Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8EIU_0011/A/12:22No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_8EIU_0031/A/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.2
HL_8EIU_0041/A/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.2
HL_8EIU_0061/A/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_8EIU_0071/A/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.2
HL_8EIU_0081/A/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_8EIU_0091/A/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_8EIU_0101/A/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.2
HL_8EIU_0111/A/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_8EIU_0131/A/521:528No text annotation
Not in a motif group
homologous
HL_5J7L_013
NA
HL_8EIU_0141/A/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_8EIU_0161/A/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_8EIU_0181/A/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_42097.2
HL_8EIU_0191/A/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.2
HL_8EIU_0331/Y/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_5IBB_210
HL_53597.2
HL_8EIU_0341/Y/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4YYE_003
HL_22280.1
HL_8EIU_0361/Z/31:39No text annotation
Not in a motif group
homologous
HL_5E81_212
NA
HL_8EIU_0371/Z/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5WT1_003
HL_71309.1
HL_8EIU_0381/a/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_8EIU_0391/a/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_8EIU_0401/a/123:128No text annotation
Not in a motif group
homologous
HL_5J7L_136
HL_75407.1
HL_8EIU_0411/a/137:142No text annotation
Not in a motif group
geometric
HL_6QN3_001
HL_03562.2
HL_8EIU_0421/a/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_8EIU_0431/a/194:201No text annotation
Not in a motif group
geometric
HL_7RQB_006
HL_06192.2
HL_8EIU_0441/a/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_8EIU_0451/a/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_8EIU_0461/a/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_8EIU_0471/a/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_8EIU_0481/a/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.9
HL_8EIU_0491/a/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_8EIU_0501/a/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_8EIU_0511/a/462:467GNRA
Not in a motif group
homologous
HL_5J7L_147
HL_42097.2
HL_8EIU_0521/a/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.2
HL_8EIU_0531/a/544:549No text annotation
Not in a motif group
geometric
HL_5TBW_044
HL_09829.1
HL_8EIU_0541/a/566:575T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5J7L_150
HL_89380.2
HL_8EIU_0551/a/611:617No text annotation
Not in a motif group
geometric
HL_3DIL_003
HL_42097.2
HL_8EIU_0561/a/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.2
HL_8EIU_0571/a/641:647No text annotation
Not in a motif group
homologous
HL_5J7L_153
HL_77805.2
HL_8EIU_0581/a/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_8EIU_0591/a/744:753No text annotation
Not in a motif group
homologous
HL_5J7L_155
NA
HL_8EIU_0601/a/779:785No text annotation
Not in a motif group
homologous
HL_7RQB_024
HL_74322.1
HL_8EIU_0611/a/826:831No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_64365.1
HL_8EIU_0621/a/885:891No text annotation
Not in a motif group
homologous
HL_7RQB_026
HL_27930.1
HL_8EIU_0631/a/954:963No text annotation
Not in a motif group
homologous
HL_5J7L_159
NA
HL_8EIU_0641/a/978:985No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_8EIU_0651/a/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_8EIU_0661/a/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_8EIU_0671/a/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_8EIU_0681/a/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_8EIU_0691/a/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_8EIU_0701/a/1451:1459No text annotation
Not in a motif group
homologous
HL_5J7L_169
HL_53837.1
HL_8EIU_0711/a/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_8EIU_0721/a/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_8EIU_0731/a/1565:1568No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_38927.2
HL_8EIU_0741/a/1612:1619No text annotation
Not in a motif group
HL_8EIU_0751/a/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.2
HL_8EIU_0761/a/1691:1696No text annotation
Not in a motif group
geometric
HL_7RQB_042
HL_03562.2
HL_8EIU_0771/a/1728:1731No text annotation
Not in a motif group
geometric
HL_4WF9_037
HL_94803.2
HL_8EIU_0781/a/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_76539.2
HL_8EIU_0791/a/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_8EIU_0801/a/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.2
HL_8EIU_0811/a/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_42097.2
HL_8EIU_0821/a/1910:1920No text annotation
Not in a motif group
homologous
HL_5J7L_181
NA
HL_8EIU_0831/a/1949:1957No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_8EIU_0841/a/2027:2036No text annotation
Not in a motif group
HL_8EIU_0851/a/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_8EIU_0861/a/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_8EIU_0871/a/2264:2276No text annotation
Not in a motif group
homologous
HL_5J7L_187
HL_19870.6
HL_8EIU_0881/a/2303:2313No text annotation
Not in a motif group
homologous
HL_5J7L_188
HL_11805.3
HL_8EIU_0891/a/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_8EIU_0901/a/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_8EIU_0911/a/2374:2379GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_42097.2
HL_8EIU_0921/a/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_30784.2
HL_8EIU_0931/a/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_8EIU_0941/a/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_91104.1
HL_8EIU_0951/a/2551:2557No text annotation
Not in a motif group
homologous
HL_7RQB_062
NA
HL_8EIU_0961/a/2594:2599GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_42097.2
HL_8EIU_0971/a/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_42097.2
HL_8EIU_0981/a/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_8EIU_0991/a/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_8EIU_1001/a/2795:2801Other HL
Not in a motif group
homologous
HL_5J7L_200
HL_34168.2
HL_8EIU_1011/a/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_8EIU_1021/a/2856:2861No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_42097.2
HL_8EIU_1031/b/38:44No text annotation
Not in a motif group
geometric
HL_5J7L_203
HL_87939.1
HL_8EIU_1041/b/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2

Problematic loops

#loop idProblemSequence
HL_8EIU_002No text annotation
HL_8EIU_005No text annotation
HL_8EIU_012No text annotation
HL_8EIU_015No text annotation
HL_8EIU_017No text annotation
HL_8EIU_020No text annotation
HL_8EIU_021GNRA
HL_8EIU_022No text annotation
HL_8EIU_023GNRA
HL_8EIU_024No text annotation
HL_8EIU_025No text annotation
HL_8EIU_026GNRA
HL_8EIU_027GNRA
HL_8EIU_028No text annotation
HL_8EIU_029No text annotation
HL_8EIU_030UNCG
HL_8EIU_031No text annotation
HL_8EIU_032No text annotation
HL_8EIU_035No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8EIU_0011/A/30:32,
1/A/552:553
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_00225.3
IL_8EIU_0021/A/44:45,
1/A/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.3
IL_8EIU_0031/A/47:52,
1/A/359:361
No text annotation
Not in a motif group
geometric
IL_5J7L_003
IL_11178.1
IL_8EIU_0041/A/54:56,
1/A/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_8EIU_0051/A/63:66,
1/A/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_8EIU_0061/A/67:69,
1/A/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_8EIU_0081/A/75:76,
1/A/93:95
Single bulged G
Not in a motif group
geometric
IL_5DEA_002
IL_00225.3
IL_8EIU_0091/A/128:131,
1/A/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_8EIU_0101/A/132:136,
1/A/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_8EIU_0111/A/144:146,
1/A/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_8EIU_0121/A/147:153,
1/A/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_8EIU_0131/A/242:247,
1/A/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_8EIU_0141/A/249:252,
1/A/274:275
No text annotation
Not in a motif group
homologous
IL_5J7L_015
IL_48100.2
IL_8EIU_0151/A/292:293,
1/A/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_8EIU_0161/A/367:369,
1/A/392:393
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.14
IL_8EIU_0171/A/371:375,
1/A/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_8EIU_0181/A/375:376,
1/A/387:389
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.3
IL_8EIU_0191/A/409:416,
1/A/427:433
No text annotation
Not in a motif group
homologous
IL_5J7L_020
IL_28026.1
IL_8EIU_0211/A/446:450,
1/A/483:488
tSH-tHW-tWW
Not in a motif group
geometric
IL_5J7L_022
IL_88269.3
IL_8EIU_0221/A/450:455,
1/A/477:483
No text annotation
Not in a motif group
homologous
IL_5J7L_023
IL_70801.1
IL_8EIU_0231/A/504:511,
1/A/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_8EIU_0241/A/515:521,
1/A/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_8EIU_0251/A/569:575,
1/A/880:881
No text annotation
Not in a motif group
homologous
IL_5J7L_026
IL_69996.1
IL_8EIU_0261/A/580:584,
1/A/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_8EIU_0271/A/594:596,
1/A/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.2
IL_8EIU_0281/A/597:598,
1/A/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_8EIU_0291/A/605:612,
1/A/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_8EIU_0301/A/654:655,
1/A/751:754
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_5J7L_031
IL_50694.2
IL_8EIU_0311/A/658:660,
1/A/745:748
No text annotation
Not in a motif group
geometric
IL_4P3T_002
IL_46796.1
IL_8EIU_0321/A/662:666,
1/A/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_8EIU_0331/A/673:678,
1/A/712:717
No text annotation
Not in a motif group
geometric
IL_5J7L_034
IL_04668.1
IL_8EIU_0351/A/774:778,
1/A/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_8EIU_0371/A/887:894,
1/A/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_8EIU_0381/A/922:923,
1/A/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.3
IL_8EIU_0391/A/925:927,
1/A/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.3
IL_8EIU_0651/a/24:30,
1/a/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_245
IL_66414.6
IL_8EIU_0661/a/36:37,
1/a/442:444
Single bulged A
Not in a motif group
homologous
IL_5J7L_246
IL_37497.3
IL_8EIU_0671/a/43:44,
1/a/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_8EIU_0681/a/81:85,
1/a/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_8EIU_0691/a/183:184,
1/a/212:214
Single stack bend
Not in a motif group
homologous
IL_4WF9_007
IL_76488.2
IL_8EIU_0701/a/188:194,
1/a/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_250
IL_04346.7
IL_8EIU_0711/a/239:245,
1/a/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_8EIU_0721/a/269:271,
1/a/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_8EIU_0731/a/274:281,
1/a/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_8EIU_0741/a/293:295,
1/a/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_8EIU_0751/a/481:484,
1/a/496:509
No text annotation
Not in a motif group
homologous
IL_5J7L_255
IL_60992.6
IL_8EIU_0761/a/536:539,
1/a/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_8EIU_0771/a/564:566,
1/a/575:577
No text annotation
Not in a motif group
homologous
IL_5J7L_257
IL_95997.1
IL_8EIU_0781/a/606:610,
1/a/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_8EIU_0791/a/672:674,
1/a/806:808
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_95997.1
IL_8EIU_0801/a/674:678,
1/a/799:806
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_5J7L_260
IL_17470.6
IL_8EIU_0811/a/697:698,
1/a/763:765
Single bulged A
Not in a motif group
homologous
IL_5J7L_261
IL_37497.3
IL_8EIU_0821/a/702:703,
1/a/728:730
Single bulged G
Not in a motif group
homologous
IL_5J7L_262
IL_00225.3
IL_8EIU_0831/a/703:707,
1/a/724:728
Triple sheared
Not in a motif group
geometric
IL_5J7L_263
IL_56467.8
IL_8EIU_0841/a/738:740,
1/a/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.2
IL_8EIU_0851/a/775:777,
1/a/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_265
IL_90991.6
IL_8EIU_0861/a/844:847,
1/a/933:934
Other IL
Not in a motif group
homologous
IL_5J7L_267
IL_92001.1
IL_8EIU_0871/a/847:848,
1/a/930:933
Stack outside cWW
Not in a motif group
geometric
IL_5J7L_268
IL_37629.1
IL_8EIU_0881/a/850:851,
1/a/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_8EIU_0891/a/856:862,
1/a/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_5J7L_270
IL_93830.3
IL_8EIU_0901/a/862:863,
1/a/913:915
Single bulged G
Not in a motif group
homologous
IL_5J7L_271
IL_00225.3
IL_8EIU_0911/a/864:868,
1/a/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_8EIU_0921/a/870:872,
1/a/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_8EIU_0931/a/875:879,
1/a/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_8EIU_0941/a/880:881,
1/a/895:897
No text annotation
Not in a motif group
IL_8EIU_0951/a/994:996,
1/a/1159:1160
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_8EIU_0961/a/998:1002,
1/a/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_5J7L_277
IL_89002.2
IL_8EIU_0971/a/1004:1011,
1/a/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5J7L_278
IL_15861.7
IL_8EIU_0981/a/1011:1013,
1/a/1149:1150
Single bulged U
Not in a motif group
homologous
IL_4WF9_038
IL_83039.14
IL_8EIU_0991/a/1018:1024,
1/a/1140:1144
No text annotation
Not in a motif group
homologous
IL_5J7L_280
IL_57188.3
IL_8EIU_1001/a/1024:1030,
1/a/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_8EIU_1011/a/1031:1034,
1/a/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_282
IL_82068.2
IL_8EIU_1021/a/1038:1041,
1/a/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.3
IL_8EIU_1031/a/1043:1051,
1/a/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_8EIU_1041/a/1196:1198,
1/a/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_5J7L_286
IL_52767.2
IL_8EIU_1051/a/1202:1206,
1/a/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_8EIU_1061/a/1208:1215,
1/a/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_8EIU_1071/a/1262:1269,
1/a/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_8EIU_1081/a/1310:1313,
1/a/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_290
IL_50694.2
IL_8EIU_1091/a/1319:1323,
1/a/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_8EIU_1101/a/1351:1355,
1/a/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_8EIU_1111/a/1357:1361,
1/a/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_8EIU_1121/a/1415:1416,
1/a/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_8EIU_1131/a/1417:1421,
1/a/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_8EIU_1141/a/1432:1435,
1/a/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_8EIU_1151/a/1437:1440,
1/a/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_8EIU_1161/a/1450:1451,
1/a/1459:1461
Single bulged U
Not in a motif group
geometric
IL_5J7L_298
IL_83039.14
IL_8EIU_1171/a/1468:1471,
1/a/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_8EIU_1181/a/1474:1478,
1/a/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_8EIU_1191/a/1481:1482,
1/a/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_8EIU_1201/a/1489:1491,
1/a/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.3
IL_8EIU_1211/a/1526:1529,
1/a/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_8EIU_1221/a/1651:1656,
1/a/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_8EIU_1231/a/1663:1665,
1/a/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_8EIU_1241/a/1666:1669,
1/a/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_5J7L_306
IL_50694.2
IL_8EIU_1251/a/1669:1674,
1/a/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_5J7L_307
IL_82842.2
IL_8EIU_1261/a/1686:1691,
1/a/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_5J7L_308
IL_65969.2
IL_8EIU_1271/a/1712:1718,
1/a/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_8EIU_1281/a/1720:1725,
1/a/1735:1740
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_7A0S_018
IL_86929.2
IL_8EIU_1291/a/1727:1728,
1/a/1731:1733
Single bulged C
Not in a motif group
geometric
IL_5J7L_311
IL_61258.12
IL_8EIU_1301/a/1770:1771,
1/a/1980:1982
Single bulged A
Not in a motif group
homologous
IL_5J7L_312
IL_37497.3
IL_8EIU_1311/a/1798:1804,
1/a/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_8EIU_1321/a/1837:1840,
1/a/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_8EIU_1331/a/1841:1842,
1/a/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_8EIU_1341/a/1846:1849,
1/a/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.6
IL_8EIU_1351/a/1864:1867,
1/a/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_8EIU_1361/a/1933:1934,
1/a/1964:1967
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_076
IL_59677.2
IL_8EIU_1371/a/1934:1945,
1/a/1961:1964
No text annotation
Not in a motif group
geometric
IL_7A0S_072
IL_81589.2
IL_8EIU_1381/a/2050:2052,
1/a/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.2
IL_8EIU_1391/a/2054:2056,
1/a/2612:2615
No text annotation
Not in a motif group
homologous
IL_5J7L_321
IL_54678.5
IL_8EIU_1401/a/2064:2066,
1/a/2444:2446
No text annotation
Not in a motif group
homologous
IL_5J7L_322
NA
IL_8EIU_1411/a/2067:2070,
1/a/2441:2443
No text annotation
Not in a motif group
homologous
IL_5J7L_323
NA
IL_8EIU_1421/a/2070:2071,
1/a/2438:2441
Minor groove platform
Not in a motif group
geometric
IL_5TBW_094
IL_42622.2
IL_8EIU_1431/a/2081:2083,
1/a/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_8EIU_1441/a/2085:2087,
1/a/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_8EIU_1451/a/2202:2204,
1/a/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.14
IL_8EIU_1461/a/2297:2299,
1/a/2317:2321
No text annotation
Not in a motif group
homologous
IL_5J7L_332
IL_56105.1
IL_8EIU_1471/a/2350:2353,
1/a/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_8EIU_1481/a/2401:2403,
1/a/2414:2415
Single bulged U
Not in a motif group
geometric
IL_5LYS_008
IL_83039.14
IL_8EIU_1491/a/2453:2455,
1/a/2496:2500
No text annotation
Not in a motif group
homologous
IL_5J7L_335
NA
IL_8EIU_1501/a/2456:2459,
1/a/2493:2495
No text annotation
Not in a motif group
homologous
IL_5J7L_336
NA
IL_8EIU_1511/a/2459:2461,
1/a/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_5J7L_337
IL_92788.2
IL_8EIU_1521/a/2466:2470,
1/a/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_8EIU_1531/a/2507:2509,
1/a/2579:2582
No text annotation
Not in a motif group
homologous
IL_5J7L_339
NA
IL_8EIU_1541/a/2510:2512,
1/a/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_340
IL_90933.2
IL_8EIU_1551/a/2512:2513,
1/a/2571:2574
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_8EIU_1561/a/2522:2523,
1/a/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_8EIU_1571/a/2588:2591,
1/a/2603:2606
No text annotation
Not in a motif group
geometric
IL_6AZ4_001
IL_69145.1
IL_8EIU_1581/a/2591:2592,
1/a/2601:2603
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.3
IL_8EIU_1591/a/2636:2640,
1/a/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_8EIU_1601/a/2652:2658,
1/a/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_5J7L_346
IL_16458.1
IL_8EIU_1611/a/2680:2684,
1/a/2725:2727
C-loop
Not in a motif group
homologous
IL_4WF9_101
IL_63596.6
IL_8EIU_1621/a/2687:2691,
1/a/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_8EIU_1631/a/2695:2696,
1/a/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_8EIU_1641/a/2737:2742,
1/a/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_8EIU_1651/a/2806:2811,
1/a/2889:2892
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_49460.2
IL_8EIU_1661/a/2838:2839,
1/a/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_16396.2
IL_8EIU_1671/a/2843:2846,
1/a/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_8EIU_1681/a/2847:2852,
1/a/2865:2869
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.5
IL_8EIU_1691/b/17:18,
1/b/65:67
Major groove intercalation
Not in a motif group
homologous
IL_7RQB_111
IL_37497.3
IL_8EIU_1701/b/23:28,
1/b/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_8EIU_1711/b/30:31,
1/b/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_7RQB_113
IL_09061.6
IL_8EIU_1721/b/34:38,
1/b/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5J7L_358
IL_58103.6
IL_8EIU_1731/b/71:79,
1/b/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3

Problematic loops

#loop idProblemSequence
IL_8EIU_007Minor groove platform
IL_8EIU_020No text annotation
IL_8EIU_034Kink-turn
IL_8EIU_036tSH-tHW-tHS
IL_8EIU_040Minor groove platform
IL_8EIU_041No text annotation
IL_8EIU_042Minor groove platform
IL_8EIU_043Single stack bend
IL_8EIU_044Single bulged U
IL_8EIU_045No text annotation
IL_8EIU_046Isolated cWS basepair
IL_8EIU_047Minor groove platform
IL_8EIU_048Single bulged A
IL_8EIU_049No text annotation
IL_8EIU_050No text annotation
IL_8EIU_051Minor groove platform
IL_8EIU_052No text annotation
IL_8EIU_053No text annotation
IL_8EIU_054No text annotation
IL_8EIU_055Triple sheared
IL_8EIU_056No text annotation
IL_8EIU_057No text annotation
IL_8EIU_058No text annotation
IL_8EIU_059No text annotation
IL_8EIU_060No text annotation
IL_8EIU_061Double sheared
IL_8EIU_062Triple sheared related
IL_8EIU_063Minor groove platform
IL_8EIU_064No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8EIU_0011/A/46:47,
1/A/361:367,
1/A/393:395
No text annotation
Not in a motif group
J3_8EIU_0021/A/586:588,
1/A/651:654,
1/A/754:755
No text annotation
Not in a motif group
homologous
J3_5J7L_002
NA
J3_8EIU_0031/A/672:673,
1/A/717:725,
1/A/732:734
No text annotation
Not in a motif group
homologous
J3_5J7L_003
NA
J3_8EIU_0041/A/826:829,
1/A/857:861,
1/A/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_8EIU_0141/a/30:31,
1/a/474:481,
1/a/509:510
No text annotation
Not in a motif group
J3_8EIU_0151/a/56:57,
1/a/70:76,
1/a/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_8EIU_0161/a/683:689,
1/a/773:775,
1/a/791:794
No text annotation
Not in a motif group
J3_8EIU_0171/a/698:700,
1/a/732:736,
1/a/760:763
No text annotation
Not in a motif group
J3_8EIU_0181/a/1298:1303,
1/a/1625:1627,
1/a/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_8EIU_0191/a/1306:1309,
1/a/1605:1611,
1/a/1620:1622
No text annotation
Not in a motif group
homologous
J3_7RQB_008
NA
J3_8EIU_0201/a/1344:1349,
1/a/1382:1385,
1/a/1402:1403
No text annotation
Not in a motif group
homologous
J3_5J7L_043
NA
J3_8EIU_0211/a/2091:2093,
1/a/2196:2200,
1/a/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_8EIU_0221/a/2295:2297,
1/a/2321:2323,
1/a/2332:2337
No text annotation
Not in a motif group
J3_8EIU_0231/a/2517:2520,
1/a/2545:2547,
1/a/2561:2567
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_8EIU_0241/a/2789:2791,
1/a/2805:2806,
1/a/2892:2894
No text annotation
Not in a motif group
J3_8EIU_0251/a/2812:2815,
1/a/2831:2836,
1/a/2882:2888
No text annotation
Not in a motif group
homologous
J3_5J7L_048
NA
J3_8EIU_0261/b/10:16,
1/b/68:70,
1/b/106:110
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA

Problematic loops

#loop idProblemSequence
J3_8EIU_005No text annotation
J3_8EIU_006No text annotation
J3_8EIU_007No text annotation
J3_8EIU_008