RNA 3D Hub //

7PJS Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7PJS_0011/A/59:68No text annotation
homologous
HL_5J7L_134
HL_35677.3
HL_7PJS_0021/A/87:95No text annotation
homologous
HL_5J7L_135
HL_80241.1
HL_7PJS_0031/A/123:128No text annotation
homologous
HL_5J7L_136
HL_82710.2
HL_7PJS_0041/A/137:142UNCG variation
geometric
HL_2CZJ_007
NA
HL_7PJS_0051/A/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_7PJS_0061/A/194:201No text annotation
geometric
HL_4WF9_006
HL_30068.2
HL_7PJS_0071/A/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_7PJS_0081/A/246:252No text annotation
homologous
HL_5J7L_141
HL_37369.2
HL_7PJS_0091/A/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
HL_01609.3
HL_7PJS_0101/A/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_7PJS_0111/A/382:392No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_7PJS_0121/A/410:417Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.3
HL_7PJS_0131/A/462:467GNRA
homologous
HL_7RQB_015
NA
HL_7PJS_0141/A/487:493GNRA
homologous
HL_5J7L_148
HL_37824.7
HL_7PJS_0851/A/545:548No text annotation
geometric
HL_4V88_198
NA
HL_7PJS_0161/A/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
HL_28252.8
HL_7PJS_0171/A/611:617GNRA
geometric
HL_3DIL_003
HL_30068.2
HL_7PJS_0181/A/629:634GNRA
homologous
HL_5J7L_152
HL_37824.7
HL_7PJS_0191/A/641:647No text annotation
homologous
HL_5J7L_153
HL_13529.1
HL_7PJS_0201/A/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
HL_81538.2
HL_7PJS_0211/A/744:753No text annotation
homologous
HL_5J7L_155
HL_88205.2
HL_7PJS_0221/A/779:785No text annotation
homologous
HL_7A0S_023
HL_53890.2
HL_7PJS_0231/A/826:831No text annotation
homologous
HL_5J7L_157
HL_55195.3
HL_7PJS_0241/A/885:891No text annotation
geometric
HL_7Z42_002
HL_49922.4
HL_7PJS_0861/A/955:962GNRA
homologous
HL_5J7L_211
HL_37824.7
HL_7PJS_0261/A/978:985No text annotation
homologous
HL_5J7L_160
HL_42998.2
HL_7PJS_0271/A/1062:1076No text annotation
HL_7PJS_0281/A/1092:1099No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_7PJS_0291/A/1169:1180No text annotation
HL_7PJS_0301/A/1222:1227GNRA
homologous
HL_5J7L_164
HL_37824.7
HL_7PJS_0311/A/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.8
HL_7PJS_0321/A/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_7PJS_0331/A/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_7PJS_0341/A/1389:1398No text annotation
homologous
HL_5J7L_168
HL_81545.2
HL_7PJS_0351/A/1451:1459Mini UNCG with extended bulge
homologous
HL_5J7L_169
HL_22622.1
HL_7PJS_0361/A/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_7PJS_0871/A/1531:1540No text annotation
HL_7PJS_0371/A/1533:1538No text annotation
HL_7PJS_0381/A/1565:1568No text annotation
homologous
HL_7RQB_039
NA
HL_7PJS_0391/A/1612:1619No text annotation
homologous
HL_5J7L_173
HL_89567.2
HL_7PJS_0401/A/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.7
HL_7PJS_0411/A/1691:1696No text annotation
geometric
HL_7RQB_042
NA
HL_7PJS_0421/A/1728:1731No text annotation
geometric
HL_6U8D_003
HL_32346.4
HL_7PJS_0431/A/1752:1756No text annotation
homologous
HL_5J7L_177
HL_80709.3
HL_7PJS_0441/A/1777:1787No text annotation
homologous
HL_5J7L_178
HL_01962.2
HL_7PJS_0451/A/1806:1811GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_7PJS_0461/A/1868:1873GNRA
geometric
HL_4QLM_001
HL_37824.7
HL_7PJS_0471/A/1909:1921No text annotation
HL_7PJS_0481/A/1949:1957No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_7PJS_0491/A/2027:2036No text annotation
homologous
HL_5J7L_183
HL_61996.2
HL_7PJS_0881/A/2124:2174No text annotation
HL_7PJS_0501/A/2140:2151No text annotation
HL_7PJS_0511/A/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_7PJS_0521/A/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_7PJS_0531/A/2264:2276No text annotation
homologous
HL_5J7L_187
HL_91939.2
HL_7PJS_0911/A/2304:2312No text annotation
homologous
HL_9DFE_198
HL_50860.2
HL_7PJS_0551/A/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
HL_93324.4
HL_7PJS_0561/A/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.7
HL_7PJS_0571/A/2374:2379GNRA
homologous
HL_7RQB_058
NA
HL_7PJS_0581/A/2404:2413No text annotation
homologous
HL_5J7L_192
HL_53454.2
HL_7PJS_0591/A/2471:2479No text annotation
homologous
HL_4WF9_056
HL_32735.2
HL_7PJS_0601/A/2528:2535No text annotation
homologous
HL_5J7L_194
HL_31585.4
HL_7PJS_0611/A/2551:2557No text annotation
homologous
HL_5J7L_195
HL_30068.2
HL_7PJS_0621/A/2594:2599GNRA
homologous
HL_5J7L_196
HL_37824.7
HL_7PJS_0631/A/2658:2663GNRA
homologous
HL_7A0S_063
HL_37824.7
HL_7PJS_0641/A/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_7PJS_0651/A/2745:2759No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_7PJS_0661/A/2796:2799No text annotation
geometric
HL_5TBW_068
NA
HL_7PJS_0671/A/2819:2827No text annotation
homologous
HL_5J7L_201
HL_64690.6
HL_7PJS_0681/A/2856:2861GNRA
homologous
HL_7A0S_068
HL_37824.7
HL_7PJS_0891/B/34:48No text annotation
homologous
HL_5J7L_215
HL_97756.2
HL_7PJS_0691/B/38:44No text annotation
homologous
HL_5J7L_203
HL_47787.2
HL_7PJS_0701/B/86:90Mini UNCG
homologous
HL_5J7L_204
HL_48778.2
HL_7PJS_0711/a/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_7PJS_0921/a/79:90No text annotation
HL_7PJS_0731/a/158:163GNRA
homologous
HL_5J7L_003
HL_37824.7
HL_7PJS_0741/a/186:191GNRA
homologous
HL_5J7L_004
HL_37824.7
HL_7PJS_0751/a/207:212No text annotation
HL_7PJS_0761/a/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_7PJS_0771/a/296:301GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_7PJS_0781/a/320:333No text annotation
homologous
HL_5J7L_008
HL_81205.3
HL_7PJS_0791/a/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_7PJS_0801/a/379:384GNRA
homologous
HL_5J7L_010
HL_37824.7
HL_7PJS_0811/a/419:424UNCG
homologous
HL_4LFB_011
HL_34617.5
HL_7PJS_0821/a/462:470GNRA related
homologous
HL_5J7L_012
HL_81538.2
HL_7PJS_0901/a/522:527GNRA variation
homologous
HL_5J7L_205
HL_37824.7
HL_7PJS_0841/a/617:623No text annotation
homologous
HL_4LFB_014
HL_10453.3

Problematic loops

#loop idProblemSequence
HL_7PJS_015UNCG variation
HL_7PJS_025No text annotation
HL_7PJS_054No text annotation
HL_7PJS_072No text annotation
HL_7PJS_083No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7PJS_0011/A/24:30,
1/A/510:516		Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
IL_04021.2
IL_7PJS_0021/A/36:37,
1/A/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_7PJS_0031/A/43:44,
1/A/434:436		Minor groove platform
homologous
IL_5J7L_247
IL_51454.3
IL_7PJS_0041/A/81:85,
1/A/97:105		No text annotation
homologous
IL_5J7L_248
IL_37015.1
IL_7PJS_0051/A/183:184,
1/A/212:214		Single stack bend
homologous
IL_4WF9_007
IL_90729.1
IL_7PJS_0061/A/188:194,
1/A/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA
IL_7PJS_0071/A/239:245,
1/A/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_7PJS_0081/A/269:271,
1/A/366:370		No text annotation
homologous
IL_5J7L_252
IL_47972.1
IL_7PJS_0091/A/274:281,
1/A/359:363		No text annotation
homologous
IL_5J7L_253
IL_77870.1
IL_7PJS_0101/A/293:295,
1/A/343:347		No text annotation
homologous
IL_5J7L_254
IL_69440.3
IL_7PJS_0111/A/481:484,
1/A/496:509		No text annotation
geometric
IL_5J7L_255
IL_81516.2
IL_7PJS_0121/A/536:539,
1/A/554:557		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_7PJS_0131/A/564:566,
1/A/575:577		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
IL_07785.1
IL_7PJS_0141/A/606:610,
1/A/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_7PJS_0151/A/672:674,
1/A/806:808		No text annotation
homologous
IL_7RQB_017
NA
IL_7PJS_0161/A/674:678,
1/A/799:806		tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_7PJS_0171/A/697:698,
1/A/763:765		Single bulged A
homologous
IL_5J7L_261
IL_31462.6
IL_7PJS_0181/A/702:703,
1/A/728:730		Single bulged G
homologous
IL_5J7L_262
IL_00225.13
IL_7PJS_0191/A/703:707,
1/A/724:728		Triple sheared
geometric
IL_5J7L_263
IL_50730.2
IL_7PJS_0201/A/738:740,
1/A/757:758		Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_7PJS_0211/A/775:777,
1/A/787:791		Multiple bulged bases
geometric
IL_5J7L_265
IL_06549.2
IL_7PJS_0221/A/844:847,
1/A/933:934		Other IL
geometric
IL_5J7L_267
IL_90729.1
IL_7PJS_1411/A/844:848,
1/A/930:934		No text annotation
homologous
IL_5J7L_399
IL_96236.1
IL_7PJS_0231/A/847:848,
1/A/930:933		Stack outside cWW
homologous
IL_5J7L_268
IL_56987.1
IL_7PJS_0241/A/849:851,
1/A/926:929		No text annotation
geometric
IL_4P3T_002
NA
IL_7PJS_0251/A/856:862,
1/A/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
IL_29198.2
IL_7PJS_0261/A/862:863,
1/A/913:915		Single bulged G
geometric
IL_5J7L_271
IL_00225.13
IL_7PJS_0271/A/864:868,
1/A/909:912		C-loop
homologous
IL_5J7L_272
IL_26222.2
IL_7PJS_0281/A/870:872,
1/A/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_7PJS_0291/A/875:879,
1/A/898:902		Triple sheared
homologous
IL_5J7L_274
IL_17948.2
IL_7PJS_0301/A/880:881,
1/A/895:897		Single bulged A
homologous
IL_7RQB_033
NA
IL_7PJS_0311/A/994:996,
1/A/1159:1160		Single bulged C
homologous
IL_5J7L_276
IL_61258.15
IL_7PJS_0321/A/998:1002,
1/A/1153:1157		UAA/GAN
homologous
IL_5J7L_277
IL_38507.2
IL_7PJS_0331/A/1004:1011,
1/A/1150:1151		SSU/LSU pseudoknot
homologous
IL_5J7L_278
IL_41203.4
IL_7PJS_0341/A/1011:1013,
1/A/1149:1150		Single bulged U
geometric
IL_5J7L_279
IL_89505.4
IL_7PJS_0351/A/1018:1024,
1/A/1140:1144		Kink-turn related
geometric
IL_5J7L_280
IL_57188.5
IL_7PJS_0361/A/1024:1030,
1/A/1124:1140		No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_7PJS_0371/A/1031:1034,
1/A/1121:1123		Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_7PJS_0381/A/1038:1041,
1/A/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_7PJS_0391/A/1043:1051,
1/A/1108:1112		Kink-turn
homologous
IL_5J7L_284
IL_99692.2
IL_7PJS_0401/A/1196:1198,
1/A/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
IL_42997.3
IL_7PJS_0411/A/1202:1206,
1/A/1240:1243		No text annotation
homologous
IL_5J7L_287
IL_91920.1
IL_7PJS_0421/A/1208:1215,
1/A/1234:1238		Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_7PJS_0431/A/1262:1269,
1/A/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_7PJS_0441/A/1310:1313,
1/A/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_7PJS_0451/A/1319:1323,
1/A/1331:1333		C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_7PJS_0461/A/1351:1355,
1/A/1376:1380		UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_7PJS_0471/A/1357:1361,
1/A/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_7PJS_0481/A/1415:1416,
1/A/1582:1587		No text annotation
homologous
IL_5J7L_294
IL_87211.1
IL_7PJS_0491/A/1417:1421,
1/A/1577:1581		UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_7PJS_0501/A/1432:1435,
1/A/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_7PJS_0511/A/1437:1440,
1/A/1551:1555		tSH-tHW
homologous
IL_5J7L_297
IL_99646.2
IL_7PJS_0521/A/1450:1451,
1/A/1459:1461		Single bulged U
geometric
IL_5J7L_298
IL_89505.4
IL_7PJS_0531/A/1468:1471,
1/A/1520:1524		No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_7PJS_0541/A/1474:1478,
1/A/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
IL_38862.4
IL_7PJS_0551/A/1481:1482,
1/A/1507:1510		180 degree turn
homologous
IL_5J7L_301
IL_00881.1
IL_7PJS_0561/A/1489:1491,
1/A/1499:1500		Single bulged A
homologous
IL_5J7L_302
IL_31462.6
IL_7PJS_0571/A/1526:1529,
1/A/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_7PJS_0581/A/1651:1656,
1/A/2004:2006		No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_7PJS_0591/A/1663:1665,
1/A/1995:1997		Isolated tWW turn
homologous
IL_4WF9_063
IL_67095.2
IL_7PJS_0601/A/1666:1669,
1/A/1993:1994		Major groove platform; stack outside cWW
geometric
IL_5J7L_306
IL_50694.7
IL_7PJS_1421/A/1666:1674,
1/A/1990:1994		No text annotation
homologous
IL_5J7L_386
IL_22854.4
IL_7PJS_0611/A/1669:1674,
1/A/1990:1993		Intercalated tWH
homologous
IL_5J7L_307
IL_76758.2
IL_7PJS_0621/A/1686:1691,
1/A/1696:1702		tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
IL_47346.2
IL_7PJS_0631/A/1712:1718,
1/A/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_7PJS_0641/A/1720:1724,
1/A/1736:1740		Triple sheared
homologous
IL_5J7L_310
IL_50730.2
IL_7PJS_0651/A/1727:1728,
1/A/1731:1733		Single bulged C
homologous
IL_5J7L_311
IL_61258.15
IL_7PJS_0661/A/1770:1771,
1/A/1980:1982		Single bulged A
homologous
IL_5J7L_312
IL_31462.6
IL_7PJS_0671/A/1798:1804,
1/A/1813:1821		Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_7PJS_0681/A/1837:1840,
1/A/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_7PJS_0691/A/1841:1842,
1/A/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.4
IL_7PJS_0701/A/1846:1849,
1/A/1893:1894		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
IL_68140.4
IL_7PJS_1431/A/1851:1860,
1/A/1882:1891		No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_7PJS_0711/A/1864:1867,
1/A/1874:1878		UAA/GAN variation
homologous
IL_5J7L_317
IL_77691.5
IL_7PJS_0721/A/1933:1934,
1/A/1964:1967		Bulged stacked bases
homologous
IL_5J7L_318
IL_22551.4
IL_7PJS_0731/A/1934:1945,
1/A/1961:1964		No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_7PJS_0741/A/2050:2052,
1/A/2617:2618		Major groove platform
homologous
IL_5J7L_320
IL_48076.6
IL_7PJS_0751/A/2054:2056,
1/A/2612:2615		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_7PJS_1441/A/2067:2069,
1/A/2442:2443		Single bulged U
homologous
IL_7A0S_075
IL_89505.4
IL_7PJS_0781/A/2070:2071,
1/A/2438:2441		Minor groove platform
geometric
IL_5TBW_094
NA
IL_7PJS_0791/A/2081:2083,
1/A/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_7PJS_0801/A/2085:2087,
1/A/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_7PJS_0811/A/2100:2106,
1/A/2184:2189		No text annotation
IL_7PJS_0821/A/2106:2120,
1/A/2178:2184		No text annotation
IL_7PJS_0831/A/2202:2204,
1/A/2220:2221		Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_7PJS_0841/A/2350:2353,
1/A/2364:2367		Double sheared
homologous
IL_5J7L_333
IL_09705.15
IL_7PJS_0851/A/2401:2403,
1/A/2414:2415		Single bulged U
homologous
IL_4WF9_088
IL_89505.4
IL_7PJS_1461/A/2453:2454,
1/A/2498:2500		Single stack bend
homologous
IL_5J7L_391
IL_26793.1
IL_7PJS_1471/A/2454:2455,
1/A/2496:2498		Major groove platform
homologous
IL_9DFE_092
IL_48076.6
IL_7PJS_1481/A/2457:2459,
1/A/2493:2494		Major groove platform
homologous
IL_5J7L_393
IL_07039.3
IL_7PJS_0881/A/2459:2461,
1/A/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_5J7L_337
IL_51387.2
IL_7PJS_0891/A/2466:2470,
1/A/2480:2484		Triple sheared
homologous
IL_5J7L_338
IL_17948.2
IL_7PJS_1491/A/2507:2508,
1/A/2580:2582		Major groove platform
homologous
IL_5J7L_394
IL_07039.3
IL_7PJS_0911/A/2510:2512,
1/A/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_5J7L_340
IL_07785.1
IL_7PJS_0921/A/2512:2513,
1/A/2571:2574		No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_7PJS_0931/A/2522:2523,
1/A/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_7PJS_0951/A/2591:2592,
1/A/2601:2603		Single bulged A
geometric
IL_1U9S_001
IL_31462.6
IL_7PJS_0961/A/2636:2640,
1/A/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_7PJS_0971/A/2652:2658,
1/A/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_5J7L_346
IL_16458.4
IL_7PJS_0981/A/2680:2684,
1/A/2725:2727		C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_7PJS_0991/A/2687:2691,
1/A/2718:2722		No text annotation
homologous
IL_5J7L_348
IL_23774.1
IL_7PJS_1001/A/2695:2696,
1/A/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_7PJS_1011/A/2737:2742,
1/A/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_7PJS_1021/A/2795:2796,
1/A/2799:2801		Single bulged A
geometric
IL_4WF9_022
IL_31462.6
IL_7PJS_1031/A/2806:2811,
1/A/2889:2892		No text annotation
homologous
IL_5J7L_351
IL_29471.1
IL_7PJS_1041/A/2838:2839,
1/A/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_7PJS_1051/A/2843:2846,
1/A/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_7PJS_1061/A/2847:2852,
1/A/2865:2869		tHS double platform
homologous
IL_5J7L_354
IL_70411.2
IL_7PJS_1071/B/17:18,
1/B/65:67		Major groove intercalation
homologous
IL_5J7L_355
IL_31462.6
IL_7PJS_1081/B/23:28,
1/B/56:60		No text annotation
homologous
IL_5J7L_356
IL_18472.4
IL_7PJS_1091/B/30:31,
1/B/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_357
IL_68140.4
IL_7PJS_1101/B/34:38,
1/B/44:48		Symmetric double minor groove platform
geometric
IL_5J7L_358
IL_58103.11
IL_7PJS_1111/B/71:79,
1/B/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
IL_56455.6
IL_7PJS_1121/a/30:32,
1/a/552:553		Single bulged G
homologous
IL_5J7L_001
IL_00225.13
IL_7PJS_1131/a/44:45,
1/a/396:398		Single bulged A
homologous
IL_5J7L_002
IL_31462.6
IL_7PJS_1141/a/47:52,
1/a/359:361		No text annotation
geometric
IL_5J7L_003
IL_14177.2
IL_7PJS_1151/a/54:56,
1/a/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_51454.3
IL_7PJS_1161/a/63:66,
1/a/103:104		Multiple bulged bases
homologous
IL_5J7L_005
IL_82107.4
IL_7PJS_1171/a/67:69,
1/a/99:102		Minor groove platform with extra cWW
homologous
IL_5J7L_006
IL_90351.1
IL_7PJS_1181/a/70:73,
1/a/97:98		Minor groove platform
homologous
IL_5J7L_007
IL_15052.4
IL_7PJS_1501/a/75:76,
1/a/93:95		Single bulged G
homologous
IL_5J7L_395
IL_00225.13
IL_7PJS_1201/a/128:131,
1/a/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_7PJS_1211/a/132:136,
1/a/227:230		Minor groove platform related
homologous
IL_5J7L_010
IL_64231.5
IL_7PJS_1221/a/147:153,
1/a/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_7PJS_1231/a/203:206,
1/a/213:214		Minor groove platform
geometric
IL_3IWN_005
IL_15052.4
IL_7PJS_1241/a/242:247,
1/a/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_7PJS_1251/a/249:252,
1/a/274:275		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_7PJS_1261/a/292:293,
1/a/304:308		C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_7PJS_1271/a/367:369,
1/a/392:393		Single bulged U
homologous
IL_5J7L_017
IL_89505.4
IL_7PJS_1281/a/371:375,
1/a/389:390		C-loop
homologous
IL_5J7L_018
IL_03109.3
IL_7PJS_1291/a/375:376,
1/a/387:389		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_7PJS_1301/a/409:416,
1/a/427:433		No text annotation
homologous
IL_5J7L_020
IL_28026.3
IL_7PJS_1311/a/440:442,
1/a/492:497		No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_7PJS_1321/a/446:450,
1/a/483:488		tSH-tHW-tWW
homologous
IL_5J7L_022
IL_88269.4
IL_7PJS_1331/a/450:455,
1/a/477:483		No text annotation
geometric
IL_5J7L_023
IL_70801.1
IL_7PJS_1341/a/455:457,
1/a/475:477		Isolated non-canonical cWW pair
geometric
IL_4E59_001
IL_87907.2
IL_7PJS_1351/a/504:511,
1/a/540:541		SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_7PJS_1361/a/515:521,
1/a/528:536		Kink-turn related
homologous
IL_4LFB_021
IL_54177.4
IL_7PJS_1371/a/594:596,
1/a/644:645		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_7PJS_1381/a/597:598,
1/a/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.4
IL_7PJS_1391/a/602:604,
1/a/634:636		Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_7PJS_1401/a/605:612,
1/a/628:633		No text annotation
homologous
IL_5J7L_030
IL_78349.3

Problematic loops

#loop idProblemSequence
IL_7PJS_076No text annotation
IL_7PJS_077No text annotation
IL_7PJS_145No text annotation
IL_7PJS_086No text annotation
IL_7PJS_087Major groove platform with extra pair
IL_7PJS_090No text annotation
IL_7PJS_094No text annotation
IL_7PJS_119Single bulged G, near cWW
IL_7PJS_151Isolated cWH basepair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7PJS_0011/A/30:31,
1/A/474:481,
1/A/509:510		No text annotation
homologous
J3_5J7L_036
J3_60031.2
J3_7PJS_0161/A/30:31,
1/A/474:484,
1/A/496:510		No text annotation
homologous
J3_5J7L_066
J3_92134.2
J3_7PJS_0171/A/32:35,
1/A/445:461,
1/A/468:473		No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_7PJS_0021/A/56:57,
1/A/70:76,
1/A/110:114		No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_7PJS_0181/A/297:301,
1/A/316:325,
1/A/337:341		No text annotation
homologous
J3_5J7L_068
J3_46299.2
J3_7PJS_0031/A/683:689,
1/A/773:775,
1/A/791:794		No text annotation
homologous
J3_5J7L_038
J3_64189.2
J3_7PJS_0041/A/698:700,
1/A/732:736,
1/A/760:763		No text annotation
homologous
J3_5J7L_039
J3_44724.7
J3_7PJS_0191/A/1053:1062,
1/A/1076:1091,
1/A/1100:1106		No text annotation
J3_7PJS_0051/A/1055:1062,
1/A/1076:1091,
1/A/1100:1104		No text annotation
J3_7PJS_0061/A/1298:1303,
1/A/1625:1627,
1/A/1639:1642		No text annotation
homologous
J3_5J7L_041
J3_32852.6
J3_7PJS_0071/A/1306:1309,
1/A/1605:1611,
1/A/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_71677.1
J3_7PJS_0081/A/1344:1349,
1/A/1382:1385,
1/A/1402:1403		No text annotation
homologous
J3_5J7L_043
J3_92705.1
J3_7PJS_0201/A/1424:1429,
1/A/1564:1565,
1/A/1568:1574		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_7PJS_0091/A/2091:2093,
1/A/2196:2200,
1/A/2223:2228		Kink-turn in J3
homologous
J3_5J7L_044
J3_89368.5
J3_7PJS_0211/A/2282:2284,
1/A/2384:2395,
1/A/2421:2427		No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_7PJS_0101/A/2295:2299,
1/A/2317:2323,
1/A/2332:2337		No text annotation
J3_7PJS_0111/A/2517:2520,
1/A/2545:2547,
1/A/2561:2567		No text annotation
homologous
J3_5J7L_046
J3_32601.5
J3_7PJS_0121/A/2789:2791,
1/A/2805:2806,
1/A/2892:2894		No text annotation
homologous
J3_5J7L_047
J3_30104.1
J3_7PJS_0131/A/2812:2815,
1/A/2831:2836,
1/A/2882:2888		No text annotation
homologous
J3_5J7L_048
J3_64069.1
J3_7PJS_0141/B/10:16,
1/B/68:70,
1/B/106:110		No text annotation
homologous
J3_5J7L_049
J3_89095.1
J3_7PJS_0151/a/46:47,
1/a/361:367,
1/a/393:395		No text annotation
homologous
J3_5J7L_001
J3_67856.4
J3_7PJS_0221/a/46:52,
1/a/359:367,
1/a/393:395		No text annotation
homologous
J3_4LFB_014
J3_46317.4
J4_7PJS_0011/A/268:269,
1/A/370:375,
1/A/399:406,
1/A/421:424		No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_7PJS_0021/A/601:604,
1/A/624:628,
1/A/635:638,
1/A/650:656		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_7PJS_0031/A/1270:1276,
1/A/1294:1295,
1/A/1645:1648,
1/A/2009:2010		No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_7PJS_0041/A/1310:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1604		No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_7PJS_0051/A/1313:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1603		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_7PJS_0061/A/1444:1445,
1/A/1466:1467,
1/A/1525:1526,
1/A/1546:1547		No text annotation
homologous
J4_5J7L_024
J4_24280.2
J4_7PJS_0071/A/1772:1776,
1/A/1788:1792,
1/A/1827:1830,
1/A/1975:1979		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_7PJS_0081/A/1833:1835,
1/A/1905:1906,
1/A/1924:1933,
1/A/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_7PJS_0091/A/2285:2289,
1/A/2343:2347,
1/A/2370:2372,
1/A/2381:2383		No text annotation
homologous
J4_5J7L_027
J4_04930.6
J4_7PJS_0101/A/2643:2646,
1/A/2674:2676,
1/A/2731:2735,
1/A/2769:2771		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J4_7PJS_0111/a/115:122,
1/a/239:240,
1/a/286:289,
1/a/311:312		No text annotation
homologous
J4_5J7L_001
J4_35578.3
J4_7PJS_0121/a/142:146,
1/a/176:184,
1/a/193:198,
1/a/219:221		No text annotation
J5_7PJS_0011/A/47:54,
1/A/116:121,
1/A/130:131,
1/A/148:150,
1/A/176:178		No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_7PJS_0021/A/531:533,
1/A/560:564,
1/A/577:579,
1/A/1261:1262,
1/A/2017:2018		No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_7PJS_0031/A/584:589,
1/A/668:671,
1/A/809:812,
1/A/1195:1196,
1/A/1250:1256		No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_7PJS_0041/A/1674:1682,
1/A/1706:1707,
1/A/1751:1752,
1/A/1756:1764,
1/A/1988:1990		No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_7PJS_0051/A/2057:2064,
1/A/2446:2453,
1/A/2500:2507,
1/A/2582:2588,
1/A/2606:2611		No text annotation
J5_7PJS_0061/A/2074:2077,
1/A/2243:2246,
1/A/2258:2259,
1/A/2281:2282,
1/A/2427:2435		No text annotation
homologous
J5_9DFE_007
J5_39529.1
J5_7PJS_0071/a/36:39,
1/a/403:406,
1/a/436:440,
1/a/497:500,
1/a/545:548		No text annotation
homologous
J5_5J7L_001
J5_92941.1
J5_7PJS_0081/a/36:39,
1/a/403:406,
1/a/436:442,
1/a/492:500,
1/a/545:548		No text annotation
homologous
J5_5J7L_002
J5_67416.1
J5_7PJS_0091/a/58:61,
1/a/106:113,
1/a/314:316,
1/a/337:339,
1/a/350:354		No text annotation
homologous
J5_5J7L_003
J5_59910.6
J6_7PJS_0011/A/45:46,
1/A/179:183,
1/A/214:224,
1/A/231:235,
1/A/262:266,
1/A/426:433		No text annotation
J6_7PJS_0021/A/2074:2077,
1/A/2243:2246,
1/A/2258:2259,
1/A/2281:2284,
1/A/2384:2395,
1/A/2421:2435		No text annotation
J7_7PJS_0011/A/8:15,
1/A/525:531,
1/A/2018:2023,
1/A/2040:2043,
1/A/2625:2630,
1/A/2788:2789,
1/A/2894:2895		No text annotation
J7_7PJS_0021/A/817:822,
1/A/835:838,
1/A/940:946,
1/A/971:976,
1/A/987:991,
1/A/1163:1164,
1/A/1185:1190		No text annotation

Problematic loops

No problematic loops


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