Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V68_0011/AA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4V68_0021/AA/77:92No text annotation
Not in a motif group
HL_4V68_0031/AA/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.2
HL_4V68_0041/AA/189C:189HNo text annotation
Not in a motif group
homologous
HL_6CZR_075
HL_10278.1
HL_4V68_0051/AA/201:216No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_91104.1
HL_4V68_0061/AA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4V68_0071/AA/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.2
HL_4V68_0081/AA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4V68_0091/AA/342:347No text annotation
Not in a motif group
homologous
HL_6CZR_080
HL_03562.2
HL_4V68_0101/AA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.2
HL_4V68_0111/AA/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_4V68_0121/AA/457:474No text annotation
Not in a motif group
HL_4V68_0131/AA/522:527No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_4V68_0141/AA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_4V68_0151/AA/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_4V68_0161/AA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_4V68_0171/AA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4V68_0181/AA/838:848No text annotation
Not in a motif group
homologous
HL_4LFB_018
HL_38927.2
HL_4V68_0191/AA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.2
HL_4V68_0201/AA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.2
HL_4V68_0211/AA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V68_0221/AA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.2
HL_4V68_0231/AA/1076:1081GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.2
HL_4V68_0241/AA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V68_0251/AA/1127:1145No text annotation
Not in a motif group
HL_4V68_0261/AA/1163:1173No text annotation
Not in a motif group
HL_4V68_0271/AA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.2
HL_4V68_0281/AA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4V68_0291/AA/1356:1366No text annotation
Not in a motif group
HL_4V68_0301/AA/1445:1457UNCG
Not in a motif group
homologous
HL_4LFB_031
HL_03562.2
HL_4V68_0311/AA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V68_0321/AV/13:22No text annotation
Not in a motif group
homologous
HL_5B63_003
HL_25462.2
HL_4V68_0331/AV/31:39No text annotation
Not in a motif group
homologous
HL_5E81_212
NA
HL_4V68_0341/AV/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5AH5_008
HL_22280.1
HL_4V68_0361/AW/30:40No text annotation
Not in a motif group
homologous
HL_4V7M_039
HL_36684.1
HL_4V68_0371/AW/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_6PMO_005
HL_22280.1
HL_4V68_0381/AY/13:22No text annotation
Not in a motif group
homologous
HL_6ORD_035
HL_14843.1
HL_4V68_0391/AY/29:41No text annotation
Not in a motif group
homologous
HL_6GSL_221
HL_06285.2
HL_4V68_0401/AY/53:61No text annotation
Not in a motif group
homologous
HL_6CFJ_108
NA
HL_4V68_0411/BA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4V68_0421/BA/87:95No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_4V68_0431/BA/123:128No text annotation
Not in a motif group
homologous
HL_7RQB_003
HL_75407.1
HL_4V68_0441/BA/139:142ANo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.3
HL_4V68_0451/BA/154:172No text annotation
Not in a motif group
HL_4V68_0461/BA/194:201No text annotation
Not in a motif group
homologous
HL_5J7L_139
HL_06192.2
HL_4V68_0471/BA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_4V68_0481/BA/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_4V68_0491/BA/271I:271ONo text annotation
Not in a motif group
HL_4V68_0501/BA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_4V68_0511/BA/319:323No text annotation
Not in a motif group
homologous
HL_7A0S_011
HL_75407.1
HL_4V68_0521/BA/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.9
HL_4V68_0531/BA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_4V68_0541/BA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4V68_0551/BA/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.2
HL_4V68_0561/BA/487:493GNRA
Not in a motif group
homologous
HL_4WF9_016
HL_42097.2
HL_4V68_0571/BA/542:551No text annotation
Not in a motif group
homologous
HL_7RQB_017
NA
HL_4V68_0581/BA/566:575No text annotation
Not in a motif group
geometric
HL_7RQB_018
HL_89380.2
HL_4V68_0591/BA/612:615No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_4V68_0601/BA/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.2
HL_4V68_0611/BA/641:647No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_42097.2
HL_4V68_0621/BA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4V68_0631/BA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_4V68_0641/BA/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_27930.1
HL_4V68_0651/BA/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_4V68_0661/BA/882:894No text annotation
Not in a motif group
HL_4V68_0671/BA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.2
HL_4V68_0681/BA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_4V68_0691/BA/1062:1076No text annotation
Not in a motif group
HL_4V68_0701/BA/1092:1099No text annotation
Not in a motif group
HL_4V68_0711/BA/1170:1179No text annotation
Not in a motif group
HL_4V68_0721/BA/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.2
HL_4V68_0731/BA/1281:1289No text annotation
Not in a motif group
homologous
HL_7A0S_032
HL_89380.2
HL_4V68_0741/BA/1324:1330No text annotation
Not in a motif group
geometric
HL_7RQB_034
HL_46680.1
HL_4V68_0751/BA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_4V68_0761/BA/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_4V68_0771/BA/1450A:1461No text annotation
Not in a motif group
HL_4V68_0781/BA/1492:1498No text annotation
Not in a motif group
HL_4V68_0791/BA/1526:1546No text annotation
Not in a motif group
HL_4V68_0801/BA/1565:1568No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.2
HL_4V68_0811/BA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V68_0821/BA/1631:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_4V68_0831/BA/1691:1696UNCG
Not in a motif group
geometric
HL_5J7L_175
HL_03562.2
HL_4V68_0841/BA/1718:1744No text annotation
Not in a motif group
HL_4V68_0851/BA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4V68_0861/BA/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_4V68_0871/BA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.2
HL_4V68_0881/BA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.2
HL_4V68_0891/BA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V68_0901/BA/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_4V68_0911/BA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4V68_0921/BA/2143:2148No text annotation
Not in a motif group
geometric
HL_3OXE_002
HL_42097.2
HL_4V68_0931/BA/2205:2219No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_4V68_0941/BA/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_4V68_0951/BA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_4V68_0961/BA/2303:2313No text annotation
Not in a motif group
HL_4V68_0971/BA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_4V68_0981/BA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_4V68_0991/BA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.2
HL_4V68_1001/BA/2404:2413No text annotation
Not in a motif group
homologous
HL_4WF9_055
HL_30784.2
HL_4V68_1011/BA/2471:2479No text annotation
Not in a motif group
homologous
HL_7RQB_060
HL_06192.2
HL_4V68_1021/BA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_91104.1
HL_4V68_1031/BA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V68_1041/BA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.2
HL_4V68_1051/BA/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_42097.2
HL_4V68_1061/BA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_4V68_1071/BA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_4V68_1081/BA/2792:2804No text annotation
Not in a motif group
HL_4V68_1091/BA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_4V68_1101/BA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.2
HL_4V68_1111/BB/38:44No text annotation
Not in a motif group
geometric
HL_4V9F_003
HL_52841.1
HL_4V68_1121/BB/86:91No text annotation
Not in a motif group
homologous
HL_7A0S_070
HL_42097.2

Problematic loops

#loop idProblemSequence
HL_4V68_035No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V68_0011/AA/30:32,
1/AA/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.3
IL_4V68_0021/AA/44:45,
1/AA/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.3
IL_4V68_0031/AA/47:52,
1/AA/359:361
No text annotation
Not in a motif group
geometric
IL_4LFB_003
IL_11178.1
IL_4V68_0041/AA/54:56,
1/AA/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_4V68_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_4V68_0061/AA/67:69,
1/AA/100:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_4V68_0071/AA/129:131,
1/AA/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_4V68_0081/AA/132:136,
1/AA/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_4V68_0091/AA/147:153,
1/AA/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_4V68_0101/AA/186:188,
1/AA/189L:191
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_95997.1
IL_4V68_0111/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_4V68_0121/AA/249:253,
1/AA/273:275
No text annotation
Not in a motif group
homologous
IL_6CZR_124
IL_38684.1
IL_4V68_0131/AA/292:293,
1/AA/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_4V68_0141/AA/367:369,
1/AA/392:393
Single bulged U
Not in a motif group
geometric
IL_5J7L_017
IL_83039.14
IL_4V68_0151/AA/371:375,
1/AA/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_4V68_0161/AA/375:376,
1/AA/387:389
Single bulged G
Not in a motif group
geometric
IL_4LFB_016
IL_00225.3
IL_4V68_0171/AA/409:416,
1/AA/427:433
No text annotation
Not in a motif group
IL_4V68_0181/AA/446:450,
1/AA/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4LFB_018
IL_88269.3
IL_4V68_0191/AA/450:456,
1/AA/475:483
No text annotation
Not in a motif group
geometric
IL_6CZR_131
IL_30149.1
IL_4V68_0201/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_4V68_0211/AA/515:521,
1/AA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V68_0221/AA/569:575,
1/AA/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_4V68_0231/AA/580:584,
1/AA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_4V68_0241/AA/594:596,
1/AA/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.2
IL_4V68_0251/AA/597:598,
1/AA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_4V68_0261/AA/604:612,
1/AA/628:634
No text annotation
Not in a motif group
IL_4V68_0271/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_4V68_0281/AA/657:658,
1/AA/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.2
IL_4V68_0291/AA/662:666,
1/AA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_4V68_0301/AA/673:678,
1/AA/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_4V68_0311/AA/683:688,
1/AA/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_4V68_0321/AA/774:778,
1/AA/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_4V68_0331/AA/779:784,
1/AA/798:803
tSH-tHW-tHS-cWW
Not in a motif group
geometric
IL_3LQX_002
IL_76308.4
IL_4V68_0341/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4V68_0351/AA/922:923,
1/AA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.3
IL_4V68_0361/AA/925:927,
1/AA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.3
IL_4V68_0371/AA/933:935,
1/AA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_4V68_0381/AA/953:954,
1/AA/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.2
IL_4V68_0391/AA/993:997,
1/AA/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_4LFB_039
IL_47078.1
IL_4V68_0401/AA/1000:1002,
1/AA/1039:1041
No text annotation
Not in a motif group
IL_4V68_0411/AA/1002:1007,
1/AA/1022:1039
No text annotation
Not in a motif group
IL_4V68_0421/AA/1048:1050,
1/AA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.14
IL_4V68_0431/AA/1052:1056,
1/AA/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_4V68_0441/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_4LFB_045
IL_93353.1
IL_4V68_0451/AA/1060:1061,
1/AA/1195:1197
Single bulged U
Not in a motif group
geometric
IL_6CZR_156
IL_83039.14
IL_4V68_0461/AA/1061:1063,
1/AA/1193:1195
No text annotation
Not in a motif group
homologous
IL_4LFB_047
IL_95997.1
IL_4V68_0471/AA/1124:1127,
1/AA/1145:1149
No text annotation
Not in a motif group
IL_4V68_0481/AA/1246:1253,
1/AA/1284:1291
No text annotation
Not in a motif group
IL_4V68_0491/AA/1255:1258,
1/AA/1277:1282
No text annotation
Not in a motif group
IL_4V68_0501/AA/1259:1262,
1/AA/1273:1276
Double sheared
Not in a motif group
geometric
IL_5J7L_256
IL_09705.9
IL_4V68_0511/AA/1303:1308,
1/AA/1329:1334
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_4V68_0521/AA/1399:1401,
1/AA/1501:1504
No text annotation
Not in a motif group
homologous
IL_4LFB_056
NA
IL_4V68_0531/AA/1401:1404,
1/AA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4V68_0541/AA/1405:1407,
1/AA/1494:1496
UU cWW
Not in a motif group
geometric
IL_1ZZ5_002
IL_51629.2
IL_4V68_0551/AA/1407:1409,
1/AA/1491:1494
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_4V68_0561/AA/1412:1414,
1/AA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_4V68_0571/AA/1416:1419,
1/AA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_4V68_0581/AA/1431:1435,
1/AA/1466:1469
UAA/GAN variation
Not in a motif group
homologous
IL_4LFB_062
IL_07235.1
IL_4V68_0591/AA/1435:1437,
1/AA/1464:1466
No text annotation
Not in a motif group
geometric
IL_4LFB_063
IL_95997.1
IL_4V68_0601/AA/1440:1443,
1/AA/1459:1461
No text annotation
Not in a motif group
homologous
IL_4LFB_064
IL_92788.2
IL_4V68_0611/BA/24:30,
1/BA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_7RQB_001
IL_66414.6
IL_4V68_0621/BA/36:37,
1/BA/442:444
Single bulged A
Not in a motif group
homologous
IL_7A0S_002
IL_37497.3
IL_4V68_0631/BA/42:43,
1/BA/434:436
Minor groove platform
Not in a motif group
homologous
IL_7RQB_003
IL_42622.2
IL_4V68_0641/BA/81:85,
1/BA/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_4V68_0651/BA/183:184,
1/BA/212:214
Single stack bend
Not in a motif group
homologous
IL_7RQB_005
IL_76488.2
IL_4V68_0661/BA/188:194,
1/BA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7RQB_006
IL_04346.7
IL_4V68_0671/BA/239:245,
1/BA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_4V68_0681/BA/272D:272E,
1/BA/363E:364
No text annotation
Not in a motif group
IL_4V68_0691/BA/272I:279,
1/BA/361:363A
No text annotation
Not in a motif group
IL_4V68_0701/BA/280:285,
1/BA/356:360
tSH-tHW-tHS
Not in a motif group
geometric
IL_2QWY_007
IL_38862.1
IL_4V68_0711/BA/285:290,
1/BA/350:356
tSH-tHW-tHS-cWW
Not in a motif group
geometric
IL_6DVK_004
IL_76308.4
IL_4V68_0721/BA/293:295,
1/BA/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_4V68_0731/BA/481:484,
1/BA/496:509
No text annotation
Not in a motif group
homologous
IL_7RQB_014
IL_60992.6
IL_4V68_0741/BA/564:566,
1/BA/575:577
No text annotation
Not in a motif group
homologous
IL_7RQB_015
IL_95997.1
IL_4V68_0751/BA/606:610,
1/BA/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_4WF9_019
IL_17136.1
IL_4V68_0761/BA/672:674,
1/BA/806:808
No text annotation
Not in a motif group
homologous
IL_7RQB_017
IL_95997.1
IL_4V68_0771/BA/674:678,
1/BA/799:806
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_4WF9_021
IL_17470.6
IL_4V68_0781/BA/697:698,
1/BA/763:765
Single bulged A
Not in a motif group
homologous
IL_7RQB_019
IL_37497.3
IL_4V68_0791/BA/702:703,
1/BA/728:730
Single bulged G
Not in a motif group
homologous
IL_7RQB_020
IL_00225.3
IL_4V68_0801/BA/703:707,
1/BA/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_4V68_0811/BA/738:741,
1/BA/756:758
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_022
IL_05564.2
IL_4V68_0821/BA/775:777,
1/BA/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_023
IL_90991.6
IL_4V68_0831/BA/837:838,
1/BA/940:942
Single stack bend
Not in a motif group
homologous
IL_7A0S_022
IL_92001.1
IL_4V68_0841/BA/844:846,
1/BA/931:934
Intercalated cWW
Not in a motif group
geometric
IL_7RQB_025
IL_52767.2
IL_4V68_0851/BA/846:850,
1/BA/927:931
No text annotation
Not in a motif group
homologous
IL_7RQB_026
IL_94165.1
IL_4V68_0861/BA/858:862,
1/BA/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7RQB_027
IL_38862.1
IL_4V68_0871/BA/862:863,
1/BA/913:915
Minor groove platform
Not in a motif group
homologous
IL_4WF9_032
IL_42622.2
IL_4V68_0881/BA/864:868,
1/BA/909:912
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_4V68_0891/BA/870:872,
1/BA/905:907
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_030
IL_52767.2
IL_4V68_0901/BA/875:882,
1/BA/894:902
No text annotation
Not in a motif group
IL_4V68_0911/BA/952:954,
1/BA/963:965
No text annotation
Not in a motif group
homologous
IL_7RQB_034
IL_95997.1
IL_4V68_0921/BA/994:996,
1/BA/1159:1160
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_4V68_0931/BA/998:1002,
1/BA/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_7RQB_036
IL_89002.2
IL_4V68_0941/BA/1004:1011,
1/BA/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_7RQB_037
IL_15861.7
IL_4V68_0951/BA/1011:1013,
1/BA/1149:1150
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.14
IL_4V68_0961/BA/1018:1024,
1/BA/1140:1144
No text annotation
Not in a motif group
homologous
IL_4WF9_039
IL_57188.3
IL_4V68_0971/BA/1024:1030,
1/BA/1124:1140
No text annotation
Not in a motif group
geometric
IL_7RQB_040
IL_50715.1
IL_4V68_0981/BA/1031:1034,
1/BA/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_4WF9_041
IL_82068.2
IL_4V68_0991/BA/1041:1052,
1/BA/1107:1114
No text annotation
Not in a motif group
IL_4V68_1001/BA/1059:1062,
1/BA/1076:1079
No text annotation
Not in a motif group
IL_4V68_1011/BA/1087:1091,
1/BA/1100:1102
Stack and bulge
Not in a motif group
geometric
IL_2O3X_001
IL_82842.2
IL_4V68_1021/BA/1196:1198,
1/BA/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_045
IL_52767.2
IL_4V68_1031/BA/1202:1206,
1/BA/1240:1243
No text annotation
Not in a motif group
homologous
IL_7RQB_046
IL_68574.2
IL_4V68_1041/BA/1208:1215,
1/BA/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_4V68_1051/BA/1219:1221,
1/BA/1229:1230
Single bulged A
Not in a motif group
homologous
IL_7RQB_048
IL_37497.3
IL_4V68_1061/BA/1262:1269,
1/BA/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_049
IL_04346.7
IL_4V68_1071/BA/1310:1313,
1/BA/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_4V68_1081/BA/1319:1324,
1/BA/1330:1333
C-loop with extra cWW pair
Not in a motif group
geometric
IL_4V88_408
IL_93630.2
IL_4V68_1091/BA/1351:1355,
1/BA/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_7RQB_052
IL_89002.2
IL_4V68_1101/BA/1357:1361,
1/BA/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_4WF9_052
IL_17136.1
IL_4V68_1111/BA/1415:1416,
1/BA/1582:1587
No text annotation
Not in a motif group
homologous
IL_7RQB_054
IL_67474.4
IL_4V68_1121/BA/1417:1421,
1/BA/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_4V68_1131/BA/1433:1435,
1/BA/1557:1560
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_056
IL_54997.7
IL_4V68_1141/BA/1437:1440,
1/BA/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_4V68_1151/BA/1448:1450,
1/BA/1462:1463
Single stack bend
Not in a motif group
homologous
IL_7RQB_058
IL_76488.2
IL_4V68_1161/BA/1469:1473,
1/BA/1518:1523
UAA/GAN
Not in a motif group
homologous
IL_7RQB_060
IL_07235.1
IL_4V68_1171/BA/1481:1485,
1/BA/1504:1510
No text annotation
Not in a motif group
IL_4V68_1181/BA/1489:1491,
1/BA/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.3
IL_4V68_1191/BA/1651:1656,
1/BA/2004:2006
No text annotation
Not in a motif group
homologous
IL_7RQB_064
IL_12566.2
IL_4V68_1201/BA/1663:1665,
1/BA/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_7A0S_060
IL_54997.7
IL_4V68_1211/BA/1666:1669,
1/BA/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4WF9_064
IL_50694.2
IL_4V68_1221/BA/1669:1674,
1/BA/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_7RQB_067
IL_82842.2
IL_4V68_1231/BA/1686:1691,
1/BA/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_5J7L_308
IL_65969.2
IL_4V68_1241/BA/1770:1771,
1/BA/1980:1982
Single bulged A
Not in a motif group
homologous
IL_7RQB_069
IL_37497.3
IL_4V68_1251/BA/1798:1804,
1/BA/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_4V68_1261/BA/1837:1840,
1/BA/1902:1903
No text annotation
Not in a motif group
IL_4V68_1271/BA/1841:1842,
1/BA/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_4V68_1281/BA/1846:1849,
1/BA/1893:1894
Minor groove platform
Not in a motif group
homologous
IL_7RQB_073
IL_88739.1
IL_4V68_1291/BA/1851:1855,
1/BA/1887:1891
UAA/GAN with extra pair
Not in a motif group
homologous
IL_4WF9_073
IL_90318.1
IL_4V68_1301/BA/1856:1860,
1/BA/1882:1886
Triple sheared
Not in a motif group
homologous
IL_7RQB_075
IL_56467.8
IL_4V68_1311/BA/1933:1934,
1/BA/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_318
IL_59677.2
IL_4V68_1321/BA/1934:1945,
1/BA/1961:1964
No text annotation
Not in a motif group
homologous
IL_4WF9_077
IL_81589.2
IL_4V68_1331/BA/2050:2052,
1/BA/2617:2618
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.2
IL_4V68_1341/BA/2054:2057,
1/BA/2611:2615
No text annotation
Not in a motif group
IL_4V68_1351/BA/2067:2069,
1/BA/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7A0S_075
IL_83039.14
IL_4V68_1361/BA/2070:2071,
1/BA/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_4WF9_081
IL_42622.2
IL_4V68_1371/BA/2081:2083,
1/BA/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_082
IL_38958.7
IL_4V68_1381/BA/2085:2087,
1/BA/2232:2234
No text annotation
Not in a motif group
homologous
IL_7RQB_083
IL_95997.1
IL_4V68_1391/BA/2108:2110,
1/BA/2179:2181
No text annotation
Not in a motif group
homologous
IL_3U4M_001
IL_95997.1
IL_4V68_1401/BA/2110:2120,
1/BA/2178:2179
Multiple bulged bases
Not in a motif group
geometric
IL_1R3E_002
IL_59677.2
IL_4V68_1411/BA/2124:2127,
1/BA/2161:2174
No text annotation
Not in a motif group
IL_4V68_1421/BA/2129:2136,
1/BA/2155:2159
No text annotation
Not in a motif group
IL_4V68_1431/BA/2297:2299,
1/BA/2317:2321
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_088
IL_38958.7
IL_4V68_1441/BA/2350:2353,
1/BA/2364:2367
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.9
IL_4V68_1451/BA/2401:2403,
1/BA/2414:2415
Single bulged U
Not in a motif group
homologous
IL_4WF9_088
IL_83039.14
IL_4V68_1461/BA/2453:2454,
1/BA/2498:2500
Single stack bend
Not in a motif group
homologous
IL_7A0S_083
IL_76488.2
IL_4V68_1471/BA/2454:2455,
1/BA/2496:2498
Major groove platform
Not in a motif group
geometric
IL_7RQB_092
IL_27635.2
IL_4V68_1481/BA/2457:2459,
1/BA/2493:2494
Major groove platform
Not in a motif group
homologous
IL_4WF9_091
IL_27635.2
IL_4V68_1491/BA/2459:2461,
1/BA/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_7RQB_094
IL_92788.2
IL_4V68_1501/BA/2466:2470,
1/BA/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_4V68_1511/BA/2507:2508,
1/BA/2580:2582
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_4V68_1521/BA/2510:2512,
1/BA/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_7RQB_097
IL_90933.2
IL_4V68_1531/BA/2512:2513,
1/BA/2571:2574
No text annotation
Not in a motif group
homologous
IL_5J7L_341
IL_71530.2
IL_4V68_1541/BA/2522:2523,
1/BA/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_4WF9_097
IL_95601.3
IL_4V68_1551/BA/2591:2592,
1/BA/2601:2603
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.3
IL_4V68_1561/BA/2636:2640,
1/BA/2774:2782
tSH-tHS-tHW
Not in a motif group
homologous
IL_7RQB_102
IL_04638.1
IL_4V68_1571/BA/2652:2658,
1/BA/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_5J7L_346
IL_16458.1
IL_4V68_1581/BA/2680:2684,
1/BA/2725:2727
C-loop
Not in a motif group
homologous
IL_7RQB_104
IL_63596.6
IL_4V68_1591/BA/2687:2691,
1/BA/2718:2722
No text annotation
Not in a motif group
homologous
IL_7RQB_105
IL_08296.3
IL_4V68_1601/BA/2695:2696,
1/BA/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_7A0S_097
IL_71530.2
IL_4V68_1611/BA/2737:2742,
1/BA/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_4V68_1621/BA/2838:2839,
1/BA/2878:2880
Single bulged C
Not in a motif group
homologous
IL_7RQB_108
IL_61258.12
IL_4V68_1631/BA/2843:2846,
1/BA/2870:2874
No text annotation
Not in a motif group
homologous
IL_7RQB_109
IL_58764.3
IL_4V68_1641/BA/2847:2852,
1/BA/2865:2869
No text annotation
Not in a motif group
homologous
IL_7RQB_110
IL_83162.5
IL_4V68_1651/BB/17:18,
1/BB/65:67
Major groove intercalation
Not in a motif group
homologous
IL_7RQB_111
IL_37497.3
IL_4V68_1661/BB/23:28,
1/BB/56:60
No text annotation
Not in a motif group
homologous
IL_7RQB_112
NA
IL_4V68_1671/BB/30:32,
1/BB/50:54
No text annotation
Not in a motif group
homologous
IL_4WF9_114
IL_10810.1
IL_4V68_1681/BB/34:38,
1/BB/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_7RQB_114
IL_58103.6
IL_4V68_1691/BB/71:79,
1/BB/98:106
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3

Problematic loops