Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A/59:68
geometric
HL_5J7L_134
NA

HL_29414.1*
1/A/87:95
geometric
HL_5J7L_135
NA

HL_17926.5*
1/A/123:128
homologous
HL_7RQB_003
NA

HL_62869.3*
1/A/137:142UNCG
geometric
HL_4AY2_001
NA

HL_79299.11*
1/A/158:168
geometric
HL_5J7L_138
NA

HL_81820.1*
1/A/194:201
homologous
HL_7RQB_006
NA

HL_23481.5*
1/A/225:230
homologous
HL_7RQB_007
NA

HL_06569.2*
1/A/246:252
homologous
HL_7RQB_008
NA

HL_67216.5*
1/A/305:312
homologous
HL_7RQB_010
NA

HL_68493.6*
1/A/319:323
homologous
HL_7RQB_011
NA

HL_98557.5*
1/A/327:335
homologous
HL_7RQB_012
NA

HL_08002.6*
1/A/382:392
homologous
HL_7RQB_013
NA

HL_91503.3*
1/A/410:417
homologous
HL_7RQB_014
NA

HL_32512.8*
1/A/462:467
homologous
HL_7RQB_015
NA

HL_43074.18*
1/A/487:493
homologous
HL_7RQB_016
NA

HL_43074.18*
1/A/543:550
homologous
HL_7RQB_017
NA
1/A/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
NA

HL_33239.17*
1/A/611:617
geometric
HL_5J7L_151
NA

HL_25660.1*
1/A/629:634
homologous
HL_7RQB_020
NA

HL_43074.18*
1/A/641:647
geometric
HL_5J7L_153
NA

HL_16419.1*
1/A/712:719
homologous
HL_7RQB_022
NA

HL_93727.5*
1/A/744:753
homologous
HL_7RQB_023
NA

HL_39334.5*
1/A/779:785
homologous
HL_7RQB_024
NA

HL_16898.3*
1/A/826:831
homologous
HL_7RQB_025
NA

HL_15942.5*
1/A/880:897NANA
1/A/954:963
geometric
HL_3RG5_006
NA

HL_83315.1*
1/A/978:985
homologous
HL_7RQB_028
NA

HL_72451.5*
1/A/1064:1074
geometric
HL_1MMS_001
NA

HL_92304.3*
1/A/1092:1099
homologous
HL_7RQB_030
NA
1/A/1172:1177NANA
1/A/1222:1227
homologous
HL_7RQB_032
NA

HL_43074.18*
1/A/1281:1289
homologous
HL_7RQB_033
NA

HL_33239.17*
1/A/1324:1330
homologous
HL_7RQB_034
NA

HL_86880.5*
1/A/1363:1368
homologous
HL_7RQB_035
NA

HL_43074.18*
1/A/1389:1398
homologous
HL_7RQB_036
NA

HL_78457.4*
1/A/1451:1459
homologous
HL_7RQB_037
NA

HL_71540.1*
1/A/1492:1498
homologous
HL_7RQB_038
NA

HL_86880.5*
1/A/1533:1538UNCG
geometric
HL_1NBS_006
NA

HL_79299.11*
1/A/1565:1568
homologous
HL_7RQB_039
NA

HL_69353.7*
1/A/1612:1619NANA
1/A/1630:1636GNRA with one bulged base
geometric
HL_5J7L_174
NA

HL_02361.6*
1/A/1691:1696
geometric
HL_7RQB_042
NA

HL_79299.11*
1/A/1728:1731
geometric
HL_5J7L_176
NA

HL_46546.1*
1/A/1752:1756
homologous
HL_7RQB_044
NA

HL_79272.3*
1/A/1777:1787
homologous
HL_7RQB_045
NA

HL_43613.4*
1/A/1806:1811
homologous
HL_7RQB_046
NA

HL_43074.18*
1/A/1868:1873
geometric
HL_6LAX_002
NA

HL_62604.1*
1/A/1910:1920NANA
1/A/1949:1957
homologous
HL_7RQB_049
NA

HL_53760.4*
1/A/2027:2036NANA
1/A/2143:2148Other HL
geometric
HL_2CZJ_007
NA

HL_79299.11*
1/A/2209:2215
geometric
HL_5J7L_185
NA

HL_16845.5*
1/A/2248:2256
homologous
HL_7RQB_053
NA
1/A/2264:2276
homologous
HL_7RQB_054
NA

HL_19870.5*
1/A/2303:2313
homologous
HL_7RQB_055
NA

HL_11805.3*
1/A/2324:2331
homologous
HL_7RQB_056
NA

HL_46142.8*
1/A/2356:2361Other HL
geometric
HL_5J7L_190
NA

HL_43074.18*
1/A/2374:2379
homologous
HL_7RQB_058
NA

HL_43074.18*
1/A/2404:2413
homologous
HL_7RQB_059
NA

HL_48376.4*
1/A/2471:2479
homologous
HL_7RQB_060
NA

HL_36421.5*
1/A/2528:2535
homologous
HL_7RQB_061
NA

HL_92681.5*
1/A/2551:2557
homologous
HL_7RQB_062
NA
1/A/2594:2599
homologous
HL_7RQB_063
NA

HL_43074.18*
1/A/2658:2663
homologous
HL_7RQB_064
NA

HL_43074.18*
1/A/2701:2706Ribsomal LSU H95
geometric
HL_5J7L_198
NA

HL_67719.1*
1/A/2745:2759
homologous
HL_7RQB_066
NA

HL_56677.5*
1/A/2795:2801Other HL
geometric
HL_5J7L_200
NA

HL_96776.3*
1/A/2819:2827
homologous
HL_7RQB_068
NA

HL_05018.6*
1/A/2856:2861
homologous
HL_7RQB_069
NA

HL_43074.18*
1/B/38:44NANA
1/B/86:90NANA
1/f/13:22NANA
1/f/31:39NANA
1/f/53:61NANA
1/g/13:22NANA
1/g/29:41NANA
1/g/53:61NANA

Problematic loops

No problematic loops

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A/24:30,
1/A/510:516
Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA

IL_66414.5*
1/A/36:37,
1/A/442:444
Single bulged A
homologous
IL_7RQB_002
NA

IL_80007.16*
1/A/43:44,
1/A/434:436
Minor groove platform
homologous
IL_7RQB_003
NA

IL_06437.11*
1/A/81:85,
1/A/97:105

geometric
IL_5J7L_248
NA

IL_85931.1*
1/A/183:184,
1/A/212:214
Single stack bend
homologous
IL_7RQB_005
NA

IL_04038.4*
1/A/188:194,
1/A/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
NA

IL_04346.5*
1/A/239:245,
1/A/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA

IL_35110.5*
1/A/269:271,
1/A/366:370

geometric
IL_5J7L_252
NA

IL_47972.1*
1/A/274:281,
1/A/359:363

geometric
IL_5J7L_253
NA

IL_77870.1*
1/A/293:295,
1/A/343:347

homologous
IL_7RQB_013
NA

IL_69440.1*
1/A/481:484,
1/A/496:509

homologous
IL_7RQB_014
NA

IL_60992.5*
1/A/536:539,
1/A/554:557
Double sheared
geometric
IL_5J7L_256
NA

IL_09705.7*
1/A/564:566,
1/A/575:577

homologous
IL_7RQB_015
NA

IL_01312.13*
1/A/606:610,
1/A/618:622
AAA cross-strand stack
homologous
IL_7RQB_016
NA

IL_56467.6*
1/A/672:674,
1/A/806:808

geometric
IL_7RQB_017
NA

IL_01312.13*
1/A/674:678,
1/A/799:806

homologous
IL_7RQB_018
NA

IL_17470.5*
1/A/697:698,
1/A/763:765
Single bulged A
geometric
IL_5J7L_261
NA

IL_80007.16*
1/A/702:703,
1/A/728:730
Single bulged G
geometric
IL_5J7L_262
NA

IL_59137.10*
1/A/703:707,
1/A/724:728
Triple sheared
homologous
IL_7RQB_021
NA

IL_56467.6*
1/A/738:740,
1/A/757:758
Major groove platform
geometric
IL_5J7L_264
NA

IL_80663.10*
1/A/775:777,
1/A/787:791
Multiple bulged bases
homologous
IL_7RQB_023
NA

IL_90991.5*
1/A/844:847,
1/A/933:934
NANA
1/A/847:848,
1/A/930:933
Stack outside cWW
geometric
IL_5J7L_268
NA

IL_37629.1*
1/A/850:851,
1/A/926:928
Single stack bend
geometric
IL_5J7L_269
NA

IL_04038.4*
1/A/856:862,
1/A/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
NA

IL_93830.2*
1/A/862:863,
1/A/913:915
Minor groove platform
homologous
IL_7RQB_028
NA

IL_06437.11*
1/A/864:868,
1/A/909:912
C-loop
homologous
IL_7RQB_029
NA

IL_63596.4*
1/A/870:872,
1/A/905:907
Isolated cWS basepair
homologous
IL_7RQB_030
NA

IL_67621.5*
1/A/875:879,
1/A/898:902
Triple sheared
geometric
IL_4V9F_085
NA

IL_56467.6*
1/A/994:996,
1/A/1159:1160
Single bulged C
homologous
IL_7RQB_035
NA

IL_61258.10*
1/A/998:1002,
1/A/1153:1157
UAA/GAN
homologous
IL_7RQB_036
NA

IL_53523.5*
1/A/1004:1011,
1/A/1150:1151
SSU/LSU pseudoknot
geometric
IL_5J7L_278
NA

IL_15861.6*
1/A/1011:1013,
1/A/1149:1150
Single bulged U
homologous
IL_7RQB_038
NA

IL_83039.11*
1/A/1018:1024,
1/A/1140:1144

geometric
IL_5J7L_280
NA

IL_57188.3*
1/A/1024:1030,
1/A/1124:1140

geometric
IL_5J7L_281
NA

IL_22615.1*
1/A/1031:1034,
1/A/1121:1123
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_041
NA

IL_55456.1*
1/A/1038:1041,
1/A/1114:1117
Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
NA

IL_85877.10*
1/A/1043:1051,
1/A/1108:1112
Kink-turn
homologous
IL_7RQB_042
NA

IL_90538.3*
1/A/1059:1062,
1/A/1076:1079

geometric
IL_1MMS_001
NA

IL_23544.2*
1/A/1087:1091,
1/A/1100:1102
Major groove platform with extra cWW
geometric
IL_5D8H_003
NA

IL_95485.6*
1/A/1196:1198,
1/A/1247:1250
Isolated cWS basepair
homologous
IL_7RQB_045
NA

IL_67621.5*
1/A/1202:1206,
1/A/1240:1243

geometric
IL_5J7L_287
NA

IL_91920.1*
1/A/1208:1215,
1/A/1234:1238
Kink-turn
homologous
IL_7RQB_047
NA

IL_29549.9*
1/A/1262:1269,
1/A/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA

IL_04346.5*
1/A/1310:1313,
1/A/1603:1604
Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA

IL_70995.6*
1/A/1319:1323,
1/A/1331:1333
C-loop
homologous
IL_7RQB_051
NA

IL_63596.4*
1/A/1351:1355,
1/A/1376:1380
UAA/GAN
homologous
IL_7RQB_052
NA

IL_53523.5*
1/A/1357:1361,
1/A/1370:1374
tSH-tHW-tHS
homologous
IL_7RQB_053
NA

IL_39521.5*
1/A/1415:1416,
1/A/1582:1587

geometric
IL_5J7L_294
NA

IL_90348.1*
1/A/1417:1421,
1/A/1577:1581
UAA/GAN
homologous
IL_7RQB_055
NA

IL_53523.5*
1/A/1432:1435,
1/A/1557:1561
Tandem non-canonical cWW pairs
geometric
IL_5J7L_296
NA

IL_85877.10*
1/A/1437:1440,
1/A/1551:1555
tSH-tHW
homologous
IL_7RQB_057
NA

IL_08757.3*
1/A/1450:1451,
1/A/1459:1461
Single bulged U
geometric
IL_5J7L_298
NA

IL_83039.11*
1/A/1468:1471,
1/A/1520:1524

geometric
IL_5J7L_299
NA

IL_68574.2*
1/A/1474:1478,
1/A/1513:1517
tSH-tHW-tHS
geometric
IL_5J7L_300
NA

IL_39521.5*
1/A/1481:1482,
1/A/1507:1510

geometric
IL_5J7L_301
NA

IL_67474.3*
1/A/1489:1491,
1/A/1499:1500
Single bulged A
geometric
IL_5J7L_302
NA

IL_80007.16*
1/A/1526:1529,
1/A/1542:1546
UAA/GAN variation
geometric
IL_5J7L_303
NA

IL_81389.2*
1/A/1651:1656,
1/A/2004:2006

homologous
IL_7RQB_064
NA

IL_12566.2*
1/A/1663:1665,
1/A/1995:1997
Isolated tWW turn
homologous
IL_7RQB_065
NA

IL_54997.5*
1/A/1666:1669,
1/A/1993:1994
Major groove platform; stack outside cWW
geometric
IL_5J7L_306
NA

IL_80663.10*
1/A/1669:1674,
1/A/1990:1993
Intercalated tWH
homologous
IL_7RQB_067
NA

IL_01312.13*
1/A/1686:1691,
1/A/1696:1702
tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA

IL_66584.5*
1/A/1712:1718,
1/A/1742:1746
6x5 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_309
NA

IL_88269.2*
1/A/1720:1724,
1/A/1736:1740
Triple sheared
geometric
IL_5J7L_310
NA

IL_56467.6*
1/A/1727:1728,
1/A/1731:1733
Single bulged C
geometric
IL_5J7L_311
NA

IL_61258.10*
1/A/1770:1771,
1/A/1980:1982
Single bulged A
homologous
IL_7RQB_069
NA

IL_80007.16*
1/A/1798:1804,
1/A/1813:1821
Kink-turn related
homologous
IL_7RQB_070
NA

IL_17069.3*
1/A/1837:1840,
1/A/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_7RQB_071
NA

IL_31836.1*
1/A/1841:1842,
1/A/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
geometric
IL_5J7L_315
NA

IL_13730.12*
1/A/1846:1849,
1/A/1893:1894
Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_316
NA

IL_09061.4*
1/A/1864:1867,
1/A/1874:1878
UAA/GAN related
geometric
IL_5J7L_317
NA

IL_81389.2*
1/A/1933:1934,
1/A/1964:1967
Multiple bulged bases
geometric
IL_5J7L_318
NA

IL_69632.1*
1/A/1934:1945,
1/A/1961:1964

geometric
IL_7A0S_072
NA

IL_07097.1*
1/A/2050:2052,
1/A/2617:2618
Major groove platform
homologous
IL_7RQB_078
NA

IL_80663.10*
1/A/2054:2056,
1/A/2612:2615

geometric
IL_5J7L_321
NA

IL_54678.3*
1/A/2064:2066,
1/A/2444:2446

geometric
IL_6OL3_002
NA

IL_01312.13*
1/A/2067:2070,
1/A/2441:2443

geometric
IL_5C5W_002
NA

IL_87880.2*
1/A/2070:2071,
1/A/2438:2441
Minor groove platform
homologous
IL_7RQB_081
NA

IL_06437.11*
1/A/2081:2083,
1/A/2236:2239
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA

IL_38958.6*
1/A/2085:2087,
1/A/2232:2234

homologous
IL_7RQB_083
NA

IL_01312.13*
1/A/2101:2106,
1/A/2183:2188
NANA
1/A/2107:2123,
1/A/2175:2182

geometric
IL_5J7L_328
NA

IL_20245.1*
1/A/2124:2128,
1/A/2160:2174
NANA
1/A/2129:2136,
1/A/2155:2159

homologous
IL_7RQB_087
NA
1/A/2202:2204,
1/A/2220:2221
Single bulged U
geometric
IL_5J7L_331
NA

IL_21340.1*
1/A/2297:2299,
1/A/2317:2321

geometric
IL_5J7L_332
NA

IL_56105.1*
1/A/2350:2353,
1/A/2364:2367
Double sheared
homologous
IL_7RQB_089
NA

IL_09705.7*
1/A/2401:2403,
1/A/2414:2415
Single bulged U
geometric
IL_6UFG_004
NA

IL_83039.11*
1/A/2453:2455,
1/A/2496:2500
NANA
1/A/2456:2459,
1/A/2493:2495
Major groove platform with extra pair
geometric
IL_7RQB_093
NA

IL_87630.5*
1/A/2459:2461,
1/A/2489:2493
Major groove minor groove platform with extra cWW
homologous
IL_7RQB_094
NA

IL_96042.4*
1/A/2466:2470,
1/A/2480:2484
Triple sheared
homologous
IL_7RQB_095
NA

IL_56467.6*
1/A/2507:2509,
1/A/2579:2582
Major groove platform with extra pair
geometric
IL_7RQB_093
NA

IL_87630.5*
1/A/2510:2512,
1/A/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
NA

IL_01312.13*
1/A/2512:2513,
1/A/2571:2574
Multiple bulged bases
homologous
IL_7RQB_098
NA

IL_13730.12*
1/A/2522:2523,
1/A/2540:2543
Minor groove platform with intercalation
homologous
IL_7RQB_099
NA

IL_95601.1*
1/A/2588:2591,
1/A/2603:2606
Tandem non-canonical cWW pairs
geometric
IL_3WBM_002
NA

IL_85877.10*
1/A/2591:2592,
1/A/2601:2603
Single bulged A
homologous
IL_7RQB_101
NA

IL_80007.16*
1/A/2636:2640,
1/A/2774:2782
tSH-tHS-tHW
homologous
IL_7RQB_102
NA

IL_34907.2*
1/A/2652:2658,
1/A/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_5J7L_346
NA

IL_35110.5*
1/A/2680:2684,
1/A/2725:2727
C-loop
homologous
IL_7RQB_104
NA

IL_63596.4*
1/A/2687:2691,
1/A/2718:2722

homologous
IL_7RQB_105
NA

IL_08296.3*
1/A/2695:2696,
1/A/2711:2714
Multiple bulged bases
homologous
IL_7RQB_106
NA

IL_77034.1*
1/A/2737:2742,
1/A/2762:2767
UAA/GAN with extra cWW
homologous
IL_7RQB_107
NA

IL_49767.4*
1/A/2806:2811,
1/A/2889:2892

geometric
IL_5J7L_351
NA

IL_82988.1*
1/A/2838:2839,
1/A/2878:2880
Single bulged C
homologous
IL_7RQB_108
NA

IL_61258.10*
1/A/2843:2846,
1/A/2870:2874

homologous
IL_7RQB_109
NA

IL_58764.1*
1/A/2847:2852,
1/A/2865:2869

homologous
IL_7RQB_110
NA

IL_83162.3*
1/B/17:18,
1/B/65:67
NANA
1/B/23:28,
1/B/56:60
NANA
1/B/30:31,
1/B/51:54
NANA
1/B/34:38,
1/B/44:48
NANA
1/B/71:79,
1/B/97:105
NANA

Problematic loops

No problematic loops

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A/30:31,
1/A/474:481,
1/A/509:510
NANA
1/A/56:57,
1/A/70:76,
1/A/110:114

homologous
J3_7RQB_002
NA
1/A/683:689,
1/A/773:775,
1/A/791:794
NANA
1/A/698:700,
1/A/732:736,
1/A/760:763

homologous
J3_7RQB_005
NA
1/A/1055:1057,
1/A/1081:1087,
1/A/1102:1104

homologous
J3_7RQB_006
NA
1/A/1298:1303,
1/A/1625:1627,
1/A/1639:1642

homologous
J3_7RQB_007
NA
1/A/1306:1309,
1/A/1605:1611,
1/A/1620:1622

homologous
J3_7RQB_008
NA
1/A/1344:1349,
1/A/1382:1385,
1/A/1402:1403
NANA
1/A/2091:2093,
1/A/2196:2200,
1/A/2223:2228

homologous
J3_7RQB_010
NA
1/A/2295:2297,
1/A/2321:2323,
1/A/2332:2337
NANA
1/A/2517:2520,
1/A/2545:2547,
1/A/2561:2567

homologous
J3_7RQB_012
NA
1/A/2789:2791,
1/A/2805:2806,
1/A/2892:2894
NANA
1/A/2812:2815,
1/A/2831:2836,
1/A/2882:2888
NANA
1/B/10:16,
1/B/68:70,
1/B/106:110
NANA

Problematic loops

No problematic loops


Coloring options:
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