RNA 3D Hub //

6QT0 Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6QT0_0011/A/38:45No text annotation
Not in a motif group		geometric
HL_5TBW_001
HL_06192.2
HL_6QT0_0021/A/69:74No text annotation
Not in a motif group		homologous
HL_8C3A_002
HL_02862.2
HL_6QT0_0031/A/90:96No text annotation
Not in a motif group		homologous
HL_8C3A_003
HL_67216.7
HL_6QT0_0041/A/132:136No text annotation
Not in a motif group		homologous
HL_5TBW_004
HL_98426.1
HL_6QT0_0051/A/194:201T-loop with 1 bulged base
Not in a motif group		homologous
HL_5TBW_005
HL_89380.2
HL_6QT0_0061/A/208:212No text annotation
Not in a motif group		homologous
HL_5TBW_006
HL_98984.2
HL_6QT0_0071/A/216:224No text annotation
Not in a motif group		homologous
HL_5TBW_007
HL_08002.8
HL_6QT0_0081/A/278:287No text annotation
Not in a motif group		homologous
HL_5TBW_008
HL_71554.2
HL_6QT0_0101/A/357:362No text annotation
Not in a motif group		homologous
HL_8C3A_010
HL_42097.1
HL_6QT0_0111/A/382:387No text annotation
Not in a motif group		homologous
HL_8C3A_011
HL_42097.1
HL_6QT0_0121/A/541:550No text annotation
Not in a motif group
HL_6QT0_0131/A/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_42097.1
HL_6QT0_0141/A/640:649No text annotation
Not in a motif group		homologous
HL_8C3A_014
HL_89380.2
HL_6QT0_0151/A/686:694No text annotation
Not in a motif group		homologous
HL_8C3A_015
HL_03345.1
HL_6QT0_0171/A/732:737GNRA
Not in a motif group		homologous
HL_5TBW_017
HL_42097.1
HL_6QT0_0221/A/958:963No text annotation
Not in a motif group		homologous
HL_5TBW_022
HL_94803.1
HL_6QT0_0261/A/1148:1155No text annotation
Not in a motif group		homologous
HL_5TBW_026
HL_64430.2
HL_6QT0_0291/A/1347:1357No text annotation
Not in a motif group
HL_6QT0_0301/A/1403:1408GNRA
Not in a motif group		homologous
HL_5TBW_030
HL_42097.1
HL_6QT0_0651/A/3025:3030No text annotation
Not in a motif group		homologous
HL_8C3A_066
HL_42097.1
HL_6QT0_0661/A/3068:3073Ribsomal LSU H95
Not in a motif group		homologous
HL_5TBW_066
HL_46680.1
HL_6QT0_0671/A/3110:3124No text annotation
Not in a motif group		homologous
HL_8C3A_068
HL_56677.7
HL_6QT0_0681/A/3194:3197No text annotation
Not in a motif group		homologous
HL_5TBW_068
HL_98426.1
HL_6QT0_0701/A/3303:3311No text annotation
Not in a motif group		homologous
HL_8C3A_071
HL_27930.1
HL_6QT0_0721/x/36:41No text annotation
Not in a motif group		geometric
HL_5TBW_185
HL_87939.1
HL_6QT0_0731/x/88:93GNRA
Not in a motif group		homologous
HL_5TBW_186
HL_42097.1
HL_6QT0_0741/y/47:56No text annotation
Not in a motif group		geometric
HL_7A0S_001
HL_99167.1
HL_6QT0_0751/y/69:89No text annotation
Not in a motif group
HL_6QT0_0761/y/108:114No text annotation
Not in a motif group		homologous
HL_5TBW_075
HL_87939.1
HL_6QT0_0771/y/124:129No text annotation
Not in a motif group		homologous
HL_5TBW_076
HL_96851.2

Problematic loops

#loop idProblemSequence
HL_6QT0_009No text annotation
HL_6QT0_016GNRA
HL_6QT0_018No text annotation
HL_6QT0_019No text annotation
HL_6QT0_020No text annotation
HL_6QT0_021No text annotation
HL_6QT0_023No text annotation
HL_6QT0_024No text annotation
HL_6QT0_025No text annotation
HL_6QT0_027No text annotation
HL_6QT0_028No text annotation
HL_6QT0_031No text annotation
HL_6QT0_032No text annotation
HL_6QT0_033Other HL
HL_6QT0_034No text annotation
HL_6QT0_035No text annotation
HL_6QT0_036GNRA
HL_6QT0_037No text annotation
HL_6QT0_038No text annotation
HL_6QT0_039No text annotation
HL_6QT0_040No text annotation
HL_6QT0_041No text annotation
HL_6QT0_042GNRA with one bulged base
HL_6QT0_043UNCG
HL_6QT0_044No text annotation
HL_6QT0_045No text annotation
HL_6QT0_046No text annotation
HL_6QT0_047No text annotation
HL_6QT0_048Other HL
HL_6QT0_049No text annotation
HL_6QT0_050No text annotation
HL_6QT0_051No text annotation
HL_6QT0_052No text annotation
HL_6QT0_053No text annotation
HL_6QT0_054No text annotation
HL_6QT0_055No text annotation
HL_6QT0_056No text annotation
HL_6QT0_057No text annotation
HL_6QT0_058No text annotation
HL_6QT0_059GNRA
HL_6QT0_060No text annotation
HL_6QT0_061No text annotation
HL_6QT0_062No text annotation
HL_6QT0_063No text annotation
HL_6QT0_064GNRA
HL_6QT0_069No text annotation
HL_6QT0_071No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6QT0_0011/A/7:8,
1/y/150:152		No text annotation
Not in a motif group		homologous
IL_8C3A_002
IL_61258.12
IL_6QT0_0021/A/13:15,
1/y/144:145		No text annotation
Not in a motif group		homologous
IL_8C3A_003
IL_83039.13
IL_6QT0_0031/A/27:28,
1/A/56:58		No text annotation
Not in a motif group		homologous
IL_8C3A_004
IL_76488.2
IL_6QT0_0041/A/31:38,
1/A/45:53		tSH-tHW-tHH-tHS
Not in a motif group		homologous
IL_5TBW_005
IL_35728.2
IL_6QT0_0051/A/82:89,
1/A/97:103		No text annotation
Not in a motif group		homologous
IL_5TBW_006
IL_88613.1
IL_6QT0_0061/A/123:124,
1/A/144:149		No text annotation
Not in a motif group		homologous
IL_5TBW_007
IL_19724.2
IL_6QT0_0071/A/125:127,
1/A/141:143		No text annotation
Not in a motif group		homologous
IL_8C3A_008
IL_95997.1
IL_6QT0_0091/A/177:178,
1/A/238:241		No text annotation
Not in a motif group
IL_6QT0_0101/A/189:191,
1/A/204:205		Single bulged U
Not in a motif group		homologous
IL_5TBW_012
IL_83039.13
IL_6QT0_0111/A/337:339,
1/y/25:26		Single bulged A
Not in a motif group		homologous
IL_5TBW_013
IL_37497.2
IL_6QT0_0121/A/376:379,
1/A/390:403		No text annotation
Not in a motif group		homologous
IL_5TBW_014
IL_60992.6
IL_6QT0_0131/A/404:410,
1/y/13:19		Triple sheared with non-canonical cWW
Not in a motif group		homologous
IL_5TBW_015
IL_66414.6
IL_6QT0_0141/A/429:431,
1/A/628:630		No text annotation
Not in a motif group		homologous
IL_5TBW_016
IL_51629.2
IL_6QT0_0161/A/512:513,
1/A/577:579		Single bulged A
Not in a motif group		homologous
IL_5TBW_018
IL_37497.2
IL_6QT0_0171/A/517:525,
1/A/567:573		No text annotation
Not in a motif group		homologous
IL_5TBW_019
IL_23992.1
IL_6QT0_0181/A/531:539,
1/A/552:561		No text annotation
Not in a motif group
IL_6QT0_0191/A/668:670,
1/A/792:794		No text annotation
Not in a motif group		homologous
IL_5TBW_021
IL_95997.1
IL_6QT0_0201/A/680:684,
1/A/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_74284.1
IL_6QT0_0211/A/725:728,
1/A/741:745		UAA/GAN
Not in a motif group		homologous
IL_5TBW_023
IL_07235.1
IL_6QT0_0221/A/752:753,
1/A/779:781		Single bulged A
Not in a motif group		homologous
IL_5TBW_024
IL_37497.2
IL_6QT0_0231/A/755:757,
1/A/774:777		No text annotation
Not in a motif group		geometric
IL_5E81_376
IL_95997.1
IL_6QT0_0251/A/803:805,
1/A/938:940		No text annotation
Not in a motif group		geometric
IL_5TBW_027
IL_95997.1
IL_6QT0_0261/A/805:809,
1/A/931:938		No text annotation
Not in a motif group		homologous
IL_5TBW_028
IL_17470.6
IL_6QT0_0321/A/954:956,
1/A/965:967		No text annotation
Not in a motif group		homologous
IL_5TBW_034
IL_95997.1
IL_6QT0_0331/A/969:970,
1/A/1111:1113		Single stack bend
Not in a motif group		homologous
IL_5TBW_035
IL_76488.2
IL_6QT0_0341/A/977:982,
1/A/1101:1104		No text annotation
Not in a motif group		homologous
IL_8C3A_039
IL_59027.1
IL_6QT0_0351/A/983:985,
1/A/1099:1100		No text annotation
Not in a motif group		homologous
IL_8C3A_040
IL_00225.2
IL_6QT0_0441/A/1120:1122,
1/A/1136:1138		No text annotation
Not in a motif group		homologous
IL_5TBW_046
IL_95997.1
IL_6QT0_0451/A/1167:1171,
1/A/1328:1332		UAA/GAN
Not in a motif group		homologous
IL_5TBW_048
IL_89002.2
IL_6QT0_0461/A/1173:1180,
1/A/1325:1326		SSU/LSU pseudoknot
Not in a motif group		homologous
IL_5TBW_049
IL_15861.7
IL_6QT0_0471/A/1180:1182,
1/A/1324:1325		Single bulged U
Not in a motif group		geometric
IL_5TBW_050
IL_83039.13
IL_6QT0_0501/A/1207:1209,
1/A/1296:1297		No text annotation
Not in a motif group		homologous
IL_8C3A_056
IL_83039.13
IL_6QT0_0521/A/1376:1378,
1/A/1428:1431		Isolated cWS basepair
Not in a motif group		homologous
IL_5TBW_057
IL_52767.2
IL_6QT0_0541/A/1388:1395,
1/A/1415:1419		Kink-turn
Not in a motif group		homologous
IL_5TBW_059
IL_70923.2
IL_6QT0_0561/A/1444:1450,
1/A/2354:2359		7x6 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_061
IL_76042.2
IL_6QT0_1101/A/3004:3007,
1/A/3139:3144		No text annotation
Not in a motif group		homologous
IL_8C3A_123
IL_09705.9
IL_6QT0_1111/A/3012:3014,
1/A/3040:3042		No text annotation
Not in a motif group		homologous
IL_8C3A_124
IL_95997.1
IL_6QT0_1121/A/3018:3025,
1/A/3030:3036		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		geometric
IL_5TBW_116
IL_04346.7
IL_6QT0_1131/A/3047:3051,
1/A/3091:3094		No text annotation
Not in a motif group		homologous
IL_8C3A_126
IL_37712.2
IL_6QT0_1141/A/3054:3059,
1/A/3084:3088		No text annotation
Not in a motif group		homologous
IL_8C3A_127
IL_17136.1
IL_6QT0_1161/A/3103:3107,
1/A/3127:3131		No text annotation
Not in a motif group		homologous
IL_8C3A_129
IL_89002.2
IL_6QT0_1171/A/3164:3166,
1/A/3284:3286		No text annotation
Not in a motif group		homologous
IL_8C3A_130
IL_95997.1
IL_6QT0_1181/A/3177:3179,
1/A/3210:3211		Single bulged A
Not in a motif group		homologous
IL_5TBW_123
IL_37497.2
IL_6QT0_1191/A/3179:3188,
1/A/3204:3210		No text annotation
Not in a motif group		geometric
IL_5TBW_124
IL_15174.1
IL_6QT0_1201/A/3192:3194,
1/A/3197:3200		No text annotation
Not in a motif group		geometric
IL_5UNE_007
IL_95997.1
IL_6QT0_1211/A/3300:3303,
1/A/3311:3314		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_5TBW_129
IL_30621.2
IL_6QT0_1221/A/3318:3320,
1/A/3387:3388		Single bulged U
Not in a motif group		geometric
IL_3D2V_001
IL_83039.13
IL_6QT0_1231/A/3324:3325,
1/A/3381:3383		No text annotation
Not in a motif group		homologous
IL_8C3A_137
IL_83039.13
IL_6QT0_1251/A/3332:3337,
1/A/3367:3371		No text annotation
Not in a motif group		homologous
IL_8C3A_139
IL_83162.5
IL_6QT0_1291/x/15:16,
1/x/63:65		Single bulged A
Not in a motif group		homologous
IL_5TBW_372
IL_37497.2
IL_6QT0_1301/x/21:27,
1/x/53:58		No text annotation
Not in a motif group		homologous
IL_5TBW_373
IL_10207.2
IL_6QT0_1311/x/28:29,
1/x/49:52		Minor groove platform
Not in a motif group		homologous
IL_5TBW_374
IL_63797.2
IL_6QT0_1321/x/29:30,
1/x/47:49		Single stack bend
Not in a motif group		geometric
IL_5TBW_375
IL_76488.2
IL_6QT0_1331/x/32:36,
1/x/41:45		Symmetric double minor groove platform
Not in a motif group		homologous
IL_5TBW_376
IL_58103.6
IL_6QT0_1341/x/72:80,
1/x/100:106		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_377
IL_04346.7
IL_6QT0_1351/x/84:87,
1/x/94:96		No text annotation
Not in a motif group		homologous
IL_5TBW_378
IL_95997.1
IL_6QT0_1361/y/64:67,
1/y/92:96		No text annotation
Not in a motif group
IL_6QT0_1371/y/68:69,
1/y/89:91		Single bulged U
Not in a motif group		homologous
IL_5TBW_146
IL_83039.13

Problematic loops

#loop idProblemSequence
IL_6QT0_008No text annotation
IL_6QT0_015No text annotation
IL_6QT0_024No text annotation
IL_6QT0_027Single bulged G
IL_6QT0_028No text annotation
IL_6QT0_029Major groove platform with extra cWW
IL_6QT0_030No text annotation
IL_6QT0_031Multiple bulged bases
IL_6QT0_0367x7 Sarcin-Ricin with intercalated A; G-bulge
IL_6QT0_037Major groove platform with extra cWW
IL_6QT0_038No text annotation
IL_6QT0_039Tandem non-canonical cWW pairs
IL_6QT0_040No text annotation
IL_6QT0_041No text annotation
IL_6QT0_042No text annotation
IL_6QT0_043Single bulged A
IL_6QT0_048No text annotation
IL_6QT0_049No text annotation
IL_6QT0_051No text annotation
IL_6QT0_053No text annotation
IL_6QT0_055Single bulged A
IL_6QT0_057C-loop
IL_6QT0_058UAA/GAN
IL_6QT0_059Other IL
IL_6QT0_060No text annotation
IL_6QT0_061No text annotation
IL_6QT0_062Triple sheared
IL_6QT0_063No text annotation
IL_6QT0_064Single bulged C
IL_6QT0_065Single stack bend
IL_6QT0_066No text annotation
IL_6QT0_067No text annotation
IL_6QT0_068Kink-turn
IL_6QT0_069No text annotation
IL_6QT0_070No text annotation
IL_6QT0_071Major groove platform; stack outside cWW
IL_6QT0_072Intercalated tWH
IL_6QT0_073No text annotation
IL_6QT0_074No text annotation
IL_6QT0_075No text annotation
IL_6QT0_076No text annotation
IL_6QT0_077Kink-turn related
IL_6QT0_078Major groove outside cWW, minor groove, intercalation pocket
IL_6QT0_079No text annotation
IL_6QT0_080Single bulged U
IL_6QT0_081Major groove platform with extra pair
IL_6QT0_082No text annotation
IL_6QT0_083Multiple bulged bases
IL_6QT0_084No text annotation
IL_6QT0_085Major groove platform with extra pair
IL_6QT0_086Minor groove platform with intercalation
IL_6QT0_087No text annotation
IL_6QT0_088Minor groove platform
IL_6QT0_089Isolated tHS basepair with bulges
IL_6QT0_090No text annotation
IL_6QT0_091No text annotation
IL_6QT0_092No text annotation
IL_6QT0_093Single bulged A
IL_6QT0_094Isolated tHS basepair with bulges
IL_6QT0_095Single bulged A
IL_6QT0_096Tandem non-canonical cWW pairs
IL_6QT0_097Single stack bend with bulge
IL_6QT0_098Major groove platform
IL_6QT0_099No text annotation
IL_6QT0_100Major groove platform
IL_6QT0_101No text annotation
IL_6QT0_102No text annotation
IL_6QT0_103Major groove platform
IL_6QT0_104Isolated non-canonical cWW with bulges
IL_6QT0_105Multiple bulged bases
IL_6QT0_106No text annotation
IL_6QT0_107Minor groove platform with intercalation
IL_6QT0_108No text annotation
IL_6QT0_109Single bulged A
IL_6QT0_115Multiple bulged bases
IL_6QT0_124No text annotation
IL_6QT0_126Single bulged U
IL_6QT0_127No text annotation
IL_6QT0_128Multiple bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6QT0_0021/A/369:376,
1/A/403:404,
1/y/19:20		No text annotation
Not in a motif group		homologous
J3_5TBW_002
NA
J3_6QT0_0031/A/502:503,
1/A/588:597,
1/A/606:611		No text annotation
Not in a motif group		homologous
J3_5TBW_003
NA
J3_6QT0_0141/A/3298:3300,
1/A/3314:3318,
1/A/3388:3390		No text annotation
Not in a motif group		homologous
J3_5TBW_015
NA
J3_6QT0_0151/x/9:14,
1/x/66:67,
1/x/111:112		No text annotation
Not in a motif group		homologous
J3_5TBW_045
NA
J3_6QT0_0161/y/43:45,
1/y/58:64,
1/y/96:101		No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
J3_6QT0_001No text annotation
J3_6QT0_004No text annotation
J3_6QT0_005No text annotation
J3_6QT0_006No text annotation
J3_6QT0_007No text annotation
J3_6QT0_008No text annotation
J3_6QT0_009No text annotation
J3_6QT0_010No text annotation
J3_6QT0_011No text annotation
J3_6QT0_012No text annotation
J3_6QT0_013No text annotation

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