7PJV Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7PJV_001 | 1/A/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_7PJV_002 | 1/A/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_7PJV_003 | 1/A/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_7PJV_004 | 1/A/137:142 | Other HL Not in a motif group | geometric HL_2NUE_001 HL_07518.1 | |
| HL_7PJV_005 | 1/A/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_7PJV_006 | 1/A/194:201 | No text annotation Not in a motif group | homologous HL_7A0S_006 HL_06192.2 | |
| HL_7PJV_007 | 1/A/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_7PJV_008 | 1/A/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_7PJV_009 | 1/A/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_7PJV_010 | 1/A/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_7PJV_011 | 1/A/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_7PJV_012 | 1/A/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_7PJV_013 | 1/A/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_7PJV_014 | 1/A/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_7PJV_015 | 1/A/544:549 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_7PJV_016 | 1/A/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_89380.2 | |
| HL_7PJV_017 | 1/A/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_7PJV_018 | 1/A/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_7PJV_019 | 1/A/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_77805.2 | |
| HL_7PJV_020 | 1/A/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_7PJV_021 | 1/A/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
| HL_7PJV_022 | 1/A/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_7PJV_023 | 1/A/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_64365.1 | |
| HL_7PJV_024 | 1/A/883:893 | No text annotation Not in a motif group | ||
| HL_7PJV_025 | 1/A/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
| HL_7PJV_026 | 1/A/978:985 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_7PJV_027 | 1/A/1062:1076 | No text annotation Not in a motif group | ||
| HL_7PJV_028 | 1/A/1092:1099 | No text annotation Not in a motif group | ||
| HL_7PJV_029 | 1/A/1169:1180 | No text annotation Not in a motif group | ||
| HL_7PJV_030 | 1/A/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_7PJV_031 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_7PJV_032 | 1/A/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_7PJV_033 | 1/A/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_7PJV_034 | 1/A/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_7PJV_035 | 1/A/1451:1459 | No text annotation Not in a motif group | geometric HL_5J7L_169 HL_53837.1 | |
| HL_7PJV_036 | 1/A/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_7PJV_037 | 1/A/1533:1538 | No text annotation Not in a motif group | ||
| HL_7PJV_038 | 1/A/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_7PJV_039 | 1/A/1612:1619 | No text annotation Not in a motif group | ||
| HL_7PJV_040 | 1/A/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_7PJV_041 | 1/A/1691:1696 | UNCG Not in a motif group | geometric HL_4JF2_003 HL_03562.2 | |
| HL_7PJV_042 | 1/A/1728:1731 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_53837.1 | |
| HL_7PJV_043 | 1/A/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_7PJV_044 | 1/A/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.5 | |
| HL_7PJV_045 | 1/A/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_7PJV_046 | 1/A/1868:1873 | GNRA Not in a motif group | geometric HL_6JDV_001 HL_42097.1 | |
| HL_7PJV_048 | 1/A/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_7PJV_049 | 1/A/2027:2036 | No text annotation Not in a motif group | ||
| HL_7PJV_050 | 1/A/2129:2159 | No text annotation Not in a motif group | ||
| HL_7PJV_051 | 1/A/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_7PJV_052 | 1/A/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_7PJV_053 | 1/A/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_7PJV_054 | 1/A/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_7PJV_055 | 1/A/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_7PJV_056 | 1/A/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_7PJV_057 | 1/A/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_7PJV_058 | 1/A/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_7PJV_059 | 1/A/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_7PJV_060 | 1/A/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_7PJV_061 | 1/A/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_7PJV_062 | 1/A/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_7PJV_063 | 1/A/2658:2663 | No text annotation Not in a motif group | geometric HL_7A0S_016 HL_42097.1 | |
| HL_7PJV_064 | 1/A/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_7PJV_065 | 1/A/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_7PJV_066 | 1/A/2796:2799 | No text annotation Not in a motif group | geometric HL_6JOO_002 HL_38927.2 | |
| HL_7PJV_067 | 1/A/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_7PJV_068 | 1/A/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_7PJV_069 | 1/B/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_7PJV_070 | 1/B/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_7PJV_071 | 1/a/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_7PJV_072 | 1/a/78:91 | No text annotation Not in a motif group | ||
| HL_7PJV_073 | 1/a/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_7PJV_074 | 1/a/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_7PJV_075 | 1/a/207:212 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_7PJV_076 | 1/a/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_7PJV_077 | 1/a/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_7PJV_078 | 1/a/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_7PJV_079 | 1/a/342:347 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_03562.2 | |
| HL_7PJV_080 | 1/a/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_7PJV_081 | 1/a/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_7PJV_082 | 1/a/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
| HL_7PJV_083 | 1/a/521:528 | No text annotation Not in a motif group | homologous HL_5J7L_013 NA | |
| HL_7PJV_084 | 1/a/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7PJV_047 | No text annotation | ||
| HL_7PJV_085 | No text annotation | ||
| HL_7PJV_086 | Other HL | ||
| HL_7PJV_087 | No text annotation | ||
| HL_7PJV_088 | No text annotation | ||
| HL_7PJV_089 | GNRA | ||
| HL_7PJV_090 | GNRA | ||
| HL_7PJV_091 | No text annotation | ||
| HL_7PJV_092 | GNRA | ||
| HL_7PJV_093 | GNRA | ||
| HL_7PJV_094 | No text annotation | ||
| HL_7PJV_095 | No text annotation | ||
| HL_7PJV_096 | GNRA | ||
| HL_7PJV_097 | Other HL | ||
| HL_7PJV_098 | No text annotation | ||
| HL_7PJV_099 | No text annotation | ||
| HL_7PJV_100 | UNCG | ||
| HL_7PJV_101 | No text annotation | ||
| HL_7PJV_102 | No text annotation | ||
| HL_7PJV_103 | No text annotation | ||
| HL_7PJV_104 | No text annotation | ||
| HL_7PJV_105 | No text annotation | ||
| HL_7PJV_106 | No text annotation | ||
| HL_7PJV_107 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7PJV_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_4WF9_001 IL_66414.6 | |
| IL_7PJV_002 | 1/A/36:37, 1/A/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_7PJV_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_7PJV_004 | 1/A/81:85, 1/A/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_7PJV_005 | 1/A/183:184, 1/A/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_7PJV_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_7PJV_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_7PJV_008 | 1/A/269:271, 1/A/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_7PJV_009 | 1/A/274:281, 1/A/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_7PJV_010 | 1/A/293:295, 1/A/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_7PJV_011 | 1/A/481:484, 1/A/496:509 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.6 | |
| IL_7PJV_012 | 1/A/536:539, 1/A/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_7PJV_013 | 1/A/564:566, 1/A/575:577 | No text annotation Not in a motif group | homologous IL_5J7L_257 IL_95997.1 | |
| IL_7PJV_014 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_7PJV_015 | 1/A/672:674, 1/A/806:808 | No text annotation Not in a motif group | homologous IL_5J7L_259 IL_95997.1 | |
| IL_7PJV_016 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_5J7L_260 IL_17470.6 | |
| IL_7PJV_017 | 1/A/697:698, 1/A/763:765 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.2 | |
| IL_7PJV_018 | 1/A/702:703, 1/A/728:730 | Single bulged G Not in a motif group | geometric IL_5J7L_262 IL_00225.2 | |
| IL_7PJV_019 | 1/A/703:707, 1/A/724:728 | Triple sheared Not in a motif group | homologous IL_5J7L_263 IL_56467.8 | |
| IL_7PJV_020 | 1/A/738:740, 1/A/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_7PJV_021 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_7PJV_022 | 1/A/844:847, 1/A/933:934 | Other IL Not in a motif group | homologous IL_5J7L_267 IL_92001.1 | |
| IL_7PJV_023 | 1/A/847:848, 1/A/930:933 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
| IL_7PJV_024 | 1/A/850:851, 1/A/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_7PJV_025 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_7PJV_026 | 1/A/862:863, 1/A/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.2 | |
| IL_7PJV_027 | 1/A/864:868, 1/A/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_7PJV_028 | 1/A/870:872, 1/A/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_7PJV_029 | 1/A/875:879, 1/A/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_7PJV_030 | 1/A/880:883, 1/A/893:897 | No text annotation Not in a motif group | ||
| IL_7PJV_031 | 1/A/994:996, 1/A/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_7PJV_032 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_7PJV_033 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
| IL_7PJV_034 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.13 | |
| IL_7PJV_035 | 1/A/1018:1024, 1/A/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_7PJV_036 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_7PJV_037 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_7PJV_038 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_7PJV_039 | 1/A/1043:1053, 1/A/1106:1112 | No text annotation Not in a motif group | ||
| IL_7PJV_040 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_7PJV_041 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_7PJV_042 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_7PJV_043 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_7PJV_044 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_7PJV_045 | 1/A/1319:1323, 1/A/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_7PJV_046 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_7PJV_047 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_7PJV_048 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_7PJV_049 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_7PJV_050 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_7PJV_051 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
| IL_7PJV_052 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U Not in a motif group | homologous IL_5J7L_298 IL_83039.13 | |
| IL_7PJV_053 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_7PJV_054 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_7PJV_055 | 1/A/1481:1482, 1/A/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.4 | |
| IL_7PJV_056 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_7PJV_057 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_7PJV_058 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_7PJV_059 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_7PJV_060 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_306 IL_50694.2 | |
| IL_7PJV_061 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
| IL_7PJV_062 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_5J7L_308 IL_65969.2 | |
| IL_7PJV_063 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_7PJV_064 | 1/A/1720:1724, 1/A/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
| IL_7PJV_065 | 1/A/1727:1728, 1/A/1731:1733 | Single bulged C Not in a motif group | geometric IL_5J7L_311 IL_61258.12 | |
| IL_7PJV_066 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A Not in a motif group | homologous IL_7A0S_064 IL_37497.2 | |
| IL_7PJV_067 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_7PJV_068 | 1/A/1837:1840, 1/A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_7PJV_069 | 1/A/1841:1842, 1/A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_7PJV_070 | 1/A/1846:1849, 1/A/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_7PJV_071 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_7PJV_072 | 1/A/1933:1934, 1/A/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_7PJV_073 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_7PJV_074 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_7PJV_075 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_7PJV_076 | 1/A/2064:2066, 1/A/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_7PJV_077 | 1/A/2067:2070, 1/A/2441:2443 | No text annotation Not in a motif group | homologous IL_5J7L_323 NA | |
| IL_7PJV_078 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform Not in a motif group | geometric IL_5TBW_094 IL_42622.2 | |
| IL_7PJV_079 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_7PJV_080 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation Not in a motif group | homologous IL_7A0S_078 IL_95997.1 | |
| IL_7PJV_081 | 1/A/2100:2105, 1/A/2184:2189 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_7PJV_082 | 1/A/2116:2129, 1/A/2159:2164 | No text annotation Not in a motif group | ||
| IL_7PJV_083 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_7PJV_084 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_7PJV_085 | 1/A/2401:2403, 1/A/2414:2415 | Single bulged U Not in a motif group | homologous IL_4WF9_088 IL_83039.13 | |
| IL_7PJV_086 | 1/A/2453:2455, 1/A/2496:2500 | No text annotation Not in a motif group | homologous IL_5J7L_335 NA | |
| IL_7PJV_087 | 1/A/2456:2459, 1/A/2493:2495 | No text annotation Not in a motif group | homologous IL_5J7L_336 NA | |
| IL_7PJV_088 | 1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_337 IL_92788.2 | |
| IL_7PJV_089 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_7PJV_090 | 1/A/2507:2509, 1/A/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_7PJV_091 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_095 IL_90933.2 | |
| IL_7PJV_092 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_7PJV_093 | 1/A/2522:2523, 1/A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7A0S_091 IL_95601.3 | |
| IL_7PJV_094 | 1/A/2588:2591, 1/A/2603:2606 | No text annotation Not in a motif group | geometric IL_6AZ4_001 IL_69145.1 | |
| IL_7PJV_095 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_7PJV_096 | 1/A/2636:2640, 1/A/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
| IL_7PJV_097 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7A0S_094 IL_16458.1 | |
| IL_7PJV_098 | 1/A/2680:2684, 1/A/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_7PJV_099 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_7PJV_100 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_7PJV_101 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_7PJV_102 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
| IL_7PJV_103 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_7PJV_104 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_7PJV_105 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_7PJV_106 | 1/A/2847:2852, 1/A/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 | |
| IL_7PJV_107 | 1/B/17:19, 1/B/64:67 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_82068.2 | |
| IL_7PJV_108 | 1/B/23:28, 1/B/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_7PJV_109 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V9F_103 IL_09061.6 | |
| IL_7PJV_110 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_5J7L_358 IL_58103.6 | |
| IL_7PJV_111 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
| IL_7PJV_112 | 1/a/30:32, 1/a/552:553 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.2 | |
| IL_7PJV_113 | 1/a/44:45, 1/a/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_7PJV_114 | 1/a/47:52, 1/a/359:361 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_11178.1 | |
| IL_7PJV_115 | 1/a/54:56, 1/a/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_7PJV_116 | 1/a/63:66, 1/a/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_7PJV_117 | 1/a/67:69, 1/a/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_7PJV_118 | 1/a/70:73, 1/a/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_7PJV_119 | 1/a/75:76, 1/a/93:95 | Single bulged G Not in a motif group | geometric IL_5DEA_002 IL_00225.2 | |
| IL_7PJV_120 | 1/a/128:131, 1/a/231:233 | No text annotation Not in a motif group | ||
| IL_7PJV_121 | 1/a/132:136, 1/a/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
| IL_7PJV_122 | 1/a/147:153, 1/a/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_7PJV_123 | 1/a/203:206, 1/a/213:214 | Minor groove platform Not in a motif group | geometric IL_5J7L_007 IL_15052.1 | |
| IL_7PJV_124 | 1/a/242:247, 1/a/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_7PJV_125 | 1/a/249:252, 1/a/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_7PJV_126 | 1/a/292:293, 1/a/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_7PJV_127 | 1/a/367:369, 1/a/392:393 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.13 | |
| IL_7PJV_128 | 1/a/371:375, 1/a/389:390 | C-loop Not in a motif group | geometric IL_4LFB_015 IL_75255.1 | |
| IL_7PJV_129 | 1/a/375:376, 1/a/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_7PJV_130 | 1/a/409:416, 1/a/427:433 | No text annotation Not in a motif group | homologous IL_5J7L_020 IL_28026.1 | |
| IL_7PJV_131 | 1/a/440:442, 1/a/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_7PJV_132 | 1/a/446:450, 1/a/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_88269.3 | |
| IL_7PJV_133 | 1/a/450:455, 1/a/477:483 | No text annotation Not in a motif group | geometric IL_5J7L_023 IL_70801.1 | |
| IL_7PJV_134 | 1/a/455:457, 1/a/475:477 | No text annotation Not in a motif group | geometric IL_4WF9_083 IL_95997.1 | |
| IL_7PJV_135 | 1/a/504:511, 1/a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_7PJV_136 | 1/a/515:521, 1/a/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_7PJV_137 | 1/a/569:575, 1/a/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
| IL_7PJV_138 | 1/a/580:584, 1/a/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_7PJV_139 | 1/a/594:596, 1/a/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_7PJV_140 | 1/a/597:598, 1/a/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_7PJV_141 | 1/a/605:612, 1/a/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_7PJV_142 | 1/a/654:655, 1/a/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_7PJV_143 | 1/a/659:660, 1/a/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7PJV_144 | Tandem non-canonical cWW pairs | ||
| IL_7PJV_145 | No text annotation | ||
| IL_7PJV_146 | Kink-turn | ||
| IL_7PJV_147 | Left turn | ||
| IL_7PJV_148 | tSH-tHW-tHS | ||
| IL_7PJV_149 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_7PJV_150 | Single bulged A | ||
| IL_7PJV_151 | Single bulged G | ||
| IL_7PJV_152 | Minor groove platform | ||
| IL_7PJV_153 | Minor groove platform | ||
| IL_7PJV_154 | Minor groove platform | ||
| IL_7PJV_155 | Single stack bend | ||
| IL_7PJV_156 | No text annotation | ||
| IL_7PJV_157 | Single bulged U | ||
| IL_7PJV_158 | CA cWW | ||
| IL_7PJV_159 | Isolated cWS basepair | ||
| IL_7PJV_160 | Minor groove platform | ||
| IL_7PJV_161 | Single bulged A | ||
| IL_7PJV_162 | No text annotation | ||
| IL_7PJV_163 | No text annotation | ||
| IL_7PJV_164 | Minor groove platform | ||
| IL_7PJV_165 | No text annotation | ||
| IL_7PJV_166 | No text annotation | ||
| IL_7PJV_167 | No text annotation | ||
| IL_7PJV_168 | Triple sheared | ||
| IL_7PJV_169 | No text annotation | ||
| IL_7PJV_170 | No text annotation | ||
| IL_7PJV_171 | No text annotation | ||
| IL_7PJV_172 | No text annotation | ||
| IL_7PJV_173 | Tandem non-canonical cWW pairs | ||
| IL_7PJV_174 | No text annotation | ||
| IL_7PJV_175 | Triple sheared related | ||
| IL_7PJV_176 | Minor groove platform | ||
| IL_7PJV_177 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7PJV_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation Not in a motif group | ||
| J3_7PJV_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_7PJV_003 | 1/A/297:301, 1/A/316:325, 1/A/337:341 | No text annotation Not in a motif group | ||
| J3_7PJV_004 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_7PJV_005 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation Not in a motif group | ||
| J3_7PJV_006 | 1/A/1055:1062, 1/A/1076:1091, 1/A/1100:1104 | No text annotation Not in a motif group | ||
| J3_7PJV_007 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_7PJV_008 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_7PJV_009 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_7PJV_010 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_7PJV_011 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation Not in a motif group | ||
| J3_7PJV_012 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_7PJV_013 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_7PJV_014 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_7PJV_015 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA | |
| J3_7PJV_016 | 1/a/46:47, 1/a/361:367, 1/a/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_7PJV_017 | 1/a/586:588, 1/a/651:654, 1/a/754:755 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7PJV_018 | No text annotation | ||
| J3_7PJV_019 | No text annotation | ||
| J3_7PJV_020 | No text annotation | ||
| J3_7PJV_021 | No text annotation | ||
| J3_7PJV_022 | No text annotation | ||
| J3_7PJV_023 | No text annotation | ||
| J3_7PJV_024 | No text annotation | ||
| J3_7PJV_025 | No text annotation | ||
| J3_7PJV_026 | No text annotation | ||
| J3_7PJV_027 | No text annotation |
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