6ZVI Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6ZVI_001 | 1/d/13:22 | No text annotation Not in a motif group | homologous HL_6ORD_035 HL_14843.1 | |
| HL_6ZVI_002 | 1/d/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4YCO_002 HL_53597.2 | |
| HL_6ZVI_003 | 1/d/53:61 | No text annotation Not in a motif group | homologous HL_6GSL_222 NA | |
| HL_6ZVI_004 | 1/e/13:23 | No text annotation Not in a motif group | homologous HL_5UD5_001 HL_09136.1 | |
| HL_6ZVI_005 | 1/e/31:41 | No text annotation Not in a motif group | homologous HL_1H4S_002 HL_87939.1 | |
| HL_6ZVI_006 | 1/e/54:62 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_6UFG_008 HL_89380.2 | |
| HL_6ZVI_007 | 1/h/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6ZVI_008 | 1/h/70:81 | No text annotation Not in a motif group | ||
| HL_6ZVI_009 | 1/h/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_6ZVI_010 | 1/h/190:195 | No text annotation Not in a motif group | geometric HL_7RQB_011 HL_75407.1 | |
| HL_6ZVI_011 | 1/h/230:235 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_6ZVI_012 | 1/h/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6ZVI_013 | 1/h/276:279 | No text annotation Not in a motif group | geometric HL_5TBW_071 HL_53837.1 | |
| HL_6ZVI_014 | 1/h/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_6ZVI_015 | 1/h/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6ZVI_016 | 1/h/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6ZVI_017 | 1/h/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_6ZVI_018 | 1/h/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6ZVI_019 | 1/h/491:496 | No text annotation Not in a motif group | ||
| HL_6ZVI_020 | 1/h/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_6ZVI_021 | 1/h/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_6ZVI_022 | 1/h/716:722 | No text annotation Not in a motif group | ||
| HL_6ZVI_023 | 1/h/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6ZVI_024 | 1/h/777:783 | No text annotation Not in a motif group | ||
| HL_6ZVI_025 | 1/h/829:843 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_6ZVI_026 | 1/h/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6ZVI_027 | 1/h/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6ZVI_028 | 1/h/997:1007 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_6ZVI_029 | 1/h/1055:1064 | No text annotation Not in a motif group | geometric HL_5J7L_012 HL_84085.2 | |
| HL_6ZVI_030 | 1/h/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_6ZVI_031 | 1/h/1121:1126 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6ZVI_032 | 1/h/1188:1197 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_6ZVI_033 | 1/h/1238:1247 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_6ZVI_034 | 1/h/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_6ZVI_035 | 1/h/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_6ZVI_036 | 1/h/1359:1364 | No text annotation Not in a motif group | homologous HL_4V88_216 HL_10278.1 | |
| HL_6ZVI_037 | 1/h/1396:1402 | No text annotation Not in a motif group | homologous HL_8C3A_222 HL_67216.7 | |
| HL_6ZVI_038 | 1/h/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_6ZVI_039 | 1/h/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_6ZVI_040 | 1/h/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6ZVI_041 | 1/h/1686:1715 | No text annotation Not in a motif group | ||
| HL_6ZVI_042 | 1/h/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6ZVI_001 | 1/e/28:30, 1/e/42:45 | No text annotation Not in a motif group | ||
| IL_6ZVI_002 | 1/h/24:26, 1/h/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_6ZVI_003 | 1/h/35:37, 1/h/471:473 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_6ZVI_004 | 1/h/37:41, 1/h/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_6ZVI_005 | 1/h/42:48, 1/h/431:433 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_6ZVI_006 | 1/h/50:52, 1/h/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6ZVI_007 | 1/h/58:63, 1/h/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6ZVI_008 | 1/h/64:69, 1/h/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_6ZVI_009 | 1/h/109:112, 1/h/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_6ZVI_010 | 1/h/113:116, 1/h/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_6ZVI_011 | 1/h/117:122, 1/h/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6ZVI_012 | 1/h/143:149, 1/h/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6ZVI_013 | 1/h/150:152, 1/h/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_6RA4_002 IL_51629.2 | |
| IL_6ZVI_014 | 1/h/186:190, 1/h/195:199 | Triple sheared Not in a motif group | geometric IL_4WFL_001 IL_56467.8 | |
| IL_6ZVI_015 | 1/h/204:206, 1/h/259:263 | Major groove platform with extra cWW Not in a motif group | geometric IL_7RQB_022 IL_05564.2 | |
| IL_6ZVI_016 | 1/h/206:208, 1/h/257:259 | No text annotation Not in a motif group | homologous IL_4V88_398 IL_95997.1 | |
| IL_6ZVI_017 | 1/h/265:267, 1/h/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6ZVI_018 | 1/h/270:273, 1/h/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_6ZVI_019 | 1/h/275:276, 1/h/279:281 | Single bulged U Not in a motif group | homologous IL_4V88_401 IL_83039.13 | |
| IL_6ZVI_020 | 1/h/311:316, 1/h/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6ZVI_021 | 1/h/318:323, 1/h/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6ZVI_022 | 1/h/363:365, 1/h/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6ZVI_023 | 1/h/411:413, 1/h/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_6ZVI_024 | 1/h/439:441, 1/h/463:464 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.13 | |
| IL_6ZVI_025 | 1/h/443:447, 1/h/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6ZVI_026 | 1/h/447:448, 1/h/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6ZVI_027 | 1/h/480:483, 1/h/504:508 | No text annotation Not in a motif group | ||
| IL_6ZVI_028 | 1/h/514:516, 1/h/536:543 | No text annotation Not in a motif group | ||
| IL_6ZVI_029 | 1/h/517:518, 1/h/533:535 | Minor groove platform Not in a motif group | geometric IL_4LFB_004 IL_93353.1 | |
| IL_6ZVI_030 | 1/h/518:520, 1/h/532:533 | Minor groove platform Not in a motif group | homologous IL_4V88_412 IL_93353.1 | |
| IL_6ZVI_031 | 1/h/550:557, 1/h/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_6ZVI_032 | 1/h/557:559, 1/h/586:587 | Single bulged U Not in a motif group | homologous IL_4V88_414 IL_83039.13 | |
| IL_6ZVI_033 | 1/h/562:568, 1/h/575:583 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_6ZVI_034 | 1/h/616:622, 1/h/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6ZVI_035 | 1/h/624:626, 1/h/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6ZVI_036 | 1/h/627:631, 1/h/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6ZVI_037 | 1/h/646:648, 1/h/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
| IL_6ZVI_038 | 1/h/648:652, 1/h/683:686 | No text annotation Not in a motif group | ||
| IL_6ZVI_039 | 1/h/652:657, 1/h/677:683 | No text annotation Not in a motif group | ||
| IL_6ZVI_040 | 1/h/698:699, 1/h/738:740 | No text annotation Not in a motif group | ||
| IL_6ZVI_041 | 1/h/699:701, 1/h/737:738 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_6ZVI_042 | 1/h/746:747, 1/h/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_6ZVI_043 | 1/h/748:750, 1/h/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_6ZVI_044 | 1/h/751:759, 1/h/791:798 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_6ZVI_045 | 1/h/817:822, 1/h/850:854 | No text annotation Not in a motif group | ||
| IL_6ZVI_046 | 1/h/865:866, 1/h/962:965 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
| IL_6ZVI_047 | 1/h/867:870, 1/h/957:961 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.2 | |
| IL_6ZVI_048 | 1/h/871:874, 1/h/953:956 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_430 IL_30621.2 | |
| IL_6ZVI_049 | 1/h/874:878, 1/h/950:953 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_6ZVI_050 | 1/h/893:899, 1/h/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_6ZVI_051 | 1/h/982:990, 1/h/1014:1019 | No text annotation Not in a motif group | ||
| IL_6ZVI_052 | 1/h/990:994, 1/h/1010:1014 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.1 | |
| IL_6ZVI_053 | 1/h/1034:1036, 1/h/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6ZVI_054 | 1/h/1041:1044, 1/h/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_6ZVI_055 | 1/h/1051:1053, 1/h/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_6ZVI_056 | 1/h/1111:1118, 1/h/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_6ZVI_057 | 1/h/1146:1147, 1/h/1630:1632 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_6ZVI_058 | 1/h/1149:1151, 1/h/1627:1628 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_6ZVI_059 | 1/h/1157:1160, 1/h/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6ZVI_060 | 1/h/1173:1175, 1/h/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_6ZVI_061 | 1/h/1178:1179, 1/h/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6ZVI_062 | 1/h/1213:1215, 1/h/1448:1450 | CA cWW Not in a motif group | geometric IL_1KFO_003 IL_95997.1 | |
| IL_6ZVI_063 | 1/h/1224:1233, 1/h/1252:1259 | No text annotation Not in a motif group | ||
| IL_6ZVI_064 | 1/h/1234:1236, 1/h/1249:1251 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_6ZVI_065 | 1/h/1268:1270, 1/h/1440:1441 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_6ZVI_066 | 1/h/1272:1276, 1/h/1436:1438 | Isolated cWS basepair Not in a motif group | homologous IL_4V88_450 IL_76319.2 | |
| IL_6ZVI_067 | 1/h/1276:1278, 1/h/1430:1436 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_451 IL_92788.2 | |
| IL_6ZVI_068 | 1/h/1280:1281, 1/h/1426:1428 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_6ZVI_069 | 1/h/1290:1292, 1/h/1323:1325 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_6ZVI_070 | 1/h/1306:1308, 1/h/1317:1318 | Minor groove platform Not in a motif group | geometric IL_4V88_454 IL_93353.1 | |
| IL_6ZVI_071 | 1/h/1339:1342, 1/h/1383:1385 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_6ZVI_072 | 1/h/1345:1348, 1/h/1377:1380 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_6ZVI_073 | 1/h/1352:1354, 1/h/1369:1373 | No text annotation Not in a motif group | homologous IL_4V88_457 IL_95997.1 | |
| IL_6ZVI_074 | 1/h/1389:1391, 1/h/1407:1412 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_458 IL_58032.1 | |
| IL_6ZVI_075 | 1/h/1480:1487, 1/h/1519:1527 | No text annotation Not in a motif group | homologous IL_4V88_459 IL_10447.1 | |
| IL_6ZVI_076 | 1/h/1488:1494, 1/h/1513:1518 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_6ZVI_077 | 1/h/1495:1498, 1/h/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_6ZVI_078 | 1/h/1540:1545, 1/h/1566:1571 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_6ZVI_079 | 1/h/1636:1638, 1/h/1764:1767 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_6ZVI_080 | 1/h/1638:1641, 1/h/1760:1764 | No text annotation Not in a motif group | homologous IL_4V88_464 IL_99670.1 | |
| IL_6ZVI_081 | 1/h/1642:1644, 1/h/1757:1759 | No text annotation Not in a motif group | homologous IL_4V88_465 IL_95997.1 | |
| IL_6ZVI_082 | 1/h/1644:1647, 1/h/1753:1757 | No text annotation Not in a motif group | ||
| IL_6ZVI_083 | 1/h/1650:1652, 1/h/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6ZVI_084 | 1/h/1653:1656, 1/h/1744:1747 | Double sheared Not in a motif group | homologous IL_4V88_468 IL_09705.9 | |
| IL_6ZVI_085 | 1/h/1656:1658, 1/h/1743:1744 | Single bulged U Not in a motif group | geometric IL_4V88_469 IL_83039.13 | |
| IL_6ZVI_086 | 1/h/1675:1678, 1/h/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_6ZVI_087 | 1/h/1678:1682, 1/h/1719:1723 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6ZVI_001 | 1/h/41:42, 1/h/433:439, 1/h/464:466 | No text annotation Not in a motif group | ||
| J3_6ZVI_002 | 1/h/633:635, 1/h/861:865, 1/h/965:966 | No text annotation Not in a motif group | ||
| J3_6ZVI_003 | 1/h/760:763, 1/h/773:775, 1/h/785:790 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_6ZVI_004 | 1/h/1037:1039, 1/h/1079:1083, 1/h/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_6ZVI_005 | 1/h/1161:1164, 1/h/1581:1587, 1/h/1609:1616 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_6ZVI_006 | 1/h/1168:1171, 1/h/1468:1470, 1/h/1574:1577 | No text annotation Not in a motif group | homologous J3_8C3A_039 NA | |
| J3_6ZVI_007 | 1/h/1180:1187, 1/h/1198:1209, 1/h/1454:1458 | No text annotation Not in a motif group | ||
| J3_6ZVI_008 | 1/h/1215:1220, 1/h/1263:1267, 1/h/1442:1448 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_6ZVI_009 | 1/h/1283:1288, 1/h/1327:1332, 1/h/1419:1424 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_6ZVI_010 | 1/h/1293:1294, 1/h/1303:1306, 1/h/1318:1322 | No text annotation Not in a motif group | ||
| J3_6ZVI_011 | 1/h/1336:1338, 1/h/1386:1389, 1/h/1412:1415 | No text annotation Not in a motif group | homologous J3_4V88_040 NA | |
| J3_6ZVI_012 | 1/h/1470:1474, 1/h/1533:1540, 1/h/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA |
Problematic loops
No problematic loops
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