4V6P Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V6P_001 | 1/AA/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_4V6P_002 | 1/AA/82:87 | No text annotation Not in a motif group | ||
| HL_4V6P_003 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_4V6P_004 | 1/AA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_4V6P_005 | 1/AA/207:212 | UNCG Not in a motif group | homologous HL_5J7L_005 HL_03562.2 | |
| HL_4V6P_006 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_4V6P_007 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_4V6P_008 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V6P_009 | 1/AA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_4V6P_010 | 1/AA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_4V6P_011 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_4V6P_012 | 1/AA/462:470 | No text annotation Not in a motif group | ||
| HL_4V6P_013 | 1/AA/521:528 | No text annotation Not in a motif group | homologous HL_5J7L_013 NA | |
| HL_4V6P_014 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_6CZR_085 HL_26881.1 | |
| HL_4V6P_015 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_4V6P_016 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_4V6P_017 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_4V6P_018 | 1/AA/839:847 | No text annotation Not in a motif group | ||
| HL_4V6P_019 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_4V6P_020 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_4V6P_021 | 1/AA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V6P_022 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_4V6P_023 | 1/AA/1028:1033 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_4V6P_024 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_4V6P_025 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
| HL_4V6P_026 | 1/AA/1134:1140 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_03562.2 | |
| HL_4V6P_027 | 1/AA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_4V6P_028 | 1/AA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_4V6P_029 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_4V6P_030 | 1/AA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_4V6P_031 | 1/AA/1449:1454 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_4V6P_032 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_4V6P_033 | 1/AB/13:22 | No text annotation Not in a motif group | homologous HL_2AKE_001 NA | |
| HL_4V6P_034 | 1/AB/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4V9Q_214 HL_53597.2 | |
| HL_4V6P_035 | 1/AB/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5UD5_003 HL_22280.1 | |
| HL_4V6P_036 | 1/AD/13:23 | No text annotation Not in a motif group | homologous HL_6JXM_001 HL_25462.2 | |
| HL_4V6P_037 | 1/AD/32:40 | No text annotation Not in a motif group | homologous HL_6PMO_004 NA | |
| HL_4V6P_038 | 1/AD/54:62 | No text annotation Not in a motif group | homologous HL_1IL2_003 NA | |
| HL_4V6P_039 | 1/BA/38:44 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_4V6P_040 | 1/BA/85:91 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_75407.1 | |
| HL_4V6P_041 | 1/BB/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_4V6P_042 | 1/BB/86:96 | No text annotation Not in a motif group | ||
| HL_4V6P_043 | 1/BB/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_4V6P_044 | 1/BB/137:142 | No text annotation Not in a motif group | geometric HL_6CK5_001 HL_03562.2 | |
| HL_4V6P_045 | 1/BB/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_4V6P_046 | 1/BB/194:201 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_06192.2 | |
| HL_4V6P_047 | 1/BB/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_4V6P_048 | 1/BB/246:252 | No text annotation Not in a motif group | homologous HL_7A0S_008 HL_67216.7 | |
| HL_4V6P_049 | 1/BB/305:312 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_4V6P_050 | 1/BB/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_4V6P_051 | 1/BB/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_4V6P_052 | 1/BB/381:393 | No text annotation Not in a motif group | ||
| HL_4V6P_053 | 1/BB/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4V6P_054 | 1/BB/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4V6P_055 | 1/BB/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_4V6P_056 | 1/BB/543:550 | No text annotation Not in a motif group | ||
| HL_4V6P_057 | 1/BB/564:577 | No text annotation Not in a motif group | ||
| HL_4V6P_058 | 1/BB/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_4V6P_059 | 1/BB/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_4V6P_060 | 1/BB/640:648 | No text annotation Not in a motif group | ||
| HL_4V6P_061 | 1/BB/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_4V6P_062 | 1/BB/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
| HL_4V6P_063 | 1/BB/779:785 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_4V6P_064 | 1/BB/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_4V6P_065 | 1/BB/885:891 | No text annotation Not in a motif group | ||
| HL_4V6P_066 | 1/BB/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
| HL_4V6P_067 | 1/BB/978:985 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_75407.1 | |
| HL_4V6P_068 | 1/BB/1064:1074 | No text annotation Not in a motif group | homologous HL_5J7L_161 HL_07145.1 | |
| HL_4V6P_069 | 1/BB/1092:1099 | No text annotation Not in a motif group | homologous HL_7A0S_029 HL_56691.2 | |
| HL_4V6P_070 | 1/BB/1172:1177 | No text annotation Not in a motif group | ||
| HL_4V6P_071 | 1/BB/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_4V6P_072 | 1/BB/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_4V6P_073 | 1/BB/1324:1330 | No text annotation Not in a motif group | homologous HL_7A0S_033 HL_46680.1 | |
| HL_4V6P_074 | 1/BB/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_4V6P_075 | 1/BB/1389:1398 | No text annotation Not in a motif group | ||
| HL_4V6P_076 | 1/BB/1450:1461 | No text annotation Not in a motif group | ||
| HL_4V6P_077 | 1/BB/1492:1498 | No text annotation Not in a motif group | homologous HL_7A0S_037 HL_46680.1 | |
| HL_4V6P_078 | 1/BB/1532:1539 | No text annotation Not in a motif group | ||
| HL_4V6P_079 | 1/BB/1565:1568 | No text annotation Not in a motif group | ||
| HL_4V6P_080 | 1/BB/1612:1619 | No text annotation Not in a motif group | ||
| HL_4V6P_081 | 1/BB/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_4V6P_082 | 1/BB/1691:1696 | UNCG Not in a motif group | geometric HL_1KUQ_001 HL_03562.2 | |
| HL_4V6P_083 | 1/BB/1728:1731 | No text annotation Not in a motif group | homologous HL_5J7L_176 HL_98426.1 | |
| HL_4V6P_084 | 1/BB/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_4V6P_085 | 1/BB/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_4V6P_086 | 1/BB/1806:1811 | No text annotation Not in a motif group | homologous HL_4WF9_044 NA | |
| HL_4V6P_087 | 1/BB/1868:1873 | GNRA Not in a motif group | geometric HL_3V7E_003 HL_42097.1 | |
| HL_4V6P_088 | 1/BB/1910:1920 | No text annotation Not in a motif group | homologous HL_5J7L_181 NA | |
| HL_4V6P_089 | 1/BB/1949:1957 | No text annotation Not in a motif group | homologous HL_7A0S_048 HL_51824.1 | |
| HL_4V6P_090 | 1/BB/2027:2036 | No text annotation Not in a motif group | ||
| HL_4V6P_091 | 1/BB/2141:2150 | No text annotation Not in a motif group | ||
| HL_4V6P_092 | 1/BB/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_4V6P_093 | 1/BB/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4V6P_094 | 1/BB/2264:2276 | No text annotation Not in a motif group | ||
| HL_4V6P_095 | 1/BB/2303:2313 | No text annotation Not in a motif group | ||
| HL_4V6P_096 | 1/BB/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_4V6P_097 | 1/BB/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_4V6P_098 | 1/BB/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_4V6P_099 | 1/BB/2404:2413 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_4V6P_100 | 1/BB/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
| HL_4V6P_101 | 1/BB/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_4V6P_102 | 1/BB/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_4V6P_103 | 1/BB/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_4V6P_104 | 1/BB/2658:2663 | GNRA Not in a motif group | geometric HL_3IGI_006 HL_42097.1 | |
| HL_4V6P_105 | 1/BB/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_7A0S_064 HL_46680.1 | |
| HL_4V6P_106 | 1/BB/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_4V6P_107 | 1/BB/2796:2800 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_53837.1 | |
| HL_4V6P_108 | 1/BB/2818:2828 | No text annotation Not in a motif group | ||
| HL_4V6P_109 | 1/BB/2856:2861 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V6P_001 | 1/AA/30:33, 1/AA/551:553 | No text annotation Not in a motif group | geometric IL_4V88_472 IL_95997.1 | |
| IL_4V6P_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_4V6P_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | homologous IL_6CZR_115 IL_11178.1 | |
| IL_4V6P_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_4V6P_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_4V6P_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_4V6P_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_4V6P_008 | 1/AA/75:77, 1/AA/92:95 | Single bulged G, near cWW Not in a motif group | homologous IL_5J7L_008 IL_82068.2 | |
| IL_4V6P_009 | 1/AA/127:131, 1/AA/231:234 | No text annotation Not in a motif group | ||
| IL_4V6P_010 | 1/AA/132:136, 1/AA/227:230 | No text annotation Not in a motif group | ||
| IL_4V6P_011 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_4V6P_012 | 1/AA/146:153, 1/AA/168:176 | No text annotation Not in a motif group | ||
| IL_4V6P_013 | 1/AA/201:206, 1/AA/213:216 | No text annotation Not in a motif group | ||
| IL_4V6P_014 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_4V6P_015 | 1/AA/248:253, 1/AA/273:276 | No text annotation Not in a motif group | ||
| IL_4V6P_016 | 1/AA/292:293, 1/AA/304:308 | No text annotation Not in a motif group | ||
| IL_4V6P_017 | 1/AA/367:369, 1/AA/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_4V6P_018 | 1/AA/371:376, 1/AA/387:390 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
| IL_4V6P_019 | 1/AA/408:416, 1/AA/427:434 | No text annotation Not in a motif group | ||
| IL_4V6P_020 | 1/AA/440:442, 1/AA/492:497 | Other IL Not in a motif group | geometric IL_4PDB_001 IL_22248.1 | |
| IL_4V6P_021 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_88269.3 | |
| IL_4V6P_022 | 1/AA/450:455, 1/AA/477:483 | No text annotation Not in a motif group | ||
| IL_4V6P_023 | 1/AA/456:460, 1/AA/471:476 | Other IL Not in a motif group | geometric IL_4WF9_084 IL_05145.2 | |
| IL_4V6P_024 | 1/AA/460:462, 1/AA/470:471 | Single stack bend Not in a motif group | geometric IL_7KGA_006 IL_76488.2 | |
| IL_4V6P_025 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_4V6P_026 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | ||
| IL_4V6P_027 | 1/AA/569:575, 1/AA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_4V6P_028 | 1/AA/580:585, 1/AA/756:761 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_1MFQ_007 IL_76308.4 | |
| IL_4V6P_029 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_4V6P_030 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_4V6P_031 | 1/AA/604:612, 1/AA/628:634 | No text annotation Not in a motif group | ||
| IL_4V6P_032 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_031 IL_50694.2 | |
| IL_4V6P_033 | 1/AA/659:660, 1/AA/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_4V6P_034 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_4V6P_035 | 1/AA/673:678, 1/AA/712:717 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.1 | |
| IL_4V6P_036 | 1/AA/684:688, 1/AA/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_4V6P_037 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_4V6P_038 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_4V6P_039 | 1/AA/887:896, 1/AA/903:910 | 10x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_6UFG_002 IL_26785.1 | |
| IL_4V6P_040 | 1/AA/922:924, 1/AA/1392:1395 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 | |
| IL_4V6P_041 | 1/AA/924:927, 1/AA/1390:1392 | No text annotation Not in a motif group | geometric IL_6CZR_122 IL_95997.1 | |
| IL_4V6P_042 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_4V6P_043 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_4V6P_044 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform Not in a motif group | geometric IL_5J7L_043 IL_47078.1 | |
| IL_4V6P_045 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
| IL_4V6P_046 | 1/AA/1048:1056, 1/AA/1204:1209 | No text annotation Not in a motif group | ||
| IL_4V6P_047 | 1/AA/1056:1059, 1/AA/1198:1204 | No text annotation Not in a motif group | ||
| IL_4V6P_048 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_4V6P_049 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | geometric IL_4V88_448 IL_10023.1 | |
| IL_4V6P_050 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_4V6P_051 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_4V6P_052 | 1/AA/1158:1162, 1/AA/1174:1181 | No text annotation Not in a motif group | ||
| IL_4V6P_053 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_4V6P_054 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | ||
| IL_4V6P_055 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_4V6P_056 | 1/AA/1303:1308, 1/AA/1329:1334 | Quadruple sheared Not in a motif group | geometric IL_5LR3_002 IL_06136.1 | |
| IL_4V6P_057 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_4V6P_058 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4V6P_059 | 1/AA/1405:1409, 1/AA/1491:1496 | No text annotation Not in a motif group | homologous IL_5J7L_060 NA | |
| IL_4V6P_060 | 1/AA/1412:1415, 1/AA/1485:1488 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_6CZR_168 IL_67743.1 | |
| IL_4V6P_061 | 1/AA/1416:1420, 1/AA/1480:1484 | No text annotation Not in a motif group | ||
| IL_4V6P_062 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_4V6P_063 | 1/AA/1438:1443, 1/AA/1459:1463 | No text annotation Not in a motif group | ||
| IL_4V6P_064 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 | |
| IL_4V6P_065 | 1/BA/17:18, 1/BA/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_4V6P_066 | 1/BA/23:28, 1/BA/56:60 | No text annotation Not in a motif group | homologous IL_7A0S_103 IL_18472.2 | |
| IL_4V6P_067 | 1/BA/30:31, 1/BA/51:54 | Minor groove platform Not in a motif group | geometric IL_3MXH_005 IL_15052.1 | |
| IL_4V6P_068 | 1/BA/34:38, 1/BA/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_4V6P_069 | 1/BA/71:79, 1/BA/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_4V6P_070 | 1/BB/24:30, 1/BB/510:516 | No text annotation Not in a motif group | ||
| IL_4V6P_071 | 1/BB/36:37, 1/BB/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_4V6P_072 | 1/BB/43:44, 1/BB/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_4V6P_073 | 1/BB/80:85, 1/BB/97:106 | No text annotation Not in a motif group | ||
| IL_4V6P_074 | 1/BB/183:184, 1/BB/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_4V6P_075 | 1/BB/188:194, 1/BB/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.7 | |
| IL_4V6P_076 | 1/BB/239:245, 1/BB/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_4V6P_077 | 1/BB/269:271, 1/BB/366:370 | No text annotation Not in a motif group | ||
| IL_4V6P_078 | 1/BB/274:281, 1/BB/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4V6P_079 | 1/BB/293:295, 1/BB/343:347 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.1 | |
| IL_4V6P_080 | 1/BB/481:484, 1/BB/496:509 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.6 | |
| IL_4V6P_081 | 1/BB/536:539, 1/BB/554:557 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_4V6P_082 | 1/BB/606:610, 1/BB/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_4V6P_083 | 1/BB/671:674, 1/BB/806:809 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.2 | |
| IL_4V6P_084 | 1/BB/674:678, 1/BB/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_5J7L_260 IL_17470.6 | |
| IL_4V6P_085 | 1/BB/694:696, 1/BB/766:768 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_51629.2 | |
| IL_4V6P_086 | 1/BB/697:698, 1/BB/763:765 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.2 | |
| IL_4V6P_087 | 1/BB/702:707, 1/BB/724:730 | Quadruple sheared Not in a motif group | geometric IL_3R9W_001 IL_06136.1 | |
| IL_4V6P_088 | 1/BB/738:740, 1/BB/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_4V6P_089 | 1/BB/775:777, 1/BB/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_4V6P_090 | 1/BB/843:845, 1/BB/934:935 | Single stack bend Not in a motif group | geometric IL_5J7L_249 IL_76488.2 | |
| IL_4V6P_091 | 1/BB/845:848, 1/BB/930:934 | No text annotation Not in a motif group | ||
| IL_4V6P_092 | 1/BB/849:851, 1/BB/926:929 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_4V6P_093 | 1/BB/856:862, 1/BB/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_4V6P_094 | 1/BB/862:868, 1/BB/909:915 | No text annotation Not in a motif group | ||
| IL_4V6P_095 | 1/BB/870:872, 1/BB/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_4V6P_096 | 1/BB/875:879, 1/BB/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_4V6P_097 | 1/BB/880:884, 1/BB/892:897 | No text annotation Not in a motif group | ||
| IL_4V6P_098 | 1/BB/992:996, 1/BB/1159:1162 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.2 | |
| IL_4V6P_099 | 1/BB/998:1002, 1/BB/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
| IL_4V6P_100 | 1/BB/1002:1011, 1/BB/1150:1153 | No text annotation Not in a motif group | ||
| IL_4V6P_101 | 1/BB/1011:1013, 1/BB/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_4V6P_102 | 1/BB/1018:1024, 1/BB/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_4V6P_103 | 1/BB/1024:1030, 1/BB/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_4V6P_104 | 1/BB/1031:1034, 1/BB/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_041 IL_82068.2 | |
| IL_4V6P_105 | 1/BB/1038:1042, 1/BB/1113:1117 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_4V6P_106 | 1/BB/1043:1051, 1/BB/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.4 | |
| IL_4V6P_107 | 1/BB/1059:1062, 1/BB/1076:1079 | No text annotation Not in a motif group | ||
| IL_4V6P_108 | 1/BB/1087:1090, 1/BB/1101:1102 | Major groove platform Not in a motif group | geometric IL_3OXE_003 IL_27635.1 | |
| IL_4V6P_109 | 1/BB/1196:1199, 1/BB/1246:1250 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_7A0S_040 IL_30621.2 | |
| IL_4V6P_110 | 1/BB/1202:1207, 1/BB/1239:1243 | No text annotation Not in a motif group | ||
| IL_4V6P_111 | 1/BB/1208:1215, 1/BB/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_4V6P_112 | 1/BB/1262:1269, 1/BB/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_4V6P_113 | 1/BB/1310:1313, 1/BB/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_290 IL_50694.2 | |
| IL_4V6P_114 | 1/BB/1319:1324, 1/BB/1330:1333 | No text annotation Not in a motif group | ||
| IL_4V6P_115 | 1/BB/1357:1361, 1/BB/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_4V6P_116 | 1/BB/1415:1416, 1/BB/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_4V6P_117 | 1/BB/1417:1421, 1/BB/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_4V6P_118 | 1/BB/1432:1435, 1/BB/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_4V6P_119 | 1/BB/1437:1442, 1/BB/1549:1555 | No text annotation Not in a motif group | ||
| IL_4V6P_120 | 1/BB/1468:1471, 1/BB/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_4V6P_121 | 1/BB/1473:1478, 1/BB/1513:1518 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_4V6P_122 | 1/BB/1481:1482, 1/BB/1507:1510 | No text annotation Not in a motif group | ||
| IL_4V6P_123 | 1/BB/1489:1491, 1/BB/1499:1500 | No text annotation Not in a motif group | ||
| IL_4V6P_124 | 1/BB/1526:1529, 1/BB/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_4V6P_125 | 1/BB/1651:1656, 1/BB/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4V6P_126 | 1/BB/1663:1665, 1/BB/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
| IL_4V6P_127 | 1/BB/1666:1669, 1/BB/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_4V6P_128 | 1/BB/1669:1674, 1/BB/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 IL_82842.2 | |
| IL_4V6P_129 | 1/BB/1686:1691, 1/BB/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7A0S_063 IL_65969.2 | |
| IL_4V6P_130 | 1/BB/1712:1718, 1/BB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_4V6P_131 | 1/BB/1720:1725, 1/BB/1735:1740 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7A0S_018 IL_86929.2 | |
| IL_4V6P_132 | 1/BB/1727:1728, 1/BB/1731:1733 | Single bulged C Not in a motif group | geometric IL_5J7L_311 IL_61258.12 | |
| IL_4V6P_133 | 1/BB/1770:1771, 1/BB/1980:1982 | Single bulged A Not in a motif group | homologous IL_7A0S_064 IL_37497.2 | |
| IL_4V6P_134 | 1/BB/1798:1804, 1/BB/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_4V6P_135 | 1/BB/1837:1840, 1/BB/1902:1903 | No text annotation Not in a motif group | ||
| IL_4V6P_136 | 1/BB/1840:1842, 1/BB/1898:1902 | Multiple bulged bases, near cWW Not in a motif group | geometric IL_5M0H_002 IL_51629.2 | |
| IL_4V6P_137 | 1/BB/1864:1867, 1/BB/1874:1878 | UAA/GAN Not in a motif group | homologous IL_4WF9_075 IL_77691.1 | |
| IL_4V6P_138 | 1/BB/1933:1934, 1/BB/1964:1967 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_003 IL_69996.1 | |
| IL_4V6P_139 | 1/BB/1934:1945, 1/BB/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_4V6P_140 | 1/BB/2050:2052, 1/BB/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_4V6P_141 | 1/BB/2053:2056, 1/BB/2612:2616 | No text annotation Not in a motif group | ||
| IL_4V6P_142 | 1/BB/2064:2066, 1/BB/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_4V6P_143 | 1/BB/2067:2071, 1/BB/2438:2443 | No text annotation Not in a motif group | ||
| IL_4V6P_144 | 1/BB/2081:2083, 1/BB/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_4V6P_145 | 1/BB/2084:2087, 1/BB/2232:2235 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_4V6P_146 | 1/BB/2103:2105, 1/BB/2184:2186 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_52767.2 | |
| IL_4V6P_147 | 1/BB/2106:2110, 1/BB/2179:2183 | No text annotation Not in a motif group | ||
| IL_4V6P_148 | 1/BB/2110:2120, 1/BB/2177:2179 | No text annotation Not in a motif group | ||
| IL_4V6P_149 | 1/BB/2120:2123, 1/BB/2175:2177 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_84698.1 | |
| IL_4V6P_150 | 1/BB/2124:2128, 1/BB/2160:2174 | No text annotation Not in a motif group | ||
| IL_4V6P_151 | 1/BB/2128:2136, 1/BB/2155:2160 | No text annotation Not in a motif group | ||
| IL_4V6P_152 | 1/BB/2202:2204, 1/BB/2220:2221 | Single bulged U Not in a motif group | geometric IL_6UFH_004 IL_83039.13 | |
| IL_4V6P_153 | 1/BB/2350:2353, 1/BB/2364:2367 | Double sheared Not in a motif group | homologous IL_4WF9_087 IL_09705.9 | |
| IL_4V6P_154 | 1/BB/2401:2403, 1/BB/2414:2415 | Major groove platform Not in a motif group | homologous IL_7A0S_082 IL_27635.1 | |
| IL_4V6P_155 | 1/BB/2456:2461, 1/BB/2489:2495 | No text annotation Not in a motif group | ||
| IL_4V6P_156 | 1/BB/2466:2470, 1/BB/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_4V6P_157 | 1/BB/2507:2509, 1/BB/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_4V6P_158 | 1/BB/2510:2512, 1/BB/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_4V6P_159 | 1/BB/2512:2513, 1/BB/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_4V6P_160 | 1/BB/2588:2590, 1/BB/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_4V6P_161 | 1/BB/2591:2592, 1/BB/2601:2603 | Single bulged A Not in a motif group | geometric IL_6WPI_001 IL_37497.2 | |
| IL_4V6P_162 | 1/BB/2636:2640, 1/BB/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_4V6P_163 | 1/BB/2652:2658, 1/BB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 IL_16458.1 | |
| IL_4V6P_164 | 1/BB/2680:2684, 1/BB/2725:2727 | C-loop Not in a motif group | homologous IL_7A0S_095 IL_63596.6 | |
| IL_4V6P_165 | 1/BB/2687:2691, 1/BB/2718:2722 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_4V6P_166 | 1/BB/2695:2696, 1/BB/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_4V6P_167 | 1/BB/2737:2742, 1/BB/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_4V6P_168 | 1/BB/2806:2811, 1/BB/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_49460.2 | |
| IL_4V6P_169 | 1/BB/2838:2839, 1/BB/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_4V6P_170 | 1/BB/2843:2846, 1/BB/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_4V6P_171 | 1/BB/2847:2852, 1/BB/2865:2869 | No text annotation Not in a motif group | homologous IL_4WF9_108 IL_83162.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V6P_001 | 1/AA/45:47, 1/AA/361:367, 1/AA/393:396 | No text annotation Not in a motif group | ||
| J3_4V6P_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_4V6P_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation Not in a motif group | homologous J3_6CZR_017 NA | |
| J3_4V6P_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_4V6P_005 | 1/AA/941:946, 1/AA/1235:1237, 1/AA/1337:1342 | No text annotation Not in a motif group | ||
| J3_4V6P_006 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4V6P_007 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | homologous J3_6CZR_021 NA | |
| J3_4V6P_008 | 1/AA/1003:1006, 1/AA/1023:1027, 1/AA/1034:1037 | No text annotation Not in a motif group | ||
| J3_4V6P_009 | 1/AA/1063:1068, 1/AA/1107:1114, 1/AA/1186:1193 | No text annotation Not in a motif group | ||
| J3_4V6P_010 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_4V6P_011 | 1/AA/1116:1119, 1/AA/1154:1158, 1/AA/1181:1184 | No text annotation Not in a motif group | ||
| J3_4V6P_012 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation Not in a motif group | ||
| J3_4V6P_013 | 1/BA/10:16, 1/BA/68:70, 1/BA/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA | |
| J3_4V6P_014 | 1/BB/30:31, 1/BB/474:481, 1/BB/509:510 | No text annotation Not in a motif group | ||
| J3_4V6P_015 | 1/BB/55:57, 1/BB/70:76, 1/BB/110:115 | No text annotation Not in a motif group | ||
| J3_4V6P_016 | 1/BB/683:689, 1/BB/773:775, 1/BB/791:794 | No text annotation Not in a motif group | homologous J3_4WF9_002 NA | |
| J3_4V6P_017 | 1/BB/698:700, 1/BB/732:736, 1/BB/760:763 | No text annotation Not in a motif group | ||
| J3_4V6P_018 | 1/BB/1055:1059, 1/BB/1079:1087, 1/BB/1102:1104 | No text annotation Not in a motif group | ||
| J3_4V6P_019 | 1/BB/1298:1303, 1/BB/1625:1628, 1/BB/1638:1642 | No text annotation Not in a motif group | ||
| J3_4V6P_020 | 1/BB/1306:1309, 1/BB/1605:1611, 1/BB/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_4V6P_021 | 1/BB/2091:2093, 1/BB/2196:2200, 1/BB/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_4V6P_022 | 1/BB/2295:2299, 1/BB/2317:2324, 1/BB/2331:2337 | No text annotation Not in a motif group | ||
| J3_4V6P_023 | 1/BB/2789:2791, 1/BB/2805:2806, 1/BB/2892:2894 | No text annotation Not in a motif group | ||
| J3_4V6P_024 | 1/BB/2811:2817, 1/BB/2829:2836, 1/BB/2882:2889 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: