Hairpin Loop Motif Atlas Release 3.83

#	Motif	Num Nts	Instances
1	HL_42097.2 View exemplar Basepair signature: cWW-tSH-F-F History status: Exact match GNRA (184) Other HL (12) GNRA with one bulged base (10) GNRA with GA tSW pair (4)	6	291
2	HL_22280.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Exact match T-loop with 2 stacked bulged bases (48) Other HL (2)	7	61
3	HL_03562.2 View exemplar Basepair signature: cWW-tSW-F History status: Exact match UNCG (28) Other HL (2)	5	56
4	HL_89380.2 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Exact match T-loop with 2 stacked bulged bases (11) T-loop with 2 bulged bases not stacked (8) T-loop with 1 bulged base (6)	7	37
5	HL_87030.2 View exemplar Basepair signature: cWW-F-F History status: Exact match Other HL (17) GNRA (1)	4	33
6	HL_53597.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match tRNA anticodon loop (19) Guanidine riboswitch aptamer P2 hairpin (1) Varkud satellite (VS) ribozyme helix 1 (1)	8	31
7	HL_98984.2 View exemplar Basepair signature: cWW-F History status: Exact match	3	28
8	HL_38927.2 View exemplar Basepair signature: cWW-F History status: Exact match	3	27
9	HL_46680.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Ribsomal LSU H95 (5)	5	27
10	HL_12078.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	26
11	HL_71309.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F History status: Exact match T-loop with 2 stacked bulged bases (21)	9	25
12	HL_27930.1 View exemplar Basepair signature: cWW-cSW-F History status: Exact match Other HL (1) T-loop with 1 bulged base (1)	5	22
13	HL_25462.2 View exemplar Basepair signature: cWW-cWS History status: Exact match	4	21
14	HL_08002.9 View exemplar Basepair signature: cWW-tWH-F-F History status: Updated, 1 parent	6	19
15	HL_53171.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	18
16	HL_76539.2 View exemplar Basepair signature: cWW-F History status: Exact match Other HL (3)	3	17
17	HL_69023.2 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match	8	16
18	HL_28980.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents	3	16
19	HL_89098.1 View exemplar Basepair signature: cWW-F History status: Exact match	0	15
20	HL_79921.3 View exemplar Basepair signature: cWW-tSW-F History status: Updated, 1 parent	0	15
21	HL_75407.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	15
22	HL_84085.2 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: Exact match	8	15
23	HL_96598.1 View exemplar Basepair signature: cWW History status: Exact match	2	15
24	HL_06192.2 View exemplar Basepair signature: cWW-tSH-F-F History status: Exact match	6	14
25	HL_64430.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	13
26	HL_30784.2 View exemplar Basepair signature: cWW-tSH-F History status: Exact match Other HL (1) GNRA (1)	5	12
27	HL_09136.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	12
28	HL_91104.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents Other HL (1)	3	12
29	HL_87939.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	11
30	HL_12326.1 View exemplar Basepair signature: cWW-F-F-tSH-F-F-F History status: Exact match	9	11
31	HL_71554.2 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Exact match	7	11
32	HL_14843.1 View exemplar Basepair signature: cWW-cWS History status: Exact match tRNA Met D-loop (1)	0	11
33	HL_34168.2 View exemplar Basepair signature: cWW-cWW-F History status: Exact match Other HL (1)	5	10
34	HL_73266.6 View exemplar Basepair signature: cWW-F-F-cSW-cSH-F History status: Exact match	0	10
35	HL_49678.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	9
36	HL_53837.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	9
37	HL_53845.1 View exemplar Basepair signature: cWW-tSH History status: Exact match Other HL (2) GNRA (2)	4	9
38	HL_26881.1 View exemplar Basepair signature: cWW-tWH-F-F History status: Exact match	6	9
39	HL_67216.7 View exemplar Basepair signature: cWW-tSH-F-F History status: Exact match	6	9
40	HL_49288.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Exact match	7	9
41	HL_84503.2 View exemplar Basepair signature: cWW-cWS-F-F History status: Exact match	0	8
42	HL_97896.2 View exemplar Basepair signature: cWW-F History status: Exact match	0	8
43	HL_43656.2 View exemplar Basepair signature: cWW-tSH History status: Exact match	4	8
44	HL_56677.7 View exemplar Basepair signature: cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW History status: Exact match	13	8
45	HL_51824.1 View exemplar Basepair signature: cWW-F-F-tSH-F-F History status: Exact match	8	8
46	HL_66853.1 View exemplar Basepair signature: cWW-cWS-F-cSH History status: Exact match	7	8
47	HL_07145.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	8
48	HL_10278.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	8
49	HL_36684.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	0	7
50	HL_64365.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	7
51	HL_32617.4 View exemplar Basepair signature: cWW-F-cSH History status: Exact match tRNA Sec D-loop (4) CRISPR-Cas9 crRNA hairpin 4 (1)	5	7
52	HL_19870.6 View exemplar Basepair signature: cWW-tSH-tHH-tWW-F-F-F History status: Exact match	11	7
53	HL_90617.2 View exemplar Basepair signature: cWW-tSH History status: Exact match	4	7
54	HL_10895.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	7
55	HL_04171.5 View exemplar Basepair signature: cWW-cWW-F-F-cSS-F-F History status: Exact match	0	7
56	HL_43613.5 View exemplar Basepair signature: cWW-tWH-tWH-F History status: Exact match	7	6
57	HL_32369.1 View exemplar Basepair signature: cWW-tSW-F History status: Exact match UNCG (1)	5	6
58	HL_98426.1 View exemplar Basepair signature: cWW-F History status: Exact match	0	6
59	HL_39334.6 View exemplar Basepair signature: cWW-cWS-tSW-F-F History status: Exact match	0	6
60	HL_94651.3 View exemplar Basepair signature: cWW-tSS History status: Exact match	4	6
61	HL_94803.2 View exemplar Basepair signature: cWW History status: Exact match	2	6
62	HL_02862.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	0	6
63	HL_52841.1 View exemplar Basepair signature: cWW-F History status: Exact match	0	6
64	HL_20743.3 View exemplar Basepair signature: cWW-F-F-cSS-F History status: Exact match	7	6
65	HL_90642.6 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Exact match	0	6
66	HL_16173.1 View exemplar Basepair signature: cWW-F History status: Exact match Other HL (1)	3	6
67	HL_91058.1 View exemplar Basepair signature: cWW-cWH History status: Exact match	4	6
68	HL_84193.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	6
69	HL_86769.3 View exemplar Basepair signature: cWW-F-cSS-cSH History status: Exact match	0	6
70	HL_04221.1 View exemplar Basepair signature: cWW-cWS-tSH-cWS-F History status: Exact match tRNA Leu D-loop (5)	8	5
71	HL_18177.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	5
72	HL_60812.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	0	5
73	HL_01057.1 View exemplar Basepair signature: cWW History status: Exact match	0	5
74	HL_89881.2 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F History status: Exact match	10	5
75	HL_85680.1 View exemplar Basepair signature: cWW-tSH-F History status: Exact match	0	5
76	HL_14449.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	0	5
77	HL_82231.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Exact match	0	5
78	HL_99167.1 View exemplar Basepair signature: cWW-F-F-F-F-F-cSH-cSH History status: Exact match	10	5
79	HL_76501.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	0	5
80	HL_06285.2 View exemplar Basepair signature: cWW-cWW-F-F-tSH-F-F-F-F-F History status: Exact match	13	5
81	HL_40069.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	5
82	HL_22031.1 View exemplar Basepair signature: cWW-cWW-tWH-F-F-F History status: Exact match	9	5
83	HL_78614.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	5
84	HL_73530.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	4
85	HL_07579.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	4
86	HL_37658.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Turnip yellow mosaic virus TLS RNA anticodon loop (1)	0	4
87	HL_50142.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Other HL (1)	0	4
88	HL_74322.1 View exemplar Basepair signature: cWW-tSW-F History status: Exact match	5	4
89	HL_43667.1 View exemplar Basepair signature: cWW-cWW-F-F History status: Exact match	6	4
90	HL_24068.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	4
91	HL_83808.1 View exemplar Basepair signature: cWW-tWW-F-F-F History status: Exact match	0	4
92	HL_77232.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents tRNA anticodon loop (1)	6	4
93	HL_47100.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	4
94	HL_67667.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	0	4
95	HL_91503.4 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	4
96	HL_11805.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	3
97	HL_92229.2 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Exact match	0	3
98	HL_31581.5 View exemplar Basepair signature: cWW-F-F-F-cSH-F-F-F-F History status: Exact match	0	3
99	HL_22629.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	3
100	HL_23083.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	3
101	HL_81205.2 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	14	3
102	HL_12758.2 View exemplar Basepair signature: cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH History status: Exact match	0	3
103	HL_85445.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: Exact match	0	3
104	HL_81440.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	3
105	HL_01226.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Exact match	0	3
106	HL_50537.4 View exemplar Basepair signature: cWW-cWW-F-F History status: Exact match	6	3
107	HL_19727.1 View exemplar Basepair signature: cWW-F-F History status: New id, 1 parent	0	3
108	HL_94352.5 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	3
109	HL_71924.2 View exemplar Basepair signature: cWW-tSH-tHW-F-F-F-F History status: Exact match	0	3
110	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	0	3
111	HL_06048.2 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: Exact match	0	3
112	HL_76406.4 View exemplar Basepair signature: cWW-F-cWH-F-F-F-F History status: Exact match	0	3
113	HL_86332.1 View exemplar Basepair signature: cWW-tSH-cWS-F-F-F History status: Exact match	0	3
114	HL_46766.2 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match	0	3
115	HL_66226.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	3
116	HL_15708.2 View exemplar Basepair signature: cWW-F-F-cSH History status: Exact match	6	3
117	HL_96366.1 View exemplar Basepair signature: cWW-cWW-tWW-F-F-F-F History status: Exact match	10	3
118	HL_03345.1 View exemplar Basepair signature: cWW-cSW-tSH-F History status: Exact match	0	3
119	HL_73247.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	3
120	HL_86373.2 View exemplar Basepair signature: cWW-cWW History status: Exact match	4	3
121	HL_29732.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	0	3
122	HL_77805.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	3
123	HL_96851.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	0	3
124	HL_16845.6 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	3
125	HL_22554.1 View exemplar Basepair signature: cWW-cWH-tWH-F-F-F History status: Exact match	0	2
126	HL_79531.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	2
127	HL_49722.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
128	HL_73778.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent	0	2
129	HL_07882.1 View exemplar Basepair signature: cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	2
130	HL_38592.1 View exemplar Basepair signature: cWW-cWW-F-F History status: New id, 1 parent	0	2
131	HL_55305.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	2
132	HL_93227.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	0	2
133	HL_04775.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	2
134	HL_08127.1 View exemplar Basepair signature: cWW History status: Exact match	0	2
135	HL_64163.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F History status: Exact match	0	2
136	HL_98870.1 View exemplar Basepair signature: cWW-tSH-tWW-F-F-F-F-F History status: Exact match	0	2
137	HL_05727.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	0	2
138	HL_39267.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match tRNA anticodon loop (1)	8	2
139	HL_90574.1 View exemplar Basepair signature: cWW-F History status: Exact match	0	2
140	HL_08510.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: Exact match	0	2
141	HL_45785.1 View exemplar Basepair signature: cWW-F-F-F-F-cSH-F-F History status: Exact match	0	2
142	HL_33817.1 View exemplar Basepair signature: cWW-cWW-tSW-F-F History status: Exact match	0	2
143	HL_52706.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	2
144	HL_72714.3 View exemplar Basepair signature: cWW-cWW-cWH-F-F-F-F-F History status: Exact match	0	2
145	HL_20146.1 View exemplar Basepair signature: cWW-tSH-F-F History status: Exact match	0	2
146	HL_90620.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: Exact match	0	2
147	HL_73183.1 View exemplar Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	14	2
148	HL_86343.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent	0	2
149	HL_09829.1 View exemplar Basepair signature: cWW-F History status: Exact match	0	2
150	HL_20751.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	0	2
151	HL_40310.1 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Exact match	0	2
152	HL_73255.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	0	2
153	HL_07518.1 View exemplar Basepair signature: cWW-tSH-F History status: Exact match Other HL (1)	0	2
154	HL_30239.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	0	2
155	HL_84288.1 View exemplar Basepair signature: cWW-tWH-tWH-F-F-F-F History status: Exact match	0	2
156	HL_07551.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	2
157	HL_60293.1 View exemplar Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F History status: Exact match	0	2
158	HL_97733.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	0	1
159	HL_16991.1 View exemplar Basepair signature: cWW-cWH-cWH-F-cWH-F History status: Exact match	0	1
160	HL_60592.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	0	1
161	HL_70228.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
162	HL_84847.1 View exemplar Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F History status: Exact match	0	1
163	HL_04355.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	0	1
164	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	0	1
165	HL_00317.1 View exemplar Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
166	HL_32255.1 View exemplar Basepair signature: cWW-tWW-F-F-cWW-F-F History status: Exact match	0	1
167	HL_70682.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match	0	1
168	HL_84861.1 View exemplar Basepair signature: cWW-F-cSH-F-F History status: Exact match	0	1
169	HL_98252.1 View exemplar Basepair signature: cWW-tWW-F-F-F-F History status: Exact match	0	1
170	HL_04641.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
171	HL_18495.1 View exemplar Basepair signature: cWW-cWW-cSH-F-F History status: Exact match	8	1
172	HL_60914.1 View exemplar Basepair signature: cWW-F History status: Exact match	0	1
173	HL_50318.1 View exemplar Basepair signature: cWW-cSH-F-F History status: Exact match	0	1
174	HL_19239.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	0	1
175	HL_56500.1 View exemplar Basepair signature: cWW-cWW-F-cSH-F-F History status: Exact match	0	1
176	HL_44294.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
177	HL_94032.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match	0	1
178	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
179	HL_32426.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
180	HL_76252.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F History status: Exact match	0	1
181	HL_81820.1 View exemplar Basepair signature: cWW-tSH-tHW-tHW-cSH-F History status: Exact match	11	1
182	HL_02483.1 View exemplar Basepair signature: cWW-tWH-F-cSH-F-F-F History status: Exact match	0	1
183	HL_56845.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
184	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	0	1
185	HL_02811.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	0	1
186	HL_39425.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-cSH History status: Exact match	11	1
187	HL_57204.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	0	1
188	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	0	1
189	HL_46771.1 View exemplar Basepair signature: cWW-tSS-F-F-F History status: Exact match	0	1
190	HL_35326.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
191	HL_59445.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
192	HL_16395.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	0	1
193	HL_35354.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: Exact match	0	1
194	HL_53189.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	0	1
195	HL_40442.1 View exemplar Basepair signature: cWW-tSW-cWW-cWS-cWW-F-F History status: Exact match	0	1
196	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
197	HL_35888.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1