motif group | ||
| J3_6FTG_005 | 1/u/1531:1537, 1/u/1622:1624, 1/u/1640:1643 | No text annotation Not in a motif group | homologous J3_5TBW_004 NA | |
| J3_6FTG_006 | 1/u/1545:1548, 1/u/1580:1584, 1/u/1609:1614 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_6FTG_007 | 1/u/2393:2399, 1/u/2805:2807, 1/u/2819:2822 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_6FTG_008 | 1/u/2402:2405, 1/u/2785:2791, 1/u/2800:2802 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_6FTG_009 | 1/u/2440:2445, 1/u/2515:2519, 1/u/2536:2537 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_6FTG_010 | 1/u/2575:2576, 1/u/2585:2589, 1/u/2756:2757 | No text annotation Not in a motif group | ||
| J3_6FTG_011 | 1/u/3937:3939, 1/u/4074:4078, 1/u/4168:4173 | No text annotation Not in a motif group | ||
| J3_6FTG_012 | 1/u/4091:4094, 1/u/4114:4129, 1/u/4155:4158 | No text annotation Not in a motif group | ||
| J3_6FTG_013 | 1/u/4241:4243, 1/u/4267:4269, 1/u/4278:4283 | No text annotation Not in a motif group | ||
| J3_6FTG_014 | 1/u/4463:4466, 1/u/4491:4493, 1/u/4507:4513 | No text annotation Not in a motif group | ||
| J3_6FTG_015 | 1/u/4970:4972, 1/u/4986:4991, 1/u/5060:5063 | No text annotation Not in a motif group | ||
| J3_6FTG_016 | 1/v/9:14, 1/v/65:66, 1/v/109:110 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_6FTG_017 | 1/w/44:45, 1/w/58:64, 1/w/95:99 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: