8AGZ Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8AGZ_001 | 1/f/38:45 | No text annotation Not in a motif group | homologous HL_8C3A_001 HL_06192.2 | |
| HL_8AGZ_002 | 1/f/69:74 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_8AGZ_003 | 1/f/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_8AGZ_004 | 1/f/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_98426.1 | |
| HL_8AGZ_005 | 1/f/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_8AGZ_006 | 1/f/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_8AGZ_007 | 1/f/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_8AGZ_008 | 1/f/278:287 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_8AGZ_009 | 1/f/303:312 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_12078.2 | |
| HL_8AGZ_010 | 1/f/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_8AGZ_011 | 1/f/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_8AGZ_012 | 1/f/543:548 | No text annotation Not in a motif group | homologous HL_5TBW_012 HL_86373.2 | |
| HL_8AGZ_013 | 1/f/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_8AGZ_014 | 1/f/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_8AGZ_015 | 1/f/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_8AGZ_016 | 1/f/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_8AGZ_017 | 1/f/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_8AGZ_018 | 1/f/763:768 | No text annotation Not in a motif group | homologous HL_8C3A_018 HL_34168.2 | |
| HL_8AGZ_019 | 1/f/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_8AGZ_020 | 1/f/876:885 | No text annotation Not in a motif group | homologous HL_8C3A_020 HL_39334.6 | |
| HL_8AGZ_021 | 1/f/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_8AGZ_022 | 1/f/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_8AGZ_023 | 1/f/1023:1029 | GNRA Not in a motif group | homologous HL_5TBW_023 HL_42097.1 | |
| HL_8AGZ_024 | 1/f/1076:1083 | No text annotation Not in a motif group | geometric HL_5TBW_024 HL_71554.2 | |
| HL_8AGZ_025 | 1/f/1126:1132 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_42097.1 | |
| HL_8AGZ_026 | 1/f/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_8AGZ_027 | 1/f/1239:1249 | No text annotation Not in a motif group | homologous HL_8C3A_027 HL_07145.1 | |
| HL_8AGZ_028 | 1/f/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_8AGZ_029 | 1/f/1347:1357 | No text annotation Not in a motif group | homologous HL_5TBW_029 HL_89098.1 | |
| HL_8AGZ_030 | 1/f/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_8AGZ_031 | 1/f/1462:1470 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_8AGZ_032 | 1/f/1506:1512 | No text annotation Not in a motif group | homologous HL_8C3A_032 HL_46680.1 | |
| HL_8AGZ_033 | 1/f/1544:1549 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_8AGZ_034 | 1/f/1563:1576 | No text annotation Not in a motif group | ||
| HL_8AGZ_035 | 1/f/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_8AGZ_036 | 1/f/1634:1639 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.1 | |
| HL_8AGZ_037 | 1/f/1680:1688 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_60812.1 | |
| HL_8AGZ_038 | 1/f/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_8AGZ_039 | 1/f/1759:1766 | No text annotation Not in a motif group | ||
| HL_8AGZ_040 | 1/f/1792:1796 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_38927.2 | |
| HL_8AGZ_041 | 1/f/1844:1851 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_8AGZ_042 | 1/f/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_8AGZ_043 | 1/f/1923:1928 | UNCG Not in a motif group | geometric HL_4V9F_044 HL_03562.2 | |
| HL_8AGZ_044 | 1/f/1952:2094 | No text annotation Not in a motif group | ||
| HL_8AGZ_045 | 1/f/2110:2114 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_20062.1 | |
| HL_8AGZ_046 | 1/f/2135:2145 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.5 | |
| HL_8AGZ_047 | 1/f/2164:2170 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_8AGZ_048 | 1/f/2220:2225 | No text annotation Not in a motif group | homologous HL_8C3A_048 HL_42097.1 | |
| HL_8AGZ_049 | 1/f/2253:2263 | No text annotation Not in a motif group | ||
| HL_8AGZ_050 | 1/f/2292:2300 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_8AGZ_051 | 1/f/2369:2378 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_8AGZ_052 | 1/f/2470:2475 | No text annotation Not in a motif group | ||
| HL_8AGZ_053 | 1/f/2535:2544 | No text annotation Not in a motif group | ||
| HL_8AGZ_054 | 1/f/2568:2573 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_8AGZ_055 | 1/f/2616:2624 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_8AGZ_056 | 1/f/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_8AGZ_057 | 1/f/2673:2681 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_8AGZ_058 | 1/f/2693:2700 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.2 | |
| HL_8AGZ_059 | 1/f/2724:2732 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_8AGZ_060 | 1/f/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_8AGZ_061 | 1/f/2776:2784 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.1 | |
| HL_8AGZ_062 | 1/f/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_8AGZ_063 | 1/f/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_8AGZ_064 | 1/f/2920:2926 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_43656.2 | |
| HL_8AGZ_065 | 1/f/2963:2968 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.1 | |
| HL_8AGZ_066 | 1/f/3025:3030 | GNRA Not in a motif group | geometric HL_6UFH_002 HL_42097.1 | |
| HL_8AGZ_067 | 1/f/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_8AGZ_068 | 1/f/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_8AGZ_069 | 1/f/3194:3197 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_98426.1 | |
| HL_8AGZ_070 | 1/f/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_8AGZ_071 | 1/f/3303:3311 | No text annotation Not in a motif group | geometric HL_5TBW_070 HL_27930.1 | |
| HL_8AGZ_072 | 1/f/3350:3353 | No text annotation Not in a motif group | geometric HL_5VW1_002 HL_38927.2 | |
| HL_8AGZ_073 | 1/h/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_8AGZ_074 | 1/h/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_8AGZ_075 | 1/i/69:89 | No text annotation Not in a motif group | ||
| HL_8AGZ_076 | 1/i/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_8AGZ_077 | 1/i/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_8AGZ_078 | 1/x/13:22 | No text annotation Not in a motif group | homologous HL_3AMU_001 HL_25462.2 | |
| HL_8AGZ_079 | 1/x/31:39 | No text annotation Not in a motif group | ||
| HL_8AGZ_080 | 1/x/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V9Q_215 HL_22280.1 | |
| HL_8AGZ_081 | 1/y/13:22 | No text annotation Not in a motif group | homologous HL_4YYE_001 NA | |
| HL_8AGZ_082 | 1/y/31:39 | No text annotation Not in a motif group | ||
| HL_8AGZ_083 | 1/y/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V9Q_215 HL_22280.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8AGZ_001 | 1/f/3:4, 1/i/155:156 | No text annotation Not in a motif group | ||
| IL_8AGZ_002 | 1/f/7:8, 1/i/150:152 | Single bulged C Not in a motif group | homologous IL_5TBW_002 IL_61258.12 | |
| IL_8AGZ_003 | 1/f/13:15, 1/i/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_8AGZ_004 | 1/f/27:28, 1/f/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_8AGZ_005 | 1/f/31:38, 1/f/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_8AGZ_006 | 1/f/82:89, 1/f/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_8AGZ_007 | 1/f/123:124, 1/f/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_8AGZ_008 | 1/f/125:127, 1/f/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_8AGZ_009 | 1/f/163:165, 1/f/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_8AGZ_010 | 1/f/169:170, 1/f/248:253 | No text annotation Not in a motif group | homologous IL_5TBW_010 IL_74684.1 | |
| IL_8AGZ_011 | 1/f/177:178, 1/f/238:241 | Major groove platform Not in a motif group | geometric IL_7A0S_073 IL_27635.1 | |
| IL_8AGZ_012 | 1/f/189:191, 1/f/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_8AGZ_013 | 1/f/337:339, 1/i/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_8AGZ_014 | 1/f/376:379, 1/f/390:403 | No text annotation Not in a motif group | geometric IL_5TBW_014 IL_60992.6 | |
| IL_8AGZ_015 | 1/f/404:410, 1/i/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_8AGZ_016 | 1/f/429:431, 1/f/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_8AGZ_017 | 1/f/435:495, 1/f/618:624 | No text annotation Not in a motif group | ||
| IL_8AGZ_018 | 1/f/512:513, 1/f/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_8AGZ_019 | 1/f/517:525, 1/f/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_8AGZ_020 | 1/f/531:538, 1/f/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_8AGZ_021 | 1/f/668:670, 1/f/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_8AGZ_022 | 1/f/680:684, 1/f/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_8AGZ_023 | 1/f/725:728, 1/f/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.1 | |
| IL_8AGZ_024 | 1/f/752:753, 1/f/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.2 | |
| IL_8AGZ_025 | 1/f/755:756, 1/f/775:777 | No text annotation Not in a motif group | homologous IL_8C3A_027 IL_83039.13 | |
| IL_8AGZ_026 | 1/f/758:763, 1/f/768:773 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.2 | |
| IL_8AGZ_027 | 1/f/803:805, 1/f/938:940 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_95997.1 | |
| IL_8AGZ_028 | 1/f/805:809, 1/f/931:938 | No text annotation Not in a motif group | homologous IL_8C3A_030 IL_17470.6 | |
| IL_8AGZ_029 | 1/f/833:834, 1/f/859:861 | Single bulged G Not in a motif group | geometric IL_7A0S_017 IL_00225.2 | |
| IL_8AGZ_030 | 1/f/834:838, 1/f/855:859 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.8 | |
| IL_8AGZ_031 | 1/f/869:872, 1/f/888:890 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_8AGZ_032 | 1/f/873:875, 1/f/886:887 | Single bulged U Not in a motif group | homologous IL_5TBW_032 IL_83039.13 | |
| IL_8AGZ_033 | 1/f/907:909, 1/f/919:923 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_8AGZ_034 | 1/f/954:956, 1/f/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_8AGZ_035 | 1/f/969:970, 1/f/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_8AGZ_036 | 1/f/977:982, 1/f/1101:1104 | No text annotation Not in a motif group | ||
| IL_8AGZ_037 | 1/f/983:985, 1/f/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_8AGZ_038 | 1/f/991:997, 1/f/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5TBW_038 IL_93830.3 | |
| IL_8AGZ_039 | 1/f/997:998, 1/f/1050:1052 | Minor groove platform Not in a motif group | geometric IL_6DLR_003 IL_42622.2 | |
| IL_8AGZ_040 | 1/f/999:1004, 1/f/1046:1049 | No text annotation Not in a motif group | homologous IL_8C3A_043 IL_02509.1 | |
| IL_8AGZ_041 | 1/f/1006:1009, 1/f/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_041 IL_30621.2 | |
| IL_8AGZ_042 | 1/f/1009:1011, 1/f/1039:1041 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_8AGZ_043 | 1/f/1014:1018, 1/f/1034:1036 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_002 IL_82068.2 | |
| IL_8AGZ_044 | 1/f/1069:1071, 1/f/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_95997.1 | |
| IL_8AGZ_045 | 1/f/1074:1076, 1/f/1083:1084 | No text annotation Not in a motif group | homologous IL_8C3A_048 IL_00225.2 | |
| IL_8AGZ_046 | 1/f/1120:1122, 1/f/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_8AGZ_047 | 1/f/1123:1125, 1/f/1133:1135 | No text annotation Not in a motif group | homologous IL_8C3A_050 IL_52767.2 | |
| IL_8AGZ_048 | 1/f/1167:1171, 1/f/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_8AGZ_049 | 1/f/1173:1180, 1/f/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.7 | |
| IL_8AGZ_050 | 1/f/1180:1182, 1/f/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.13 | |
| IL_8AGZ_051 | 1/f/1187:1194, 1/f/1314:1319 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_8AGZ_052 | 1/f/1194:1205, 1/f/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_8AGZ_053 | 1/f/1207:1209, 1/f/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_8AGZ_054 | 1/f/1218:1226, 1/f/1283:1287 | Kink-turn Not in a motif group | homologous IL_5TBW_054 IL_90538.4 | |
| IL_8AGZ_055 | 1/f/1234:1238, 1/f/1250:1254 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_8AGZ_056 | 1/f/1262:1266, 1/f/1275:1277 | No text annotation Not in a motif group | homologous IL_8C3A_059 IL_05564.2 | |
| IL_8AGZ_057 | 1/f/1376:1378, 1/f/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_8AGZ_058 | 1/f/1385:1387, 1/f/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_8AGZ_059 | 1/f/1388:1395, 1/f/1415:1419 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.2 | |
| IL_8AGZ_060 | 1/f/1398:1400, 1/f/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_8AGZ_061 | 1/f/1444:1450, 1/f/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_8AGZ_062 | 1/f/1500:1505, 1/f/1513:1516 | No text annotation Not in a motif group | homologous IL_8C3A_066 IL_93630.2 | |
| IL_8AGZ_063 | 1/f/1532:1536, 1/f/1585:1590 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_8AGZ_064 | 1/f/1618:1621, 1/f/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_8AGZ_065 | 1/f/1623:1626, 1/f/1817:1822 | Multiple bulged bases with near cWW Not in a motif group | homologous IL_5TBW_065 IL_58686.2 | |
| IL_8AGZ_066 | 1/f/1627:1631, 1/f/1811:1816 | No text annotation Not in a motif group | homologous IL_8C3A_072 IL_48431.1 | |
| IL_8AGZ_067 | 1/f/1645:1649, 1/f/1806:1810 | No text annotation Not in a motif group | homologous IL_8C3A_073 IL_56467.8 | |
| IL_8AGZ_068 | 1/f/1661:1663, 1/f/1786:1788 | No text annotation Not in a motif group | homologous IL_8C3A_074 IL_95997.1 | |
| IL_8AGZ_069 | 1/f/1669:1670, 1/f/1778:1780 | No text annotation Not in a motif group | homologous IL_8C3A_075 IL_61258.12 | |
| IL_8AGZ_070 | 1/f/1670:1671, 1/f/1776:1778 | No text annotation Not in a motif group | homologous IL_8C3A_076 IL_76488.2 | |
| IL_8AGZ_071 | 1/f/1694:1698, 1/f/1747:1752 | No text annotation Not in a motif group | homologous IL_8C3A_077 IL_69313.1 | |
| IL_8AGZ_072 | 1/f/1702:1707, 1/f/1737:1743 | No text annotation Not in a motif group | homologous IL_5TBW_072 IL_39753.1 | |
| IL_8AGZ_073 | 1/f/1711:1717, 1/f/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_8AGZ_074 | 1/f/1883:1889, 1/f/2346:2349 | No text annotation Not in a motif group | homologous IL_8C3A_080 IL_49460.2 | |
| IL_8AGZ_075 | 1/f/1895:1897, 1/f/2338:2340 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_8AGZ_076 | 1/f/1898:1901, 1/f/2336:2337 | No text annotation Not in a motif group | homologous IL_8C3A_082 IL_50694.2 | |
| IL_8AGZ_077 | 1/f/1901:1906, 1/f/2333:2336 | Intercalated tWH Not in a motif group | geometric IL_5TBW_077 IL_82842.2 | |
| IL_8AGZ_078 | 1/f/1918:1923, 1/f/1928:1934 | No text annotation Not in a motif group | homologous IL_8C3A_084 IL_65969.2 | |
| IL_8AGZ_079 | 1/f/1940:1942, 1/f/2106:2108 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_8AGZ_080 | 1/f/1947:1948, 1/f/2098:2101 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_8AGZ_081 | 1/f/2128:2129, 1/f/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_8AGZ_082 | 1/f/2156:2161, 1/f/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_8AGZ_083 | 1/f/2196:2199, 1/f/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.1 | |
| IL_8AGZ_084 | 1/f/2200:2201, 1/f/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_8AGZ_085 | 1/f/2204:2206, 1/f/2237:2238 | Single bulged U Not in a motif group | geometric IL_2R8S_004 IL_83039.13 | |
| IL_8AGZ_086 | 1/f/2206:2210, 1/f/2235:2237 | Other IL Not in a motif group | geometric IL_4PDB_001 IL_22248.1 | |
| IL_8AGZ_087 | 1/f/2211:2217, 1/f/2228:2234 | No text annotation Not in a motif group | homologous IL_8C3A_093 IL_36973.6 | |
| IL_8AGZ_088 | 1/f/2276:2277, 1/f/2307:2310 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_59677.2 | |
| IL_8AGZ_089 | 1/f/2277:2288, 1/f/2304:2307 | No text annotation Not in a motif group | homologous IL_8C3A_095 IL_81589.2 | |
| IL_8AGZ_090 | 1/f/2391:2394, 1/f/2986:2988 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_8AGZ_091 | 1/f/2396:2398, 1/f/2981:2984 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_8AGZ_092 | 1/f/2409:2411, 1/f/2811:2812 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.13 | |
| IL_8AGZ_093 | 1/f/2412:2413, 1/f/2807:2810 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_8AGZ_094 | 1/f/2423:2425, 1/f/2604:2607 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_8AGZ_095 | 1/f/2435:2437, 1/f/2510:2512 | No text annotation Not in a motif group | geometric IL_2ZKO_001 IL_95997.1 | |
| IL_8AGZ_096 | 1/f/2444:2445, 1/f/2501:2503 | Single bulged A Not in a motif group | geometric IL_7RQB_002 IL_37497.2 | |
| IL_8AGZ_097 | 1/f/2451:2462, 1/f/2493:2495 | No text annotation Not in a motif group | ||
| IL_8AGZ_098 | 1/f/2466:2469, 1/f/2476:2489 | No text annotation Not in a motif group | geometric IL_3U4M_003 IL_75283.2 | |
| IL_8AGZ_099 | 1/f/2520:2526, 1/f/2584:2587 | No text annotation Not in a motif group | homologous IL_8C3A_106 IL_74114.1 | |
| IL_8AGZ_100 | 1/f/2614:2615, 1/f/2625:2627 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.2 | |
| IL_8AGZ_101 | 1/f/2666:2668, 1/f/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.7 | |
| IL_8AGZ_102 | 1/f/2718:2721, 1/f/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_8AGZ_103 | 1/f/2770:2773, 1/f/2787:2788 | No text annotation Not in a motif group | homologous IL_8C3A_110 IL_76488.2 | |
| IL_8AGZ_104 | 1/f/2823:2824, 1/f/2865:2867 | Major groove platform Not in a motif group | homologous IL_5TBW_102 IL_27635.1 | |
| IL_8AGZ_105 | 1/f/2824:2826, 1/f/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_8AGZ_106 | 1/f/2826:2828, 1/f/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_8AGZ_107 | 1/f/2828:2830, 1/f/2858:2862 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_92788.2 | |
| IL_8AGZ_108 | 1/f/2835:2839, 1/f/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_8AGZ_109 | 1/f/2876:2877, 1/f/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_8AGZ_110 | 1/f/2879:2881, 1/f/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_8AGZ_111 | 1/f/2881:2882, 1/f/2940:2943 | No text annotation Not in a motif group | homologous IL_8C3A_117 IL_71530.2 | |
| IL_8AGZ_112 | 1/f/2889:2891, 1/f/2912:2914 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_8AGZ_113 | 1/f/2891:2892, 1/f/2909:2912 | No text annotation Not in a motif group | homologous IL_8C3A_119 IL_95601.3 | |
| IL_8AGZ_114 | 1/f/2918:2920, 1/f/2926:2928 | No text annotation Not in a motif group | homologous IL_8C3A_120 IL_95997.1 | |
| IL_8AGZ_115 | 1/f/2960:2961, 1/f/2970:2972 | Single bulged A Not in a motif group | geometric IL_1U9S_001 IL_37497.2 | |
| IL_8AGZ_116 | 1/f/3004:3007, 1/f/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_8AGZ_117 | 1/f/3012:3014, 1/f/3040:3042 | No text annotation Not in a motif group | homologous IL_5TBW_115 IL_95997.1 | |
| IL_8AGZ_118 | 1/f/3018:3025, 1/f/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_116 IL_04346.7 | |
| IL_8AGZ_119 | 1/f/3047:3051, 1/f/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_8AGZ_120 | 1/f/3054:3059, 1/f/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_8AGZ_121 | 1/f/3063:3064, 1/f/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_8AGZ_122 | 1/f/3103:3107, 1/f/3127:3131 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.2 | |
| IL_8AGZ_123 | 1/f/3164:3166, 1/f/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_8AGZ_124 | 1/f/3168:3170, 1/f/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_95997.1 | |
| IL_8AGZ_125 | 1/f/3177:3179, 1/f/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_8AGZ_126 | 1/f/3179:3188, 1/f/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_8AGZ_127 | 1/f/3193:3194, 1/f/3197:3199 | Single bulged U Not in a motif group | homologous IL_5TBW_125 IL_83039.13 | |
| IL_8AGZ_128 | 1/f/3225:3229, 1/f/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_8AGZ_129 | 1/f/3233:3235, 1/f/3252:3254 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_8AGZ_130 | 1/f/3235:3238, 1/f/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_128 IL_30621.2 | |
| IL_8AGZ_131 | 1/f/3300:3303, 1/f/3311:3314 | No text annotation Not in a motif group | homologous IL_8C3A_135 IL_30621.2 | |
| IL_8AGZ_132 | 1/f/3318:3320, 1/f/3387:3388 | Single bulged U Not in a motif group | homologous IL_5TBW_130 IL_83039.13 | |
| IL_8AGZ_133 | 1/f/3324:3325, 1/f/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_8AGZ_134 | 1/f/3328:3330, 1/f/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_8AGZ_135 | 1/f/3332:3337, 1/f/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.5 | |
| IL_8AGZ_136 | 1/f/3340:3342, 1/f/3363:3364 | Single bulged U Not in a motif group | geometric IL_5TBW_134 IL_83039.13 | |
| IL_8AGZ_137 | 1/f/3342:3345, 1/f/3360:3363 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_8AGZ_138 | 1/f/3349:3350, 1/f/3353:3356 | No text annotation Not in a motif group | homologous IL_8C3A_142 IL_59677.2 | |
| IL_8AGZ_139 | 1/h/15:16, 1/h/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_8AGZ_140 | 1/h/21:27, 1/h/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_8AGZ_141 | 1/h/28:29, 1/h/49:52 | Minor groove platform Not in a motif group | homologous IL_5TBW_374 IL_63797.2 | |
| IL_8AGZ_142 | 1/h/29:30, 1/h/47:49 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_8AGZ_143 | 1/h/32:36, 1/h/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_8AGZ_144 | 1/h/72:80, 1/h/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_8AGZ_145 | 1/h/84:87, 1/h/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_8AGZ_146 | 1/i/44:64, 1/i/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_8AGZ_147 | 1/i/64:66, 1/i/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_8AGZ_148 | 1/i/68:69, 1/i/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_8AGZ_149 | 1/x/5:7, 1/x/66:68 | No text annotation Not in a motif group | homologous IL_4WSM_380 NA | |
| IL_8AGZ_150 | 1/y/5:7, 1/y/66:68 | No text annotation Not in a motif group | homologous IL_5EL4_358 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8AGZ_001 | 1/f/113:123, 1/f/149:158, 1/f/263:267 | No text annotation Not in a motif group | ||
| J3_8AGZ_002 | 1/f/369:376, 1/f/403:404, 1/i/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_8AGZ_003 | 1/f/502:503, 1/f/588:597, 1/f/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_8AGZ_004 | 1/f/814:820, 1/f/905:907, 1/f/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_8AGZ_005 | 1/f/828:831, 1/f/863:867, 1/f/892:897 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_8AGZ_006 | 1/f/986:987, 1/f/1062:1066, 1/f/1092:1098 | No text annotation Not in a motif group | homologous J3_5TBW_006 NA | |
| J3_8AGZ_007 | 1/f/1230:1232, 1/f/1256:1262, 1/f/1277:1279 | No text annotation Not in a motif group | homologous J3_8C3A_005 NA | |
| J3_8AGZ_008 | 1/f/1479:1485, 1/f/1857:1859, 1/f/1871:1874 | No text annotation Not in a motif group | homologous J3_8C3A_006 NA | |
| J3_8AGZ_009 | 1/f/1488:1491, 1/f/1837:1843, 1/f/1852:1854 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_8AGZ_010 | 1/f/1526:1531, 1/f/1591:1595, 1/f/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_8AGZ_011 | 1/f/1631:1632, 1/f/1641:1645, 1/f/1810:1811 | No text annotation Not in a motif group | ||
| J3_8AGZ_012 | 1/f/2432:2435, 1/f/2512:2517, 1/f/2590:2597 | No text annotation Not in a motif group | homologous J3_8C3A_008 NA | |
| J3_8AGZ_013 | 1/f/2529:2532, 1/f/2547:2563, 1/f/2578:2581 | No text annotation Not in a motif group | ||
| J3_8AGZ_014 | 1/f/2664:2666, 1/f/2690:2692, 1/f/2701:2706 | No text annotation Not in a motif group | homologous J3_8C3A_010 NA | |
| J3_8AGZ_015 | 1/f/2886:2889, 1/f/2914:2916, 1/f/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_8AGZ_016 | 1/f/3298:3300, 1/f/3314:3318, 1/f/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_8AGZ_017 | 1/h/9:14, 1/h/66:67, 1/h/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA |
Problematic loops
No problematic loops
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