RNA 3D Hub //

7BTB Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7BTB_0011/1/39:44No text annotation
Not in a motif group
HL_7BTB_0021/1/69:74No text annotation
Not in a motif group		homologous
HL_8C3A_002
HL_02862.2
HL_7BTB_0031/1/90:96No text annotation
Not in a motif group		geometric
HL_7A0S_007
HL_02862.2
HL_7BTB_0041/1/132:136No text annotation
Not in a motif group		homologous
HL_8C3A_004
HL_98426.1
HL_7BTB_0051/1/194:201No text annotation
Not in a motif group		homologous
HL_8C3A_005
HL_89380.2
HL_7BTB_0061/1/208:212No text annotation
Not in a motif group		homologous
HL_8C3A_006
HL_98984.2
HL_7BTB_0071/1/216:224No text annotation
Not in a motif group		homologous
HL_8C3A_007
HL_08002.8
HL_7BTB_0081/1/278:287No text annotation
Not in a motif group
HL_7BTB_0101/1/357:362No text annotation
Not in a motif group		homologous
HL_8C3A_010
HL_42097.1
HL_7BTB_0111/1/382:387No text annotation
Not in a motif group		homologous
HL_8C3A_011
HL_42097.1
HL_7BTB_0121/1/541:550No text annotation
Not in a motif group
HL_7BTB_0131/1/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_42097.1
HL_7BTB_0151/1/686:694No text annotation
Not in a motif group		homologous
HL_8C3A_015
HL_03345.1
HL_7BTB_0161/1/707:712No text annotation
Not in a motif group		homologous
HL_8C3A_016
HL_42097.1
HL_7BTB_0171/1/732:737GNRA
Not in a motif group		homologous
HL_5TBW_017
HL_42097.1
HL_7BTB_0221/1/958:963No text annotation
Not in a motif group		homologous
HL_8C3A_022
HL_96598.1
HL_7BTB_0251/1/1126:1132Other HL
Not in a motif group		geometric
HL_4V9F_039
HL_27930.1
HL_7BTB_0261/1/1148:1155No text annotation
Not in a motif group		homologous
HL_5TBW_026
HL_64430.2
HL_7BTB_0301/1/1403:1408No text annotation
Not in a motif group		homologous
HL_8C3A_030
HL_42097.1
HL_7BTB_0581/1/2840:2848No text annotation
Not in a motif group
HL_7BTB_0591/1/2897:2904No text annotation
Not in a motif group		homologous
HL_5TBW_062
HL_88526.2
HL_7BTB_0601/1/2920:2926No text annotation
Not in a motif group		geometric
HL_7A0S_017
HL_53837.1
HL_7BTB_0621/1/3025:3030GNRA
Not in a motif group		homologous
HL_5TBW_065
HL_42097.1
HL_7BTB_0631/1/3068:3073No text annotation
Not in a motif group		homologous
HL_8C3A_067
HL_46680.1
HL_7BTB_0641/1/3110:3124No text annotation
Not in a motif group		homologous
HL_8C3A_068
HL_56677.7
HL_7BTB_0651/1/3194:3197No text annotation
Not in a motif group		geometric
HL_5TBW_068
HL_98426.1
HL_7BTB_0661/1/3240:3247No text annotation
Not in a motif group		homologous
HL_5TBW_069
HL_14449.2
HL_7BTB_0671/1/3303:3311No text annotation
Not in a motif group		geometric
HL_5TBW_070
HL_27930.1
HL_7BTB_0701/2/108:114No text annotation
Not in a motif group		homologous
HL_5TBW_075
HL_87939.1
HL_7BTB_0711/2/124:129No text annotation
Not in a motif group		homologous
HL_5TBW_076
HL_96851.2
HL_7BTB_0721/3/36:41No text annotation
Not in a motif group		homologous
HL_5J7L_203
HL_87939.1
HL_7BTB_0741/6/11:17No text annotation
Not in a motif group		geometric
HL_1WZ2_007
HL_10278.1
HL_7BTB_0751/6/36:43No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
HL_7BTB_009No text annotation
HL_7BTB_014No text annotation
HL_7BTB_018No text annotation
HL_7BTB_019No text annotation
HL_7BTB_020No text annotation
HL_7BTB_021No text annotation
HL_7BTB_023No text annotation
HL_7BTB_024No text annotation
HL_7BTB_027No text annotation
HL_7BTB_028No text annotation
HL_7BTB_029No text annotation
HL_7BTB_031T-loop with 2 stacked bulged bases
HL_7BTB_032No text annotation
HL_7BTB_033No text annotation
HL_7BTB_034No text annotation
HL_7BTB_035No text annotation
HL_7BTB_036No text annotation
HL_7BTB_037No text annotation
HL_7BTB_038No text annotation
HL_7BTB_039No text annotation
HL_7BTB_040No text annotation
HL_7BTB_041No text annotation
HL_7BTB_042GNRA with one bulged base
HL_7BTB_043UNCG
HL_7BTB_044No text annotation
HL_7BTB_045No text annotation
HL_7BTB_046No text annotation
HL_7BTB_047No text annotation
HL_7BTB_048No text annotation
HL_7BTB_049No text annotation
HL_7BTB_050No text annotation
HL_7BTB_051No text annotation
HL_7BTB_052No text annotation
HL_7BTB_053No text annotation
HL_7BTB_054No text annotation
HL_7BTB_055No text annotation
HL_7BTB_056No text annotation
HL_7BTB_057No text annotation
HL_7BTB_061GNRA
HL_7BTB_068No text annotation
HL_7BTB_069No text annotation
HL_7BTB_073No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7BTB_0011/1/7:8,
1/2/150:152		No text annotation
Not in a motif group		homologous
IL_8C3A_002
IL_61258.12
IL_7BTB_0021/1/13:15,
1/2/144:145		No text annotation
Not in a motif group		homologous
IL_8C3A_003
IL_83039.13
IL_7BTB_0031/1/27:28,
1/1/56:58		No text annotation
Not in a motif group		homologous
IL_8C3A_004
IL_76488.2
IL_7BTB_0041/1/31:38,
1/1/45:53		tSH-tHW-tHH-tHS
Not in a motif group		homologous
IL_5TBW_005
IL_35728.2
IL_7BTB_0051/1/82:89,
1/1/97:103		No text annotation
Not in a motif group		homologous
IL_8C3A_006
IL_88613.1
IL_7BTB_0061/1/123:124,
1/1/144:149		No text annotation
Not in a motif group		homologous
IL_8C3A_007
IL_19724.2
IL_7BTB_0071/1/125:127,
1/1/141:143		No text annotation
Not in a motif group		homologous
IL_8C3A_008
IL_95997.1
IL_7BTB_0081/1/163:166,
1/1/256:258		Other IL
Not in a motif group		geometric
IL_5TBW_064
IL_84698.1
IL_7BTB_0091/1/169:170,
1/1/248:253		No text annotation
Not in a motif group		homologous
IL_5TBW_010
IL_74684.1
IL_7BTB_0101/1/177:178,
1/1/238:241		Minor groove platform
Not in a motif group		geometric
IL_4KQY_004
IL_95601.3
IL_7BTB_0111/1/189:191,
1/1/204:205		No text annotation
Not in a motif group		homologous
IL_8C3A_013
IL_83039.13
IL_7BTB_0121/1/272:274,
1/1/291:293		No text annotation
Not in a motif group		geometric
IL_4YHW_001
IL_95997.1
IL_7BTB_0131/1/337:339,
1/2/25:26		Single bulged A
Not in a motif group		homologous
IL_5TBW_013
IL_37497.2
IL_7BTB_0141/1/376:379,
1/1/390:403		No text annotation
Not in a motif group		geometric
IL_5TBW_014
IL_60992.6
IL_7BTB_0151/1/404:410,
1/2/13:19		Triple sheared with non-canonical cWW
Not in a motif group		homologous
IL_5TBW_015
IL_66414.6
IL_7BTB_0161/1/429:431,
1/1/628:630		No text annotation
Not in a motif group		homologous
IL_5TBW_016
IL_51629.2
IL_7BTB_0181/1/512:513,
1/1/577:579		No text annotation
Not in a motif group		homologous
IL_8C3A_020
IL_37497.2
IL_7BTB_0191/1/517:525,
1/1/567:573		No text annotation
Not in a motif group		homologous
IL_5TBW_019
IL_23992.1
IL_7BTB_0201/1/531:538,
1/1/553:561		No text annotation
Not in a motif group		homologous
IL_5TBW_020
IL_07703.1
IL_7BTB_0211/1/668:670,
1/1/792:794		No text annotation
Not in a motif group		homologous
IL_8C3A_023
IL_95997.1
IL_7BTB_0221/1/680:684,
1/1/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_74284.1
IL_7BTB_0231/1/725:728,
1/1/741:745		No text annotation
Not in a motif group		homologous
IL_8C3A_025
IL_07235.1
IL_7BTB_0241/1/752:753,
1/1/779:781		Single bulged A
Not in a motif group		homologous
IL_5TBW_024
IL_37497.2
IL_7BTB_0251/1/755:757,
1/1/774:777		No text annotation
Not in a motif group		geometric
IL_4N0T_004
IL_46796.1
IL_7BTB_0271/1/803:805,
1/1/938:940		No text annotation
Not in a motif group		homologous
IL_8C3A_029
IL_95997.1
IL_7BTB_0281/1/805:809,
1/1/931:938		No text annotation
Not in a motif group
IL_7BTB_0341/1/983:985,
1/1/1099:1100		No text annotation
Not in a motif group		homologous
IL_8C3A_040
IL_00225.2
IL_7BTB_0371/1/1120:1122,
1/1/1136:1138		No text annotation
Not in a motif group		homologous
IL_8C3A_049
IL_95997.1
IL_7BTB_0381/1/1167:1171,
1/1/1328:1332		No text annotation
Not in a motif group		homologous
IL_8C3A_051
IL_89002.2
IL_7BTB_0391/1/1173:1180,
1/1/1325:1326		SSU/LSU pseudoknot
Not in a motif group		geometric
IL_5TBW_049
IL_15861.7
IL_7BTB_0401/1/1180:1182,
1/1/1324:1325		Single bulged U
Not in a motif group		homologous
IL_5TBW_050
IL_83039.13
IL_7BTB_0411/1/1186:1194,
1/1/1314:1320		No text annotation
Not in a motif group
IL_7BTB_0421/1/1194:1206,
1/1/1298:1314		No text annotation
Not in a motif group
IL_7BTB_0431/1/1207:1209,
1/1/1296:1297		Single bulged U
Not in a motif group		homologous
IL_5TBW_053
IL_83039.13
IL_7BTB_0441/1/1218:1226,
1/1/1283:1287		Kink-turn
Not in a motif group		homologous
IL_5TBW_054
IL_90538.4
IL_7BTB_0471/1/1376:1378,
1/1/1428:1431		No text annotation
Not in a motif group		homologous
IL_8C3A_061
IL_52767.2
IL_7BTB_0481/1/1385:1387,
1/1/1420:1421		No text annotation
Not in a motif group		homologous
IL_8C3A_062
IL_37497.2
IL_7BTB_0491/1/1388:1395,
1/1/1415:1419		Kink-turn
Not in a motif group		homologous
IL_5TBW_059
IL_70923.2
IL_7BTB_0501/1/1398:1400,
1/1/1411:1412		Single bulged A
Not in a motif group		homologous
IL_5TBW_060
IL_37497.2
IL_7BTB_0511/1/1444:1450,
1/1/2354:2359		7x6 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_061
IL_76042.2
IL_7BTB_0761/1/2391:2394,
1/1/2986:2988		Major groove platform with extra pair
Not in a motif group		homologous
IL_5TBW_091
IL_63450.2
IL_7BTB_0891/1/2835:2839,
1/1/2849:2853		No text annotation
Not in a motif group		homologous
IL_8C3A_114
NA
IL_7BTB_0901/1/2879:2881,
1/1/2943:2947		No text annotation
Not in a motif group		homologous
IL_8C3A_116
IL_90933.2
IL_7BTB_0911/1/2889:2891,
1/1/2912:2914		No text annotation
Not in a motif group		geometric
IL_5TBW_110
IL_51629.2
IL_7BTB_0921/1/2891:2892,
1/1/2909:2912		Minor groove platform with intercalation
Not in a motif group		geometric
IL_4V9F_089
IL_95601.3
IL_7BTB_0931/1/2918:2920,
1/1/2926:2928		Isolated cWH basepair
Not in a motif group		geometric
IL_5F5F_003
IL_51629.2
IL_7BTB_0951/1/3004:3007,
1/1/3139:3144		Double sheared
Not in a motif group		homologous
IL_5TBW_114
IL_09705.9
IL_7BTB_0961/1/3012:3014,
1/1/3040:3042		No text annotation
Not in a motif group		homologous
IL_5TBW_115
IL_95997.1
IL_7BTB_0971/1/3018:3025,
1/1/3030:3036		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		geometric
IL_5TBW_116
IL_04346.7
IL_7BTB_0981/1/3047:3051,
1/1/3091:3094		Major groove minor groove platform with tHH
Not in a motif group		homologous
IL_5TBW_117
IL_37712.2
IL_7BTB_0991/1/3054:3059,
1/1/3084:3088		No text annotation
Not in a motif group		homologous
IL_8C3A_127
IL_17136.1
IL_7BTB_1001/1/3063:3064,
1/1/3077:3080		No text annotation
Not in a motif group		homologous
IL_8C3A_128
IL_71530.2
IL_7BTB_1011/1/3103:3107,
1/1/3127:3131		No text annotation
Not in a motif group		homologous
IL_8C3A_129
IL_89002.2
IL_7BTB_1021/1/3164:3166,
1/1/3284:3286		No text annotation
Not in a motif group		homologous
IL_8C3A_130
IL_95997.1
IL_7BTB_1031/1/3177:3179,
1/1/3210:3211		Single bulged A
Not in a motif group		homologous
IL_5TBW_123
IL_37497.2
IL_7BTB_1041/1/3179:3188,
1/1/3204:3210		No text annotation
Not in a motif group		geometric
IL_5TBW_124
IL_15174.1
IL_7BTB_1051/1/3193:3194,
1/1/3197:3199		Single bulged U
Not in a motif group		homologous
IL_5TBW_125
IL_83039.13
IL_7BTB_1061/1/3225:3230,
1/1/3257:3260		No text annotation
Not in a motif group
IL_7BTB_1071/1/3233:3235,
1/1/3252:3254		No text annotation
Not in a motif group		homologous
IL_5TBW_127
IL_95997.1
IL_7BTB_1081/1/3235:3238,
1/1/3249:3252		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_6MWN_005
IL_30621.2
IL_7BTB_1091/1/3300:3303,
1/1/3311:3314		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_5TBW_129
IL_30621.2
IL_7BTB_1101/1/3318:3320,
1/1/3387:3388		Single bulged U
Not in a motif group		geometric
IL_5TBW_130
IL_83039.13
IL_7BTB_1111/1/3324:3325,
1/1/3381:3383		Single bulged U
Not in a motif group		homologous
IL_5TBW_131
IL_83039.13
IL_7BTB_1121/1/3328:3330,
1/1/3373:3378		No text annotation
Not in a motif group		homologous
IL_8C3A_138
IL_90933.2
IL_7BTB_1131/1/3332:3337,
1/1/3367:3371		No text annotation
Not in a motif group		homologous
IL_5TBW_133
IL_83162.5
IL_7BTB_1141/1/3340:3342,
1/1/3363:3364		No text annotation
Not in a motif group
IL_7BTB_1151/1/3342:3345,
1/1/3360:3363		No text annotation
Not in a motif group		homologous
IL_8C3A_141
IL_09705.9
IL_7BTB_1161/1/3349:3350,
1/1/3353:3356		No text annotation
Not in a motif group		homologous
IL_8C3A_142
IL_59677.2
IL_7BTB_1171/2/44:64,
1/2/96:100		No text annotation
Not in a motif group		geometric
IL_5TBW_144
IL_44998.1
IL_7BTB_1181/2/64:67,
1/2/92:96		No text annotation
Not in a motif group
IL_7BTB_1191/2/68:69,
1/2/89:91		Single bulged U
Not in a motif group		homologous
IL_5TBW_146
IL_83039.13
IL_7BTB_1201/3/15:16,
1/3/63:65		Single bulged A
Not in a motif group		homologous
IL_5TBW_372
IL_37497.2
IL_7BTB_1211/3/21:30,
1/3/47:58		No text annotation
Not in a motif group
IL_7BTB_1221/3/32:36,
1/3/41:45		Symmetric double minor groove platform
Not in a motif group		geometric
IL_5TBW_376
IL_58103.6
IL_7BTB_1231/3/72:80,
1/3/100:106		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_377
IL_04346.7
IL_7BTB_1241/3/84:87,
1/3/94:96		No text annotation
Not in a motif group		homologous
IL_8C3A_149
IL_95997.1
IL_7BTB_1251/3/87:89,
1/3/93:94		Single stack bend
Not in a motif group		geometric
IL_4V9F_081
IL_76488.2
IL_7BTB_1261/6/26:27,
1/6/51:54		Multiple bulged bases
Not in a motif group		geometric
IL_4V88_392
IL_44546.1
IL_7BTB_1271/6/30:34,
1/6/45:48		No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
IL_7BTB_017No text annotation
IL_7BTB_026No text annotation
IL_7BTB_029No text annotation
IL_7BTB_030Triple sheared
IL_7BTB_031No text annotation
IL_7BTB_032Single bulged U
IL_7BTB_033Multiple bulged bases
IL_7BTB_035No text annotation
IL_7BTB_036Tandem non-canonical cWW pairs
IL_7BTB_045No text annotation
IL_7BTB_046No text annotation
IL_7BTB_052No text annotation
IL_7BTB_053No text annotation
IL_7BTB_054No text annotation
IL_7BTB_055No text annotation
IL_7BTB_056No text annotation
IL_7BTB_057Triple sheared
IL_7BTB_058No text annotation
IL_7BTB_059No text annotation
IL_7BTB_060Single stack bend
IL_7BTB_061No text annotation
IL_7BTB_062No text annotation
IL_7BTB_063Kink-turn
IL_7BTB_064No text annotation
IL_7BTB_065No text annotation
IL_7BTB_066No text annotation
IL_7BTB_067Intercalated tWH
IL_7BTB_068No text annotation
IL_7BTB_069No text annotation
IL_7BTB_070No text annotation
IL_7BTB_071Single stack bend
IL_7BTB_072No text annotation
IL_7BTB_073Kink-turn related
IL_7BTB_074No text annotation
IL_7BTB_075No text annotation
IL_7BTB_077No text annotation
IL_7BTB_078No text annotation
IL_7BTB_079No text annotation
IL_7BTB_080No text annotation
IL_7BTB_081No text annotation
IL_7BTB_082No text annotation
IL_7BTB_083No text annotation
IL_7BTB_084No text annotation
IL_7BTB_085No text annotation
IL_7BTB_086No text annotation
IL_7BTB_087Single stack bend
IL_7BTB_088No text annotation
IL_7BTB_094No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7BTB_0011/1/113:123,
1/1/149:158,
1/1/263:267		No text annotation
Not in a motif group
J3_7BTB_0021/1/369:376,
1/1/403:404,
1/2/19:20		No text annotation
Not in a motif group		homologous
J3_5TBW_002
NA
J3_7BTB_0031/1/502:503,
1/1/588:597,
1/1/606:611		No text annotation
Not in a motif group		homologous
J3_5TBW_003
NA
J3_7BTB_0121/1/2886:2889,
1/1/2914:2916,
1/1/2930:2936		No text annotation
Not in a motif group		homologous
J3_8C3A_011
NA
J3_7BTB_0131/1/3298:3300,
1/1/3314:3318,
1/1/3388:3390		No text annotation
Not in a motif group		homologous
J3_5TBW_015
NA
J3_7BTB_0141/3/9:14,
1/3/66:67,
1/3/111:112		No text annotation
Not in a motif group		homologous
J3_5TBW_045
NA

Problematic loops

#loop idProblemSequence
J3_7BTB_004No text annotation
J3_7BTB_005No text annotation
J3_7BTB_006No text annotation
J3_7BTB_007No text annotation
J3_7BTB_008No text annotation
J3_7BTB_009No text annotation
J3_7BTB_010No text annotation
J3_7BTB_011No text annotation

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