Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A/38:45
geometric
HL_5TBW_001
NA

HL_23481.5*
1/A/69:74
homologous
HL_5TBW_114
NA
1/A/90:96
homologous
HL_5TBW_115
NA
1/A/132:136
homologous
HL_5TBW_116
NA
1/A/194:201
homologous
HL_5TBW_117
NA
1/A/208:212
homologous
HL_5TBW_118
NA
1/A/216:224
homologous
HL_5TBW_119
NA
1/A/278:287
homologous
HL_5TBW_120
NA
1/A/357:362
homologous
HL_5TBW_122
NA
1/A/382:387
homologous
HL_5TBW_123
NA
1/A/541:550NANA
1/A/599:604
homologous
HL_5TBW_125
NA
1/A/640:649
homologous
HL_5TBW_126
NA
1/A/686:694
homologous
HL_5TBW_127
NA
1/A/732:737
homologous
HL_5TBW_129
NA
1/A/958:963
homologous
HL_5TBW_134
NA
1/A/1148:1155
homologous
HL_5TBW_138
NA
1/A/1347:1357NANA
1/A/1403:1408
homologous
HL_5TBW_142
NA
1/A/3025:3030
homologous
HL_5TBW_178
NA
1/A/3068:3073
homologous
HL_5TBW_179
NA
1/A/3110:3124
homologous
HL_5TBW_180
NA
1/A/3194:3197
homologous
HL_5TBW_181
NA
1/A/3303:3311
homologous
HL_5TBW_183
NA
1/x/36:41NANA
1/x/88:93NANA
1/y/47:56
geometric
HL_7A0S_001
NA

HL_29414.1*
1/y/69:89NANA
1/y/108:114
homologous
HL_5TBW_075
NA

HL_06569.2*
1/y/124:129
homologous
HL_5TBW_076
NA

HL_60357.1*

Problematic loops

#loop idProblemSequence
HL_6QT0_009
homologous
HL_5TBW_121
HL_6QT0_016
homologous
HL_5TBW_128
HL_6QT0_018
homologous
HL_5TBW_130
HL_6QT0_019
geometric
HL_6SVS_001
HL_6QT0_020
homologous
HL_5TBW_132
HL_6QT0_021
homologous
HL_5TBW_133
HL_6QT0_023
geometric
HL_4V9F_032
HL_6QT0_024
geometric
HL_5TBW_024
HL_6QT0_025
homologous
HL_5TBW_137
HL_6QT0_027
geometric
HL_5TBW_027
HL_6QT0_028
geometric
HL_5TBW_028
HL_6QT0_031
geometric
HL_4WSM_226
HL_6QT0_032
homologous
HL_5TBW_144
HL_6QT0_033
homologous
HL_5TBW_145
HL_6QT0_034NA
HL_6QT0_035
homologous
HL_5TBW_147
HL_6QT0_036
homologous
HL_5TBW_148
HL_6QT0_037
homologous
HL_5TBW_149
HL_6QT0_038
homologous
HL_5TBW_150
HL_6QT0_039NA
HL_6QT0_040
homologous
HL_5TBW_152
HL_6QT0_041
homologous
HL_5TBW_153
HL_6QT0_042
homologous
HL_5TBW_154
HL_6QT0_043UNCG
geometric
HL_4LFB_009
HL_6QT0_044
geometric
HL_2Y9H_005
HL_6QT0_045
homologous
HL_5TBW_157
HL_6QT0_046
homologous
HL_5TBW_158
HL_6QT0_047
homologous
HL_5TBW_159
HL_6QT0_048
homologous
HL_5TBW_160
HL_6QT0_049NA
HL_6QT0_050
homologous
HL_5TBW_162
HL_6QT0_051NA
HL_6QT0_052NA
HL_6QT0_053NA
HL_6QT0_054
homologous
HL_5TBW_167
HL_6QT0_055
homologous
HL_5TBW_168
HL_6QT0_056
homologous
HL_5TBW_169
HL_6QT0_057
homologous
HL_5TBW_170
HL_6QT0_058
homologous
HL_5TBW_171
HL_6QT0_059
homologous
HL_5TBW_172
HL_6QT0_060
homologous
HL_5TBW_173
HL_6QT0_061
homologous
HL_5TBW_174
HL_6QT0_062
homologous
HL_5TBW_175
HL_6QT0_063
homologous
HL_5TBW_176
HL_6QT0_064
homologous
HL_5TBW_177
HL_6QT0_069NA
HL_6QT0_071
homologous
HL_5TBW_184

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A/7:8,
1/y/150:152
Single bulged C
homologous
IL_5TBW_002
NA

IL_61258.10*
1/A/13:15,
1/y/144:145
Single bulged U
homologous
IL_5TBW_003
NA

IL_83039.11*
1/A/27:28,
1/A/56:58

homologous
IL_5TBW_240
NA
1/A/31:38,
1/A/45:53

homologous
IL_5TBW_241
NA
1/A/82:89,
1/A/97:103

homologous
IL_5TBW_242
NA
1/A/123:124,
1/A/144:149

homologous
IL_5TBW_243
NA
1/A/125:127,
1/A/141:143

homologous
IL_5TBW_244
NA
1/A/177:178,
1/A/238:241
NANA
1/A/189:191,
1/A/204:205

homologous
IL_5TBW_248
NA
1/A/337:339,
1/y/25:26
Single bulged A
homologous
IL_5TBW_013
NA

IL_80007.16*
1/A/376:379,
1/A/390:403

homologous
IL_5TBW_250
NA
1/A/404:410,
1/y/13:19
Triple sheared with non-canonical cWW
geometric
IL_5TBW_015
NA

IL_66414.5*
1/A/429:431,
1/A/628:630

homologous
IL_5TBW_252
NA
1/A/512:513,
1/A/577:579

homologous
IL_5TBW_254
NA
1/A/517:525,
1/A/567:573

homologous
IL_5TBW_255
NA
1/A/531:539,
1/A/552:561
NANA
1/A/668:670,
1/A/792:794

homologous
IL_5TBW_257
NA
1/A/680:684,
1/A/696:700

homologous
IL_5TBW_258
NA
1/A/725:728,
1/A/741:745

homologous
IL_5TBW_259
NA
1/A/752:753,
1/A/779:781

homologous
IL_5TBW_260
NA
1/A/755:757,
1/A/774:777

geometric
IL_5E81_376
NA

IL_01312.13*
1/A/803:805,
1/A/938:940

geometric
IL_5TBW_027
NA

IL_01312.13*
1/A/805:809,
1/A/931:938

homologous
IL_5TBW_264
NA
1/A/954:956,
1/A/965:967

homologous
IL_5TBW_270
NA
1/A/969:970,
1/A/1111:1113

homologous
IL_5TBW_271
NA
1/A/977:982,
1/A/1101:1104
NANA
1/A/983:985,
1/A/1099:1100

homologous
IL_5TBW_273
NA
1/A/1120:1122,
1/A/1136:1138

homologous
IL_5TBW_282
NA
1/A/1167:1171,
1/A/1328:1332

homologous
IL_5TBW_284
NA
1/A/1173:1180,
1/A/1325:1326

homologous
IL_5TBW_285
NA
1/A/1180:1182,
1/A/1324:1325
Single bulged U
geometric
IL_5TBW_050
NA

IL_83039.11*
1/A/1207:1209,
1/A/1296:1297

homologous
IL_5TBW_289
NA
1/A/1376:1378,
1/A/1428:1431

homologous
IL_5TBW_293
NA
1/A/1388:1395,
1/A/1415:1419

homologous
IL_5TBW_295
NA
1/A/1444:1450,
1/A/2354:2359

homologous
IL_5TBW_297
NA
1/A/3004:3007,
1/A/3139:3144

homologous
IL_5TBW_349
NA
1/A/3012:3014,
1/A/3040:3042

homologous
IL_5TBW_350
NA
1/A/3018:3025,
1/A/3030:3036
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA

IL_04346.5*
1/A/3047:3051,
1/A/3091:3094

homologous
IL_5TBW_352
NA
1/A/3054:3059,
1/A/3084:3088

homologous
IL_5TBW_353
NA
1/A/3103:3107,
1/A/3127:3131

homologous
IL_5TBW_355
NA
1/A/3164:3166,
1/A/3284:3286

geometric
IL_4M4O_001
NA

IL_01312.13*
1/A/3177:3179,
1/A/3210:3211

homologous
IL_5TBW_358
NA
1/A/3179:3188,
1/A/3204:3210

geometric
IL_5TBW_124
NA

IL_56867.1*
1/A/3192:3194,
1/A/3197:3200

geometric
IL_5UNE_007
NA

IL_01312.13*
1/A/3300:3303,
1/A/3311:3314
Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA

IL_85877.10*
1/A/3318:3320,
1/A/3387:3388
Single bulged U
geometric
IL_3D2V_001
NA

IL_83039.11*
1/A/3324:3325,
1/A/3381:3383
NANA
1/A/3332:3337,
1/A/3367:3371

homologous
IL_5TBW_368
NA
1/x/15:16,
1/x/63:65
NANA
1/x/21:27,
1/x/53:58
NANA
1/x/28:29,
1/x/49:52
NANA
1/x/29:30,
1/x/47:49
NANA
1/x/32:36,
1/x/41:45
NANA
1/x/72:80,
1/x/100:106
NANA
1/x/84:87,
1/x/94:96
NANA
1/y/64:67,
1/y/92:96
NANA
1/y/68:69,
1/y/89:91
Single bulged U
homologous
IL_5TBW_146
NA

IL_83039.11*

Problematic loops

#loop idProblemSequence
IL_6QT0_008NA
IL_6QT0_015NA
IL_6QT0_024
geometric
IL_5TBW_026
IL_6QT0_027Single bulged G
geometric
IL_4V9F_026
IL_6QT0_028
homologous
IL_5TBW_266
IL_6QT0_029
homologous
IL_5TBW_267
IL_6QT0_030
homologous
IL_5TBW_268
IL_6QT0_031Multiple bulged bases
geometric
IL_5TBW_033
IL_6QT0_0367x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
IL_6QT0_037Major groove platform with extra cWW
geometric
IL_3PDR_004
IL_6QT0_038
homologous
IL_5TBW_276
IL_6QT0_039
homologous
IL_5TBW_277
IL_6QT0_040
geometric
IL_5TBW_127
IL_6QT0_041NA
IL_6QT0_042
homologous
IL_5TBW_280
IL_6QT0_043
homologous
IL_5TBW_281
IL_6QT0_048
homologous
IL_5TBW_287
IL_6QT0_049
geometric
IL_5TBW_052
IL_6QT0_051NA
IL_6QT0_053
homologous
IL_5TBW_294
IL_6QT0_055
homologous
IL_5TBW_296
IL_6QT0_057C-loop
geometric
IL_7RQB_051
IL_6QT0_058
homologous
IL_5TBW_299
IL_6QT0_059
homologous
IL_5TBW_300
IL_6QT0_060Isolated non-canonical cWW with bulges
geometric
IL_4PKD_001
IL_6QT0_061
geometric
IL_5TBW_066
IL_6QT0_062Triple sheared
geometric
IL_5TBW_067
IL_6QT0_063
homologous
IL_5TBW_304
IL_6QT0_064
homologous
IL_5TBW_305
IL_6QT0_065Single stack bend
geometric
IL_5TBW_070
IL_6QT0_066
homologous
IL_5TBW_307
IL_6QT0_067
homologous
IL_5TBW_308
IL_6QT0_068
homologous
IL_5TBW_309
IL_6QT0_069NA
IL_6QT0_070
homologous
IL_5TBW_311
IL_6QT0_071
homologous
IL_5TBW_312
IL_6QT0_072Intercalated tWH
geometric
IL_5J7L_307
IL_6QT0_073
homologous
IL_5TBW_314
IL_6QT0_074
homologous
IL_5TBW_315
IL_6QT0_075
homologous
IL_5TBW_316
IL_6QT0_076
geometric
IL_4V9K_064
IL_6QT0_077
homologous
IL_5TBW_319
IL_6QT0_078
homologous
IL_5TBW_320
IL_6QT0_079
homologous
IL_5TBW_321
IL_6QT0_080
homologous
IL_5TBW_322
IL_6QT0_081Major groove platform with extra pair
geometric
IL_5TBW_087
IL_6QT0_082
homologous
IL_5TBW_324
IL_6QT0_083Multiple bulged bases
geometric
IL_5TBW_089
IL_6QT0_084
homologous
IL_5TBW_326
IL_6QT0_085
homologous
IL_5TBW_327
IL_6QT0_086
homologous
IL_5TBW_328
IL_6QT0_087
homologous
IL_5TBW_329
IL_6QT0_088
homologous
IL_5TBW_330
IL_6QT0_089
homologous
IL_5TBW_331
IL_6QT0_090NA
IL_6QT0_091
homologous
IL_5TBW_332
IL_6QT0_092NA
IL_6QT0_093
homologous
IL_5TBW_333
IL_6QT0_094
homologous
IL_5TBW_334
IL_6QT0_095Single bulged A
geometric
IL_5WWT_001
IL_6QT0_096
homologous
IL_5TBW_335
IL_6QT0_097
homologous
IL_5TBW_336
IL_6QT0_098Major groove platform
geometric
IL_5TBW_102
IL_6QT0_099
homologous
IL_5TBW_338
IL_6QT0_100Major groove platform
geometric
IL_5TBW_104
IL_6QT0_101
homologous
IL_5TBW_340
IL_6QT0_102
homologous
IL_5TBW_341
IL_6QT0_103
homologous
IL_5TBW_342
IL_6QT0_104Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
IL_6QT0_105
homologous
IL_5TBW_344
IL_6QT0_106
geometric
IL_5TBW_110
IL_6QT0_107
homologous
IL_5TBW_346
IL_6QT0_108
geometric
IL_5TBW_112
IL_6QT0_109
homologous
IL_5TBW_348
IL_6QT0_115
homologous
IL_5TBW_354
IL_6QT0_124
homologous
IL_5TBW_367
IL_6QT0_126Single bulged U
geometric
IL_3WBM_001
IL_6QT0_127
homologous
IL_5TBW_370
IL_6QT0_128Multiple bulged bases
geometric
IL_7V9E_001

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A/369:376,
1/A/403:404,
1/y/19:20

homologous
J3_5TBW_002
NA
1/A/502:503,
1/A/588:597,
1/A/606:611

homologous
J3_5TBW_032
NA
1/A/3298:3300,
1/A/3314:3318,
1/A/3388:3390

homologous
J3_5TBW_044
NA
1/x/9:14,
1/x/66:67,
1/x/111:112
NANA
1/y/43:45,
1/y/58:64,
1/y/96:101
NANA

Problematic loops

#loop idProblemSequence
J3_6QT0_001NA
J3_6QT0_004NA
J3_6QT0_005
homologous
J3_5TBW_034
J3_6QT0_006NA
J3_6QT0_007
homologous
J3_5TBW_037
J3_6QT0_008
homologous
J3_5TBW_038
J3_6QT0_009
homologous
J3_5TBW_039
J3_6QT0_010
homologous
J3_5TBW_040
J3_6QT0_011NA
J3_6QT0_012NA
J3_6QT0_013
homologous
J3_5TBW_043

Coloring options:
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