7PJU Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/A/59:68 | geometric HL_5J7L_134 | NA HL_29414.1* | ||
1/A/87:95 | geometric HL_5J7L_135 | NA HL_17926.5* | ||
1/A/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
1/A/137:142 | geometric HL_2Y9H_003 | NA HL_98557.5* | ||
1/A/158:168 | geometric HL_5J7L_138 | NA HL_81820.1* | ||
1/A/194:201 | homologous HL_7RQB_006 | NA HL_23481.5* | ||
1/A/225:230 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
1/A/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
1/A/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
1/A/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
1/A/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
1/A/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
1/A/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
1/A/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
1/A/544:549 | Other HL geometric HL_1P6V_001 | NA HL_79299.11* | ||
1/A/566:575 | homologous HL_7RQB_018 | NA HL_33239.17* | ||
1/A/611:617 | geometric HL_5J7L_151 | NA HL_25660.1* | ||
1/A/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
1/A/640:648 | NA | NA | ||
1/A/712:719 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
1/A/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
1/A/779:785 | homologous HL_7RQB_024 | NA HL_16898.3* | ||
1/A/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
1/A/883:893 | NA | NA | ||
1/A/954:963 | geometric HL_3RG5_006 | NA HL_83315.1* | ||
1/A/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
1/A/1062:1076 | NA | NA | ||
1/A/1092:1099 | NA | NA | ||
1/A/1169:1180 | NA | NA | ||
1/A/1222:1227 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
1/A/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
1/A/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
1/A/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
1/A/1389:1398 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
1/A/1451:1459 | geometric HL_5J7L_169 | NA HL_71540.1* | ||
1/A/1492:1498 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
1/A/1533:1538 | NA | NA | ||
1/A/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
1/A/1612:1619 | NA | NA | ||
1/A/1630:1636 | GNRA with one bulged base geometric HL_5J7L_174 | NA HL_02361.6* | ||
1/A/1691:1696 | homologous HL_7RQB_042 | NA HL_79299.11* | ||
1/A/1728:1731 | geometric HL_6U8D_003 | NA HL_18722.3* | ||
1/A/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
1/A/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
1/A/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
1/A/1868:1873 | GNRA geometric HL_6JDV_001 | NA HL_43074.18* | ||
1/A/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
1/A/2027:2036 | NA | NA | ||
1/A/2116:2164 | NA | NA | ||
1/A/2209:2215 | geometric HL_5J7L_185 | NA HL_16845.5* | ||
1/A/2248:2256 | homologous HL_7RQB_053 | NA | ||
1/A/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
1/A/2303:2313 | homologous HL_7RQB_055 | NA HL_11805.3* | ||
1/A/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
1/A/2356:2361 | Other HL geometric HL_5J7L_190 | NA HL_43074.18* | ||
1/A/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
1/A/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
1/A/2471:2479 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
1/A/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
1/A/2551:2557 | homologous HL_7RQB_062 | NA | ||
1/A/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
1/A/2658:2663 | homologous HL_7RQB_064 | NA HL_43074.18* | ||
1/A/2701:2706 | Ribsomal LSU H95 geometric HL_5J7L_198 | NA HL_67719.1* | ||
1/A/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
1/A/2796:2799 | geometric HL_6JOO_002 | NA HL_69353.7* | ||
1/A/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
1/A/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
1/B/38:44 | homologous HL_5TBW_185 | NA HL_02733.5* | ||
1/B/86:90 | geometric HL_6MSF_001 | NA HL_57052.3* | ||
1/a/12:22 | NA | NA | ||
1/a/78:91 | NA | NA | ||
1/a/157:164 | NA | NA | ||
1/a/186:191 | NA | NA | ||
1/a/207:212 | NA | NA | ||
1/a/259:267 | NA | NA | ||
1/a/296:301 | NA | NA | ||
1/a/320:333 | NA | NA | ||
1/a/342:347 | NA | NA | ||
1/a/379:384 | NA | NA | ||
1/a/419:424 | NA | NA | ||
1/a/462:470 | NA | NA | ||
1/a/521:528 | NA | NA | ||
1/a/617:623 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7PJU_047 | NA | ||
HL_7PJU_085 | NA | ||
HL_7PJU_086 | NA | ||
HL_7PJU_087 | NA | ||
HL_7PJU_088 | NA | ||
HL_7PJU_089 | NA | ||
HL_7PJU_090 | NA | ||
HL_7PJU_091 | NA | ||
HL_7PJU_092 | NA | ||
HL_7PJU_093 | NA | ||
HL_7PJU_094 | NA | ||
HL_7PJU_095 | NA | ||
HL_7PJU_096 | NA | ||
HL_7PJU_097 | NA | ||
HL_7PJU_098 | NA | ||
HL_7PJU_099 | NA | ||
HL_7PJU_100 | NA | ||
HL_7PJU_101 | NA | ||
HL_7PJU_102 | NA | ||
HL_7PJU_103 | NA | ||
HL_7PJU_104 | NA | ||
HL_7PJU_105 | NA | ||
HL_7PJU_106 | NA | ||
HL_7PJU_107 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW geometric IL_4WF9_001 | NA IL_66414.5* | ||
1/A/36:37, 1/A/442:444 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
1/A/43:44, 1/A/434:436 | Minor groove platform homologous IL_7RQB_003 | NA IL_06437.11* | ||
1/A/81:85, 1/A/97:105 | Kink-turn homologous IL_7RQB_004 | NA IL_29549.9* | ||
1/A/183:184, 1/A/212:214 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge geometric IL_7RQB_006 | NA IL_04346.5* | ||
1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007 | NA IL_35110.5* | ||
1/A/269:271, 1/A/366:370 | geometric IL_5J7L_252 | NA IL_47972.1* | ||
1/A/274:281, 1/A/359:363 | NA | NA | ||
1/A/293:295, 1/A/343:347 | homologous IL_7RQB_013 | NA IL_69440.1* | ||
1/A/481:484, 1/A/496:509 | geometric IL_5J7L_255 | NA IL_60992.5* | ||
1/A/536:539, 1/A/554:557 | Double sheared geometric IL_5J7L_256 | NA IL_09705.7* | ||
1/A/564:566, 1/A/575:577 | geometric IL_5J7L_257 | NA IL_01312.13* | ||
1/A/606:610, 1/A/618:622 | AAA cross-strand stack homologous IL_7RQB_016 | NA IL_56467.6* | ||
1/A/672:674, 1/A/806:808 | geometric IL_5J7L_259 | NA IL_01312.13* | ||
1/A/674:678, 1/A/799:806 | homologous IL_7RQB_018 | NA IL_17470.5* | ||
1/A/697:698, 1/A/763:765 | Single bulged A geometric IL_4V9F_025 | NA IL_80007.16* | ||
1/A/702:703, 1/A/728:730 | Single bulged G homologous IL_7RQB_020 | NA IL_59137.10* | ||
1/A/703:707, 1/A/724:728 | Triple sheared geometric IL_5J7L_263 | NA IL_56467.6* | ||
1/A/738:740, 1/A/757:758 | Major groove platform geometric IL_5J7L_264 | NA IL_80663.10* | ||
1/A/775:777, 1/A/787:791 | Multiple bulged bases homologous IL_7RQB_023 | NA IL_90991.5* | ||
1/A/844:847, 1/A/933:934 | Other IL geometric IL_5J7L_267 | NA IL_31836.1* | ||
1/A/847:848, 1/A/930:933 | Stack outside cWW geometric IL_5J7L_268 | NA IL_37629.1* | ||
1/A/850:851, 1/A/926:928 | Single stack bend geometric IL_5J7L_269 | NA IL_04038.4* | ||
1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge geometric IL_5J7L_270 | NA IL_93830.2* | ||
1/A/862:863, 1/A/913:915 | Minor groove platform homologous IL_7RQB_028 | NA IL_06437.11* | ||
1/A/864:868, 1/A/909:912 | C-loop homologous IL_7RQB_029 | NA IL_63596.4* | ||
1/A/870:872, 1/A/905:907 | Isolated cWS basepair homologous IL_7RQB_030 | NA IL_67621.5* | ||
1/A/875:879, 1/A/898:902 | Triple sheared geometric IL_4WFL_001 | NA IL_56467.6* | ||
1/A/880:881, 1/A/895:897 | Single bulged A geometric IL_5J7L_344 | NA IL_80007.16* | ||
1/A/994:996, 1/A/1159:1160 | Single bulged C homologous IL_7RQB_035 | NA IL_61258.10* | ||
1/A/998:1002, 1/A/1153:1157 | UAA/GAN homologous IL_7RQB_036 | NA IL_53523.5* | ||
1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot geometric IL_5J7L_278 | NA IL_15861.6* | ||
1/A/1011:1013, 1/A/1149:1150 | Single bulged U homologous IL_7RQB_038 | NA IL_83039.11* | ||
1/A/1018:1024, 1/A/1140:1144 | homologous IL_7RQB_039 | NA IL_57188.3* | ||
1/A/1024:1030, 1/A/1124:1140 | geometric IL_5J7L_281 | NA IL_22615.1* | ||
1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | NA IL_55456.1* | ||
1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs geometric IL_5J7L_283 | NA IL_85877.10* | ||
1/A/1043:1053, 1/A/1106:1112 | NA | NA | ||
1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair homologous IL_7RQB_045 | NA IL_67621.5* | ||
1/A/1202:1206, 1/A/1240:1243 | geometric IL_5J7L_287 | NA IL_91920.1* | ||
1/A/1208:1215, 1/A/1234:1238 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049 | NA IL_04346.5* | ||
1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW homologous IL_7RQB_050 | NA IL_70995.6* | ||
1/A/1319:1323, 1/A/1331:1333 | C-loop homologous IL_7RQB_051 | NA IL_63596.4* | ||
1/A/1351:1355, 1/A/1376:1380 | UAA/GAN geometric IL_5J7L_292 | NA IL_34907.2* | ||
1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
1/A/1415:1416, 1/A/1582:1587 | geometric IL_5J7L_294 | NA IL_90348.1* | ||
1/A/1417:1421, 1/A/1577:1581 | UAA/GAN homologous IL_7RQB_055 | NA IL_53523.5* | ||
1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs geometric IL_5J7L_296 | NA IL_85877.10* | ||
1/A/1437:1440, 1/A/1551:1555 | tSH-tHW homologous IL_7RQB_057 | NA IL_08757.3* | ||
1/A/1450:1451, 1/A/1459:1461 | Single bulged U geometric IL_5J7L_298 | NA IL_83039.11* | ||
1/A/1468:1471, 1/A/1520:1524 | geometric IL_5J7L_299 | NA IL_68574.2* | ||
1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS geometric IL_5J7L_300 | NA IL_39521.5* | ||
1/A/1481:1482, 1/A/1507:1510 | geometric IL_5J7L_301 | NA IL_67474.3* | ||
1/A/1489:1491, 1/A/1499:1500 | Single bulged A homologous IL_7RQB_062 | NA IL_40508.4* | ||
1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation geometric IL_5J7L_303 | NA IL_81389.2* | ||
1/A/1651:1656, 1/A/2004:2006 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn homologous IL_7RQB_065 | NA IL_54997.5* | ||
1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW geometric IL_5J7L_306 | NA IL_80663.10* | ||
1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH homologous IL_7RQB_067 | NA IL_01312.13* | ||
1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS geometric IL_5J7L_308 | NA IL_66584.5* | ||
1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge geometric IL_5J7L_309 | NA IL_88269.2* | ||
1/A/1720:1724, 1/A/1736:1740 | Triple sheared geometric IL_5J7L_310 | NA IL_56467.6* | ||
1/A/1727:1728, 1/A/1731:1733 | Single bulged C geometric IL_5J7L_311 | NA IL_61258.10* | ||
1/A/1770:1771, 1/A/1980:1982 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
1/A/1798:1804, 1/A/1813:1821 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
1/A/1837:1840, 1/A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071 | NA IL_31836.1* | ||
1/A/1841:1842, 1/A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket geometric IL_5J7L_315 | NA IL_13730.12* | ||
1/A/1846:1849, 1/A/1893:1894 | Major groove minor groove platform; mini C-loop geometric IL_5J7L_316 | NA IL_09061.4* | ||
1/A/1864:1867, 1/A/1874:1878 | UAA/GAN related geometric IL_5J7L_317 | NA IL_81389.2* | ||
1/A/1907:1909, 1/A/1922:1925 | NA | NA | ||
1/A/1933:1934, 1/A/1964:1967 | Multiple bulged bases homologous IL_7RQB_076 | NA IL_69632.1* | ||
1/A/1934:1945, 1/A/1961:1964 | geometric IL_7A0S_072 | NA IL_07097.1* | ||
1/A/2050:2052, 1/A/2617:2618 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
1/A/2054:2056, 1/A/2612:2615 | geometric IL_5J7L_321 | NA IL_54678.3* | ||
1/A/2064:2066, 1/A/2444:2446 | geometric IL_6OL3_002 | NA IL_01312.13* | ||
1/A/2067:2070, 1/A/2441:2443 | geometric IL_5C5W_002 | NA IL_87880.2* | ||
1/A/2070:2071, 1/A/2438:2441 | Minor groove platform geometric IL_7A0S_076 | NA IL_06437.11* | ||
1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
1/A/2085:2087, 1/A/2232:2234 | homologous IL_7RQB_083 | NA IL_01312.13* | ||
1/A/2099:2102, 1/A/2188:2190 | NA | NA | ||
1/A/2202:2204, 1/A/2220:2221 | Single bulged U geometric IL_5J7L_331 | NA IL_21340.1* | ||
1/A/2350:2353, 1/A/2364:2367 | Double sheared homologous IL_7RQB_089 | NA IL_09705.7* | ||
1/A/2401:2403, 1/A/2414:2415 | Single bulged U geometric IL_5TBW_086 | NA IL_21340.1* | ||
1/A/2453:2455, 1/A/2496:2500 | NA | NA | ||
1/A/2456:2459, 1/A/2493:2495 | Major groove platform with extra pair geometric IL_7RQB_093 | NA IL_87630.5* | ||
1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW homologous IL_7RQB_094 | NA IL_96042.4* | ||
1/A/2466:2470, 1/A/2480:2484 | Triple sheared homologous IL_7RQB_095 | NA IL_56467.6* | ||
1/A/2507:2509, 1/A/2579:2582 | Major groove platform with extra pair geometric IL_7RQB_093 | NA IL_87630.5* | ||
1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges geometric IL_7A0S_089 | NA IL_01312.13* | ||
1/A/2512:2513, 1/A/2571:2574 | Multiple bulged bases homologous IL_7RQB_098 | NA IL_13730.12* | ||
1/A/2522:2523, 1/A/2540:2543 | Minor groove platform with intercalation homologous IL_7RQB_099 | NA IL_95601.1* | ||
1/A/2588:2591, 1/A/2603:2606 | geometric IL_6AZ4_001 | NA IL_01759.1* | ||
1/A/2591:2592, 1/A/2601:2603 | Single bulged A geometric IL_1I9X_001 | NA IL_80007.16* | ||
1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW homologous IL_7RQB_102 | NA IL_34907.2* | ||
1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge geometric IL_7A0S_094 | NA IL_35110.5* | ||
1/A/2680:2684, 1/A/2725:2727 | C-loop homologous IL_7RQB_104 | NA IL_63596.4* | ||
1/A/2687:2691, 1/A/2718:2722 | homologous IL_7RQB_105 | NA IL_08296.3* | ||
1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases homologous IL_7RQB_106 | NA IL_77034.1* | ||
1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW homologous IL_7RQB_107 | NA IL_49767.4* | ||
1/A/2795:2796, 1/A/2799:2801 | Single bulged A geometric IL_4WF9_022 | NA IL_80007.16* | ||
1/A/2806:2811, 1/A/2889:2892 | geometric IL_5J7L_351 | NA IL_82988.1* | ||
1/A/2838:2839, 1/A/2878:2880 | Single bulged C homologous IL_7RQB_108 | NA IL_61258.10* | ||
1/A/2843:2846, 1/A/2870:2874 | homologous IL_7RQB_109 | NA IL_58764.1* | ||
1/A/2847:2852, 1/A/2865:2869 | homologous IL_7RQB_110 | NA IL_83162.3* | ||
1/B/17:19, 1/B/64:67 | Isolated non-canonical cWW with bulges geometric IL_1U6B_001 | NA IL_01312.13* | ||
1/B/23:28, 1/B/56:60 | geometric IL_5J7L_356 | NA IL_18472.1* | ||
1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop geometric IL_7RQB_113 | NA IL_09061.4* | ||
1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform geometric IL_5J7L_358 | NA IL_58103.5* | ||
1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E geometric IL_5J7L_359 | NA IL_56455.3* | ||
1/a/30:32, 1/a/552:553 | NA | NA | ||
1/a/44:45, 1/a/396:398 | NA | NA | ||
1/a/47:52, 1/a/359:361 | NA | NA | ||
1/a/54:56, 1/a/356:357 | NA | NA | ||
1/a/63:66, 1/a/103:104 | NA | NA | ||
1/a/67:69, 1/a/99:102 | NA | NA | ||
1/a/70:73, 1/a/97:98 | NA | NA | ||
1/a/75:77, 1/a/92:95 | NA | NA | ||
1/a/128:131, 1/a/231:233 | NA | NA | ||
1/a/132:136, 1/a/227:230 | NA | NA | ||
1/a/147:153, 1/a/168:175 | NA | NA | ||
1/a/203:206, 1/a/213:214 | NA | NA | ||
1/a/242:247, 1/a/277:284 | NA | NA | ||
1/a/249:252, 1/a/274:275 | NA | NA | ||
1/a/292:293, 1/a/304:308 | NA | NA | ||
1/a/367:369, 1/a/392:393 | NA | NA | ||
1/a/371:375, 1/a/389:390 | NA | NA | ||
1/a/375:376, 1/a/387:389 | NA | NA | ||
1/a/409:416, 1/a/427:433 | NA | NA | ||
1/a/440:442, 1/a/492:497 | NA | NA | ||
1/a/446:450, 1/a/483:488 | NA | NA | ||
1/a/450:455, 1/a/477:483 | NA | NA | ||
1/a/455:457, 1/a/475:477 | NA | NA | ||
1/a/504:511, 1/a/540:541 | NA | NA | ||
1/a/515:521, 1/a/528:536 | NA | NA | ||
1/a/569:575, 1/a/880:881 | NA | NA | ||
1/a/580:584, 1/a/757:761 | NA | NA | ||
1/a/594:596, 1/a/644:645 | NA | NA | ||
1/a/597:598, 1/a/640:643 | NA | NA | ||
1/a/605:612, 1/a/628:633 | NA | NA | ||
1/a/654:655, 1/a/751:754 | NA | NA | ||
1/a/659:660, 1/a/745:747 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_7PJU_144 | NA | ||
IL_7PJU_145 | NA | ||
IL_7PJU_146 | NA | ||
IL_7PJU_147 | NA | ||
IL_7PJU_148 | NA | ||
IL_7PJU_149 | NA | ||
IL_7PJU_150 | NA | ||
IL_7PJU_151 | NA | ||
IL_7PJU_152 | NA | ||
IL_7PJU_153 | NA | ||
IL_7PJU_154 | NA | ||
IL_7PJU_155 | NA | ||
IL_7PJU_156 | NA | ||
IL_7PJU_157 | NA | ||
IL_7PJU_158 | NA | ||
IL_7PJU_159 | NA | ||
IL_7PJU_160 | NA | ||
IL_7PJU_161 | NA | ||
IL_7PJU_162 | NA | ||
IL_7PJU_163 | NA | ||
IL_7PJU_164 | NA | ||
IL_7PJU_165 | NA | ||
IL_7PJU_166 | NA | ||
IL_7PJU_167 | NA | ||
IL_7PJU_168 | NA | ||
IL_7PJU_169 | NA | ||
IL_7PJU_170 | NA | ||
IL_7PJU_171 | NA | ||
IL_7PJU_172 | NA | ||
IL_7PJU_173 | NA | ||
IL_7PJU_174 | NA | ||
IL_7PJU_175 | NA | ||
IL_7PJU_176 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/A/30:31, 1/A/474:481, 1/A/509:510 | homologous J3_7RQB_001 | NA | ||
1/A/56:57, 1/A/70:76, 1/A/110:114 | homologous J3_7RQB_002 | NA | ||
1/A/297:301, 1/A/316:325, 1/A/337:341 | NA | NA | ||
1/A/683:689, 1/A/773:775, 1/A/791:794 | NA | NA | ||
1/A/698:700, 1/A/732:736, 1/A/760:763 | homologous J3_7RQB_005 | NA | ||
1/A/1055:1062, 1/A/1076:1091, 1/A/1100:1104 | NA | NA | ||
1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | homologous J3_7RQB_007 | NA | ||
1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | homologous J3_7RQB_008 | NA | ||
1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | NA | NA | ||
1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | homologous J3_7RQB_010 | NA | ||
1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | NA | NA | ||
1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | homologous J3_7RQB_012 | NA | ||
1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | NA | NA | ||
1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | NA | NA | ||
1/B/10:16, 1/B/68:70, 1/B/106:110 | NA | NA | ||
1/a/46:47, 1/a/361:367, 1/a/393:395 | NA | NA | ||
1/a/586:588, 1/a/651:654, 1/a/754:755 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_7PJU_018 | NA | ||
J3_7PJU_019 | NA | ||
J3_7PJU_020 | NA | ||
J3_7PJU_021 | NA | ||
J3_7PJU_022 | NA | ||
J3_7PJU_023 | NA | ||
J3_7PJU_024 | NA | ||
J3_7PJU_025 | NA | ||
J3_7PJU_026 | NA | ||
J3_7PJU_027 | NA |
Coloring options: