7PJW Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_7PJW_001 | 1/A/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
HL_7PJW_002 | 1/A/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
HL_7PJW_003 | 1/A/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
HL_7PJW_004 | 1/A/137:142 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
HL_7PJW_005 | 1/A/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
HL_7PJW_006 | 1/A/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_06192.2 | |
HL_7PJW_007 | 1/A/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
HL_7PJW_008 | 1/A/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
HL_7PJW_009 | 1/A/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
HL_7PJW_010 | 1/A/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
HL_7PJW_011 | 1/A/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
HL_7PJW_012 | 1/A/410:417 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
HL_7PJW_013 | 1/A/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
HL_7PJW_014 | 1/A/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
HL_7PJW_015 | 1/A/544:549 | No text annotation Not in a motif group | ||
HL_7PJW_016 | 1/A/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_89380.2 | |
HL_7PJW_017 | 1/A/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
HL_7PJW_018 | 1/A/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
HL_7PJW_019 | 1/A/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_77805.2 | |
HL_7PJW_020 | 1/A/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
HL_7PJW_021 | 1/A/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
HL_7PJW_022 | 1/A/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
HL_7PJW_023 | 1/A/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
HL_7PJW_024 | 1/A/883:893 | No text annotation Not in a motif group | ||
HL_7PJW_025 | 1/A/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
HL_7PJW_026 | 1/A/978:985 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
HL_7PJW_027 | 1/A/1062:1076 | No text annotation Not in a motif group | ||
HL_7PJW_028 | 1/A/1092:1099 | No text annotation Not in a motif group | ||
HL_7PJW_029 | 1/A/1169:1180 | No text annotation Not in a motif group | ||
HL_7PJW_030 | 1/A/1222:1227 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
HL_7PJW_031 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
HL_7PJW_032 | 1/A/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
HL_7PJW_033 | 1/A/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
HL_7PJW_034 | 1/A/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
HL_7PJW_035 | 1/A/1451:1459 | No text annotation Not in a motif group | homologous HL_5J7L_169 HL_53837.1 | |
HL_7PJW_036 | 1/A/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
HL_7PJW_037 | 1/A/1533:1538 | No text annotation Not in a motif group | geometric HL_7RQB_011 HL_75407.1 | |
HL_7PJW_038 | 1/A/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
HL_7PJW_039 | 1/A/1612:1619 | No text annotation Not in a motif group | ||
HL_7PJW_040 | 1/A/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
HL_7PJW_041 | 1/A/1691:1696 | UNCG Not in a motif group | geometric HL_4LFB_011 HL_03562.2 | |
HL_7PJW_042 | 1/A/1728:1731 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
HL_7PJW_043 | 1/A/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
HL_7PJW_044 | 1/A/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
HL_7PJW_045 | 1/A/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
HL_7PJW_046 | 1/A/1868:1873 | GNRA Not in a motif group | geometric HL_6JDV_002 HL_42097.1 | |
HL_7PJW_048 | 1/A/1949:1957 | No text annotation Not in a motif group | homologous HL_4WF9_046 HL_51824.1 | |
HL_7PJW_049 | 1/A/2027:2036 | No text annotation Not in a motif group | ||
HL_7PJW_050 | 1/A/2105:2184 | No text annotation Not in a motif group | ||
HL_7PJW_051 | 1/A/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
HL_7PJW_052 | 1/A/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
HL_7PJW_053 | 1/A/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
HL_7PJW_054 | 1/A/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
HL_7PJW_055 | 1/A/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
HL_7PJW_056 | 1/A/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
HL_7PJW_057 | 1/A/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
HL_7PJW_058 | 1/A/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
HL_7PJW_059 | 1/A/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
HL_7PJW_060 | 1/A/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
HL_7PJW_061 | 1/A/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
HL_7PJW_062 | 1/A/2594:2599 | No text annotation Not in a motif group | homologous HL_7A0S_062 HL_42097.1 | |
HL_7PJW_063 | 1/A/2658:2663 | No text annotation Not in a motif group | homologous HL_7RQB_064 HL_42097.1 | |
HL_7PJW_064 | 1/A/2700:2707 | No text annotation Not in a motif group | geometric HL_3R4F_002 HL_35015.1 | |
HL_7PJW_065 | 1/A/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
HL_7PJW_066 | 1/A/2796:2799 | No text annotation Not in a motif group | geometric HL_5U30_001 HL_53837.1 | |
HL_7PJW_067 | 1/A/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
HL_7PJW_068 | 1/A/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
HL_7PJW_069 | 1/B/38:44 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_87939.1 | |
HL_7PJW_070 | 1/B/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
HL_7PJW_071 | 1/a/12:22 | No text annotation Not in a motif group | ||
HL_7PJW_072 | 1/a/78:91 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
HL_7PJW_073 | 1/a/158:163 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
HL_7PJW_074 | 1/a/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
HL_7PJW_075 | 1/a/207:212 | No text annotation Not in a motif group | ||
HL_7PJW_076 | 1/a/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
HL_7PJW_077 | 1/a/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
HL_7PJW_078 | 1/a/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
HL_7PJW_079 | 1/a/342:347 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_03562.2 | |
HL_7PJW_080 | 1/a/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
HL_7PJW_081 | 1/a/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
HL_7PJW_082 | 1/a/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
HL_7PJW_083 | 1/a/521:528 | No text annotation Not in a motif group | homologous HL_4LFB_013 NA | |
HL_7PJW_084 | 1/a/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7PJW_047 | No text annotation | ||
HL_7PJW_085 | No text annotation | ||
HL_7PJW_086 | Other HL | ||
HL_7PJW_087 | No text annotation | ||
HL_7PJW_088 | No text annotation | ||
HL_7PJW_089 | GNRA | ||
HL_7PJW_090 | GNRA | ||
HL_7PJW_091 | No text annotation | ||
HL_7PJW_092 | GNRA | ||
HL_7PJW_093 | GNRA | ||
HL_7PJW_094 | No text annotation | ||
HL_7PJW_095 | No text annotation | ||
HL_7PJW_096 | No text annotation | ||
HL_7PJW_097 | GNRA | ||
HL_7PJW_098 | No text annotation | ||
HL_7PJW_099 | No text annotation | ||
HL_7PJW_100 | UNCG | ||
HL_7PJW_101 | No text annotation | ||
HL_7PJW_102 | No text annotation | ||
HL_7PJW_103 | tRNA anticodon loop | ||
HL_7PJW_104 | No text annotation | ||
HL_7PJW_105 | No text annotation | ||
HL_7PJW_106 | No text annotation | ||
HL_7PJW_107 | T-loop with 2 stacked bulged bases |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_7PJW_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_4WF9_001 IL_66414.6 | |
IL_7PJW_002 | 1/A/36:37, 1/A/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
IL_7PJW_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
IL_7PJW_004 | 1/A/81:85, 1/A/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
IL_7PJW_005 | 1/A/183:184, 1/A/212:214 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_76488.2 | |
IL_7PJW_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
IL_7PJW_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
IL_7PJW_008 | 1/A/269:271, 1/A/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
IL_7PJW_009 | 1/A/274:281, 1/A/359:363 | No text annotation Not in a motif group | ||
IL_7PJW_010 | 1/A/293:295, 1/A/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
IL_7PJW_011 | 1/A/481:484, 1/A/496:509 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.6 | |
IL_7PJW_012 | 1/A/536:539, 1/A/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
IL_7PJW_013 | 1/A/564:566, 1/A/575:577 | No text annotation Not in a motif group | homologous IL_7A0S_011 IL_95997.1 | |
IL_7PJW_014 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
IL_7PJW_015 | 1/A/672:674, 1/A/806:808 | No text annotation Not in a motif group | homologous IL_4WF9_020 IL_95997.1 | |
IL_7PJW_016 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_5J7L_260 IL_17470.6 | |
IL_7PJW_017 | 1/A/697:698, 1/A/763:765 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.2 | |
IL_7PJW_018 | 1/A/702:703, 1/A/728:730 | Single bulged G Not in a motif group | homologous IL_7A0S_017 IL_00225.2 | |
IL_7PJW_019 | 1/A/703:707, 1/A/724:728 | Triple sheared Not in a motif group | geometric IL_5J7L_263 IL_56467.8 | |
IL_7PJW_020 | 1/A/738:740, 1/A/757:758 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.1 | |
IL_7PJW_021 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
IL_7PJW_022 | 1/A/837:838, 1/A/940:942 | Single stack bend Not in a motif group | homologous IL_7A0S_022 IL_92001.1 | |
IL_7PJW_023 | 1/A/844:847, 1/A/933:934 | Other IL Not in a motif group | homologous IL_5J7L_267 IL_92001.1 | |
IL_7PJW_024 | 1/A/847:848, 1/A/930:933 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
IL_7PJW_025 | 1/A/850:851, 1/A/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
IL_7PJW_026 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
IL_7PJW_027 | 1/A/862:863, 1/A/913:915 | Single bulged G Not in a motif group | homologous IL_5J7L_271 IL_00225.2 | |
IL_7PJW_028 | 1/A/864:868, 1/A/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
IL_7PJW_029 | 1/A/870:872, 1/A/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
IL_7PJW_030 | 1/A/875:879, 1/A/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
IL_7PJW_031 | 1/A/880:881, 1/A/895:897 | Single bulged A Not in a motif group | geometric IL_3V7E_001 IL_37497.2 | |
IL_7PJW_032 | 1/A/994:996, 1/A/1159:1160 | Single bulged C Not in a motif group | homologous IL_7A0S_032 IL_61258.12 | |
IL_7PJW_033 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
IL_7PJW_034 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4WF9_037 IL_15861.7 | |
IL_7PJW_035 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
IL_7PJW_036 | 1/A/1018:1024, 1/A/1140:1144 | No text annotation Not in a motif group | homologous IL_7RQB_039 IL_57188.3 | |
IL_7PJW_037 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
IL_7PJW_038 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
IL_7PJW_039 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
IL_7PJW_040 | 1/A/1043:1053, 1/A/1106:1112 | No text annotation Not in a motif group | ||
IL_7PJW_041 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
IL_7PJW_042 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
IL_7PJW_043 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
IL_7PJW_044 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
IL_7PJW_045 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
IL_7PJW_046 | 1/A/1319:1323, 1/A/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
IL_7PJW_047 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
IL_7PJW_048 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
IL_7PJW_049 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
IL_7PJW_050 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
IL_7PJW_051 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
IL_7PJW_052 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
IL_7PJW_053 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.13 | |
IL_7PJW_054 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
IL_7PJW_055 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
IL_7PJW_056 | 1/A/1481:1482, 1/A/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.4 | |
IL_7PJW_057 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
IL_7PJW_058 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
IL_7PJW_059 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
IL_7PJW_060 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
IL_7PJW_061 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
IL_7PJW_062 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
IL_7PJW_063 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
IL_7PJW_064 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
IL_7PJW_065 | 1/A/1720:1725, 1/A/1735:1740 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7A0S_018 IL_86929.2 | |
IL_7PJW_066 | 1/A/1727:1728, 1/A/1731:1733 | Single bulged C Not in a motif group | homologous IL_5J7L_311 IL_61258.12 | |
IL_7PJW_067 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
IL_7PJW_068 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7A0S_065 IL_17069.3 | |
IL_7PJW_069 | 1/A/1837:1840, 1/A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
IL_7PJW_070 | 1/A/1841:1842, 1/A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
IL_7PJW_071 | 1/A/1846:1849, 1/A/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
IL_7PJW_072 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
IL_7PJW_073 | 1/A/1933:1934, 1/A/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7A0S_071 IL_59677.2 | |
IL_7PJW_074 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation Not in a motif group | geometric IL_7A0S_072 IL_81589.2 | |
IL_7PJW_075 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
IL_7PJW_076 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
IL_7PJW_077 | 1/A/2064:2066, 1/A/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
IL_7PJW_078 | 1/A/2067:2070, 1/A/2441:2443 | No text annotation Not in a motif group | homologous IL_5J7L_323 NA | |
IL_7PJW_079 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform Not in a motif group | geometric IL_7A0S_076 IL_42622.2 | |
IL_7PJW_080 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
IL_7PJW_081 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation Not in a motif group | homologous IL_7A0S_078 IL_95997.1 | |
IL_7PJW_082 | 1/A/2100:2105, 1/A/2184:2189 | No text annotation Not in a motif group | ||
IL_7PJW_083 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
IL_7PJW_084 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared Not in a motif group | homologous IL_4WF9_087 IL_09705.9 | |
IL_7PJW_085 | 1/A/2401:2403, 1/A/2414:2415 | Single bulged U Not in a motif group | homologous IL_4WF9_088 IL_83039.13 | |
IL_7PJW_086 | 1/A/2453:2455, 1/A/2496:2500 | No text annotation Not in a motif group | homologous IL_5J7L_335 NA | |
IL_7PJW_087 | 1/A/2456:2459, 1/A/2493:2495 | No text annotation Not in a motif group | homologous IL_5J7L_336 NA | |
IL_7PJW_088 | 1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_337 IL_92788.2 | |
IL_7PJW_089 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
IL_7PJW_090 | 1/A/2507:2509, 1/A/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
IL_7PJW_091 | 1/A/2510:2513, 1/A/2571:2578 | No text annotation Not in a motif group | ||
IL_7PJW_092 | 1/A/2522:2523, 1/A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7A0S_091 IL_95601.3 | |
IL_7PJW_093 | 1/A/2588:2591, 1/A/2603:2606 | No text annotation Not in a motif group | homologous IL_5J7L_343 NA | |
IL_7PJW_094 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A Not in a motif group | geometric IL_1U9S_001 IL_37497.2 | |
IL_7PJW_095 | 1/A/2636:2640, 1/A/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
IL_7PJW_096 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7A0S_094 IL_16458.1 | |
IL_7PJW_097 | 1/A/2680:2684, 1/A/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
IL_7PJW_098 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
IL_7PJW_099 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
IL_7PJW_100 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
IL_7PJW_101 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
IL_7PJW_102 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
IL_7PJW_103 | 1/A/2838:2840, 1/A/2877:2880 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
IL_7PJW_104 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
IL_7PJW_105 | 1/A/2847:2853, 1/A/2864:2869 | No text annotation Not in a motif group | ||
IL_7PJW_106 | 1/B/17:18, 1/B/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
IL_7PJW_107 | 1/B/23:28, 1/B/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
IL_7PJW_108 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
IL_7PJW_109 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_5J7L_358 IL_58103.6 | |
IL_7PJW_110 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
IL_7PJW_111 | 1/a/30:32, 1/a/552:553 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.2 | |
IL_7PJW_112 | 1/a/44:45, 1/a/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
IL_7PJW_113 | 1/a/47:52, 1/a/359:361 | No text annotation Not in a motif group | ||
IL_7PJW_114 | 1/a/54:56, 1/a/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
IL_7PJW_115 | 1/a/63:66, 1/a/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
IL_7PJW_116 | 1/a/67:69, 1/a/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
IL_7PJW_117 | 1/a/70:73, 1/a/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
IL_7PJW_118 | 1/a/75:76, 1/a/93:95 | No text annotation Not in a motif group | ||
IL_7PJW_119 | 1/a/128:131, 1/a/231:233 | No text annotation Not in a motif group | ||
IL_7PJW_120 | 1/a/132:136, 1/a/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
IL_7PJW_121 | 1/a/147:153, 1/a/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
IL_7PJW_122 | 1/a/203:206, 1/a/213:214 | No text annotation Not in a motif group | ||
IL_7PJW_123 | 1/a/242:247, 1/a/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
IL_7PJW_124 | 1/a/249:252, 1/a/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
IL_7PJW_125 | 1/a/292:293, 1/a/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
IL_7PJW_126 | 1/a/367:369, 1/a/392:393 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.13 | |
IL_7PJW_127 | 1/a/371:375, 1/a/389:390 | No text annotation Not in a motif group | ||
IL_7PJW_128 | 1/a/375:377, 1/a/386:389 | Single bulged G, near cWW Not in a motif group | geometric IL_6CZR_128 IL_52767.2 | |
IL_7PJW_129 | 1/a/408:416, 1/a/427:434 | No text annotation Not in a motif group | ||
IL_7PJW_130 | 1/a/440:442, 1/a/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
IL_7PJW_131 | 1/a/446:450, 1/a/483:488 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_88269.3 | |
IL_7PJW_132 | 1/a/450:455, 1/a/477:483 | No text annotation Not in a motif group | geometric IL_5J7L_023 IL_70801.1 | |
IL_7PJW_133 | 1/a/455:457, 1/a/475:477 | No text annotation Not in a motif group | geometric IL_1YZ9_002 IL_95997.1 | |
IL_7PJW_134 | 1/a/504:511, 1/a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
IL_7PJW_135 | 1/a/515:521, 1/a/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
IL_7PJW_136 | 1/a/569:575, 1/a/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
IL_7PJW_137 | 1/a/580:584, 1/a/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
IL_7PJW_138 | 1/a/594:596, 1/a/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
IL_7PJW_139 | 1/a/597:598, 1/a/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
IL_7PJW_140 | 1/a/605:612, 1/a/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
IL_7PJW_141 | 1/a/654:655, 1/a/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
IL_7PJW_142 | 1/a/659:660, 1/a/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_7PJW_143 | Tandem non-canonical cWW pairs | ||
IL_7PJW_144 | No text annotation | ||
IL_7PJW_145 | Kink-turn | ||
IL_7PJW_146 | Left turn | ||
IL_7PJW_147 | tSH-tHW-tHS | ||
IL_7PJW_148 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
IL_7PJW_149 | Single bulged A | ||
IL_7PJW_150 | Single bulged G | ||
IL_7PJW_151 | Minor groove platform | ||
IL_7PJW_152 | Minor groove platform | ||
IL_7PJW_153 | Minor groove platform | ||
IL_7PJW_154 | Single stack bend | ||
IL_7PJW_155 | No text annotation | ||
IL_7PJW_156 | Single bulged U | ||
IL_7PJW_157 | No text annotation | ||
IL_7PJW_158 | Minor groove platform | ||
IL_7PJW_159 | Single bulged A | ||
IL_7PJW_160 | No text annotation | ||
IL_7PJW_161 | No text annotation | ||
IL_7PJW_162 | Minor groove platform | ||
IL_7PJW_163 | No text annotation | ||
IL_7PJW_164 | No text annotation | ||
IL_7PJW_165 | No text annotation | ||
IL_7PJW_166 | Triple sheared | ||
IL_7PJW_167 | No text annotation | ||
IL_7PJW_168 | No text annotation | ||
IL_7PJW_169 | No text annotation | ||
IL_7PJW_170 | No text annotation | ||
IL_7PJW_171 | No text annotation | ||
IL_7PJW_172 | Triple sheared related | ||
IL_7PJW_173 | Minor groove platform | ||
IL_7PJW_174 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_7PJW_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation Not in a motif group | ||
J3_7PJW_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
J3_7PJW_003 | 1/A/297:301, 1/A/316:325, 1/A/337:341 | No text annotation Not in a motif group | ||
J3_7PJW_004 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
J3_7PJW_005 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation Not in a motif group | ||
J3_7PJW_006 | 1/A/1055:1062, 1/A/1076:1092, 1/A/1099:1104 | No text annotation Not in a motif group | ||
J3_7PJW_007 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
J3_7PJW_008 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
J3_7PJW_009 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
J3_7PJW_010 | 1/A/2090:2093, 1/A/2196:2200, 1/A/2223:2229 | No text annotation Not in a motif group | ||
J3_7PJW_011 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation Not in a motif group | ||
J3_7PJW_012 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
J3_7PJW_013 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
J3_7PJW_014 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
J3_7PJW_015 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA | |
J3_7PJW_016 | 1/a/46:47, 1/a/361:367, 1/a/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
J3_7PJW_017 | 1/a/586:588, 1/a/651:654, 1/a/754:755 | No text annotation Not in a motif group |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_7PJW_018 | No text annotation | ||
J3_7PJW_019 | No text annotation | ||
J3_7PJW_020 | No text annotation | ||
J3_7PJW_021 | No text annotation | ||
J3_7PJW_022 | No text annotation | ||
J3_7PJW_023 | No text annotation | ||
J3_7PJW_024 | No text annotation | ||
J3_7PJW_025 | No text annotation | ||
J3_7PJW_026 | No text annotation | ||
J3_7PJW_027 | No text annotation |
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