4V68 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V68_001 | 1/AA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4V68_113 | 1/AA/72:97 | No text annotation | ||
| HL_4V68_002 | 1/AA/77:92 | No text annotation | ||
| HL_4V68_114 | 1/AA/155:166 | No text annotation | ||
| HL_4V68_003 | 1/AA/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_4V68_004 | 1/AA/189C:189H | No text annotation | homologous HL_6CZR_075 NA | |
| HL_4V68_005 | 1/AA/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_4V68_006 | 1/AA/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4V68_007 | 1/AA/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_4V68_008 | 1/AA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4V68_009 | 1/AA/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4V68_116 | 1/AA/375:389 | No text annotation | ||
| HL_4V68_010 | 1/AA/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_4V68_011 | 1/AA/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_4V68_126 | 1/AA/458:473 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_4V68_013 | 1/AA/522:527 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_4V68_014 | 1/AA/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_4V68_015 | 1/AA/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_4V68_016 | 1/AA/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_4V68_017 | 1/AA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4V68_018 | 1/AA/838:848 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_4V68_019 | 1/AA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_4V68_020 | 1/AA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_4V68_021 | 1/AA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4V68_022 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_4V68_023 | 1/AA/1076:1081 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
| HL_4V68_024 | 1/AA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4V68_119 | 1/AA/1124:1149 | No text annotation | ||
| HL_4V68_025 | 1/AA/1127:1145 | No text annotation | ||
| HL_4V68_026 | 1/AA/1163:1173 | No text annotation | ||
| HL_4V68_027 | 1/AA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_4V68_028 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4V68_029 | 1/AA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V68_030 | 1/AA/1445:1457 | UNCG | homologous HL_4LFB_031 HL_34617.5 | |
| HL_4V68_031 | 1/AA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
| HL_4V68_032 | 1/AV/13:22 | tRNA D-loop | homologous HL_5B63_003 HL_20811.4 | |
| HL_4V68_033 | 1/AV/31:39 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.5 | |
| HL_4V68_034 | 1/AV/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5AH5_008 HL_28252.6 | |
| HL_4V68_035 | 1/AW/13:22 | No text annotation | homologous HL_5E81_205 NA | |
| HL_4V68_036 | 1/AW/30:40 | No text annotation | homologous HL_4V7M_039 HL_36684.4 | |
| HL_4V68_037 | 1/AW/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6PMO_005 NA | |
| HL_4V68_038 | 1/AY/13:22 | No text annotation | homologous HL_6ORD_035 NA | |
| HL_4V68_120 | 1/AY/31:39 | tRNA anticodon loop | homologous HL_1FIR_005 HL_06059.5 | |
| HL_4V68_040 | 1/AY/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_28252.6 | |
| HL_4V68_041 | 1/BA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V68_042 | 1/BA/87:95 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_4V68_043 | 1/BA/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4V68_044 | 1/BA/139:142A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4V68_045 | 1/BA/154:172 | No text annotation | ||
| HL_4V68_046 | 1/BA/194:201 | No text annotation | homologous HL_5J7L_139 HL_30068.2 | |
| HL_4V68_047 | 1/BA/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4V68_048 | 1/BA/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_4V68_049 | 1/BA/271I:271O | No text annotation | geometric HL_8P9A_231 HL_13189.1 | |
| HL_4V68_050 | 1/BA/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4V68_051 | 1/BA/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.5 | |
| HL_4V68_052 | 1/BA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_4V68_121 | 1/BA/383:391 | No text annotation | ||
| HL_4V68_054 | 1/BA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V68_055 | 1/BA/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4V68_056 | 1/BA/487:493 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
| HL_4V68_057 | 1/BA/542:551 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_4V68_058 | 1/BA/566:575 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_4V68_059 | 1/BA/612:615 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4V68_060 | 1/BA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V68_061 | 1/BA/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4V68_062 | 1/BA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4V68_063 | 1/BA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V68_064 | 1/BA/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4V68_065 | 1/BA/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4V68_122 | 1/BA/875:902 | No text annotation | ||
| HL_4V68_066 | 1/BA/882:894 | No text annotation | ||
| HL_4V68_067 | 1/BA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4V68_068 | 1/BA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V68_069 | 1/BA/1062:1076 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V68_070 | 1/BA/1092:1099 | No text annotation | ||
| HL_4V68_071 | 1/BA/1170:1179 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_4V68_072 | 1/BA/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V68_073 | 1/BA/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_28252.6 | |
| HL_4V68_074 | 1/BA/1324:1330 | No text annotation | geometric HL_7RQB_034 NA | |
| HL_4V68_075 | 1/BA/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4V68_076 | 1/BA/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_4V68_077 | 1/BA/1450A:1461 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
| HL_4V68_078 | 1/BA/1492:1498 | No text annotation | ||
| HL_4V68_079 | 1/BA/1526:1546 | No text annotation | homologous HL_7A0S_038 NA | |
| HL_4V68_080 | 1/BA/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_4V68_081 | 1/BA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V68_082 | 1/BA/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V68_083 | 1/BA/1691:1696 | UNCG | geometric HL_5J7L_175 HL_34617.5 | |
| HL_4V68_084 | 1/BA/1718:1744 | No text annotation | ||
| HL_4V68_085 | 1/BA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V68_086 | 1/BA/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_4V68_087 | 1/BA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V68_088 | 1/BA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V68_089 | 1/BA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V68_090 | 1/BA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V68_091 | 1/BA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V68_092 | 1/BA/2143:2148 | GNRA related | geometric HL_3OXE_002 HL_04783.2 | |
| HL_4V68_093 | 1/BA/2205:2219 | No text annotation | geometric HL_6U8D_003 HL_32346.3 | |
| HL_4V68_094 | 1/BA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V68_095 | 1/BA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V68_127 | 1/BA/2304:2312 | No text annotation | ||
| HL_4V68_097 | 1/BA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V68_098 | 1/BA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V68_099 | 1/BA/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V68_100 | 1/BA/2404:2413 | No text annotation | homologous HL_4WF9_055 HL_53454.2 | |
| HL_4V68_101 | 1/BA/2471:2479 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_4V68_102 | 1/BA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V68_103 | 1/BA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V68_104 | 1/BA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V68_105 | 1/BA/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_4V68_106 | 1/BA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V68_107 | 1/BA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V68_108 | 1/BA/2792:2804 | No text annotation | ||
| HL_4V68_109 | 1/BA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V68_110 | 1/BA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4V68_125 | 1/BB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_4V68_111 | 1/BB/38:44 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_4V68_112 | 1/BB/86:91 | GNRA | homologous HL_7A0S_070 HL_37824.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V68_115 | No text annotation | ||
| HL_4V68_117 | No text annotation | ||
| HL_4V68_012 | No text annotation | ||
| HL_4V68_118 | No text annotation | ||
| HL_4V68_039 | No text annotation | ||
| HL_4V68_053 | No text annotation | ||
| HL_4V68_123 | No text annotation | ||
| HL_4V68_124 | No text annotation | ||
| HL_4V68_096 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V68_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_4V68_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_4V68_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | geometric IL_4LFB_003 IL_14177.2 | |
| IL_4V68_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_4V68_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_4V68_006 | 1/AA/67:69, 1/AA/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_4V68_007 | 1/AA/129:131, 1/AA/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_4V68_008 | 1/AA/132:136, 1/AA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V68_188 | 1/AA/148:153, 1/AA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4V68_010 | 1/AA/186:188, 1/AA/189L:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4V68_011 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4V68_189 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4V68_013 | 1/AA/292:293, 1/AA/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4V68_014 | 1/AA/367:369, 1/AA/392:393 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_4V68_015 | 1/AA/371:375, 1/AA/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_4V68_016 | 1/AA/375:376, 1/AA/387:389 | Single bulged G | geometric IL_4LFB_016 IL_00225.13 | |
| IL_4V68_017 | 1/AA/409:416, 1/AA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4V68_018 | 1/AA/446:450, 1/AA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_4V68_190 | 1/AA/450:455, 1/AA/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V68_020 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_4V68_021 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V68_022 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_4V68_023 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_4V68_024 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4V68_025 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_4V68_171 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_4V68_027 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_4V68_028 | 1/AA/657:658, 1/AA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4V68_029 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4V68_173 | 1/AA/673:677, 1/AA/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_4V68_031 | 1/AA/683:688, 1/AA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V68_032 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_4V68_191 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_4V68_034 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4V68_035 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.5 | |
| IL_4V68_036 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_4V68_037 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4V68_038 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.2 | |
| IL_4V68_039 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform | homologous IL_4LFB_039 IL_47078.3 | |
| IL_4V68_192 | 1/AA/1000:1001A, 1/AA/1040:1041 | Single stack bend | geometric IL_8P9A_298 IL_90729.1 | |
| IL_4V68_193 | 1/AA/1002:1006, 1/AA/1023:1039 | No text annotation | ||
| IL_4V68_042 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_4V68_043 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V68_044 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_4V68_045 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_4V68_046 | 1/AA/1061:1063, 1/AA/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_4V68_176 | 1/AA/1116:1118, 1/AA/1155:1184 | No text annotation | ||
| IL_4V68_047 | 1/AA/1124:1127, 1/AA/1145:1149 | No text annotation | ||
| IL_4V68_177 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4V68_049 | 1/AA/1255:1258, 1/AA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4V68_050 | 1/AA/1259:1262, 1/AA/1273:1276 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_4V68_051 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_4V68_052 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_4V68_053 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V68_054 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_1ZZ5_002 IL_87907.2 | |
| IL_4V68_055 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4V68_056 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V68_057 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4V68_058 | 1/AA/1431:1435, 1/AA/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_4V68_059 | 1/AA/1435:1437, 1/AA/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_4V68_060 | 1/AA/1440:1443, 1/AA/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_4V68_061 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_4V68_062 | 1/BA/36:37, 1/BA/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.5 | |
| IL_4V68_063 | 1/BA/42:43, 1/BA/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_4V68_064 | 1/BA/81:85, 1/BA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V68_065 | 1/BA/183:184, 1/BA/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4V68_066 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_4V68_067 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V68_068 | 1/BA/272D:272E, 1/BA/363E:364 | Major groove platform | homologous IL_8VTW_008 NA | |
| IL_4V68_194 | 1/BA/272J:279, 1/BA/361:363 | No text annotation | ||
| IL_4V68_195 | 1/BA/280:284, 1/BA/357:360 | No text annotation | homologous IL_9DFE_009 IL_99646.2 | |
| IL_4V68_196 | 1/BA/287:290, 1/BA/350:354 | No text annotation | ||
| IL_4V68_072 | 1/BA/293:295, 1/BA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V68_073 | 1/BA/481:484, 1/BA/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4V68_074 | 1/BA/564:566, 1/BA/575:577 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_4V68_075 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_4V68_076 | 1/BA/672:674, 1/BA/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_4V68_077 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_54041.2 | |
| IL_4V68_078 | 1/BA/697:698, 1/BA/763:765 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_4V68_079 | 1/BA/702:703, 1/BA/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_4V68_080 | 1/BA/703:707, 1/BA/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4V68_081 | 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V68_082 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_4V68_083 | 1/BA/837:838, 1/BA/940:942 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_4V68_084 | 1/BA/844:846, 1/BA/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4V68_085 | 1/BA/846:850, 1/BA/927:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4V68_086 | 1/BA/858:862, 1/BA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_4V68_087 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform | homologous IL_4WF9_032 IL_51454.2 | |
| IL_4V68_088 | 1/BA/864:868, 1/BA/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4V68_090 | 1/BA/875:882, 1/BA/894:902 | No text annotation | ||
| IL_4V68_091 | 1/BA/952:954, 1/BA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V68_092 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4V68_093 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4V68_094 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_4V68_095 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_4V68_096 | 1/BA/1018:1024, 1/BA/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_4V68_097 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V68_098 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
| IL_4V68_197 | 1/BA/1042:1052, 1/BA/1107:1113 | No text annotation | ||
| IL_4V68_100 | 1/BA/1059:1062, 1/BA/1076:1079 | No text annotation | ||
| IL_4V68_101 | 1/BA/1087:1091, 1/BA/1100:1102 | Stack and bulge | geometric IL_2O3X_001 IL_31737.3 | |
| IL_4V68_102 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4V68_103 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V68_104 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V68_105 | 1/BA/1219:1221, 1/BA/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V68_106 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V68_107 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V68_183 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop | homologous IL_9DFE_050 IL_63596.11 | |
| IL_4V68_109 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V68_110 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_17136.7 | |
| IL_4V68_111 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4V68_112 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4V68_113 | 1/BA/1433:1435, 1/BA/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4V68_114 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V68_115 | 1/BA/1448:1450, 1/BA/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4V68_116 | 1/BA/1469:1473, 1/BA/1518:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_4V68_117 | 1/BA/1481:1485, 1/BA/1504:1510 | No text annotation | ||
| IL_4V68_184 | 1/BA/1481:1486, 1/BA/1503:1510 | No text annotation | ||
| IL_4V68_118 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.5 | |
| IL_4V68_119 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V68_120 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn | homologous IL_7A0S_060 IL_67095.2 | |
| IL_4V68_121 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_50694.7 | |
| IL_4V68_186 | 1/BA/1666:1674, 1/BA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4V68_122 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_4V68_123 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_4V68_124 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V68_125 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V68_126 | 1/BA/1837:1840, 1/BA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_4V68_127 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_4V68_128 | 1/BA/1846:1849, 1/BA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V68_129 | 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra pair | homologous IL_4WF9_073 IL_89021.2 | |
| IL_4V68_130 | 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V68_131 | 1/BA/1933:1934, 1/BA/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.3 | |
| IL_4V68_132 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_4V68_133 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4V68_134 | 1/BA/2054:2057, 1/BA/2611:2615 | No text annotation | homologous IL_7A0S_074 IL_70335.1 | |
| IL_4V68_135 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_4V68_136 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform | homologous IL_4WF9_081 IL_51454.2 | |
| IL_4V68_137 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V68_138 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V68_139 | 1/BA/2108:2110, 1/BA/2179:2181 | Isolated non-canonical cWW pair | homologous IL_3U4M_001 IL_28037.2 | |
| IL_4V68_140 | 1/BA/2110:2120, 1/BA/2178:2179 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_4V68_141 | 1/BA/2124:2127, 1/BA/2161:2174 | No text annotation | ||
| IL_4V68_142 | 1/BA/2129:2136, 1/BA/2155:2159 | No text annotation | ||
| IL_4V68_143 | 1/BA/2297:2299, 1/BA/2317:2321 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_4V68_144 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V68_145 | 1/BA/2401:2403, 1/BA/2414:2415 | Single bulged U | homologous IL_4WF9_088 IL_89505.4 | |
| IL_4V68_146 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend | homologous IL_7A0S_083 IL_26793.1 | |
| IL_4V68_147 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_4V68_148 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_4V68_149 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_4V68_150 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4V68_151 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4V68_152 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4V68_153 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_4V68_154 | 1/BA/2522:2523, 1/BA/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_02555.1 | |
| IL_4V68_155 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V68_156 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4V68_157 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 IL_16458.4 | |
| IL_4V68_158 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4V68_159 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4V68_160 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases | homologous IL_7A0S_097 IL_42626.2 | |
| IL_4V68_161 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_4V68_162 | 1/BA/2838:2839, 1/BA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V68_163 | 1/BA/2843:2846, 1/BA/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4V68_164 | 1/BA/2847:2852, 1/BA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V68_165 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_4V68_166 | 1/BB/23:28, 1/BB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4V68_198 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_126 IL_68140.4 | |
| IL_4V68_168 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_4V68_169 | 1/BB/71:79, 1/BB/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V68_170 | No text annotation | ||
| IL_4V68_009 | tWH-tWH-tHW-tHW | ||
| IL_4V68_012 | No text annotation | ||
| IL_4V68_019 | No text annotation | ||
| IL_4V68_026 | No text annotation | ||
| IL_4V68_172 | Major groove platform with extra cWW | ||
| IL_4V68_030 | No text annotation | ||
| IL_4V68_174 | Other IL | ||
| IL_4V68_033 | tSH-tHW-tHS-cWW | ||
| IL_4V68_040 | No text annotation | ||
| IL_4V68_041 | No text annotation | ||
| IL_4V68_175 | Isolated non-canonical cWW pair | ||
| IL_4V68_048 | No text annotation | ||
| IL_4V68_178 | Triple sheared | ||
| IL_4V68_179 | No text annotation | ||
| IL_4V68_069 | No text annotation | ||
| IL_4V68_180 | No text annotation | ||
| IL_4V68_181 | No text annotation | ||
| IL_4V68_070 | tSH-tHW-tHS | ||
| IL_4V68_071 | tSH-tHW-tHS-cWW | ||
| IL_4V68_182 | No text annotation | ||
| IL_4V68_089 | Isolated cWS basepair | ||
| IL_4V68_099 | No text annotation | ||
| IL_4V68_108 | C-loop with extra cWW pair | ||
| IL_4V68_185 | No text annotation | ||
| IL_4V68_187 | No text annotation | ||
| IL_4V68_167 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V68_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_4V68_027 | 1/AA/46:52, 1/AA/359:367, 1/AA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4V68_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation | geometric J3_4LFB_011 J3_56052.5 | |
| J3_4V68_028 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4V68_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_4V68_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4V68_005 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4V68_029 | 1/AA/941:946, 1/AA/1235:1237, 1/AA/1337:1342 | No text annotation | ||
| J3_4V68_006 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_4V68_007 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4V68_008 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4V68_030 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4V68_009 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4V68_010 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation | homologous J3_5J7L_009 J3_76043.3 | |
| J3_4V68_011 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4V68_012 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4V68_013 | 1/BA/30:31, 1/BA/474:481, 1/BA/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_4V68_031 | 1/BA/30:31, 1/BA/474:484, 1/BA/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_4V68_032 | 1/BA/32:35, 1/BA/445:461, 1/BA/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_4V68_014 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_4V68_039 | 1/BA/269:271B, 1/BA/271V:272B, 1/BA/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4V68_033 | 1/BA/297:301, 1/BA/316:325, 1/BA/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_4V68_016 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_4V68_017 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V68_018 | 1/BA/1055:1057, 1/BA/1081:1087, 1/BA/1102:1104 | No text annotation | ||
| J3_4V68_034 | 1/BA/1055:1057, 1/BA/1081:1091, 1/BA/1100:1104 | No text annotation | ||
| J3_4V68_019 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4V68_020 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V68_021 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_4V68_035 | 1/BA/1424:1429, 1/BA/1564:1565, 1/BA/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_4V68_022 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V68_036 | 1/BA/2282:2284, 1/BA/2384:2395, 1/BA/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_4V68_023 | 1/BA/2295:2297, 1/BA/2321:2323, 1/BA/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V68_024 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4V68_025 | 1/BA/2814:2815, 1/BA/2831:2836, 1/BA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V68_026 | 1/BB/11:16, 1/BB/68:69, 1/BB/108:110 | No text annotation | homologous J3_7RQB_015 NA | |
| J4_4V68_001 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4V68_002 | 1/AA/142:144, 1/AA/178:183, 1/AA/194:198, 1/AA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V68_003 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4V68_004 | 1/AV/7:10, 1/AV/25:27, 1/AV/43:49, 1/AV/65:66 | tRNA junction | homologous J4_4TUE_004 J4_70449.27 | |
| J4_4V68_018 | 1/AW/7:10, 1/AW/25:27, 1/AW/43:49, 1/AW/65:66 | No text annotation | homologous J4_4WT8_031 NA | |
| J4_4V68_006 | 1/AY/7:10, 1/AY/25:27, 1/AY/43:49, 1/AY/65:66 | No text annotation | ||
| J4_4V68_007 | 1/BA/268:269, 1/BA/370:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4V68_008 | 1/BA/297:301, 1/BA/316:319, 1/BA/323:325, 1/BA/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_4V68_009 | 1/BA/601:604, 1/BA/624:628, 1/BA/635:638, 1/BA/650:656 | No text annotation | ||
| J4_4V68_010 | 1/BA/1270:1276, 1/BA/1294:1295, 1/BA/1645:1648, 1/BA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_4V68_011 | 1/BA/1310:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1604 | No text annotation | homologous J4_4WF9_005 J4_69051.6 | |
| J4_4V68_012 | 1/BA/1313:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_4V68_013 | 1/BA/1444:1445, 1/BA/1466:1467, 1/BA/1525:1526, 1/BA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4V68_014 | 1/BA/1772:1776, 1/BA/1788:1792, 1/BA/1827:1830, 1/BA/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4V68_015 | 1/BA/1833:1835, 1/BA/1905:1906, 1/BA/1924:1933, 1/BA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V68_016 | 1/BA/2285:2289, 1/BA/2343:2347, 1/BA/2370:2372, 1/BA/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_4V68_017 | 1/BA/2643:2646, 1/BA/2674:2676, 1/BA/2731:2735, 1/BA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J5_4V68_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V68_010 | 1/AA/57:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:355 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_4V68_003 | 1/BA/47:54, 1/BA/116:121, 1/BA/130:131, 1/BA/148:150, 1/BA/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_4V68_011 | 1/BA/268:271B, 1/BA/271V:272B, 1/BA/366:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | ||
| J5_4V68_004 | 1/BA/268:271, 1/BA/271:272, 1/BA/366:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | ||
| J5_4V68_005 | 1/BA/531:533, 1/BA/560:564, 1/BA/577:579, 1/BA/1261:1262, 1/BA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4V68_006 | 1/BA/584:589, 1/BA/668:671, 1/BA/809:812, 1/BA/1195:1196, 1/BA/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_4V68_007 | 1/BA/1674:1682, 1/BA/1706:1707, 1/BA/1751:1752, 1/BA/1756:1764, 1/BA/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_4V68_008 | 1/BA/2057:2064, 1/BA/2446:2453, 1/BA/2500:2507, 1/BA/2582:2588, 1/BA/2606:2611 | No text annotation | ||
| J5_4V68_009 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2282, 1/BA/2427:2435 | No text annotation | homologous J5_7A0S_007 J5_39529.1 | |
| J6_4V68_001 | 1/BA/44:45, 1/BA/179:183, 1/BA/214:224, 1/BA/231:235, 1/BA/262:266, 1/BA/426:433 | No text annotation | ||
| J6_4V68_002 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2284, 1/BA/2384:2395, 1/BA/2421:2435 | No text annotation | ||
| J7_4V68_001 | 1/BA/817:822, 1/BA/835:836, 1/BA/943:946, 1/BA/971:976, 1/BA/987:991, 1/BA/1163:1164, 1/BA/1185:1190 | No text annotation | ||
| J8_4V68_001 | 1/BA/7:15, 1/BA/525:531, 1/BA/2018:2023, 1/BA/2040:2043, 1/BA/2625:2630, 1/BA/2788:2792, 1/BA/2804:2811, 1/BA/2889:2896 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V68_015 | No text annotation | ||
| J3_4V68_037 | No text annotation | ||
| J3_4V68_038 | No text annotation | ||
| J4_4V68_005 | tRNA junction | ||
| J5_4V68_002 | No text annotation |
Coloring options: